CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047669	Klebsiella aerogenes strain HNHF1 chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas14j	0	2	4	0
NZ_CP047668	Klebsiella aerogenes strain HNHF1 plasmid pHNHF1_NDM-9, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047669_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047669_1

611021-611094

Orphan

Consensus_repeat	Method
CGGGTGGCGGCTACGCCTTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047669_1

>merge|NZ_CP047669|1|611021-611094|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCGGGCTACCCGCGGTGCCGTTTTTTTGTCGGGTGGCGGCTAACGCCTTACCC

>NZ_CP047669|1|1|611021-611094|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCG	GGCTACCCGCGGTGCCGTTTTTTTGT
CGGGTGGCGGCTAACGCCTTACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047669.1\|WP_032707652.1\|602676_603789_+\|anion-transporter	unknown	unknown	gnl\|CDD\|238537
NZ_CP047669.1\|WP_015704827.1\|605092_606469_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP047669.1\|WP_160183956.1\|616674_617940_-\|DUF1479-domain-containing-protein	unknown	unknown	gnl\|CDD\|369327
NZ_CP047669.1\|WP_015367574.1\|602212_602680_+\|manganese-binding-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927
NZ_CP047669.1\|WP_015367567.1\|609412_611005_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP047669.1\|WP_015704835.1\|622536_623292_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NZ_CP047669.1\|WP_160183955.1\|606529_607246_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP047669.1\|WP_045374148.1\|614006_615308_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP047669.1\|WP_015367569.1\|607337_608252_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182341
NZ_CP047669.1\|WP_015367564.1\|615604_616678_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP047669.1\|WP_015704836.1\|623291_624527_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NZ_CP047669.1\|WP_015704829.1\|608450_609233_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP047669.1\|WP_015704824.1\|600054_601632_-\|phosphoethanolamine-transferase	unknown	unknown	gnl\|CDD\|225105
NZ_CP047669.1\|WP_015704837.1\|624706_625648_+\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319
NZ_CP047669.1\|WP_015704830.1\|611627_613991_-\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418
NZ_CP047669.1\|WP_015704834.1\|621481_622381_-\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NZ_CP047669.1\|WP_126026381.1\|619045_621478_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NZ_CP047669.1\|WP_015367575.1\|601900_602026_-\|manganase-accumulation-protein-MntS	unknown	unknown	gnl\|CDD\|380222
NZ_CP047669.1\|WP_015704826.1\|603896_604937_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381317
NZ_CP047669.1\|WP_045411194.1\|618079_618895_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905

Protein	Function_ID	Function_description	E-value
NZ_CP047669.1\|WP_032707652.1\|602676_603789_+\|anion-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	1.49792e-91
NZ_CP047669.1\|WP_015704827.1\|605092_606469_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.47116e-157
NZ_CP047669.1\|WP_160183956.1\|616674_617940_-\|DUF1479-domain-containing-protein	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
NZ_CP047669.1\|WP_015367574.1\|602212_602680_+\|manganese-binding-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	4.05373e-90
NZ_CP047669.1\|WP_015367567.1\|609412_611005_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP047669.1\|WP_015704835.1\|622536_623292_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	0
NZ_CP047669.1\|WP_160183955.1\|606529_607246_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	3.26652e-62
NZ_CP047669.1\|WP_045374148.1\|614006_615308_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.0283e-74
NZ_CP047669.1\|WP_015367569.1\|607337_608252_-\|L,D-transpeptidase	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
NZ_CP047669.1\|WP_015367564.1\|615604_616678_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.97726e-59
NZ_CP047669.1\|WP_015704836.1\|623291_624527_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NZ_CP047669.1\|WP_015704829.1\|608450_609233_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	1.80456e-72
NZ_CP047669.1\|WP_015704824.1\|600054_601632_-\|phosphoethanolamine-transferase	gnl\|CDD\|225105	COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only].	6.8228e-111
NZ_CP047669.1\|WP_015704837.1\|624706_625648_+\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0
NZ_CP047669.1\|WP_015704830.1\|611627_613991_-\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NZ_CP047669.1\|WP_015704834.1\|621481_622381_-\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	2.42439e-138
NZ_CP047669.1\|WP_126026381.1\|619045_621478_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NZ_CP047669.1\|WP_015367575.1\|601900_602026_-\|manganase-accumulation-protein-MntS	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	8.63856e-23
NZ_CP047669.1\|WP_015704826.1\|603896_604937_+\|aldo/keto-reductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	0
NZ_CP047669.1\|WP_045411194.1\|618079_618895_-\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	4.20487e-67

>NZ_CP047669.1|WP_015367567.1|609412_611005_+|ABC-F-family-ATPase
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQAFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNGPLFKGVNLLLEVGEKLAVLGTNGVGKSTMLKTLVGELEADNGTVKWSENARIGYYAQDHAEDFENDLTVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPERVIDFSGNYEDYLRSKGIE
>NZ_CP047669.1|WP_015704829.1|608450_609233_-|tyrosine-protein-phosphatase
MTTRTSHPAFISLQGGINFRDLGGQRAADGRRVRSGKLLRSGSLHNMTPEDLNHLSAIPLSRVLDYRDPTEVNRSPDRLNSEAFYLNAPANPLSSSVNAKVTEFNAATLNTMDGEQFMLQLYRQLPFNNAAYRQLTQWLMEPFDGALLQHCAVGKDRTGVGCALTLFALGCDSNTVMEEYLLTQGMLAQVEGFLLDTFGEGLNEHGRKNLAAIMTVQESYLATALSSIEQRYGHVDRWLEQEYRLTPQAREALQSRLLED
>NZ_CP047669.1|WP_015367569.1|607337_608252_-|L,D-transpeptidase
MKLSTLLAAAFAIVGFCNTASAVTYPLPTDGSRLIGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAEGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYVEVHNPLSTTEAQFKGGEIVPISLTQAVQSVTSQPDVDQSVMDQAIQNRSGMPVRLN
>NZ_CP047669.1|WP_160183955.1|606529_607246_+|GntR-family-transcriptional-regulator
MTAKYLNIAREIKKRIISQQYPASAPLPDQFALAAEFNTCRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGATKTWEHLGEVQSEVVRFELRFPSEKEQSSLLIDADAPVYDFVRLRLLNGEPISLDLTVMPVALVPGLNKSHLQSSVFRYVQETLGLKLMGSYRVVRAIKPDELDKLHLNCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGVILVNNG
>NZ_CP047669.1|WP_015704827.1|605092_606469_+|glycoside-hydrolase-family-1-protein
MKDKLPANFLWGNSVSSMQTEGAWNEGGKGMSVYDIREPSEFASDWKVATDSYHRFREDFDLMQDLGMNCYRFQIAWSRVCPQGDGEFNEEGIAFYHQFIDELIARGIEPMICLYHFDMPLSLAERYNGFTDRRVMDAFIRYGQKMIDCYGDKVKYWLTFNEQNLYHSPEAFLITGYLRGDKTLRELYQIQHHVMMAHVHLTDYLHQAKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAREGFDDIYRPEDIALMARVKVDYLAFSYYASRTLNSDAIPPGTAVNNYMLFGNQDNPYLKATEWNWQIDPLGFRTIITRYYNDWRLPVFPIENGIGVIESWDGENQVADDYRIAYHRDHINAMKAAMFEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRENHDLKDLKRVPKKSYAWLKRVIHSNGEEM
>NZ_CP047669.1|WP_015704826.1|603896_604937_+|aldo/keto-reductase
MRYQKLGNTGLFVSELCLGTMTFGGEEGMWGKIGQLRQAEAEQLVGSALDAGINFIDTANVYSEGRSEEITGQALKNLKIPRENVVVATKVFGETGTAGVNSRGSSRYHIMGSVKESLRRLQLDHIDLYQLHGFDPATPIEETLSALDTLVQQGHVRYIGVSNWAAWQIAKALGIAERLGLSRFASLQAYYTIAGRELERELVPMMQSEGLGLMVWSPLAGGLLSGKYRRDGQAEAGGRRLEFDFPPVNKDRAFDCIDVMQVIAEAKGVSVAQIALAWLLHQPAVTSVIIGAKRAEQLQDNIAATAIRLSEDELRQLDAVSALPREYPGWMLERQGEYRRKQLDAQ
>NZ_CP047669.1|WP_032707652.1|602676_603789_+|anion-transporter
MNLPLVQSLARDRFLHLLLLIAVILSLFVPFAPQRWGQAIDWHTIITLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFLAFIGQMLPLAAAMMITLLVLCWFCFPAARLNYQSSDKAPEWRPRLVWSCLAFYLIFLAALEMKQELWGLSIIAVGFLLLARAVIINVDWSLLLVFMAMFIDVHLLTQLPVLQQWLNDVGQLSHGGLWLTAIGLSQFISNVPSTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAGDRRIWWRFHLYSIPLLIWAALTGYAMLALWR
>NZ_CP047669.1|WP_015367574.1|602212_602680_+|manganese-binding-transcriptional-regulator-MntR
MNRRAGKPITKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAHESRERHQIVENFLLAIGVSPEIARRDAEGMEHHVSEETLAQFKLFTQRLHAE
>NZ_CP047669.1|WP_015367575.1|601900_602026_-|manganase-accumulation-protein-MntS
MNEFKRCLNVFSHSPFKVRLMLIGMLCDMINGKPQQDKPNH
>NZ_CP047669.1|WP_015704824.1|600054_601632_-|phosphoethanolamine-transferase
MNVTLKETLAARRLALNPWTGFYFLQSLLINLALGYEFSLLYTVAFTCVLHLLWRTFPRVQKGVVGLYSLLAAMYYPFGQAYGAPNFNTLLALHATNVEESTEILTIFPWYNYLLAVFIFALGVIAVRRKPQPPARLGKVEYLGLLFSIGIFFLQPVQNLAWGGVFKVIDSGYPAVRFVKDVIVNNNEVLDEQARMAQLANMKDSWHVLAVKPKYHLYVVVIGESARRDALGAFGGHWDNTPFASSVNGYLFKNYVAASGSTQKSLGLTLNRVVYGKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVQFLKNGDFEANKNTQDEQLLKLTEQVLSVERSQPQLIVLHIMGSHPQACDRTKGKYTTFVQSKETSCYLYSVTQTDALLAKLYGQLQNSGSSFSLTYFSDHGLAFKERGKAVQYLAHDDKYQQNFQVPFMVLSSDDKAHKMIKARRSANDFLSFFSQWTGISAQEITPRYRFISEQKAGPVYITNFQLQKVDYNHLGSDEFTVN
>NZ_CP047669.1|WP_015704830.1|611627_613991_-|glycoside-hydrolase-family-31-protein
MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQMSEADDTLTIATRQLRVTVHQPLWLEWSYRDEAGEWQTLANDRPTSAYLANAHGDGVAHYLSRRKDERFYGLGEKAGDLQRNGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAERGLFIRDSQTDAPERSSFWDDEGSHLDFTNPHTVTWWQEGVTTQLLEMGIDSTWNDNNEYEVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNTRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPEITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDTQTFAECDDFMLGRDLLVASVVEPGARQRQLWLPDNQDGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERINHVDAQKDDRRELQLFPLKGTGSTRGLLFEDDGESWGYKEGDALWLEWEMTCSANSINLKLDACGNYRPAWKALKLSLPAGEKRQLLVNGVEGTEWRL
>NZ_CP047669.1|WP_045374148.1|614006_615308_-|MFS-transporter
MSQGLNNDMAVSKTRRVVKNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMVCATLWAVACIAHAGAGSWLHLAILRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGVLALLWVVLWWAFYQSPEKHPNLSQSELEYIKQDNEAPPVKLPFFTALKTVSKNKRFYGIAIPAFMAEPAWAVLSFWVPLYLAKEHGMDLKQIAMFAWLPFLAADLGSVVSGYLTRLYVRWFGCTRVNSVIASSVTGAFLMISLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>NZ_CP047669.1|WP_015367564.1|615604_616678_+|LacI-family-transcriptional-regulator
MDKKLRVAEIAARTGLSASTVSRVLAGKANTSEKARQAVLACAHELGVMQGLAAGRLLLNNLLIFAPQRAFDERSDIFYYRVIQSINNALAPHEVRLRYCALEENDSDANLFLARMNETDTQAAVLLGIDDRHIHALAADLGKPCVLINCRDEGMRLPSIAPDHRLIGQCAARYLFDMGHQAVMNVMCLRRYTMELRLVGIKEAWRARNLRFTGSRDLISVANFSARETEEQVGAWLDALQGRPMPTAFLVGGDFMAAGTVSALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGALVVRDSVRRIRPGKSHTAVEQQGLYDD
>NZ_CP047669.1|WP_160183956.1|616674_617940_-|DUF1479-domain-containing-protein
MAALPTHETLPADHKAAIRQMKQALRAQIGDVQAVFDKLSARISERLDEINALKAAGQEVWPTIPFSDIAQGKVSDAQREAIKRRGCAVIKGHYPREQALAWDNAMLEYLDLNHFDDVYKGPGDSFFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEQDGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGKVLPISEQWHPLLIKALSSIPALNAGDSAWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPREDYECDWQARFTVADLNDHGKRALGMKI
>NZ_CP047669.1|WP_045411194.1|618079_618895_-|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHSIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND
>NZ_CP047669.1|WP_126026381.1|619045_621478_-|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEANKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRDELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>NZ_CP047669.1|WP_015704834.1|621481_622381_-|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRNLDGLIIHRQNVNDSHIAALRHCCPTTALTVCGEEKSVTEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>NZ_CP047669.1|WP_015704835.1|622536_623292_-|molybdopterin-synthase-adenylyltransferase-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRLVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLISGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPARGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>NZ_CP047669.1|WP_015704836.1|623291_624527_-|molybdopterin-molybdotransferase-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADAEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>NZ_CP047669.1|WP_015704837.1|624706_625648_+|beta-aspartyl-peptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGAVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNSEGMYRAWCYAGDTPTIGIYRE

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Crispr_ID: NZ_CP047669_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047669_2

3265301-3265415

Orphan

Consensus_repeat	Method
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047669_2

>merge|NZ_CP047669|2|3265301-3265415|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGCCATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATCGTTGGGTAGCCCGGATAAGGCGTAGCCGC

>NZ_CP047669|2|2|3265301-3265415|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATC
GTTGGGTAGCCCGGATAAGGCGTAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047669.1\|WP_015703432.1\|3274941_3275520_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP047669.1\|WP_008806429.1\|3258159_3258819_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NZ_CP047669.1\|WP_015703422.1\|3258983_3259295_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NZ_CP047669.1\|WP_015703421.1\|3257077_3258061_+\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NZ_CP047669.1\|WP_015369786.1\|3261751_3262111_+\|copper-resistance-protein	unknown	unknown	unknown
NZ_CP047669.1\|WP_015703429.1\|3271211_3272414_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NZ_CP047669.1\|WP_032709111.1\|3264772_3265276_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NZ_CP047669.1\|WP_160184243.1\|3265471_3266215_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NZ_CP047669.1\|WP_002916480.1\|3269694_3270789_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP047669.1\|WP_015703430.1\|3272424_3273603_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP047669.1\|WP_015703423.1\|3259345_3260080_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP047669.1\|WP_015703431.1\|3273599_3274916_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP047669.1\|WP_015703424.1\|3262160_3264170_+\|protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|226685
NZ_CP047669.1\|WP_015703428.1\|3269280_3269670_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047669.1\|WP_015703433.1\|3276340_3276937_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NZ_CP047669.1\|WP_015369781.1\|3266276_3269150_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP047669.1\|WP_015703425.1\|3264171_3264783_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP047669.1\|WP_015369787.1\|3260193_3261627_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|184975
NZ_CP047669.1\|WP_015369791.1\|3256587_3256854_-\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803
NZ_CP047669.1\|WP_004205298.1\|3275686_3276016_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874

Protein	Function_ID	Function_description	E-value
NZ_CP047669.1\|WP_015703432.1\|3274941_3275520_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.57873e-121
NZ_CP047669.1\|WP_008806429.1\|3258159_3258819_-\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NZ_CP047669.1\|WP_015703422.1\|3258983_3259295_-\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	1.76534e-62
NZ_CP047669.1\|WP_015703421.1\|3257077_3258061_+\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NZ_CP047669.1\|WP_015703428.1\|3269280_3269670_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.27348e-72
NZ_CP047669.1\|WP_015703429.1\|3271211_3272414_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NZ_CP047669.1\|WP_032709111.1\|3264772_3265276_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	8.32658e-48
NZ_CP047669.1\|WP_160184243.1\|3265471_3266215_-\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	2.61178e-168
NZ_CP047669.1\|WP_002916480.1\|3269694_3270789_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP047669.1\|WP_015703430.1\|3272424_3273603_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NZ_CP047669.1\|WP_015703423.1\|3259345_3260080_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.59305e-58
NZ_CP047669.1\|WP_015703431.1\|3273599_3274916_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP047669.1\|WP_015703424.1\|3262160_3264170_+\|protein-disulfide-reductase	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.1747e-101
NZ_CP047669.1\|WP_004205298.1\|3275686_3276016_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NZ_CP047669.1\|WP_015703433.1\|3276340_3276937_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	1.42023e-120
NZ_CP047669.1\|WP_015369781.1\|3266276_3269150_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP047669.1\|WP_015703425.1\|3264171_3264783_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.48131e-54
NZ_CP047669.1\|WP_015369787.1\|3260193_3261627_+\|6-phospho-beta-glucosidase	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NZ_CP047669.1\|WP_015369791.1\|3256587_3256854_-\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47

>NZ_CP047669.1|WP_032709111.1|3264772_3265276_+|protein-disulfide-oxidoreductase
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGDNAALEKWLTRKKMTLPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSSWGMRLRLWLASW
>NZ_CP047669.1|WP_015703425.1|3264171_3264783_+|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPKLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEELEGLVKEQLAKARGQ
>NZ_CP047669.1|WP_015703424.1|3262160_3264170_+|protein-disulfide-reductase
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGERFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSRGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADSGQAQESHIAIAAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSSASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLKIHIGRTPVLTLLVILAIVLLLATAWRYRWRTALRAGALAIVVAGVVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKTNKYNVLLRDDVQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPALLDREQLLATLSAAKGK
>NZ_CP047669.1|WP_015369786.1|3261751_3262111_+|copper-resistance-protein
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>NZ_CP047669.1|WP_015369787.1|3260193_3261627_+|6-phospho-beta-glucosidase
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAQRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NZ_CP047669.1|WP_015703423.1|3259345_3260080_+|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIGLK
>NZ_CP047669.1|WP_015703422.1|3258983_3259295_-|ASCH-domain-containing-protein
MQANDITFFQRFQDDILAGRKTITIRDAAESHFKAGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>NZ_CP047669.1|WP_008806429.1|3258159_3258819_-|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NZ_CP047669.1|WP_015703421.1|3257077_3258061_+|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSFSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>NZ_CP047669.1|WP_015369791.1|3256587_3256854_-|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI
>NZ_CP047669.1|WP_160184243.1|3265471_3266215_-|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAVDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIINVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>NZ_CP047669.1|WP_015369781.1|3266276_3269150_-|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NZ_CP047669.1|WP_015703428.1|3269280_3269670_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYADGWIFKIKASDEAQVAALLDATAYEALLEDE
>NZ_CP047669.1|WP_002916480.1|3269694_3270789_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>NZ_CP047669.1|WP_015703429.1|3271211_3272414_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NZ_CP047669.1|WP_015703430.1|3272424_3273603_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTAIRSVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAEMLADAHALGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>NZ_CP047669.1|WP_015703431.1|3273599_3274916_-|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFSKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMINGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVITEDGNENLTASVVKKADEIEALMAAARQS
>NZ_CP047669.1|WP_015703432.1|3274941_3275520_-|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>NZ_CP047669.1|WP_004205298.1|3275686_3276016_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NZ_CP047669.1|WP_015703433.1|3276340_3276937_+|5-formyltetrahydrofolate-cyclo-ligase
MTIQPDIPLSRQQIRQQIRERRRALSAEQQQRFALQAAERMMAYPPVVLAHTVALFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIFNRLKIYEPRLDVRDVLPLAELDVLITPLVAFDASGQRLGMGGGFYDRTLQNWRQYRLQPVGYAHDCQQVGTLPSEQWDIPLPAVITPGKTWRW

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Crispr_ID: NZ_CP047669_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047669_3

4021691-4021772

Orphan

Consensus_repeat	Method
CCGGGTGGCGGCTAGCGCCTTATCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047669_3

>merge|NZ_CP047669|3|4021691-4021772|CRISPRCasFinder
CCGGGTGGCGGCTAGCGCCTTATCCGGCCTACGGTCTGATAGCTCGAGCAAGCCCCCGGGTGGCGGCTAGCGCCTTACCCGG

>NZ_CP047669|3|3|4021691-4021772|CRISPRCasFinder
CCGGGTGGCGGCTAGCGCCTTATCCGG	CCTACGGTCTGATAGCTCGAGCAAGCCC
CCGGGTGGCGGCTAGCGCCTTACCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047669.1\|WP_015703846.1\|4020513_4021551_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|226452
NZ_CP047669.1\|WP_015703822.1\|4012527_4013907_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|133432
NZ_CP047669.1\|WP_015703820.1\|4009052_4010762_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP047669.1\|WP_015369100.1\|4030971_4031874_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP047669.1\|WP_015703823.1\|4013991_4014714_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP047669.1\|WP_015703845.1\|4020002_4020290_+\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|237442
NZ_CP047669.1\|WP_032709437.1\|4023536_4024544_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP047669.1\|WP_015703843.1\|4019089_4019656_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047669.1\|WP_015703821.1\|4010954_4012514_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273925
NZ_CP047669.1\|WP_032709446.1\|4027972_4028515_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP047669.1\|WP_032709443.1\|4025004_4026054_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP047669.1\|WP_045390549.1\|4024544_4024847_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP047669.1\|WP_015369115.1\|4017192_4018587_-\|glycoside-pentoside-hexuronide-family-transporter	unknown	unknown	gnl\|CDD\|183145
NZ_CP047669.1\|WP_032710035.1\|4026050_4027004_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NZ_CP047669.1\|WP_160184285.1\|4014861_4017180_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NZ_CP047669.1\|WP_015703844.1\|4019671_4019866_-\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|310261
NZ_CP047669.1\|WP_032709445.1\|4027025_4027805_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP047669.1\|WP_015703847.1\|4021835_4023032_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369347
NZ_CP047669.1\|WP_026612192.1\|4028515_4029325_-\|lipoprotein-NlpA	unknown	unknown	gnl\|CDD\|182119
NZ_CP047669.1\|WP_020077655.1\|4029513_4030947_-\|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|181971

Protein	Function_ID	Function_description	E-value
NZ_CP047669.1\|WP_015369100.1\|4030971_4031874_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.52434e-176
NZ_CP047669.1\|WP_015703822.1\|4012527_4013907_+\|glycoside-hydrolase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	2.94058e-141
NZ_CP047669.1\|WP_015703820.1\|4009052_4010762_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	3.15618e-24
NZ_CP047669.1\|WP_015703823.1\|4013991_4014714_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.22606e-20
NZ_CP047669.1\|WP_015703845.1\|4020002_4020290_+\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|237442	PRK13605, PRK13605, endoribonuclease SymE; Provisional.	3.63473e-18
NZ_CP047669.1\|WP_032709437.1\|4023536_4024544_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP047669.1\|WP_015703846.1\|4020513_4021551_+\|DNA-binding-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	0
NZ_CP047669.1\|WP_015703821.1\|4010954_4012514_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.08334e-104
NZ_CP047669.1\|WP_032709446.1\|4027972_4028515_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.48335e-36
NZ_CP047669.1\|WP_032709443.1\|4025004_4026054_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP047669.1\|WP_045390549.1\|4024544_4024847_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	3.13159e-25
NZ_CP047669.1\|WP_015369115.1\|4017192_4018587_-\|glycoside-pentoside-hexuronide-family-transporter	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0
NZ_CP047669.1\|WP_032710035.1\|4026050_4027004_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	3.06593e-106
NZ_CP047669.1\|WP_160184285.1\|4014861_4017180_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_CP047669.1\|WP_015703844.1\|4019671_4019866_-\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.00465629
NZ_CP047669.1\|WP_032709445.1\|4027025_4027805_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	3.63398e-19
NZ_CP047669.1\|WP_015703847.1\|4021835_4023032_-\|hypothetical-protein	gnl\|CDD\|369347	pfam07396, Porin_O_P, Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.	0.00513664
NZ_CP047669.1\|WP_026612192.1\|4028515_4029325_-\|lipoprotein-NlpA	gnl\|CDD\|182119	PRK09861, PRK09861, lipoprotein NlpA.	0
NZ_CP047669.1\|WP_020077655.1\|4029513_4030947_-\|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC	gnl\|CDD\|181971	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed.	0

>NZ_CP047669.1|WP_015703846.1|4020513_4021551_+|DNA-binding-protein
MAKENITSSPAGEFIMFASEDGEVRVECRFEQETLWLPQATIASLYQVTPQAVTQHIKAIYEEGELEQNATCKSYLQVQQEGSRQVSRNRLHYSLPVILAVGYRVRSSRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTRHTAAELIHQRADASQPHMGLSSYRGEEVNKGDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDWQDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAGLLQWKTEPKK
>NZ_CP047669.1|WP_015703845.1|4020002_4020290_+|type-I-addiction-module-toxin,-SymE-family
MADLHSTPDITVSGTERQLLVGYRPNGRDTSTPSLTLSGKWLREAGFDTGKAVTVKVMDGCIVLLPLSDKEEKLTAELRHIQQSLKSVNGTLQHT
>NZ_CP047669.1|WP_015703844.1|4019671_4019866_-|toxin-antitoxin-system-HicB-family-antitoxin
MSTAKRDTNQSKCGKAPTFQIRITPELKAQFEAAAADAGMSLGNWLKTLGRKELERLGIETADK
>NZ_CP047669.1|WP_015703843.1|4019089_4019656_+|hypothetical-protein
MSLMLSITMVIVTLISPVVAVQVQKFIKRYTDRKTLKIDIFKQLMATRSQNARLSNEHVRALNMIDIAFYGRVRKGQAKRSKAESQVISAWKLYFSHLNTTYPNNDNASGLIWNQNSNNLFVDLLSAIAKDIGYDFERVQLQTAIYSPIAHGEIENDQLKIRKGLASIFSDDGAIKMEIVGIPSRTES
>NZ_CP047669.1|WP_015369115.1|4017192_4018587_-|glycoside-pentoside-hexuronide-family-transporter
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLTLLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGMLSTVLMMPLVNFIGGEDKALGFQGGIAVLSVVAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRIVGVLTILNILAVCVRGGAMMYYTTWIMGSAALFTVFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVLSVAMFFVPMDAEITMFVFIFIIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATLTIIIALFTLVPAVCYLLSAVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIEKEWQN
>NZ_CP047669.1|WP_160184285.1|4014861_4017180_-|alpha-xylosidase
MKISDGNWLIQPGLNLIQPVQVYEVEQQGNEMVVYAAPRDVRERAWQLDTPLFTLRFFSPQEGIIGVRMEHFHGALDNGPHYPLNVQKDVHVEIENTAEFAELKSGSLSVRVTKGEFWALDFLRDGVRITGSQLKNNGYVQDSKTQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNEDGGTSTEQSYKNIPFYLTNRGYGVLVNHPQRVSFEVGSEKVSKVQFSVEGEYLEYFVIDGPTPKAVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERHLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIKRLKAKGLKVCVWINPYIGQRSPVFKELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPEACQWYASKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAFIYNELVWKVLKETVGEQEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGMSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDEESCDVVRHFTHLKCRMMPYLYRQAALANEFGTPMLRAMMLEFPDDPACDYLDRQYMLGDSVLVAPVFSEAGEVQFYLPEGRWTHLWHNDELPGSRWHKQRHDALSLPVYVRDNTLLALGNNDQKPDYAWHEGTAFQLFQLGDGNETVCQVPAADGSAIFTLKAKRQGNTITVSGEGEARGWTLCLRNIPQIAGVEGGTQAGSELGVVVSAQGNALTISL
>NZ_CP047669.1|WP_015703823.1|4013991_4014714_-|MurR/RpiR-family-transcriptional-regulator
MDLENIFRDVKLSKTEMTVLRFIQNDPQLCIREGIRTVAERCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVTNDIDYMSIQPAEALTPLLAGLEQQRILIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAANTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSVPSNR
>NZ_CP047669.1|WP_015703822.1|4012527_4013907_+|glycoside-hydrolase
MKLTVLGGGGVRSAFLAKSLAYNAHRIGLTEVVFQDSSADNLSLFGEIARYVFNTIRPDIHFTTTSDPAAALQGTHYVITTLRVGGDESRIRDERIALEHNTLGQETTGAGGFAMAMRSIPAILRYCRLIEEHADKDAILFNFTNPSGLVTEAIIKSGFKRRVYGICDAPSELIRELPEILGCDPHDLSVECYGLNHFSWFTHFTVRGEEVTAQLVANPDLYRKTAMQYFSPELVKLCDNQLLNEYLYYYYYREVALRAIQQAPETRGEQIARINHDMRQELSGVDVKADPQAAFTIWMKHYLRRENSYMQNESQQEKFHTREPLTLRQFIEEPDTGGYAGVALDILEAVNSTTTKRIVVSIQNNGTLDFLRPDDVIEISCDLSKEGLKPVTPVNVPTAQKNMIASVKEYERLAVAAILQQDKSLALQALMAHPLVGSYSLAKKLVEAYLDDAQFAGWR
>NZ_CP047669.1|WP_015703821.1|4010954_4012514_+|PTS-transporter-subunit-EIIC
MSVIRQRILENMQKFSRAMIGAVLFLPVIGLILALSSVLTNPTLIAETSFLHQLGQLLGDTFWPLFGNLGLLFCVGISYGLAKDKKTEVALVSVMCFIMFLGANHSWLEHTHAVAEKINGEYYGTGQTQLLGFVVVDMGVFLGIILGCTIAWVHNKVSNIELPGALSMYGGAKLTLVAMTPVIICYAIAFTWIWPFMTHGISALTGFMKNAGVAGVFVYGFFEKFLIPTGLHHFVWSPFQLTQIGGTLNVDGQVVSGTQAIFLAYMRHPDLTPVMNDALRFSQQGMTTIFGLAGASLAFYHTAKPEKKAMAKAILLPAIITSMLTGITEPIEFTFLFVSPLLWVIHATLTAASQAICDIFTVRPWGASGLIEFLIYNLPLPVSLTRWPGYVLIGIGQFIVYYAIFRTLVVKLNLKTPGREDDDNVKLYSKADYRKKVSGPQSMTDEIINGLGGKANIISVDNCFTRLRVVVHNMTLVDDEILKSTGANGVVRNRNEVQVIYGVKVGQVRSRVDSWLAEN
>NZ_CP047669.1|WP_015703820.1|4009052_4010762_+|AsmA-family-protein
MKFLGKLILWLLIALLVVIVAAYFALQTRWGARQASSWLSESTGWKIAFDKMAHDFSSPLHLQLQNVTFGRDGKPPTLVARTVDIGFSTRQFSDPLHADEIVLSNGTLNLSPASASMPFAADRLQLRDMAFNSPDSEWNLSAQRVTGGVMPWQPEAGDVLGRKAQIQMSAGSMNINGVEASNVLIQGAMDNGEVTLNTLGADIARGTLTGNAKRRADGSWLVDNLRLNEIRLQSAKPLNEFLAPLTSVPSLQIGRLDVTDARLQGPGWAVTDLDLNLRNLTLSHNGWQSDDGTLSMNASEFIYGSLNFLDPIVNAEFSPQGIALRQFSSRWEGGMVRTSGNWLRAGNALVLDDAVFAGLEYTLPSNWKQLWMEPMPGWLQSLTLKKFSASRNLIIDIDPAFPWQITALDGYGGELQLVKDGQWGVWNGSATLNAAAATFNRIDVRRPSLKLNANASTVNISELSAFTERGILQATAAVSQLPQRQVNLSLNGRGVPLNILQAWGWPALPISGDGNFQLTANGSVQANAPLKPSVNGQLSATNMDKQQAAQVMRNGEVSNAPAASVPVTP
>NZ_CP047669.1|WP_015703847.1|4021835_4023032_-|hypothetical-protein
MRKILLSLLLAAATSGLALADDGKPFPHIGWRSADNLAGLDFGGALRANYRYEDWKGSNYRNPPHLRFDTFRIDSSGFYDNYFFDAGFWFQDHRKYAIDRAYVGYRFDNNNNIQLGIPGKPFGLEPYPQFGWSYGIPFYLGFGVSAGSGVNYQYHDNNWSLDVAYFPWMEPENLRYAPDVGDYDRLKNTIYPTQHQQHNEKRDQVNVRIARDFHGGGWNNELGGSLALARLHNRETDDDGTFWAAGVHGMLHNGPWQLTSQLIRYQYDPKNPAGVSDDTILMGGNGLTPAYLIPAKATTASLNVARDVDVKWGGVSKLRFYNDYSVLWKDKSGWSDSQMNTLGVQVFALPVMFWVDLSWAKNVNPWGGALNATGWTSTQSEGSGKWYFRTNVNIGYYF
>NZ_CP047669.1|WP_032709437.1|4023536_4024544_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKAIAITQAAADGNNIPFLRDIDLPDPQAQGHDLLVEVKAISVNPVDTKVRAGFNADTPRVLGWDAVGVVKAVGDAVTLFTPGDEVWYAGALGRPGSNSELQLVDERIVALKPRSLENAAAAALPLTAITAWELLFHRLGVQEGGNAGDTLLIVGAAGGVGSILTQLASKLTNMTVIGTASRPESQKWVREAGAHHVIDHSKPLGEELAKIGIHAVTHVASLTNTDQHFNELIAALAPQGKLALIDDPESLDVVPLKAKSISLHWEFMFTRSMFETHDMIAQHQLLTRVAALIDDNTLRTTLGEHYGTINAANLQKAHAKLETGRSVGKIVLEGF
>NZ_CP047669.1|WP_045390549.1|4024544_4024847_+|antibiotic-biosynthesis-monooxygenase
MRDDTIALIAVLKAKAGQTEALRDALQALLLPTREEQGNLDYALFQLRDAPDTFYMRESWRDQQALDEHIAQPYFQAFIGQMESLLAEPLRLDYLTPIAP
>NZ_CP047669.1|WP_032709443.1|4025004_4026054_+|NAD(P)-dependent-alcohol-dehydrogenase
MQINAIGTYSASQPLESMSITRREPGPQDVQIAIAYCGVCHSDLHQARAEWAGTLYPCVPGHEIVGRVTAVGDAVSGYAVGDLVGVGCMVDSCKQCEECAEGLENYCDHMVLTYNGPTQDAPGHTLGGYSQQIVVNERYVLRINHPEAQLAAVAPLLCAGITTYSPLRHWHAGPGKKVGIVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRDAARALGADEVVVSRNEDEMAAHVKSFDFILNTVAAPHNLDAFTTLLKRDGTMTLVGAPATPHPSPEVFNLIFRRRSIAGSMIGGIPETQEMLDFCAEHGIVADIELIRADQINEAWERMVKGDVKYRFVIDSSTLAG
>NZ_CP047669.1|WP_032710035.1|4026050_4027004_-|helix-turn-helix-domain-containing-protein
MTLTDVAIVAVEGFSPFHYSVPCMLFGDTVSETKRFNLQICAEQPGLLSARDGFALYASGDFTAMEQADIVVVPYWGEVNQRPPQALIASLIRARDNGAEIVGLCLGAFVLGYAGLLDGKRAATHWEFEQDFQRLFPQVQLDINALYVDDQKVITSAGTAAALDCCLYIIRQRFGSLAANQIARRMIVPPHREGGQAQFIAQPVPRNTRDARINCLLDYLQQHIAEPHNLDSLAEVVAMSRRTLTRHFARATGMSIADWLTAERLRRSQSLLEAGDLPVEQVAEAVGYLSAVTWRQQFKARFGVSPTEWRRTFRRGV
>NZ_CP047669.1|WP_032709445.1|4027025_4027805_-|MBL-fold-metallo-hydrolase
MNITHIRNATQIIEYAGKKFLIDPMLADKGAWPGFPGTARSELRNPLVALPFPREKIIDVDAVIVTHTHDDHWDEAAIAAIPKILPVFVQHEADAALLRSQGFQDIRLLSADSEFAGVGLQKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLWLVGDTIWRDEIEADMLKLRPDVVVLNAGYAHVIGFGPIIMGKEDLLKAHFALPEAKIMAIHLEAVNHCLVSREEMRQYVADNQIAGVVSIPQDGETVVY
>NZ_CP047669.1|WP_032709446.1|4027972_4028515_+|NUDIX-hydrolase
MKKKLTAADMHNPQVIAETPWFSMRKVGIDVAPGERRDFYSIHYPRPAVGIVALQDDKVLLIRHYRYLIDKVVWAIPSGGVDEGEEPAVAALRELREETGWQAQHAEEIIRYNPSYGSSDQLFITWLATDLSWVGMDADQDEVMETGWFTFEEINQLIARGEMPDGLSLVPLLHLMAQHR
>NZ_CP047669.1|WP_026612192.1|4028515_4029325_-|lipoprotein-NlpA
MKLRLRTAAAVMLAGLLLAGCDQKNDNAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNAGELDANVFQHRPYLEQDNKAHGYHLVAIGNTFVFPMAGYSRKIKSVADIKDGATIAIPNDPTNLGRALLLLQKEQLITLKAGTGLLPTAVDITSNPRNLKIMELEGAQLPRVLDDPKVDVAIISTTYLQQTGLSPVRDGIFIEDKNSPYVNIIVAREDNKDAESVKEFMQSYQSPEVAKAAETIFNGGAVPGW
>NZ_CP047669.1|WP_020077655.1|4029513_4030947_-|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC
MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNGLMEAAPQAAASLADVAAEKKQALKSKQTSGVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQIFVLENAHPNASLVALIGYMKVFSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVLGYNPEATSGFYAGISTFFGHGIDPRGNIIGVLIASILGAWVERQVRRIMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNPFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFITACIGGACGGFFVGLIAWLGLPVGLNTVFGPSGLVALPLMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFASKNVDLS
>NZ_CP047669.1|WP_015369100.1|4030971_4031874_-|N-acetylmuramic-acid-6-phosphate-etherase
MSIDLSKLLTERRNANSANIDTLSTVDMLTVINQEDQQVAQAITPYLPQIAEVVDKVAAALRAGGRLIYIGAGTSGRLGILDASECPPTFGTRPEQVVGIIAGGHKAILSAVENVEDNKAQGAMDLQNLNFSNRDVLVGLAASGRTPYVIGAMEYAHSQNAFVAIVSCNPHGEMAQLADVAITPVVGPEVVTGSTRLKAGTAQKLVLNMISTGAMIRIGKVYSNLMVDVEATNAKLIERQVSIVMEATDCDRATAQNALDACGRHCKTAIVMVLADLSAAEAQSLLAKNNGYIRKALSNT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047669_1	1.1\|611045\|26\|NZ_CP047669\|CRISPRCasFinder	611045-611070	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324018-324043	0	1.0
NZ_CP047669_3	3.1\|4021718\|28\|NZ_CP047669\|CRISPRCasFinder	4021718-4021745	28	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	133968-133995	0	1.0
NZ_CP047669_1	1.1\|611045\|26\|NZ_CP047669\|CRISPRCasFinder	611045-611070	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447528-447553	2	0.923
NZ_CP047669_1	1.1\|611045\|26\|NZ_CP047669\|CRISPRCasFinder	611045-611070	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323588-323613	5	0.808
NZ_CP047669_1	1.1\|611045\|26\|NZ_CP047669\|CRISPRCasFinder	611045-611070	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447689-447714	6	0.769

1. spacer 1.1|611045|26|NZ_CP047669|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 0, identity: 1.0

ggctacccgcggtgccgtttttttgt	CRISPR spacer
ggctacccgcggtgccgtttttttgt	Protospacer
**************************

2. spacer 3.1|4021718|28|NZ_CP047669|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 0, identity: 1.0

cctacggtctgatagctcgagcaagccc	CRISPR spacer
cctacggtctgatagctcgagcaagccc	Protospacer
****************************

3. spacer 1.1|611045|26|NZ_CP047669|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 2, identity: 0.923

ggctacccgcggtgccgtttttttgt	CRISPR spacer
cgctactcgcggtgccgtttttttgt	Protospacer
 *****.*******************

4. spacer 1.1|611045|26|NZ_CP047669|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.808

ggctacccgcggtgccgtttttttgt	CRISPR spacer
atctacccgcggtgccgttttttgtc	Protospacer
. *********************  .

5. spacer 1.1|611045|26|NZ_CP047669|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.769

ggctacccgcggtgccgtttttttgt	CRISPR spacer
cactactcgcggtgccgttttttgtc	Protospacer
 .****.****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

65017 : 72640

Erwinia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052766688.1\|65017_65350_-	DUF1493 family protein	A0A218M4K1	Erwinia_phage	2.4e-09	40.0
WP_047058586.1\|65621_66248_+	DNA-binding protein	NA	NA	NA	NA
WP_015704508.1\|66559_66886_-	DUF1493 family protein	NA	NA	NA	NA
WP_015704509.1\|66879_67344_-	membrane protein	A0A218M4J4	Erwinia_phage	4.9e-08	33.3
WP_015368076.1\|68300_69554_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-91	45.6
WP_015368077.1\|69564_70668_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.7e-63	40.7
WP_015368078.1\|70957_72010_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	5.1e-114	59.0
WP_026612390.1\|72073_72640_-	hypothetical protein	S5MM68	Bacillus_phage	2.2e-10	38.9

DBSCAN-SWA_2

2139074 : 2183133

Enterobacteria_phage(22.22%)

lysis,integrase,terminase,tail

attL 2128136:2128160|attR 2183164:2183188

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2128136:2128160	attL	NA	NA	NA	NA
WP_160184385.1\|2139074_2141621_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	70.7
WP_160184106.1\|2142106_2142487_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.4e-58	80.2
WP_045419358.1\|2142496_2142979_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	7.9e-62	73.8
WP_032712199.1\|2142965_2143439_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.1e-58	67.1
WP_160184386.1\|2143438_2146330_-\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	2.7e-96	38.1
WP_032712205.1\|2146953_2147286_-	lipoprotein	M1PRT9	Cellulophaga_phage	2.9e-31	66.7
WP_123273243.1\|2147352_2147550_-	hypothetical protein	NA	NA	NA	NA
WP_100279723.1\|2147687_2148170_-	hypothetical protein	NA	NA	NA	NA
WP_160184107.1\|2148224_2149397_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	6.5e-25	27.9
WP_160184108.1\|2149420_2149813_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_160184109.1\|2149809_2150361_-	hypothetical protein	G8C7Q1	Escherichia_phage	3.9e-28	39.8
WP_160184110.1\|2150362_2150746_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	9.2e-21	44.4
WP_160184111.1\|2150747_2151143_-	protein singed	A0A0S2SYB7	Pseudomonas_phage	5.6e-13	43.3
WP_151391665.1\|2151183_2151456_-	hypothetical protein	NA	NA	NA	NA
WP_042896375.1\|2151464_2152418_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	9.4e-131	73.7
WP_160184112.1\|2152428_2153217_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	7.6e-70	64.8
WP_142689032.1\|2153301_2154414_-	hypothetical protein	I6PD76	Cronobacter_phage	8.1e-110	54.4
WP_160184113.1\|2154397_2155798_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.6e-126	53.0
WP_032712234.1\|2155797_2157105_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	6.1e-149	58.9
WP_058674190.1\|2157082_2158075_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.4e-28	34.5
WP_126003066.1\|2158539_2158722_-	hypothetical protein	NA	NA	NA	NA
WP_047041390.1\|2159206_2159491_+	hypothetical protein	NA	NA	NA	NA
WP_160184114.1\|2159866_2160394_-	hypothetical protein	NA	NA	NA	NA
WP_160184115.1\|2160884_2161262_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.7e-14	38.6
WP_160184116.1\|2161249_2161753_-	lysozyme	M9P0E5	Enterobacteria_phage	1.8e-85	91.5
WP_045412035.1\|2161730_2161955_-\|lysis	lysis protein	M9NZI9	Enterobacteria_phage	6.8e-32	90.5
WP_160184387.1\|2162314_2163004_-	antiterminator	I6PDF8	Cronobacter_phage	3.7e-60	55.8
WP_004884232.1\|2163003_2163144_-	YlcG family protein	NA	NA	NA	NA
WP_160184117.1\|2163140_2163785_-	hypothetical protein	S4TSR3	Salmonella_phage	3.9e-72	66.4
WP_160184118.1\|2163777_2163948_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.0e-15	79.6
WP_160184119.1\|2163947_2164403_-	hypothetical protein	I6PD71	Cronobacter_phage	7.8e-59	66.7
WP_160184120.1\|2164579_2164813_-	hypothetical protein	NA	NA	NA	NA
WP_160184121.1\|2164821_2165076_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	6.7e-28	75.3
WP_160184122.1\|2165089_2165371_-	hypothetical protein	NA	NA	NA	NA
WP_160184388.1\|2165496_2166312_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.3e-42	41.2
WP_154059060.1\|2166494_2166875_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	6.7e-64	94.4
WP_160184123.1\|2166874_2167237_-	hypothetical protein	NA	NA	NA	NA
WP_160184389.1\|2168565_2169123_-	hypothetical protein	NA	NA	NA	NA
WP_045412061.1\|2169239_2169542_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_047075678.1\|2169541_2170132_-	hypothetical protein	I3PUZ9	Vibrio_phage	5.4e-36	40.0
WP_160184124.1\|2170131_2171061_-	replication protein	K7PGT1	Enterobacteria_phage	5.5e-51	77.3
WP_160184125.1\|2171146_2171689_-	regulator	M9NZI6	Enterobacteria_phage	1.7e-81	86.1
WP_015705720.1\|2171783_2172014_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	4.5e-23	68.9
WP_160184126.1\|2172118_2172814_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.6e-82	66.5
WP_160184127.1\|2172862_2172982_+	hypothetical protein	NA	NA	NA	NA
WP_160184128.1\|2173239_2173587_+	hypothetical protein	NA	NA	NA	NA
WP_160184129.1\|2174349_2174544_-	hypothetical protein	NA	NA	NA	NA
WP_063407113.1\|2174542_2174749_+	hypothetical protein	K7P6H3	Enterobacteria_phage	1.6e-24	75.0
WP_160184130.1\|2174819_2175791_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	1.1e-38	75.4
WP_160184131.1\|2175798_2176083_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.2e-43	86.2
WP_160184132.1\|2176101_2176947_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.4e-69	60.3
WP_160184133.1\|2176943_2177624_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	2.7e-124	92.5
WP_160184134.1\|2177620_2178049_+	regulator	M9NYX4	Enterobacteria_phage	1.9e-62	80.3
WP_160184135.1\|2178045_2178702_+	DNA methyltransferase	G8C7S6	Escherichia_phage	3.0e-112	85.6
WP_160184136.1\|2178698_2179877_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	2.0e-151	68.9
WP_160184137.1\|2179873_2180092_+	hypothetical protein	NA	NA	NA	NA
WP_160184138.1\|2180088_2180625_+	hypothetical protein	J9Q748	Salmonella_phage	7.2e-72	74.3
WP_160184139.1\|2180621_2180813_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.7e-13	62.7
WP_160184140.1\|2180904_2181123_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	9.2e-18	63.9
WP_160184141.1\|2181125_2181467_+	hypothetical protein	I3PV00	Vibrio_phage	3.3e-22	52.9
WP_015705920.1\|2181572_2181821_+	excisionase family protein	S4TND0	Salmonella_phage	1.8e-17	53.1
WP_160184142.1\|2181852_2183133_+\|integrase	site-specific integrase	A0A0P0ZGT7	Escherichia_phage	3.8e-143	58.8
2183164:2183188	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2368274 : 2377595

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015706036.1\|2368274_2369144_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.5e-111	67.0
WP_015706037.1\|2369158_2370223_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	54.9
WP_015706038.1\|2371012_2371120_+	hypothetical protein	NA	NA	NA	NA
WP_015706039.1\|2371116_2372121_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	3.4e-30	28.6
WP_141108162.1\|2372458_2372578_+	small membrane protein	NA	NA	NA	NA
WP_015706040.1\|2372817_2373984_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	2.4e-112	53.7
WP_015706041.1\|2374158_2374713_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.3e-52	58.8
WP_015706042.1\|2374724_2375615_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.0e-27	33.1
WP_015706043.1\|2375646_2376516_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-110	67.0
WP_015706044.1\|2376530_2377595_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.4e-103	54.9

DBSCAN-SWA_4

4549331 : 4598471

Bacillus_phage(28.57%)

transposase,integrase

attL 4543796:4543811|attR 4583385:4583400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4543796:4543811	attL	NA	NA	NA	NA
WP_006786007.1\|4549331_4550231_+\|integrase	integrase	NA	NA	NA	NA
WP_020899211.1\|4550299_4550917_-	recombinase family protein	NA	NA	NA	NA
WP_087464944.1\|4551321_4552468_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.3e-146	91.9
WP_006785878.1\|4552532_4553165_+	hypothetical protein	NA	NA	NA	NA
WP_006785879.1\|4553331_4553682_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	1.0e-18	52.4
WP_006785880.1\|4553830_4554262_-	silver-binding protein SilE	NA	NA	NA	NA
WP_000555738.1\|4554511_4555987_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.9e-26	29.3
WP_000697968.1\|4555979_4556660_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0
WP_000475503.1\|4556849_4558235_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|4558263_4558617_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_001485328.1\|4558730_4560023_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_000574021.1\|4560033_4563180_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA
WP_002436620.1\|4563266_4563707_+	hypothetical protein	NA	NA	NA	NA
WP_129244003.1\|4563804_4566276_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	2.2e-83	35.1
WP_000843497.1\|4566316_4566514_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|4566547_4567285_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	3.6e-13	41.0
WP_001023257.1\|4567573_4568023_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|4568256_4570074_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_020899208.1\|4570073_4570970_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|4571009_4571390_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_160184311.1\|4571394_4572324_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|4572378_4573059_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_006785898.1\|4573055_4574456_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	3.2e-18	26.6
WP_004388336.1\|4574671_4575106_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_001351729.1\|4578081_4578474_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|4578611_4579496_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|4579527_4580727_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|4580832_4581483_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_001143775.1\|4581547_4584553_-\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.3
4583385:4583400	attR	NA	NA	NA	NA
WP_001217881.1\|4584714_4585272_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_000027057.1\|4585454_4586315_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001043260.1\|4586476_4587292_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001082319.1\|4587352_4588156_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|4588155_4588992_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000844627.1\|4589297_4589540_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|4589571_4590222_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804063.1\|4590327_4591527_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001255015.1\|4591793_4592099_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000214121.1\|4592126_4593341_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	8.0e-18	28.3
WP_001447541.1\|4593557_4594442_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_001120888.1\|4594472_4595966_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|4596176_4596401_-	hypothetical protein	NA	NA	NA	NA
WP_001366550.1\|4596397_4597135_-	recombinase family protein	NA	NA	NA	NA
WP_001044210.1\|4597620_4597761_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|4597766_4598471_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047668

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

154288 : 206627

Salmonella_phage(17.65%)

integrase,transposase

attL 165779:165794|attR 209355:209370

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087522250.1\|154288_155657_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.3e-112	99.5
WP_000783758.1\|155756_155915_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001015182.1\|156333_156537_-	hypothetical protein	NA	NA	NA	NA
WP_000743060.1\|156582_156933_-	hypothetical protein	NA	NA	NA	NA
WP_001031421.1\|156992_157592_-	hypothetical protein	A0A1V0E5L6	Salmonella_phage	1.7e-08	42.6
WP_000778030.1\|157691_158636_-	DUF5417 domain-containing protein	NA	NA	NA	NA
WP_001272970.1\|159737_160922_+	hypothetical protein	NA	NA	NA	NA
WP_000710431.1\|160987_161269_+	hypothetical protein	NA	NA	NA	NA
WP_000893963.1\|161525_161732_+	hypothetical protein	NA	NA	NA	NA
WP_000744346.1\|161852_162149_+	hypothetical protein	NA	NA	NA	NA
WP_000286107.1\|162193_162631_+	hypothetical protein	NA	NA	NA	NA
WP_000800252.1\|162698_163235_+	hypothetical protein	NA	NA	NA	NA
WP_000537761.1\|163399_163768_+	hypothetical protein	NA	NA	NA	NA
WP_000442694.1\|164200_164503_+	hypothetical protein	NA	NA	NA	NA
WP_001032029.1\|164859_165144_+	hypothetical protein	NA	NA	NA	NA
WP_000210769.1\|165209_165563_+	hypothetical protein	NA	NA	NA	NA
165779:165794	attL	NA	NA	NA	NA
WP_000422741.1\|165998_166424_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_072647959.1\|166420_166771_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.8e-40	66.4
WP_000080195.1\|166801_168415_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_072647958.1\|168401_169121_-	NERD domain-containing protein	NA	NA	NA	NA
WP_000952983.1\|169122_170304_-	S49 family peptidase	B8QTU8	Erwinia_phage	3.4e-13	29.2
WP_000718549.1\|170314_170977_-	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_046788496.1\|170963_172073_-	hypothetical protein	NA	NA	NA	NA
WP_046788497.1\|172072_174157_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_001011151.1\|174156_177303_-	helicase	NA	NA	NA	NA
WP_000128631.1\|177312_178050_-	hypothetical protein	NA	NA	NA	NA
WP_000071885.1\|178046_178532_-	hypothetical protein	NA	NA	NA	NA
WP_000004209.1\|179290_180091_+	hypothetical protein	NA	NA	NA	NA
WP_001140953.1\|180092_180605_+	hypothetical protein	NA	NA	NA	NA
WP_000196728.1\|181198_182245_+	thioredoxin family protein	NA	NA	NA	NA
WP_001257292.1\|182234_183650_+	hypothetical protein	NA	NA	NA	NA
WP_072647581.1\|183658_187612_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_001284752.1\|187792_189082_+	HNH endonuclease	A0A1S6KZY3	Salmonella_phage	5.5e-09	32.9
WP_024136329.1\|189189_189756_-	hypothetical protein	NA	NA	NA	NA
WP_000494967.1\|189838_190378_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_000720274.1\|190525_191275_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_000843244.1\|191299_191692_+	hypothetical protein	NA	NA	NA	NA
WP_000025803.1\|191725_192148_+	hypothetical protein	NA	NA	NA	NA
WP_000620990.1\|192207_192819_-	hypothetical protein	NA	NA	NA	NA
WP_000031377.1\|192925_193735_+	DsbA family protein	NA	NA	NA	NA
WP_042634445.1\|193780_195040_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.6e-96	44.3
WP_000111290.1\|195023_195458_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	2.5e-22	48.8
WP_001130842.1\|195651_196269_+	hypothetical protein	NA	NA	NA	NA
WP_000770127.1\|196418_196775_+	hypothetical protein	NA	NA	NA	NA
WP_152919720.1\|197025_197196_+	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|197232_197937_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000434930.1\|198431_199058_+	hypothetical protein	NA	NA	NA	NA
WP_013188475.1\|199562_200438_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_001067855.1\|200675_201380_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_049824851.1\|201389_201860_+	TetR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	5.3e-10	32.7
WP_014839978.1\|201879_202668_+	transcriptional regulator	NA	NA	NA	NA
WP_014839979.1\|202667_203186_+	hypothetical protein	NA	NA	NA	NA
WP_014839980.1\|203190_203607_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_001067855.1\|203992_204697_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845054.1\|204971_205985_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001083725.1\|206129_206627_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
209355:209370	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047669

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047668

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection