CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP047686	Serratia marcescens strain 2838 plasmid p2838-KPC, complete sequence	0 crisprs	NA	1
NZ_CP047687	Serratia marcescens strain 2838 plasmid pXQ, complete sequence	0 crisprs	NA	0
NZ_CP047685	Serratia marcescens strain 2838 chromosome, complete genome	0 crisprs	WYL,RT,DEDDh,DinG,csa3,cas3,casR	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

568154 : 601505

Pseudomonas_phage(95.0%)

head,transposase,integrase

attL 559338:559353|attR 577692:577707

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
559338:559353	attL	NA	NA	NA	NA
WP_094859860.1\|568154_568397_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.3e-16	62.3
WP_094859887.1\|568399_570433_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	5.4e-184	49.9
WP_094859859.1\|570448_571345_+	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	2.8e-153	94.3
WP_060417816.1\|571357_571591_+	hypothetical protein	A0A2D1GNI5	Pseudomonas_phage	3.8e-38	96.1
WP_094859858.1\|571651_572290_+	DUF3164 family protein	Q6QIE4	Burkholderia_phage	6.2e-70	62.9
WP_160208044.1\|572682_573204_+	hypothetical protein	A0A2D1GNV6	Pseudomonas_phage	2.2e-86	86.1
WP_094859855.1\|573193_573691_+	ANR family transcriptional regulator	A0A2D1GNQ2	Pseudomonas_phage	3.3e-55	66.9
WP_141240909.1\|573687_574023_+	hypothetical protein	A0A2D1GNS5	Pseudomonas_phage	2.9e-18	73.3
WP_094859853.1\|574019_574379_+	hypothetical protein	NA	NA	NA	NA
WP_094859852.1\|574389_574614_+	hypothetical protein	A0A2D1GNI2	Pseudomonas_phage	1.0e-35	94.6
WP_060417735.1\|575218_575467_+	hypothetical protein	A0A2D1GNS9	Pseudomonas_phage	9.5e-35	89.7
WP_094859851.1\|575438_575636_+	hypothetical protein	A0A2D1GNJ5	Pseudomonas_phage	5.7e-27	80.0
WP_094859850.1\|575632_576055_+	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	4.7e-66	88.6
WP_060435868.1\|576051_576501_+	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	1.3e-74	94.0
WP_094859849.1\|576601_577252_+	glycoside hydrolase family 19 protein	A0A2D1GNI0	Pseudomonas_phage	6.0e-105	94.9
WP_060417809.1\|577239_577524_+	hypothetical protein	A0A2D1GNW8	Pseudomonas_phage	8.3e-43	97.9
WP_141240908.1\|577495_578116_+	hypothetical protein	A0A2D1GNR2	Pseudomonas_phage	1.5e-97	93.2
577692:577707	attR	NA	NA	NA	NA
WP_040175207.1\|578112_578361_+	hypothetical protein	A0A2D1GNT8	Pseudomonas_phage	4.4e-08	100.0
WP_040175205.1\|578363_578591_+	hypothetical protein	A0A2D1GNJ0	Pseudomonas_phage	1.1e-21	85.3
WP_040175202.1\|578590_579094_+	DUF1804 family protein	A0A2D1GNN1	Pseudomonas_phage	8.8e-88	98.2
WP_094859847.1\|579086_579308_+	hypothetical protein	A0A2D1GNU0	Pseudomonas_phage	1.9e-23	88.7
WP_094859846.1\|579316_581101_+	hypothetical protein	A0A2D1GNP7	Pseudomonas_phage	0.0e+00	97.1
WP_160208043.1\|581106_582615_+	DUF935 domain-containing protein	A0A2D1GNX6	Pseudomonas_phage	1.5e-271	93.4
WP_094859844.1\|582614_583850_+	hypothetical protein	A0A2D1GNJ2	Pseudomonas_phage	3.1e-219	91.2
WP_160208042.1\|583849_584431_+	phage virion morphogenesis protein	A0A2D1GNX5	Pseudomonas_phage	4.6e-96	93.8
WP_094859842.1\|584638_585775_+	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	1.8e-181	89.2
WP_094859841.1\|585774_586701_+\|head	head protein	A0A2D1GNU8	Pseudomonas_phage	2.7e-175	97.4
WP_094887869.1\|586760_587570_+	hypothetical protein	A0A2D1GNK7	Pseudomonas_phage	3.4e-33	72.0
WP_060446215.1\|587572_587995_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	5.9e-69	90.0
WP_094859839.1\|587988_588456_+	hypothetical protein	A0A2D1GNU9	Pseudomonas_phage	8.4e-85	98.1
WP_060417720.1\|588452_588650_+	hypothetical protein	A0A2D1GNL3	Pseudomonas_phage	9.5e-22	82.8
WP_094859838.1\|588646_589393_+	hypothetical protein	A0A2D1GNQ7	Pseudomonas_phage	2.2e-127	90.3
WP_141240907.1\|589392_589866_+	hypothetical protein	A0A2D1GNY5	Pseudomonas_phage	1.5e-73	88.5
WP_094859837.1\|590065_593782_+	tape measure protein	A0A2D1GNK1	Pseudomonas_phage	0.0e+00	92.1
WP_094887868.1\|593781_594954_+	hypothetical protein	A0A2D1GNY4	Pseudomonas_phage	5.6e-218	97.2
WP_160208041.1\|594940_595756_+	DUF2163 domain-containing protein	A0A2D1GNT2	Pseudomonas_phage	5.9e-158	99.6
WP_094859834.1\|595766_596000_+	hypothetical protein	A0A2D1GNV4	Pseudomonas_phage	6.3e-41	100.0
WP_094859833.1\|596010_596214_+	hypothetical protein	A0A2D1GNL8	Pseudomonas_phage	2.2e-29	97.0
WP_094859832.1\|596213_598499_+	hypothetical protein	A0A2D1GNP9	Pseudomonas_phage	0.0e+00	97.9
WP_094859831.1\|598510_599308_+	hypothetical protein	A0A2D1GNV9	Pseudomonas_phage	8.1e-136	93.7
WP_160208040.1\|599312_601505_+	hypothetical protein	A0A2D1GNM3	Pseudomonas_phage	1.5e-27	54.6

DBSCAN-SWA_2

867868 : 937046

Salmonella_phage(17.14%)

tRNA,tail,plate,integrase

attL 873513:873530|attR 902442:902459

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047569296.1\|867868_868915_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_033637163.1\|868895_869657_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.3e-54	46.7
WP_033637164.1\|869650_870277_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.0e-34	49.4
WP_072021589.1\|870584_871601_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	8.2e-08	38.6
WP_004932578.1\|871655_872654_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_094859820.1\|872733_875295_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.9e-27	19.6
873513:873530	attL	NA	NA	NA	NA
WP_072021588.1\|875441_876899_+\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	3.4e-23	28.1
WP_001272879.1\|876910_877495_+	hypothetical protein	NA	NA	NA	NA
WP_047569290.1\|877653_878637_+	hypothetical protein	Q2P9W8	Enterobacteria_phage	8.7e-07	23.9
WP_000611155.1\|878764_879280_-	hypothetical protein	M1PL54	Cellulophaga_phage	1.0e-38	47.9
WP_047569287.1\|880192_880618_+	hypothetical protein	NA	NA	NA	NA
WP_072021587.1\|881201_882401_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_072021586.1\|882369_882807_-	ATP-binding protein	NA	NA	NA	NA
WP_072021585.1\|883119_883557_-	hypothetical protein	NA	NA	NA	NA
WP_072021584.1\|883903_885394_+	ATP-binding protein	K7PHD1	Enterobacteria_phage	3.2e-37	27.3
WP_141240905.1\|885404_886250_+	hypothetical protein	NA	NA	NA	NA
WP_047569276.1\|887443_888061_-	cell division protein Fic	NA	NA	NA	NA
WP_047569274.1\|888257_889142_-	hypothetical protein	NA	NA	NA	NA
WP_047569270.1\|889279_890251_-	aldo/keto reductase	NA	NA	NA	NA
WP_047571689.1\|890263_891022_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.9e-17	30.3
WP_047569268.1\|891170_892064_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004932561.1\|892480_892798_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_004932557.1\|892810_894172_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_049233625.1\|894215_895601_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_047569264.1\|895616_896465_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_047569262.1\|896613_897375_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_047569260.1\|897384_898764_-	MFS transporter	NA	NA	NA	NA
WP_041033341.1\|899007_899496_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.6e-25	48.0
WP_004932541.1\|899607_900672_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.9
WP_047569255.1\|900732_901245_+	recombination regulator RecX	NA	NA	NA	NA
WP_094859819.1\|901378_904006_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-80	37.5
902442:902459	attR	NA	NA	NA	NA
WP_004091602.1\|904258_904444_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_033650025.1\|905508_906075_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_004932520.1\|906071_906500_+	DedA family protein	NA	NA	NA	NA
WP_047569248.1\|906582_908145_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_019455133.1\|908311_908827_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_033637180.1\|908890_910180_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_033637181.1\|910221_911013_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004932504.1\|911182_912544_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|912758_913007_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_047569240.1\|913025_913574_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_047569238.1\|913626_914394_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_025301638.1\|914442_914799_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_033637183.1\|914942_915170_-	transcriptional regulator	Q37973	Salmonella_virus	1.3e-19	64.3
WP_047569236.1\|915259_916354_-	phage late control D family protein	Q6K1G4	Salmonella_virus	4.7e-102	49.2
WP_033652990.1\|916350_916824_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	4.8e-43	56.4
WP_094859818.1\|916846_918940_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	6.4e-15	45.0
WP_072021583.1\|918932_919055_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	2.2e-08	74.3
WP_033652960.1\|919087_919375_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.1e-23	59.1
WP_033641919.1\|919439_919949_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	69.0
WP_047569231.1\|919961_921131_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	8.4e-182	79.7
WP_094859817.1\|921271_921829_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	5.1e-28	39.8
WP_060423423.1\|923675_926969_-\|tail	phage tail protein I	G5DEL7	Salmonella_phage	5.1e-269	48.3
WP_033652967.1\|926961_927870_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	2.2e-121	76.2
WP_033652968.1\|927874_928225_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	7.6e-38	67.2
WP_033652969.1\|928221_928857_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.6e-57	54.0
WP_060423425.1\|928942_929407_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	4.5e-38	53.2
WP_033652971.1\|929458_929971_-	lysozyme	A0A218M4K3	Erwinia_phage	7.4e-58	63.3
WP_033641928.1\|929954_930173_-	hypothetical protein	B6SD15	Bacteriophage	8.1e-06	50.9
WP_033641929.1\|930176_930380_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.8e-20	68.7
WP_033641930.1\|930571_930766_-	hypothetical protein	NA	NA	NA	NA
WP_080298842.1\|930829_932926_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	8.5e-193	48.1
WP_033641931.1\|932909_933131_-	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	6.9e-13	56.5
WP_033652973.1\|933209_933515_-	hypothetical protein	NA	NA	NA	NA
WP_047569222.1\|933744_934653_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	3.8e-81	52.7
WP_004932469.1\|934697_935462_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_016929016.1\|935969_937046_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	50.9

DBSCAN-SWA_3

1910574 : 2019289

142

Vibrio_phage(23.96%)

tail,integrase,terminase,holin,protease,plate,head

attL 1902321:1902337|attR 2021939:2021955

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1902321:1902337	attL	NA	NA	NA	NA
WP_033646573.1\|1910574_1912323_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_004928138.1\|1912533_1912992_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_047571655.1\|1913080_1914160_-	porin OmpA	NA	NA	NA	NA
WP_047568282.1\|1914517_1915024_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_033646570.1\|1915253_1915910_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_033646568.1\|1915914_1918050_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_047568279.1\|1918076_1918529_-	YccF domain-containing protein	NA	NA	NA	NA
WP_094887859.1\|1918695_1920750_+	DNA helicase IV	A7KV33	Bacillus_phage	4.8e-15	24.3
WP_015377363.1\|1920782_1921241_-	methylglyoxal synthase	NA	NA	NA	NA
WP_033654217.1\|1921364_1922030_-	DUF2057 family protein	NA	NA	NA	NA
WP_047568277.1\|1922285_1922699_+	CoA-binding protein	NA	NA	NA	NA
WP_033637900.1\|1922756_1923074_-	heat shock protein HspQ	NA	NA	NA	NA
WP_041034466.1\|1923134_1924319_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_047568272.1\|1924386_1925457_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	1.1e-106	52.8
WP_047568270.1\|1925398_1925659_-	excisionase	A0A1V0E5M4	Salmonella_phage	8.4e-18	62.9
WP_080298837.1\|1926093_1926573_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	3.3e-52	71.1
WP_047568258.1\|1928829_1929108_-	hypothetical protein	NA	NA	NA	NA
WP_047568257.1\|1929118_1929436_-	hypothetical protein	NA	NA	NA	NA
WP_141240898.1\|1929584_1929929_+	hypothetical protein	NA	NA	NA	NA
WP_047568254.1\|1929932_1930319_-	helix-turn-helix domain-containing protein	B1B6L9	Salmonella_phage	6.9e-16	64.2
WP_047568252.1\|1930399_1930606_+	regulatory protein	A0A1W6JP24	Morganella_phage	1.7e-05	40.7
WP_047568249.1\|1930667_1931120_+	hypothetical protein	H9C162	Pectobacterium_phage	8.9e-31	57.6
WP_047568246.1\|1931144_1931363_+	hypothetical protein	H9C163	Pectobacterium_phage	9.2e-18	59.4
WP_094859722.1\|1931365_1932064_+	helix-turn-helix domain-containing protein	A0A1W6JP36	Morganella_phage	5.6e-32	70.6
WP_047568241.1\|1932060_1933434_+	hypothetical protein	Q76H51	Enterobacteria_phage	1.8e-114	48.6
WP_047568238.1\|1933478_1933901_+	hypothetical protein	NA	NA	NA	NA
WP_047568234.1\|1933904_1934150_+	hypothetical protein	H9C167	Pectobacterium_phage	5.0e-12	47.6
WP_094859808.1\|1934259_1934781_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.9e-70	78.7
WP_094859723.1\|1934777_1934963_+	hypothetical protein	NA	NA	NA	NA
WP_160208030.1\|1934962_1935370_+	hypothetical protein	F1C5B5	Cronobacter_phage	1.5e-08	33.8
WP_160208029.1\|1935500_1935923_+	hypothetical protein	A0A0M4RTV1	Salmonella_phage	2.3e-09	65.8
WP_138974867.1\|1935915_1936302_+	hypothetical protein	H9C172	Pectobacterium_phage	7.9e-12	35.1
WP_049234898.1\|1936374_1936632_+	hypothetical protein	A0A1V0E5L9	Salmonella_phage	1.2e-16	51.8
WP_138974866.1\|1936738_1937287_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	2.9e-60	66.9
WP_138974865.1\|1937283_1938756_+\|terminase	terminase	G9L6B8	Escherichia_phage	4.8e-235	78.0
WP_138974864.1\|1938782_1938965_-	hypothetical protein	NA	NA	NA	NA
WP_160208028.1\|1939547_1941233_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	1.2e-186	58.5
WP_060430634.1\|1941232_1941529_+	hypothetical protein	Q2A090	Sodalis_phage	7.1e-29	72.9
WP_160208027.1\|1941494_1941758_+	hypothetical protein	V5KSC6	Escherichia_phage	1.2e-11	65.7
WP_160208026.1\|1941768_1942479_+	peptidase	G9L6C4	Escherichia_phage	1.6e-39	52.3
WP_049234910.1\|1942485_1943469_+	phage protein	A0A193GZ49	Enterobacter_phage	1.5e-139	73.4
WP_138974859.1\|1943522_1943969_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	3.6e-32	58.1
WP_160208049.1\|1943989_1944277_+	hypothetical protein	NA	NA	NA	NA
WP_160208025.1\|1944316_1944640_+	hypothetical protein	T1SBJ0	Salmonella_phage	1.6e-21	54.9
WP_160208024.1\|1944639_1945248_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	2.2e-61	60.9
WP_160208023.1\|1945247_1947749_+	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	2.6e-305	61.2
WP_160208022.1\|1947748_1948222_+	hypothetical protein	Q858G2	Salmonella_phage	3.3e-52	65.4
WP_138974854.1\|1948832_1951349_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	7.8e-209	48.0
WP_138974853.1\|1951345_1952815_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	6.3e-94	47.3
WP_160208021.1\|1952819_1955294_+	hypothetical protein	A0A193GZ61	Enterobacter_phage	0.0e+00	74.9
WP_138974851.1\|1955517_1956156_-	hypothetical protein	NA	NA	NA	NA
WP_160208020.1\|1956452_1957157_+	Rha family transcriptional regulator	A0A0P0ZDC0	Stx2-converting_phage	5.1e-41	41.2
WP_060450517.1\|1957195_1957723_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_160208019.1\|1957984_1958686_-	hypothetical protein	A0A0P0ZG86	Escherichia_phage	3.4e-29	41.0
WP_033632346.1\|1959049_1959298_-	hypothetical protein	NA	NA	NA	NA
WP_160208018.1\|1959486_1961736_+	hypothetical protein	G9L6E4	Escherichia_phage	5.7e-62	54.8
WP_160208007.1\|1961735_1962044_+	hypothetical protein	NA	NA	NA	NA
WP_094859778.1\|1962053_1962326_+	hypothetical protein	NA	NA	NA	NA
WP_047568181.1\|1962344_1962578_+\|holin	holin	H9C183	Pectobacterium_phage	1.6e-20	69.6
WP_047568179.1\|1962561_1963077_+	lysozyme	I6PBN2	Cronobacter_phage	2.8e-49	64.7
WP_160208017.1\|1963061_1963436_+	hypothetical protein	A0A248XD11	Klebsiella_phage	2.9e-11	40.3
WP_160208016.1\|1963432_1963693_+	hypothetical protein	A0A248XCT8	Klebsiella_phage	1.9e-14	53.5
WP_160208015.1\|1963770_1964382_-	DNA methyltransferase	G8C7S6	Escherichia_phage	6.3e-80	69.0
WP_075686446.1\|1964485_1964737_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	9.3e-14	48.8
WP_160208014.1\|1964776_1965793_-	recombination protein RecT	Q858E1	Salmonella_phage	3.2e-153	81.6
WP_104874741.1\|1965802_1966717_-	endonuclease	Q858E0	Salmonella_phage	1.2e-130	74.3
WP_160208013.1\|1966716_1967022_-	hypothetical protein	NA	NA	NA	NA
WP_121513954.1\|1967024_1967168_-	DUF2985 domain-containing protein	T1SA20	Salmonella_phage	2.0e-05	46.5
WP_147839100.1\|1967442_1968039_-	helix-turn-helix domain-containing protein	G9L6A6	Escherichia_phage	4.3e-49	52.3
WP_160208012.1\|1968187_1968406_+	hypothetical protein	Q858D6	Salmonella_phage	8.6e-16	58.0
WP_160208011.1\|1968549_1968750_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.3e-13	55.0
WP_085286486.1\|1968742_1969042_+	hypothetical protein	NA	NA	NA	NA
WP_064290116.1\|1969041_1969992_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	4.1e-78	59.7
WP_160211296.1\|1969903_1970464_+	replication protein	A0A0U2JGJ0	Escherichia_phage	9.3e-22	37.8
WP_160208048.1\|1970727_1971027_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.6e-36	71.7
WP_160208009.1\|1971029_1971242_+	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	2.9e-08	56.8
WP_160208008.1\|1971252_1971663_+	hypothetical protein	F1C5B6	Cronobacter_phage	2.5e-08	44.4
WP_160208047.1\|1971677_1972196_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	2.9e-70	78.7
WP_094859723.1\|1972192_1972378_+	hypothetical protein	NA	NA	NA	NA
WP_094859724.1\|1972377_1972740_+	hypothetical protein	NA	NA	NA	NA
WP_094859725.1\|1972736_1973141_+	hypothetical protein	NA	NA	NA	NA
WP_047568227.1\|1973536_1974133_+	DUF1367 family protein	H9C173	Pectobacterium_phage	7.8e-75	66.2
WP_094859727.1\|1974141_1974447_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.5e-26	57.3
WP_060433296.1\|1974601_1974898_+	hypothetical protein	NA	NA	NA	NA
WP_094859728.1\|1974926_1975424_+	hypothetical protein	NA	NA	NA	NA
WP_094859729.1\|1975434_1975662_+	hypothetical protein	NA	NA	NA	NA
WP_047568217.1\|1975665_1977288_+\|head,tail	bacteriophage head to tail connecting protein	A0A2H4J3N6	uncultured_Caudovirales_phage	7.3e-176	58.1
WP_047568214.1\|1977287_1977521_+	hypothetical protein	NA	NA	NA	NA
WP_094859730.1\|1977507_1978332_+	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	8.0e-46	42.5
WP_047568208.1\|1978347_1978752_+	phage family protein	Q716B1	Shigella_phage	1.0e-41	68.8
WP_047571653.1\|1978962_1979874_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	3.2e-43	39.0
WP_047568204.1\|1979929_1980493_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	2.1e-50	50.3
WP_094859731.1\|1980495_1982490_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	5.8e-183	48.6
WP_094859732.1\|1982492_1982942_+	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	2.0e-22	43.6
WP_060435333.1\|1982944_1983472_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	4.2e-08	43.4
WP_094887860.1\|1983471_1986165_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	7.4e-282	56.8
WP_094859734.1\|1986164_1986632_+	hypothetical protein	G9L6D4	Escherichia_phage	2.3e-34	56.6
WP_094859735.1\|1986647_1986851_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_141240899.1\|1986886_1987159_-	hypothetical protein	NA	NA	NA	NA
WP_141240900.1\|1987168_1987480_-	hypothetical protein	NA	NA	NA	NA
WP_094859736.1\|1989360_1990236_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.8e-27	43.0
WP_094859737.1\|1990235_1991045_-\|tail	tail fiber protein	E5FJ29	Escherichia_phage	4.8e-19	44.7
WP_094859738.1\|1991046_1991631_-	YmfQ family protein	A0A2I7S9L6	Vibrio_phage	6.7e-47	47.7
WP_094859739.1\|1991615_1992689_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	3.2e-103	52.0
WP_094859740.1\|1992678_1993128_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	1.0e-26	43.4
WP_094859741.1\|1993124_1993664_-\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	1.3e-31	41.8
WP_094859742.1\|1993654_1994740_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	3.6e-94	49.4
WP_094859743.1\|1994732_1995992_-	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	3.4e-88	42.4
WP_094859744.1\|1995991_1997887_-\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	1.5e-66	31.5
WP_094859745.1\|1997985_1998369_-	hypothetical protein	A0A0C4UR03	Shigella_phage	1.1e-10	43.1
WP_094859746.1\|1998372_1998723_-\|tail	phage tail protein	A0A2I7S9D5	Vibrio_phage	2.2e-21	43.5
WP_094859747.1\|1998732_2000211_-\|tail	phage tail protein	M1Q565	Vibrio_phage	6.3e-150	55.2
WP_094859748.1\|2000213_2000432_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_094859749.1\|2000412_2001033_-	hypothetical protein	M1PJ94	Vibrio_phage	5.8e-41	43.8
WP_094859750.1\|2001029_2001572_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.1e-54	58.7
WP_094859751.1\|2001571_2002009_-	DUF1320 domain-containing protein	M1PVU7	Vibrio_phage	1.9e-38	55.9
WP_141240901.1\|2002005_2002479_-	hypothetical protein	NA	NA	NA	NA
WP_094859753.1\|2002555_2003470_-\|head	phage head protein	M4MB71	Vibrio_phage	1.5e-101	60.2
WP_094859754.1\|2003469_2004429_-	peptidase	M1Q578	Vibrio_phage	2.7e-85	53.0
WP_094859755.1\|2004640_2005483_-	hypothetical protein	M4M9M5	Vibrio_phage	5.6e-95	58.8
WP_094859756.1\|2005584_2007165_-	DUF935 domain-containing protein	M4M9P3	Vibrio_phage	2.1e-167	58.9
WP_094859809.1\|2007164_2008733_-	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.2e-202	70.6
WP_094859757.1\|2008732_2009308_-	DUF3486 family protein	M4MCR3	Vibrio_phage	8.0e-53	62.4
WP_094859758.1\|2009297_2009570_-	hypothetical protein	NA	NA	NA	NA
WP_094859810.1\|2009572_2009860_-	hypothetical protein	A0A0C4UR00	Shigella_phage	2.7e-25	61.7
WP_094859759.1\|2009870_2010173_-	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_094859760.1\|2010153_2010387_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_094859761.1\|2010383_2010992_-	hypothetical protein	NA	NA	NA	NA
WP_094859762.1\|2010992_2011235_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	5.6e-24	65.8
WP_094859763.1\|2011238_2011823_-	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	5.5e-41	48.1
WP_094859764.1\|2011930_2012413_-	hypothetical protein	NA	NA	NA	NA
WP_094859765.1\|2012420_2012813_-	transcriptional regulator	A0A0C4UR27	Shigella_phage	1.5e-39	64.0
WP_094859766.1\|2012805_2013333_-	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	3.9e-30	43.0
WP_094859767.1\|2013329_2013884_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.4e-30	40.0
WP_094859811.1\|2013963_2014152_-	hypothetical protein	NA	NA	NA	NA
WP_094859768.1\|2014162_2014777_-	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	1.7e-64	61.1
WP_094859769.1\|2014785_2014998_-	hypothetical protein	NA	NA	NA	NA
WP_094859770.1\|2015000_2015198_-	hypothetical protein	NA	NA	NA	NA
WP_094859771.1\|2015194_2016151_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-84	52.5
WP_094859772.1\|2016162_2018172_-	DDE endonuclease	A0A2I7S9A8	Vibrio_phage	1.5e-202	52.5
WP_094859812.1\|2018168_2018432_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	8.0e-16	55.2
WP_094859773.1\|2018563_2019289_+	helix-turn-helix transcriptional regulator	A0A2I7S9A5	Vibrio_phage	1.7e-71	52.6
2021939:2021955	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2022834 : 2032219

uncultured_Caudovirales_phage(30.0%)

holin,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094859774.1\|2022834_2023611_+	hypothetical protein	A0A0P0J0J7	Acinetobacter_phage	6.2e-40	46.8
WP_094859775.1\|2023638_2023830_+	hypothetical protein	NA	NA	NA	NA
WP_019456267.1\|2023890_2024232_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	4.5e-19	46.4
WP_094859776.1\|2024228_2025839_+\|terminase	phage terminase large subunit	A0A2H4JCA3	uncultured_Caudovirales_phage	6.0e-223	69.3
WP_094859777.1\|2025854_2028080_+	hypothetical protein	A0A249Y2B0	Serratia_phage	4.9e-122	44.0
WP_160208007.1\|2028079_2028388_+	hypothetical protein	NA	NA	NA	NA
WP_094859778.1\|2028397_2028670_+	hypothetical protein	NA	NA	NA	NA
WP_047568181.1\|2028688_2028922_+\|holin	holin	H9C183	Pectobacterium_phage	1.6e-20	69.6
WP_047568179.1\|2028905_2029421_+	lysozyme	I6PBN2	Cronobacter_phage	2.8e-49	64.7
WP_094859779.1\|2029405_2029780_+	hypothetical protein	A0A248XD11	Klebsiella_phage	1.5e-12	45.2
WP_094859780.1\|2029776_2030034_+	hypothetical protein	A0A248XCT8	Klebsiella_phage	2.3e-15	53.5
WP_094859813.1\|2030151_2030550_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	4.6e-23	50.4
WP_033646563.1\|2030805_2031084_+	acylphosphatase	NA	NA	NA	NA
WP_004928095.1\|2031118_2031448_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_004928091.1\|2031559_2032219_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.7e-41	48.8

DBSCAN-SWA_5

2319099 : 2339389

Moraxella_phage(100.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094859794.1\|2319099_2320518_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_004931526.1\|2320664_2320874_-	hypothetical protein	NA	NA	NA	NA
WP_033638276.1\|2321653_2322046_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_047567868.1\|2322050_2322650_+	hypothetical protein	NA	NA	NA	NA
WP_004931517.1\|2322705_2322945_-	YebV family protein	NA	NA	NA	NA
WP_033638278.1\|2323080_2324016_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_094859814.1\|2324036_2326379_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_033653896.1\|2326524_2327289_-	molecular chaperone	NA	NA	NA	NA
WP_060427707.1\|2327313_2327868_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_160208004.1\|2327867_2328371_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033638282.1\|2328373_2328913_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_094859796.1\|2329187_2330624_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033638759.1\|2330725_2333356_-	PqiB family protein	NA	NA	NA	NA
WP_039567108.1\|2333324_2334572_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_033638286.1\|2334827_2335325_+	GAF domain-containing protein	NA	NA	NA	NA
WP_033638287.1\|2335421_2336132_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033638289.1\|2336151_2338200_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.7e-85	33.7
WP_033638291.1\|2338510_2339389_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2370320 : 2385605

Tupanvirus(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025159696.1\|2370320_2372249_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-132	37.7
WP_048233542.1\|2372252_2372804_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_004931418.1\|2372902_2373100_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004931417.1\|2373143_2373500_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_151498502.1\|2373566_2373662_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_004931416.1\|2373908_2374892_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	2.2e-34	38.9
WP_047567827.1\|2374906_2377294_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.8e-05	25.0
WP_004931414.1\|2377298_2377595_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0
WP_033638328.1\|2378144_2378561_+	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_033638330.1\|2378739_2379747_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_033638331.1\|2379792_2380344_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	9.8e-16	34.4
WP_047567824.1\|2380349_2381105_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2H4PQG7	Staphylococcus_phage	9.7e-06	27.5
WP_033638335.1\|2381501_2382656_+	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	1.2e-28	25.2
WP_033638338.1\|2382642_2383623_+	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	B9UDL7	Salmonella_phage	3.1e-36	32.4
WP_047571640.1\|2383622_2385605_+	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.1e-21	25.4

DBSCAN-SWA_7

3930048 : 3991553

Salmonella_phage(48.65%)

tRNA,tail,integrase,holin,capsid,portal,plate,head

attL 3955944:3955961|attR 3996502:3996519

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004936551.1\|3930048_3930375_-\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	6.6e-12	39.7
WP_033655002.1\|3930667_3932167_+	chitinase	U5KBK0	Clostera_anastomosis_granulovirus	3.3e-21	28.3
WP_033635481.1\|3932253_3933195_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_033655003.1\|3933599_3934193_+	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.8e-23	36.2
WP_033655004.1\|3934450_3935401_+	transaldolase	A0A127KNC6	Cyanophage	5.1e-12	34.1
WP_047571046.1\|3935419_3937414_+	transketolase	NA	NA	NA	NA
WP_033635486.1\|3937464_3938040_-	GDP-mannose pyrophosphatase NudK	NA	NA	NA	NA
WP_047571044.1\|3938430_3940107_+	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
WP_094860002.1\|3940268_3940901_+	response regulator	NA	NA	NA	NA
WP_047571040.1\|3940933_3941212_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047571038.1\|3941505_3944643_+	multidrug efflux RND transporter permease AcrD	NA	NA	NA	NA
WP_100396732.1\|3944769_3944829_-	protein YpfM	NA	NA	NA	NA
WP_047571036.1\|3945113_3945545_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_033648805.1\|3946075_3946627_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_033648806.1\|3946881_3947268_+	ArsC family reductase	NA	NA	NA	NA
WP_033648807.1\|3947264_3948392_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_033648808.1\|3948388_3949063_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_004941720.1\|3949065_3949251_+	YpfN family protein	NA	NA	NA	NA
WP_047571029.1\|3949281_3949971_-	esterase	NA	NA	NA	NA
WP_047571027.1\|3950091_3952104_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_033635497.1\|3952160_3953024_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_004941708.1\|3953233_3953947_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	9.1e-38	35.7
WP_033648812.1\|3954117_3955170_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_033635499.1\|3955186_3956068_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
3955944:3955961	attL	NA	NA	NA	NA
WP_072269954.1\|3957605_3957857_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_160207988.1\|3957899_3959021_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	8.4e-131	65.3
WP_156865760.1\|3959144_3960368_+\|tail	phage tail protein	A0A0M4S6M1	Salmonella_phage	2.0e-146	64.7
WP_049235263.1\|3960380_3960893_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	1.4e-56	64.7
WP_160207987.1\|3960959_3961280_+\|tail	phage tail assembly protein	A0A0M4RCV2	Salmonella_phage	2.0e-16	54.0
WP_072269958.1\|3961294_3961411_+\|tail	GpE family phage tail protein	A0A0M3ULA8	Salmonella_phage	1.9e-06	59.5
WP_160207986.1\|3961407_3964557_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	3.5e-126	35.7
WP_048795106.1\|3964561_3964999_+\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	4.5e-48	62.9
WP_094887874.1\|3965116_3965539_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	4.7e-18	40.0
WP_160207985.1\|3965541_3968136_-	hypothetical protein	Q858V4	Yersinia_virus	2.5e-61	55.1
WP_160207984.1\|3968145_3968673_-\|tail	phage tail protein I	Q37841	Escherichia_phage	2.4e-59	62.6
WP_094887877.1\|3968665_3969577_-\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	1.3e-97	62.6
WP_094887890.1\|3969573_3969900_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.9e-20	44.4
WP_094887878.1\|3969920_3970550_-\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	4.3e-68	64.7
WP_048795111.1\|3970546_3971188_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	2.9e-43	48.5
WP_094888675.1\|3971177_3971672_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	6.5e-27	36.1
WP_094887880.1\|3971665_3971995_-	hypothetical protein	NA	NA	NA	NA
WP_060433923.1\|3972150_3972537_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_094887882.1\|3972533_3972923_-	M15 family metallopeptidase	S4TRL9	Salmonella_phage	4.6e-60	83.7
WP_080434096.1\|3972915_3973131_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_048795117.1\|3973196_3973592_-	hypothetical protein	NA	NA	NA	NA
WP_048795118.1\|3973608_3973812_-	LysM peptidoglycan-binding domain-containing protein	E5G6M9	Salmonella_phage	1.6e-16	61.2
WP_060417679.1\|3973811_3974306_-\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	3.4e-44	58.5
WP_094887883.1\|3974405_3975299_-	hypothetical protein	A0A0M4R523	Salmonella_phage	6.6e-62	55.5
WP_094888671.1\|3975349_3976402_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.8e-133	68.2
WP_049191601.1\|3976438_3977284_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	1.9e-66	49.3
WP_075686370.1\|3977431_3979153_+	oxidoreductase	A0A0M4S6K7	Salmonella_phage	6.5e-223	67.8
WP_094887884.1\|3979155_3980247_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	4.5e-145	70.8
WP_094888669.1\|3980697_3981276_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	8.6e-71	66.5
WP_094888667.1\|3981235_3982336_-	beta family protein	A0A0U2S621	Escherichia_phage	1.7e-139	64.5
WP_094888665.1\|3982527_3982893_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_049191603.1\|3982889_3983165_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	1.4e-15	46.4
WP_060417685.1\|3983234_3983930_-	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	1.2e-71	58.9
WP_094887886.1\|3984078_3986562_-	replication endonuclease	F1BUS0	Erwinia_phage	1.0e-136	41.1
WP_094887891.1\|3986561_3986897_-	hypothetical protein	NA	NA	NA	NA
WP_094887887.1\|3987094_3987364_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	5.1e-10	46.9
WP_094887888.1\|3987360_3988185_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.5e-63	46.9
WP_094888630.1\|3988340_3988550_-	hypothetical protein	NA	NA	NA	NA
WP_094888631.1\|3988834_3989110_-	hypothetical protein	NA	NA	NA	NA
WP_133160102.1\|3989121_3989316_-	hypothetical protein	NA	NA	NA	NA
WP_143128927.1\|3989299_3989557_-	hypothetical protein	NA	NA	NA	NA
WP_094888633.1\|3989587_3989827_-	hypothetical protein	NA	NA	NA	NA
WP_143128928.1\|3989837_3990098_-	hypothetical protein	NA	NA	NA	NA
WP_049233880.1\|3990199_3990508_+	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	2.1e-28	63.4
WP_094888635.1\|3990572_3991553_+\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	3.3e-91	51.5
3996502:3996519	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4177973 : 4241737

Salmonella_phage(45.0%)

tRNA,tail,integrase,holin,capsid,portal,plate,head

attL 4198000:4198015|attR 4242706:4242721

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033648933.1\|4177973_4178480_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	7.7e-07	41.7
WP_033648934.1\|4178597_4179662_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_047570892.1\|4179697_4180354_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_033635619.1\|4180357_4181725_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_033648937.1\|4181743_4182637_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_033648938.1\|4182804_4183653_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_072021640.1\|4183904_4185341_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_033635622.1\|4185432_4185693_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.9e-18	53.5
WP_004929169.1\|4185738_4186119_-	holo-ACP synthase	NA	NA	NA	NA
WP_047570828.1\|4186118_4186850_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_004929165.1\|4186913_4187645_-	DNA repair protein RecO	NA	NA	NA	NA
WP_004929162.1\|4187651_4188560_-	GTPase Era	NA	NA	NA	NA
WP_004929158.1\|4188556_4189237_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	9.6e-21	31.3
WP_033635624.1\|4189473_4190451_-	signal peptidase I	NA	NA	NA	NA
WP_033635625.1\|4190483_4192283_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.2e-23	25.5
WP_047570824.1\|4192803_4193640_+	hypothetical protein	NA	NA	NA	NA
WP_047570822.1\|4193636_4194113_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_033635628.1\|4194109_4195069_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_016929795.1\|4195068_4195722_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_004929136.1\|4195752_4196328_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_047570820.1\|4196506_4198144_+	L-aspartate oxidase	NA	NA	NA	NA
4198000:4198015	attL	NA	NA	NA	NA
WP_047570819.1\|4198182_4198962_-	methyltransferase	NA	NA	NA	NA
WP_016929798.1\|4199061_4200384_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	3.6e-40	27.3
WP_047570817.1\|4200436_4201192_-	ankyrin repeat domain-containing protein	Q9JMM8	Wolbachia_phage	2.2e-05	39.2
WP_047570815.1\|4201184_4202147_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_004929114.1\|4202331_4202715_-	autonomous glycyl radical cofactor GrcA	C3V1I5	Escherichia_virus	6.1e-33	70.2
WP_033635636.1\|4203060_4203744_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	2.5e-53	47.9
WP_025159545.1\|4203800_4204385_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_019452304.1\|4204510_4205389_+	NAD(+) kinase	NA	NA	NA	NA
WP_047570813.1\|4205475_4207137_+	DNA repair protein RecN	NA	NA	NA	NA
WP_072269954.1\|4207249_4207501_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_049235265.1\|4207543_4208665_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	2.9e-131	65.6
WP_156865760.1\|4208788_4210012_+\|tail	phage tail protein	A0A0M4S6M1	Salmonella_phage	2.0e-146	64.7
WP_094887871.1\|4210024_4210537_+\|tail	phage major tail tube protein	A0A0M5M1I5	Salmonella_phage	3.1e-56	64.1
WP_094887872.1\|4210603_4210924_+\|tail	phage tail protein	A0A0M4RCV2	Salmonella_phage	2.6e-16	53.0
WP_072269958.1\|4210938_4211055_+\|tail	GpE family phage tail protein	A0A0M3ULA8	Salmonella_phage	1.9e-06	59.5
WP_094887873.1\|4211051_4214201_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.0e-129	36.8
WP_048795106.1\|4214205_4214643_+\|tail	phage tail protein	A0A1J0I2L5	Salmonella_phage	4.5e-48	62.9
WP_094887874.1\|4214760_4215183_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	4.7e-18	40.0
WP_160207985.1\|4215185_4217780_-	hypothetical protein	Q858V4	Yersinia_virus	2.5e-61	55.1
WP_160207984.1\|4217789_4218317_-\|tail	phage tail protein I	Q37841	Escherichia_phage	2.4e-59	62.6
WP_094887877.1\|4218309_4219221_-\|plate	baseplate assembly protein	A0A0M4REB7	Salmonella_phage	1.3e-97	62.6
WP_094887890.1\|4219217_4219544_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.9e-20	44.4
WP_094887878.1\|4219564_4220194_-\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	4.3e-68	64.7
WP_048795111.1\|4220190_4220832_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	2.9e-43	48.5
WP_094888675.1\|4220821_4221316_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	6.5e-27	36.1
WP_094887880.1\|4221309_4221639_-	hypothetical protein	NA	NA	NA	NA
WP_060433923.1\|4221794_4222181_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_094887882.1\|4222177_4222567_-	M15 family metallopeptidase	S4TRL9	Salmonella_phage	4.6e-60	83.7
WP_080434096.1\|4222559_4222775_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_048795117.1\|4222840_4223236_-	hypothetical protein	NA	NA	NA	NA
WP_048795118.1\|4223252_4223456_-	LysM peptidoglycan-binding domain-containing protein	E5G6M9	Salmonella_phage	1.6e-16	61.2
WP_060417679.1\|4223455_4223950_-\|head	head completion/stabilization protein	A0A0M4QWR7	Salmonella_phage	3.4e-44	58.5
WP_094887883.1\|4224049_4224943_-	hypothetical protein	A0A0M4R523	Salmonella_phage	6.6e-62	55.5
WP_094888671.1\|4224993_4226046_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.8e-133	68.2
WP_049191601.1\|4226082_4226928_-\|capsid	GPO family capsid scaffolding protein	A0A1J0I2E9	Salmonella_phage	1.9e-66	49.3
WP_075686370.1\|4227075_4228797_+	oxidoreductase	A0A0M4S6K7	Salmonella_phage	6.5e-223	67.8
WP_094887884.1\|4228799_4229891_+\|portal	phage portal protein	A0A0M5M1H6	Salmonella_phage	4.5e-145	70.8
WP_094888669.1\|4230341_4230920_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	8.6e-71	66.5
WP_094888667.1\|4230879_4231980_-	beta family protein	A0A0U2S621	Escherichia_phage	1.7e-139	64.5
WP_094888665.1\|4232171_4232537_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_049191603.1\|4232533_4232809_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	1.4e-15	46.4
WP_060417685.1\|4232878_4233574_-	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	1.2e-71	58.9
WP_094887886.1\|4233722_4236206_-	replication endonuclease	F1BUS0	Erwinia_phage	1.0e-136	41.1
WP_094887891.1\|4236205_4236541_-	hypothetical protein	NA	NA	NA	NA
WP_094887887.1\|4236738_4237008_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	5.1e-10	46.9
WP_094887888.1\|4237004_4237829_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.5e-63	46.9
WP_049301747.1\|4237983_4238193_-	hypothetical protein	NA	NA	NA	NA
WP_094887889.1\|4238590_4238854_-	hypothetical protein	NA	NA	NA	NA
WP_133160102.1\|4238865_4239060_-	hypothetical protein	NA	NA	NA	NA
WP_133160103.1\|4239043_4239301_-	hypothetical protein	NA	NA	NA	NA
WP_143128935.1\|4239536_4239884_-	hypothetical protein	NA	NA	NA	NA
WP_072271263.1\|4239972_4240275_+	helix-turn-helix domain-containing protein	A0A0M5M1I9	Salmonella_phage	6.8e-27	59.6
WP_049232591.1\|4240411_4240756_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_048794733.1\|4240762_4241737_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	2.2e-79	46.7
4242706:4242721	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047686

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2947 : 32983

Salmonella_phage(33.33%)

transposase,integrase

attL 16536:16549|attR 22609:22622

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197635.1\|2947_3742_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_017899884.1\|3939_4956_-	hypothetical protein	NA	NA	NA	NA
WP_025380813.1\|5307_5667_-	hypothetical protein	NA	NA	NA	NA
WP_013023785.1\|5871_6177_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_001568025.1\|6178_6397_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001261282.1\|6984_7215_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|7211_7628_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|7701_9264_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|9248_10271_+	helicase UvrD	NA	NA	NA	NA
WP_000427619.1\|11804_12809_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000429836.1\|12887_13322_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294663.1\|13393_13744_+	mercuric transport protein MerT	NA	NA	NA	NA
WP_000732292.1\|13757_14033_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001340589.1\|14068_14491_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000105636.1\|14542_16237_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|16254_16617_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
16536:16549	attL	NA	NA	NA	NA
WP_000993386.1\|16613_16850_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_000204520.1\|16846_17554_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000935452.1\|17592_18897_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001067855.1\|18943_19648_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014343468.1\|19687_20161_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_013213985.1\|20283_21264_+\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_004199234.1\|21539_22421_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213989.1\|24280_24706_-	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3
22609:22622	attR	NA	NA	NA	NA
WP_013213990.1\|24816_25095_-	hypothetical protein	NA	NA	NA	NA
WP_001161490.1\|26637_27198_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|27201_30168_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001516695.1\|30653_31310_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001493761.1\|31591_32983_-\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047685

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047686

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection