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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047665 Escherichia coli strain LD26-1 chromosome, complete genome 3 crisprs cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK 0 12 8 0
NZ_CP047667 Escherichia coli strain LD26-1 plasmid pLD26-1-135kb, complete sequence 0 crisprs DEDDh 0 0 1 0
NZ_CP047666 Escherichia coli strain LD26-1 plasmid pLD26-1-MCR1, complete sequence 0 crisprs csa3 0 0 2 0

Results visualization

1. NZ_CP047665
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047665_1 934589-934720 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047665_2 2065983-2066683 TypeI-E I-E
11 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047665_3 2082200-2083326 TypeI-E I-E
18 spacers
cas3,cas8e,cse2gr11,cas7,cas5

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP019314 Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence 71972-72003 6 0.812
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 66681-66712 7 0.781
NZ_CP047665_3 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082412-2082443 32 NZ_CP026333 Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence 141829-141860 7 0.781
NZ_CP047665_3 3.11|2082839|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082839-2082870 32 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 555773-555804 7 0.781
NZ_CP047665_3 3.8|2082656|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082656-2082687 32 NZ_AP012556 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence 152763-152794 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NC_010180 Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence 223698-223729 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP015592 Bacillus cereus strain AR156 plasmid pAR460, complete sequence 221508-221539 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP031072 Bacillus mycoides strain BPN401 plasmid pl395, complete sequence 147474-147505 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 374123-374154 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP009368 Bacillus cereus strain FM1 plasmid unnamed, complete sequence 74049-74080 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP009691 Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence 130803-130834 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP009336 Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence 195225-195256 8 0.75
NZ_CP047665_3 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082717-2082748 32 NZ_CP053657 Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence 471476-471507 8 0.75
NZ_CP047665_2 2.7|2066379|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066379-2066410 32 AP014927 Ralstonia phage RSF1 DNA, complete genome 171005-171036 9 0.719
NZ_CP047665_2 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066501-2066532 32 NZ_CP033139 Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence 115828-115859 9 0.719
NZ_CP047665_2 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066501-2066532 32 KY579375 Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome 4523-4554 9 0.719
NZ_CP047665_2 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066501-2066532 32 EU030939 Sulfolobus spindle-shaped virus 5, complete genome 8793-8824 9 0.719
NZ_CP047665_2 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066501-2066532 32 JF412294 EBPR podovirus 1, partial sequence 3991-4022 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP020898 Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence 46007-46038 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013555 Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence 125777-125808 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP020950 Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence 134655-134686 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013587 Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence 68724-68755 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 166140-166171 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013598 Rhizobium sp. N741 plasmid pRspN741c, complete sequence 103164-103195 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013578 Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence 125386-125417 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013544 Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence 36015-36046 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013566 Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence 125777-125808 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013502 Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence 103085-103116 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013508 Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence 103164-103195 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013519 Rhizobium sp. N113 plasmid pRspN113b, complete sequence 103163-103194 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013572 Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence 125386-125417 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013492 Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence 103161-103192 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013497 Rhizobium sp. N621 plasmid pRspN621b, complete sequence 103161-103192 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP013592 Rhizobium sp. N871 plasmid pRspN871b, complete sequence 103085-103116 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 CP007643 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence 92301-92332 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NC_010996 Rhizobium etli CIAT 652 plasmid pB, complete sequence 100863-100894 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP034999 Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence 97248-97279 9 0.719
NZ_CP047665_3 3.1|2082229|32|NZ_CP047665|CRISPRCasFinder,CRT 2082229-2082260 32 MK249151 Blackfly microvirus SF02 isolate 049, complete genome 1908-1939 9 0.719
NZ_CP047665_3 3.3|2082351|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082351-2082382 32 NC_017140 Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence 5097-5128 9 0.719
NZ_CP047665_3 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082412-2082443 32 NZ_CP013541 Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence 1036450-1036481 9 0.719
NZ_CP047665_3 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082412-2082443 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 823434-823465 9 0.719
NZ_CP047665_3 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082412-2082443 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 682589-682620 9 0.719
NZ_CP047665_3 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082595-2082626 32 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5210759-5210790 9 0.719
NZ_CP047665_3 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082595-2082626 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 191956-191987 9 0.719
NZ_CP047665_3 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082595-2082626 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1498191-1498222 9 0.719
NZ_CP047665_3 3.8|2082656|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082656-2082687 32 NZ_CP032828 Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence 161129-161160 9 0.719
NZ_CP047665_2 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT 2066562-2066593 32 NZ_CP040452 Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence 1679246-1679277 10 0.688
NZ_CP047665_3 3.1|2082229|32|NZ_CP047665|CRISPRCasFinder,CRT 2082229-2082260 32 NZ_CP038854 Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence 450688-450719 10 0.688
NZ_CP047665_3 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082290-2082321 32 NZ_CP039902 Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence 33041-33072 10 0.688
NZ_CP047665_3 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082290-2082321 32 NZ_CP039893 Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence 217865-217896 10 0.688
NZ_CP047665_3 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082290-2082321 32 NZ_KY000025 Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence 208000-208031 10 0.688
NZ_CP047665_3 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2082290-2082321 32 NZ_KY000029 Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence 208000-208031 10 0.688
NZ_CP047665_3 3.14|2083022|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR 2083022-2083053 32 NZ_AP018282 Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome 109485-109516 11 0.656

1. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gagattgt-cgccctgttgggcgagaacggtgc	Protospacer
 .*.**** ******* *******.******* 

2. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gaggacgt-tgccctggtcggcgaagacggtgg	Protospacer
 .** .** .******** ******.*******

3. spacer 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 7, identity: 0.781

tccgcatcgctcatgccgataatcgggctagg	CRISPR spacer
cccatatcgctcatggcgatgatcgggcgcgg	Protospacer
.**..********** ****.*******  **

4. spacer 3.11|2082839|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

cgccgcggactcacgagcaggccatcacagac-	CRISPR spacer
aggcgcgaactgacgagcaggccatc-cacgcg	Protospacer
 * ****.*** ************** ** .* 

5. spacer 3.8|2082656|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 8, identity: 0.75

aaagtgacgcgatagacgcgctgattgacgct	CRISPR spacer
atcccgccgcgatcgacgcgctcattgacgcc	Protospacer
*   .* ****** ******** ********.

6. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

7. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

8. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

9. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

10. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

11. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

12. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

13. spacer 3.9|2082717|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaggtgctgaagaatatcgga---ttcagaacg	CRISPR spacer
agaaggtgaggaagaatatcggattgtttgga---	Protospacer
 *******  *************   **..**   

14. spacer 2.7|2066379|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to AP014927 (Ralstonia phage RSF1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctccagcgccttttcgacgcaacggtgcgc	CRISPR spacer
cacgccagcgcctgttcgacgaaacgggtctg	Protospacer
  * ********* ******* *****  *  

15. spacer 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaaacgcttcctctacattctctttttc	Protospacer
  ..*   *****.****** ***********

16. spacer 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

17. spacer 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

18. spacer 2.9|2066501|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
gccttcgctgctttctcggccttctctttttc	Protospacer
 *   . *.******** .*************

19. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

20. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

21. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

22. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

23. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
aaggtcaccgccctgatcggcgaaaacggtgc	Protospacer
..* *   *******.* ************* 

24. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

25. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

26. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

27. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

28. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

29. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

30. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

31. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

32. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

33. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

34. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

35. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

36. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

37. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

38. spacer 3.1|2082229|32|NZ_CP047665|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
atttgttccctggcgttttgttgggacatggc	Protospacer
 ***** *************.***  * .*  

39. spacer 3.3|2082351|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.719

cgttcctcgcattatttccctttcttcttcga	CRISPR spacer
ccgcgctcgctttgtttccctttcttctccat	Protospacer
*  . ***** **.**************.*. 

40. spacer 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctagg	CRISPR spacer
tccgtatcgctcatgtcgataatcctaattca	Protospacer
****.**********.********  . *  .

41. spacer 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctagg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   .*. 

42. spacer 3.4|2082412|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

tccgcatcgctcatgccgataatcgggctagg	CRISPR spacer
tacgcatcgcccatgccgatgatcgccgcaac	Protospacer
* ********.*********.****   .*. 

43. spacer 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
tcgaacggctcggcgcccgcataccgttcgac	Protospacer
.***************.* ****** .. .*.

44. spacer 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
acgaacgactcggcgcgctcatacgaacgttt	Protospacer
 ******.******** *******   *.  *

45. spacer 3.7|2082595|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctcggcgctctcatacccccaaat	CRISPR spacer
acgaacgactcggcgcgctcatacgaacgttt	Protospacer
 ******.******** *******   *.  *

46. spacer 3.8|2082656|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaagtgacgcgatagacgcgctgattgacgct	CRISPR spacer
atcgcgacgcgatgaacgcgctgattgagttc	Protospacer
*  *.********..*************  ..

47. spacer 2.10|2066562|32|NZ_CP047665|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
ttccctgccgccctggttggcgaatacggtgg	Protospacer
   ..   ********* ****** *******

48. spacer 3.1|2082229|32|NZ_CP047665|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
accggtgccctggcgctttgcaggctccttcc	Protospacer
 .. ***********.***** *****.. * 

49. spacer 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   .. 

50. spacer 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   .. 

51. spacer 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   .. 

52. spacer 3.2|2082290|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   .. 

53. spacer 3.14|2083022|32|NZ_CP047665|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018282 (Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome) position: , mismatch: 11, identity: 0.656

ggaccaaatacccgtccctcaatccacgccgt	CRISPR spacer
tccttctttacccgtacctcaatccactccgc	Protospacer
   ..   ******* *********** ***.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 85174 : 155370 81 Salmonella_phage(68.0%) portal,tail,lysis,integrase,protease,head,plate,terminase,capsid attL 83448:83462|attR 137104:137118
DBSCAN-SWA_2 607991 : 728233 112 Escherichia_phage(42.59%) tail,lysis,transposase,integrase,tRNA,terminase attL 602375:602391|attR 645853:645869
DBSCAN-SWA_3 1342151 : 1349689 7 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_4 1441283 : 1450725 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_5 2042486 : 2049626 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_6 4089464 : 4151656 51 Emiliania_huxleyi_virus(12.5%) tRNA,transposase,plate,protease NA
DBSCAN-SWA_7 4182489 : 4266340 93 Shigella_phage(49.18%) portal,lysis,tail,integrase,transposase,protease,head,plate,terminase,holin,capsid attL 4186084:4186098|attR 4266202:4266216
DBSCAN-SWA_8 4731149 : 4774311 61 Enterobacteria_phage(54.24%) tail,lysis,portal,integrase,protease,head,terminase,capsid attL 4729519:4729534|attR 4753548:4753563
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP047667
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 28335 : 71864 49 Macacine_betaherpesvirus(23.08%) integrase,transposase,protease attL 48792:48807|attR 82375:82390
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP047666
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 57775 : 99927 45 Escherichia_phage(30.77%) transposase,protease,integrase attL 52724:52737|attR 65235:65248
DBSCAN-SWA_2 103265 : 160778 56 Escherichia_phage(33.33%) transposase,integrase attL 103213:103272|attR 156766:157586
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage