CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP047898	Pseudarthrobacter sp. YJ56 chromosome contig_1, complete sequence	2 crisprs	DinG,DEDDh,WYL,csa3,RT,cas3	0	2	4
NZ_CP047900	Pseudarthrobacter sp. YJ56 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP047899	Pseudarthrobacter sp. YJ56 plasmid unnamed1, complete sequence	1 crisprs	WYL	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047898_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047898_1

950884-950963

Orphan

Consensus_repeat	Method
GTGATTTCCCGCGTGCTGGCTCGTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047898_1

>merge|NZ_CP047898|1|950884-950963|CRISPRCasFinder
GTGATTTCCCGCGTGCTGGCTCGTTCCGTGGTCGGGCACGCTCCGCAGCGCGCGTGATTTCCCGCTTGCTGGCTCGTTCC

>NZ_CP047898|1|1|950884-950963|CRISPRCasFinder
GTGATTTCCCGCGTGCTGGCTCGTTCC	GTGGTCGGGCACGCTCCGCAGCGCGC
GTGATTTCCCGCTTGCTGGCTCGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047898.1\|WP_160670859.1\|945951_946668_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP047898.1\|WP_160670853.1\|944105_945305_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NZ_CP047898.1\|WP_160670874.1\|952485_952941_-\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_CP047898.1\|WP_160670862.1\|946675_947305_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP047898.1\|WP_160670398.1\|949325_950720_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP047898.1\|WP_160670856.1\|945331_945955_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP047898.1\|WP_160670894.1\|959472_959730_+\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP047898.1\|WP_160670871.1\|952213_952489_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047898.1\|WP_160670880.1\|954011_954764_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181126
NZ_CP047898.1\|WP_160670889.1\|956927_957713_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP047898.1\|WP_160670868.1\|951319_952213_-\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401
NZ_CP047898.1\|WP_160670877.1\|953063_953789_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273824
NZ_CP047898.1\|WP_160670847.1\|941766_942648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225203
NZ_CP047898.1\|WP_160670886.1\|955863_956757_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP047898.1\|WP_160670883.1\|954958_955804_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP047898.1\|WP_160670850.1\|942709_944116_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341288
NZ_CP047898.1\|WP_160670865.1\|947588_949187_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP047898.1\|WP_160670841.1\|940502_941288_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP047898.1\|WP_160670891.1\|958525_959350_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP047898.1\|WP_160670844.1\|941300_941633_+\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062

Protein	Function_ID	Function_description	E-value
NZ_CP047898.1\|WP_160670859.1\|945951_946668_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	6.37039e-66
NZ_CP047898.1\|WP_160670853.1\|944105_945305_+\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	9.67586e-132
NZ_CP047898.1\|WP_160670874.1\|952485_952941_-\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.47222e-26
NZ_CP047898.1\|WP_160670862.1\|946675_947305_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	8.97879e-37
NZ_CP047898.1\|WP_160670398.1\|949325_950720_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.33828e-31
NZ_CP047898.1\|WP_160670856.1\|945331_945955_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.22167e-17
NZ_CP047898.1\|WP_160670894.1\|959472_959730_+\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.89986e-50
NZ_CP047898.1\|WP_160670880.1\|954011_954764_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181126	PRK07806, PRK07806, SDR family oxidoreductase.	1.11042e-140
NZ_CP047898.1\|WP_160670889.1\|956927_957713_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.70991e-89
NZ_CP047898.1\|WP_160670868.1\|951319_952213_-\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	2.69959e-52
NZ_CP047898.1\|WP_160670877.1\|953063_953789_+\|SDR-family-oxidoreductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	4.95364e-109
NZ_CP047898.1\|WP_160670847.1\|941766_942648_-\|hypothetical-protein	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	3.29633e-97
NZ_CP047898.1\|WP_160670886.1\|955863_956757_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.21619e-84
NZ_CP047898.1\|WP_160670883.1\|954958_955804_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	7.12697e-22
NZ_CP047898.1\|WP_160670850.1\|942709_944116_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	1.65372e-80
NZ_CP047898.1\|WP_160670865.1\|947588_949187_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	3.84684e-169
NZ_CP047898.1\|WP_160670841.1\|940502_941288_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.34362e-141
NZ_CP047898.1\|WP_160670891.1\|958525_959350_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	1.62462e-58
NZ_CP047898.1\|WP_160670844.1\|941300_941633_+\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	3.43847e-31

>NZ_CP047898.1|WP_160670398.1|949325_950720_-|IS1380-family-transposase
MQLFHRSTRVSAAFDDSNLVSAAGLVPAMALAVKTCLGELADQWLTLPGYFGANAGLKVTALVAGMVAGADSIDDMALLRHGGMKKLFAGAYAPSTLGSFLRSFTFGHVRQLDALAARWLVNVAAVAPITSGIDDYALVDIDDTIKEVHGYRKQGSGYGYSGVRGLNALIGILSTATAAPVIIGARLRKGSSGSPRGAGKFIADILATVKRLRGKDATGLVLLRADSAFYGHPVVAAAHRAGAKVSITARMDPAVKRAIATINEHAWTTIEYTDAVRDETTGAWISSAEVAETAFTAFVGRKKAERIHGRLVVRRIPELNAKAGAGQQTLFDTHRFHAFFTTSALDTVTADKTHRQHAIIEQINADLKDSALAHLPSGKFTANAAWLVLASIAFNLSRAIGTLAGPDLGKARSGTIRRKLITVPARIATSARKIVLHLPAHWPWETSWSRLFEAACGPPRTATI
>NZ_CP047898.1|WP_160670865.1|947588_949187_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MITVQDLELRAGARLLMDQVSFRIDKGDKIGLVGRNGAGKTTLTRVLAGEGQPAGGKVTRSGEIGYLPQDPRTPDMEQLARDRILSARGLDIAVNKLKQTHEDMASEDTEIQRKAMNRYDRLESEFLAAGGYAAEAEAAAICANLALPDRLLNQPLKTLSGGQRRRVELARILYSDAETMLLDEPTNHLDADSITWLREFLKNHQGGLIVISHDTELLEATVNKVFLLDPNRAKVDFYNMNWKRYLLQRETDERARKRERANAEKKAQVLIDQANKMRAKATKAVAAQNMAKRAERLLGGLEAVRATDRVAALRFPDPSPCGKTPLTADGLSKSYGSLEIFTDVDLAIDRGSKVVILGLNGAGKTTLLRMLAGVDKPDTGEVVAGHGLKVGYYAQEHETLDVDRTVLQNMRSSAPDMNDAEVRNILGSFLFSGDDVDKPAGVLSGGEKTRLALATIVASSANVLLLDEPTNNLDPASRAEILGALSNYTGAVVLVSHDEGAVAALNPERVVLLPDGIEDHWNEDYLDLITLA
>NZ_CP047898.1|WP_160670862.1|946675_947305_-|biotin-transporter-BioY
MSQTDSAVSGTASRLRSRWNATDLGLIAVFAALVAGSALVPGIAANVFGIPITFQTLAVMLTGLMLGPGRGFAAVGLYTLLGLAGLPIFSQGRSGLGILAGPSAGYIIAFPIAAAVVGWLATVVIRRTTRARELWFFASSMVTSIAVVHLLGVAGIALNTKATLGEAFLADLVFYPGDVIKNILAAVIAVALHRAFPDVLVRRVKRINN
>NZ_CP047898.1|WP_160670859.1|945951_946668_-|ABC-transporter-ATP-binding-protein
MATISFRQAIVAVAVDTSPEPKTLLQDVTLELTEQRVGVIGANGSGKSTLLRLINGLVQPSSGSVSVDGADTVRAVRAVRRQVGFVFTDPLSQLVMPTGREDVELSLRRPVRNGAERHRLAEAALERLGLLPLADQSIYELSGGERQLMALAAVLAVNPAVLVLDEPSTLLDLRNRELLRRTLSGLDQQIVMSTHDLDLALEMDRVLVVEAGRIMFDGGPAAAVDAYRALVTNGLAAP
>NZ_CP047898.1|WP_160670856.1|945331_945955_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MRGHGFLLANYVPGNSIIHRTPLAVKFLLVVGCGLVSFMVVDWLVSAAVLAALGVLFLLSGAGARRLLSAVRPVALVLVVIGLFQWWQLGGPTAARIVLNIMVCVVAASLLTVTTPMQRILDGVVSLATPFRRFGADPERFALTIAIMLRSIPYIAGAFADVRDSARARGLERNPRALVLPVFITTVAFARQTGEALAARGLGDAED
>NZ_CP047898.1|WP_160670853.1|944105_945305_+|thiolase-family-protein
MTADLLPADRQPVIIAARRTAIRRANGALKELRAHQLLAPVLVNLLADTQVPAEAVTDVVIGNAVGGGGNVARLALLEAGLPVSVPGLTVDRQCGSGLDAIVLAARLVAAGGTPVYLAGGVESISTAPLRAYRDNDGEPAFFARAQFVPRSFGDPDMGVAAENVAARLEVSRERQDASALRSHQRALAAARAGCFAAEITTLETPAGPISADDGPRAGLTAAVLKRFPPAFVPGGTVTAGNSCFDADAASAVVITSLQRARELGAKDGLLVLGSDTAGVDPDVLGIGAAIAGQRLLLARGLSADSVDLVEFNEAFASQTLACLDQLGIDPERANLDGGALALGHAYGASGAVLVTRLLAQARRAGNHGSLALALISIAGGMGTAALLRYELLAGGQQVP
>NZ_CP047898.1|WP_160670850.1|942709_944116_+|long-chain-fatty-acid--CoA-ligase
MPFLDKIQRWAEERPHDTAVVVAGRRLRWAELKDAAAAALPETAAVTVLAEANSVDFAVRFAAAVAGGRQCAVLDPTWPTSLHEEIVQRLAESAKPGTVSAADALADGPPDSTFLIGLTSGTTTVPKAFTRSRQSWRQSFDASIEFFGLAQDDVTLAPGPLAASLNLYALAECLYAGSEFQTLERFDVGGVHAAITHDGVTRLILVPTMLRLLSERGLTGCVDAAGIRTIICAGSKLDARTLEAARRWAPNATIYEYYGASELSFVSGAGLAAGELLDAGGTGIGHPFPGVDVRILDDDGSELQDGEAGNICVRSGMVSNGYLWGDDGQALRSFNGWFTVGDQGYLVAGELHILGRRADMILTSGKNVYPHEVELALAAVPGVAAAVAAGIPDDLRGQRVVAGVIPSHGGVTAMQLKAGLENILPRDKRPHQYFALSELPTTDRGKVSRRILLDWIGSHDPRARHLDR
>NZ_CP047898.1|WP_160670847.1|941766_942648_-|hypothetical-protein
MSFNDNVQLDPSQVQDRRGMGRGAKVGGGIGGGIILLIAVLLGVNPALLEGLTGGAGTAEQNQGTSPACTTGADADARLDCRITGTVNSLNAFWPAYLQDYNVKYPQPETVIFAEAVSTGCGTASSAVGPFYCPNDSTAYFDPGFFQELVDRFGSSGGPLAQEYVVAHEFGHHIQNVLGYLDRAQQDPQGPESGAVRTELQADCYAGLWVKHASTQPGPDGQPFLEPITQQDLNDALSAASAVGDDRIQEAATGRVSPEAWTHGSSEQRQKWFQTGYTTGDINQCDTFSAPSL
>NZ_CP047898.1|WP_160670844.1|941300_941633_+|metal-sulfur-cluster-assembly-factor
MTEINVARTGLEDVEEALKDVIDPELGVNIVDLGLLYGLKYSDDDGALLIDMTLTTAACPLTDVIEEQVGKSLDGVVDDWRLNWVWMPPWGPERITDDGKDQMRALGFNI
>NZ_CP047898.1|WP_160670841.1|940502_941288_+|Fe-S-cluster-assembly-ATPase-SufC
MSTLEIKDLHVSIDTEQGTKEILKGVSLTIKTGQTHAIMGPNGSGKSTLASTIAGHPRYKVTNGTITLDGEDVLAMSVDQRARAGVFLAMQYPVEVPGVSMTNFLRTAKTAIDGEAPKLRTWTKDVKAAMAQLRIDADFAERNVNEGFSGGEKKRVEILQLELFKPKFAILDETDSGLDVDALKVVSEGVNRAHEAGNMGTLLITHYTRILRYIKPDFVHVFVDGQVVEEGGPELADRLEDEGYDRYATGAGAATIAAAQA
>NZ_CP047898.1|WP_160670868.1|951319_952213_-|SURF1-family-protein
MYRFLFSSKWLGYLLLAAIFAAACVFLGRWQMDRRAETLAEINRVVTNYSATPISFDQARDEFSTLDPAKEWTQVELKGTYDPDGQRIVRNRPLNGQPGYEVVVPFRLQSGETVVIDRGWLPIGNKNPGSPDSVPVPPAGPVTAVVRLKHGEPQLDRGAPNGQLASIDLPTYADQLGYPVLTGAYGQLASESPAPADMPFPFPKPATEEGTHLSYSLQWFAFGVLMFVGFGYAARQQARNAAIDAEDVAEGEDGLTDSGSTVHSAAAAARRRPPVARKRKKATAEEEEDALLDAQGY
>NZ_CP047898.1|WP_160670871.1|952213_952489_-|hypothetical-protein
MNIFDLAAGTAGPPPAMAAMCSRKACRAEASWQLLWNNPKIHTPERRKTWLACDDHRDWLEDYLQTRGLWKETLVLVAGQDTRQAPVGQDG
>NZ_CP047898.1|WP_160670874.1|952485_952941_-|DUF3099-domain-containing-protein
MERDQSAVTLENHAGHSVPGDPERFSGDSGVHSITDAAAAHSEDMRQRMIKYAVAMGIRMVCLILIFVVDGWFKLVMVAGAVFLPWIAVVIANGGDQAELHSDSLLDSAPIAELESPSGPPEEDVSTSAVIEGELIDDDDEPTQEQERRAS
>NZ_CP047898.1|WP_160670877.1|953063_953789_+|SDR-family-oxidoreductase
MSEAATAARSVLITGGNRGIGLAIALAFLANGDKVAVTYRSASELPAGILGVKADVTDEASVDAAFTEVEAAHGPVEVLVANAGITKDTLLMRMSEDDFTSVIDTNLNGAFRVIKRASKGMIRMRKGRVVLISSVSGLYGAPGQINYSASKAGLVGIARSLTRELGSRGITANVVAPGFINTDMTAELPEATQKNYLSSIPAGRFAEASEVADVVRWISSDEAAYISGAVIPVDGGLGMGH
>NZ_CP047898.1|WP_160670880.1|954011_954764_+|SDR-family-NAD(P)-dependent-oxidoreductase
MGLLDNKTAIVTGSSRGIGAEVAKNLAAEGAAVVVNYRQKAPRANKVVAGIEAAGGRATAVGADLTTQEGVQALASAAMENFGSLDVLVLNASGGMESGMADDYALKLNRDAQVNMLNAAVPLMKEGSRVVFVTSHQAHFINSVATMPEYEPVARSKRAGEDALRELLPNLAEKGISLVVVSGDMIEGTVTATLLDRSNPGAIEARRAEAGKLYSVEEFAEVVASMATADVESGHTEYAGGSDYFGKGAE
>NZ_CP047898.1|WP_160670883.1|954958_955804_+|VOC-family-protein
MAQHGEATGRSYPAGVPCWVDSQQPDVEAAMHFYGGLFGWEFEDTAPSGGTGRYVIATLDGQEVGAITGPGTGVAAWNTYVSVDDADAAVRHLLSVGATLKSAPAHAGSGGVQAVLADPEGAEFRIWQARGRPGAQAVNLPGCWNFSDLRTTDPEAAVAFYTKAFDWQFDNLGFGTMIRRPGYGDHLEATVDPNIRVRQSGDLVPRGFEDAVAWLASAAPGGRPQWHVTFTVADRDRTARDAERLGAVILGQDDTEWTRTVLIRDPGGAVFTASQFTPPSG
>NZ_CP047898.1|WP_160670886.1|955863_956757_-|phosphoserine-phosphatase-SerB
MTSNVTAVSYGPKLTASGLDKLRAALTGGGATLQSESRGGDRRFEVHTAELAIADGTDAGISALRRALAQTAQDGLDTAIVPASLRAAPRKLLIMDVDSTLIQQEVIELLAAYAGKREEVAAVTEAAMRGELDFAQSLHARVAVLAGLPAAVVDSVRAEVKLSEGAAELVAAFKAAGHVVAVVSGGFNQILRPIAEDLGLDYWLANELEIVDGALTGKVLGAVIDRAAKEKYLREWAAAEGIAMEHTIAVGDGANDLDMLGAAGIGVAFNAKPAVRAVADSAINMPYLDAVRHIAGV
>NZ_CP047898.1|WP_160670889.1|956927_957713_+|ABC-transporter-ATP-binding-protein
MSDVLELAAVSVVRGAKTLLNKVDWQVKEGERWVILGPNGAGKTTLLQIAAARLHPTSGMAGILEEILGSVDVFELRPRIGLSSAALANQIPGDETVLNVVVTAAYGVTGRWREGYERADERRAFRLLNDWGMGPFLNRAFASLSEGERKRVQIARALMTDPELLLLDEPGAGLDLGGREDLVHRLSELARDEAAPAIVLVTHHLEEVPPGFTHAMLLRDSNVVSSGPIDGVLTAENLSKTFGVELDVSVNAGRYTATARR
>NZ_CP047898.1|WP_160670891.1|958525_959350_+|RNA-methyltransferase
MTIHYLESAGDPRVSDYTQLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHRPRSFFLAEKWLADLQDVLSDYPDVPAFIGSAALLEDITGFHLHRGAMAAMQRPEPVPLRELLAGARRVAVLEDIVDHTNVGAIFRSAAALDIDAVLISPRCGDPLYRRSVRVSMGTVFQVPWARLESWPQDLSLLKDAGFTVAALELTEDAVDVDTLAARNPDRLALVLGTEGAGMSAETLAAVDLAVKIPMRPGVDSLNVAAASAVAFWELRPRGSQGPR
>NZ_CP047898.1|WP_160670894.1|959472_959730_+|type-B-50S-ribosomal-protein-L31
MKSDIHPKYEAVVFNDLASGVSFLTKSTVSSKKTIEWEDGNTYPVIDVEISSESHPFYTGKQRVMDSAGRVERFNSRFKGFGGKK

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Crispr_ID: NZ_CP047898_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047898_2

2775522-2775605

Orphan

Consensus_repeat	Method
GGGTCTCGACAGGCTCGACCACCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047898_2

>merge|NZ_CP047898|2|2775522-2775605|CRISPRCasFinder
GGGTCTCGACAGGCTCGACCACCGGACCAACCCGGTGATTGAGCCTGTCGAAATCAACCGGGTCTCGACAGGCTCGACCACCGG

>NZ_CP047898|2|2|2775522-2775605|CRISPRCasFinder
GGGTCTCGACAGGCTCGACCACCGG	ACCAACCCGGTGATTGAGCCTGTCGAAATCAACC
GGGTCTCGACAGGCTCGACCACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047898.1\|WP_160674675.1\|2761701_2763270_-\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271404
NZ_CP047898.1\|WP_160674710.1\|2778266_2779667_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP047898.1\|WP_160674707.1\|2777290_2778046_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP047898.1\|WP_160674725.1\|2784348_2785299_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|237499
NZ_CP047898.1\|WP_160674727.1\|2785336_2786842_+\|ABC-transporter-substrate-binding-protein/permease	unknown	unknown	gnl\|CDD\|270216
NZ_CP047898.1\|WP_160674684.1\|2767290_2768556_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|379212
NZ_CP047898.1\|WP_160674713.1\|2779684_2781295_+\|malate-synthase-A	unknown	unknown	gnl\|CDD\|236432
NZ_CP047898.1\|WP_160674686.1\|2768852_2770388_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP047898.1\|WP_160674719.1\|2782576_2783389_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|183011
NZ_CP047898.1\|WP_160674689.1\|2770394_2770889_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_CP047898.1\|WP_160674716.1\|2781297_2782566_+\|aldolase	unknown	unknown	gnl\|CDD\|225184
NZ_CP047898.1\|WP_160674698.1\|2774044_2774233_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047898.1\|WP_160674704.1\|2775677_2777183_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP047898.1\|WP_160674692.1\|2771254_2772625_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184
NZ_CP047898.1\|WP_160674730.1\|2786841_2787573_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP047898.1\|WP_160674681.1\|2766430_2767300_-\|FAD-binding-molybdopterin-dehydrogenase	unknown	unknown	gnl\|CDD\|224238
NZ_CP047898.1\|WP_160674678.1\|2763533_2766353_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376913
NZ_CP047898.1\|WP_160674695.1\|2772686_2773928_+\|DNA-polymerase-domain-containing-protein	unknown	unknown	gnl\|CDD\|240135
NZ_CP047898.1\|WP_160674722.1\|2783596_2784352_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP047898.1\|WP_160674701.1\|2774597_2775506_+\|urate-oxidase	unknown	unknown	gnl\|CDD\|274554

Protein	Function_ID	Function_description	E-value
NZ_CP047898.1\|WP_160674675.1\|2761701_2763270_-\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
NZ_CP047898.1\|WP_160674710.1\|2778266_2779667_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	3.52678e-170
NZ_CP047898.1\|WP_160674707.1\|2777290_2778046_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	6.07941e-68
NZ_CP047898.1\|WP_160674725.1\|2784348_2785299_+\|formimidoylglutamase	gnl\|CDD\|237499	PRK13773, PRK13773, formimidoylglutamase; Provisional.	4.9712e-155
NZ_CP047898.1\|WP_160674727.1\|2785336_2786842_+\|ABC-transporter-substrate-binding-protein/permease	gnl\|CDD\|270216	cd00994, PBP2_GlnH, Glutamine binding domain of ABC-type transporter; the type 2 periplasmic binding protein fold. This periplasmic substrate-binding component serves as an initial receptor in the ABC transport of glutamine in bacteria and eukaryota. GlnH belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.37232e-95
NZ_CP047898.1\|WP_160674684.1\|2767290_2768556_-\|XdhC-family-protein	gnl\|CDD\|379212	pfam13478, XdhC_C, XdhC Rossmann domain. This entry is the rossmann domain found in the Xanthine dehydrogenase accessory protein.	1.47902e-46
NZ_CP047898.1\|WP_160674713.1\|2779684_2781295_+\|malate-synthase-A	gnl\|CDD\|236432	PRK09255, PRK09255, malate synthase; Validated.	0
NZ_CP047898.1\|WP_160674719.1\|2782576_2783389_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|183011	PRK11171, PRK11171, (S)-ureidoglycine aminohydrolase.	2.96703e-161
NZ_CP047898.1\|WP_160674689.1\|2770394_2770889_-\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	7.68397e-43
NZ_CP047898.1\|WP_160674716.1\|2781297_2782566_+\|aldolase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	0.00767818
NZ_CP047898.1\|WP_160674686.1\|2768852_2770388_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.43223e-112
NZ_CP047898.1\|WP_160674704.1\|2775677_2777183_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.29591e-176
NZ_CP047898.1\|WP_160674692.1\|2771254_2772625_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
NZ_CP047898.1\|WP_160674730.1\|2786841_2787573_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.98998e-150
NZ_CP047898.1\|WP_160674681.1\|2766430_2767300_-\|FAD-binding-molybdopterin-dehydrogenase	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.04641e-16
NZ_CP047898.1\|WP_160674678.1\|2763533_2766353_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|376913	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase.	1.52227e-174
NZ_CP047898.1\|WP_160674695.1\|2772686_2773928_+\|DNA-polymerase-domain-containing-protein	gnl\|CDD\|240135	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.	7.24113e-118
NZ_CP047898.1\|WP_160674722.1\|2783596_2784352_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	8.331e-42
NZ_CP047898.1\|WP_160674701.1\|2774597_2775506_+\|urate-oxidase	gnl\|CDD\|274554	TIGR03383, Structure_Of_Uricase, urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds. [Central intermediary metabolism, Other].	1.09886e-163

>NZ_CP047898.1|WP_160674701.1|2774597_2775506_+|urate-oxidase
MSNKIVLGDNQYGKAEVRVVKVTRDTDRHQIEDLNVTSQLRGDFEAAHLQGDNAHVVATDTQKNTVYAFAREGIGSPEAFLLRLSEHFTSGFDWVTGGRWEAESYTWDRIQAHGSEHDHSFVRNGQEVRTAVVVRDGNTTHLISGLKDLTVLKTTQSGFVGYPRDKYTTLPETTDRILATDVSARWRYSTGLDFAATDFNKSYDDIKALLLEGFTENYSHALQQTLFDMGKKVLEAHGEVDEIKFSMPNKHHFLVDLSPFGLDNPNEVFFAADRPYGLIEATVQREDSGSAPAAWSGIAGFC
>NZ_CP047898.1|WP_160674698.1|2774044_2774233_-|hypothetical-protein
MYQQDTTPVAPEHTAAPAVQEFYLPLGGGTDPDFYLPADREHVPGRFSRWVQGLPGFGGPRS
>NZ_CP047898.1|WP_160674695.1|2772686_2773928_+|DNA-polymerase-domain-containing-protein
MSPSKTPAQILNIGGTEVRISSPDKVVFPGPGLTKLDLVHYYLAVADGALRGAGGRPMVLKRFPKGIDAEPFFQKRVPENHPAFIDTTTLHYASGTSAEEAVIRDAAGLAWVVNLGCLDLNPHPVRAEDLEHPDELRVDLDPMPGVDWAQIVDVAYVVREVLDDVGLVGWPKTSGSRGLHILVRIAPQWSYRDVRLAAETLAREVENRAPGLATARWWKEERGESVFVDFNQNAKDRTVASAYSIRPLPDARVSTPLTWDEVRTIRPEQFTVRTVLERFADVGDPHAGIDHAAGTLDGLLALAAELGPAEKAPRTGDGSGRRQSLMPLIEVARTRSKPEALAALDEWKSRHGDLIPALHTADVLVDGMRGSSSLWYRVRVNLQHVPEAERPPQEQLIADYDPWAGKQWPGRPG
>NZ_CP047898.1|WP_160674692.1|2771254_2772625_+|8-oxoguanine-deaminase
MAHPHTPSPSRLWIKNPLAVFTANGLDAGGGIVVSGGIIAELVPAGGQPSAPCDETFEAGSHVLLPGLINTHHHFYQTLTRAWGPVANAPLFPWLQNLYPVWARLTPDSLELAVKVALAELLLSGCTTAADHHYLFPAGLEDAIDVEVGVVRELGMRATLTRGSMTLGTDDGGLPPQSTVQRPEVILADSERLISQYHERGDGAVIQIALAPCSPFSVTKEIMTESALLAERMDVRLHTHLAETIDEEDFCHSMFGLRTVDYLESVGWLGNRTWLGHGIHFNDDEIARLGAAGTAVAHCPTSNMRLASGTARVLELEAAGVPVGLGVDGSASNDASNMILEARQALYLQRLRYGASVPVERALGWATRGSAAVLGRSDIGQLAPGMQADLALFRLDELRFSGSHDPVAALLLCGADSADRVMVGGKWRVVDGQIPGLDVAGLVAEHSAAARKLVAG
>NZ_CP047898.1|WP_160674689.1|2770394_2770889_-|nucleoside-deaminase
MSTTVTAEHFLATSIKLATANVLNSGGPFGAVIVTADGRAFEGVNRVTATNDPTAHAEVTAIRTACRELGTFDLSGATLYTSCEPCPMCLASALWARIGNVVFAADRHDAASVGFDDAVFYEYFENEHRDALMPVAKLELGDPQAPAILEPFNTWNTLDSRIDY
>NZ_CP047898.1|WP_160674686.1|2768852_2770388_-|NCS2-family-permease
MADMTILDPADMRTAAEKQAAPAGAGQTAAPRPPASKSFLDSFFQITKRGSTLAREFRGGIVTFFTMAYIVILNPLILGGFSAANAPTDVAGGWLPAAQVGAVTGLTAGVMTIVFGLVANLPFGLAAGLGINSFLAVAVIQEVTWPEAMGLVVINGLLIVLFGATGARTAIFKAVPKELKAAITVGIGLFIAFIGFVDSGFVRPTKGGPPVQLGNDGSITSIPTLVFIVGLLVMGILVARKIQGGLLIGIVATTVLAGVVEAVMHIGPGSADNPGGWHLNTPVLSGQLVSVPDLSLVGQFDLFGSFSRIGGLAATMLVFTLVFTNFFDAMGTMTGLAKSAGVAHKDGTFPKLKSAFIVEGLGAVAGGATSGSSNTVYIDSAAGIGEGARTGLASVVTGVLFLGSMFFTPLTSVVPLEVAASALVVVGAMMMAQIREIKFSKFSIALPAFLTIVTMPLTYSIANGIGVGFISFAVINAASGRARKVHPLMWVVTVGFIIYFARGPINALMGV
>NZ_CP047898.1|WP_160674684.1|2767290_2768556_-|XdhC-family-protein
MLDLIPSLGSWRPGVAGQRCAVATIVAAGGSVPRPLGTSMVVSEHGDVLGSLSGGCVEGAVVDAALEAMRDGGSRLESFGYSAEDAFAVGLSCGGELEVHIQPLGFSPAAMDYAMLNSLAGHHSTAALALIRRLDAGGGAVVVQDPVRFRAMESPELARLVGDHPATVYAAAAQLEPLLQSGSTGLVRLAPPDGCSDSPDRTHPQPITLFVESRLPAARMLIFGANDFGAALVPAGKLLGYDVTVCDARAAFSSQGRFLAADHVVTDWPHRYLAAEAAAGRVDRRSVVCVLTHDPKFDIPLLETALGLGLAYVGAMGSRRSHRQRIDALLADGTPAEALERLHSPIGLDLGAVTPAEVAVSITAEILASRAPARARSGPGSTTTAPLTAPSLKDGSGPIHHHEPRAHEPRTHEPRQEDPWT
>NZ_CP047898.1|WP_160674681.1|2766430_2767300_-|FAD-binding-molybdopterin-dehydrogenase
MDMNTIEAVVPTTDPAEWRDGDAWLAGGTVLFSYGSTVLKRLLDLGEAGWPAVTVSDAGIELAATCTVAELYALPASDAVAGRKWPGLDLFRPCCDSFVASFKIWNMSTVGGNLCTSLPAGPMISLCAGLDATVSILGPGGSSRTVPVATFITGDGQNSLAPGELLRSIHLPASALSAKVAFRRLSLSNLGRSGVLLIGRRDADGGLVITVTAATKRPVQLRFAAARMAGPAALAAAIGTAIPAELYHNDIHGLPEWRRDMTLRLAEEIRAELLEERLTVSGDFWTGPH
>NZ_CP047898.1|WP_160674678.1|2763533_2766353_-|molybdopterin-dependent-oxidoreductase
MAIEINGTATPATPRPGQCLRTFLREQGSFGVKKGCDGGDCGACTVHVDGTPVHSCIYPAVRAEGKAVTTIEGLGQGGALHPVQEQFLAEQGFQCGFCTAGMMMTAATFDDDQKANLPRSLKGNLCRCTGYRSIADAVCGTRDKHNHDGGAAAGAAGPASAAGTTTSRAGQLGDNVPAPAGAAVVTGTARYTLDVPAEELQGLLHLKLLRSPHAHARIVSIDRTAALRVPGVVAVFTHEDAPAQHFSTAQHELYTDDPDDTRVLDDVVRFIGQRVAAVVAESVGAAEAGARALDVDYELLDTVFSPQDAMLPGAPALHGDKDPEKARISRPRQNVVAELHSELGSVAGGFAAADFIHEHTYRTQRVQHVALETHSAIAWLDDDDRLVVRTSSQVPFLVRRTLGRVFDLPEDRIRVVAGRVGGGFGGKQEVLTEDLVALAALTLRRPVQLEFTRTEQFTATTTRHPFTIKLKAGASKDGLLTALELDVVTNTGAYGNHAPGVMFHGCGESLAVYKCANKKVDAHAVYTNTVPAGAFRGYGLSQTIFAIESAIDELAVGIGMDPLEFRRRNMVREGDDMLSTNPEPEEDVHYGSYGLDQCISLVRDALDRGKQRYRDAGLDDLGPDWVTGEGSALSMIDTVPPRGHFAHTRVSLLPDGTYAADVGTAEFGNGTTTVHAQLAATALATTAGKVAVRQSDTDLVEHDTGAFGSAGTVVAGKATLLAATGLASRIITVAAALTGAPESECVLDDGGVDCAGRRVPLADIHNAARHQGVQLAVEGNWDGTPRSVAFNVHGFRVAVNTGTGELRILQSVQAADAGVVVNPRQCRGQIEGGIAQALGAALYEEVRVDDAGRVTTDILRQYHIPSFADVPRSEVYFASTNDQVGPLGAKSMSESPFNPVAPALANAIRNATGVRFGELPIGRDKIYLGLKESGLVPSS
>NZ_CP047898.1|WP_160674675.1|2761701_2763270_-|NCS1-family-nucleobase:cation-symporter-1
MQTTPLTGVDPTPEPTVDMGKAAYPSLGVDALCDAASAASGRTISPTLYNIDLAPTKREGRRWTSYSIFTLWANDVHSLGNYAFAIGLFALGLGGWQILLALGVGAVLLFALLSLSGFMGVKTGVPFPVMSRISFGIRGAQIASLLRGAVAVAWFGIQTYLASVVLRVMLVAMVPSLKELDGNSIMGLSTLGWIAFVGLWIVQLVIVSFGMEMIRKYEAFAGPIILVTMASIAVWIFVEAGGSIAWASSNALEGAEMWRTIFAGGALWVAIYGTFVLNFCDFTRSAVSKKAVVRGNFWGIPINMLLFGAIVVVMAGGQFKINGTIIQSPSDIVQTIPNTLFLVLACLALLILTIAVNLMANFVAPVYALTNLFPKHLNFRKAAWVSGTIGLIILPWNLYNNPLVIVYFLGGLGALLGPLFGVVMADYWLLRRGKVNVLELYSEDPAGAYYYKKGFNPRAIIAMVPAAAIALLIAFVPALEAAAPFAWFVAAGIAAVVYYVISDRAQRLDDVDGESIAVASAH
>NZ_CP047898.1|WP_160674704.1|2775677_2777183_+|purine-permease
MKLKKKSPSPAAKTGRQPSDRPEDQRLSIGSTFAYGFQHVLTMYGGIIAPPLIIGAAAGMSATDIGLLIAACLFVGGLATILQTVGIPFFGSQLPLVQGVSFAGVSTMVAIVQGGGGIQAVFGSVIVASLIGLAITPLFSKIIKFFPPVVTGTVITTIGLTLMPVAANWAMGGNAKAENYGSVANIGLAAATMGIVLLLSKVGNAAISRLSILLAMVIGTVIALFTGMADFSKVGQGDIVAFPTPFAFGVPTFEIAAIISMLIVILVTLTETSADIIAVGEIVDTKVDSRRIGDGLRADMLSSAISPLFNSFTQSAFAQNVGLVAITGIKSRFVVSAGGLILVILGLLPVLGRVVAAVPTPVLGGAGVVLFGTVAASGIRTLSKVEYKNNMNLVIVAASIGFGMIPIAAPKFYDQFPSWFSTIFHSGISSAAVMAILLNLLFNHLKAGNSDNQSVFVAGTGRAVTEADLKCLADGDRYEGGKLIDAEGKEVPVESSSKSEH
>NZ_CP047898.1|WP_160674707.1|2777290_2778046_-|IclR-family-transcriptional-regulator
MAEKASGGVQSVERVFELLELITDAGGDVTLSELSSSTDLPLPTIHRLLRTLVSLGYIRQLPNRRYALGPRLIRLGEGANKQLGAVARPQLKNLVELLGETSNMAVLDSDMVIYVAQVPSLHSMRMFTEVGRRAHTHDTGVGKAILAQLDDDVVRGIVSRTGMPTPTAKSIGDIDALLAELKLIRERGYSIDEEEQELGVRCFAMAVPNAPTPSAISVSGPITRVDQGFADRAVPLLRKAAMAISAELNQN
>NZ_CP047898.1|WP_160674710.1|2778266_2779667_+|NAD-dependent-malic-enzyme
MANPSPGNSITLRVAAPSSFTATSELAAAVGAAGAAITALDVTESHHDTLVVDVTCNTTDDDHAARVKDALNALDGVTVQHVSDRTFLMHLGGKLEVVPKVALRNRDDLSRAYTPGVARVCLAIAEDPSMARNLTVKRNTIAVLTDGSAVLGLGNIGPAAALPVMEGKAALFKQFANVDAWPVCLDTQDTEEIIMIAKAMAPVYGGINLEDIAAPRCFEIEKRLRDELDIPVFHDDQHGTAIVTLAALHNALRVVDKKLSEVRIVVSGVGAAGSAIIQLLKAQGAQHIVAAGRSGAIHSGKQYDDEHRTWIAENTNEEGFSGSLHEAMAGADVFIGVSAPHVIGEEQVAAMAENAIVFAMANPTPEIDPVIASKHAAVVATGRSDFPNQINNVLAFPGFFRGLLDAGASDITPEMLVAAADAIANRVADDELNASYIIPSVFDPHVAADVAAAVAAAAHANAARAL
>NZ_CP047898.1|WP_160674713.1|2779684_2781295_+|malate-synthase-A
MAITVTDRQPVDRAEEILTPKALAFVEELHKRFAGTRNELLEARQVRRDGVARTSRLDFLPETQEIRDGDWKVAEAPAALQDRRVEMTGPATPAKMAINALNSGAKVWLADLEDASTPTWANVIDAILNLRDAATGRLSYTSPEGKEYKLRTDAPLAVVVARPRGWHLPEKHLLIDGEPAVGALVDFGLHFFHVAKQLVLNGQGPYYYLPKMESHLEARLWNEVFVFAQDFLGLGQGTIRATVLIETIPAAFEMDEILYELRDHASGLNAGRWDYLFSIIKYFRDAGEEFVLPDRATVAMTAPFMRAYTELLVKTCHKRGAFAMGGMAAVIPNRKQPQVTAAAFDKVRADKTREANDGFDGSWVAHPDLVSTCREVFDAVLGDPEKGGRPNQLDKQRPEVSVTAEQLIDVASAGGDVTEAGLRLNLYVAVAYTGVWISGSGAVAIHNLMEDAATAEISRSQVWQQIRNKSVLADTGNTVTRELVSRILGEETERLRIEFGDQQFKAYYEPAAKLIEEICLSEDYTDFLTTPAYELV
>NZ_CP047898.1|WP_160674716.1|2781297_2782566_+|aldolase
MAAQSLTAADLAAIDTQLAATDQLLERNYPGDDGTRQPVHTVYVPADRFTPSFAAEWGEQALTTAEAHGGLEKLGTLLGQEPELAAAVAARVGDKLRTEPIEDLRLDFEDGFGDRGDEAEDVAAVSAANAVAAAVSAGTAPPFIGIRFKCFEAPTRVRGLKTLDLFVSTLAQAGELPAGLILTLPKVTTVAQVQAMDFALSRLEEVHGLPAGRLRFEVQVETPQLILGPEGTSPVAQLPHVVPGRISALHYGTYDYSASLQISAEYQSMEHPVADFAKEVMQLAVAGTGIRLSDGSTNIIPVGDAVEDAWKLHGRLVRRSLERGYYQGWDLHAAQLPSRFAATYAFYREGLPAAAARLRNYVERTEGGVMDEPATARALAAFVLRGVQCGAVGTEEVQGLAGVELSQLTALAHPRLAHSTSK
>NZ_CP047898.1|WP_160674719.1|2782576_2783389_+|(S)-ureidoglycine-aminohydrolase
MGKYYTPQGGLPPQTHLTTERAIVTEAYTVIPKGVMTDIVTSTLPGFTNTRSWIIARPISGFSTTFSQLIVEIGPGGGAPKAEFEPGVEGVVFVTKGKVNLTLDGELHQLEEGGYAYLAAGSTWGLENVSDDIVSFQWIRKAYERLEGYEAKSFVTSDAEVEPTAMPDTDGAWKTTRFTDSSDLAHDMQVNIVTFQPGGVIPFPETHVMEHGLYVLEGKAMYLLNNDWVEVEAGDFMWLRAFCPQACYAGGPGQFRYLLYKDMNRQIRLT
>NZ_CP047898.1|WP_160674722.1|2783596_2784352_+|IclR-family-transcriptional-regulator
MPTDSNLSVIGEGNASRIVDILLEFARHRTLTAAQITKTTGIPASAVYRHLAQLVQSGLVAQTRRRGQYSAGPETLRLAANFHQEAMVKGRISEQLQLLSDETRELAAYLVVRGAEALCVDAIEGPQMLRCSYSPGRSLPLLKGASAMALLAHLDPQEQGRIVAGLALSPEEADNLNHELQLVQGRGFGLSYGAVDAGVWGVSFPVFDDGGRLLGAVSTMAPADRAVRREKQLIASTRDAALALGHGEGSR
>NZ_CP047898.1|WP_160674725.1|2784348_2785299_+|formimidoylglutamase
MTNPTTQHTWTGRDDGPGPEHRRWHHAVNTAQAGTPGVALLGFRSDEGVRRNKGRVGAVDGPASIRSALAPMAAPADLLVHDLGDTSVVDGNLEDGQERLGAAVRQALDAGHLPVILGGGHETAFGTYTGLRGSQATDGRRIGIINLDAHFDLRAEAIPSSGTPFRQVAEAESALGHGFNYTVVGISQPGNTEALFRTAQELGVKYLLDEECTESRAEQVRQFVQDFIDSVDVLYLTIDLDVLPAYVAPGVSAPASYGVPLPVVLDVCRQLARSPKLAVVDVVELNPRFDIDARTARTAARLIHTIATERSGHRHA
>NZ_CP047898.1|WP_160674727.1|2785336_2786842_+|ABC-transporter-substrate-binding-protein/permease
MKNRFPRFGWAATTAALLAALLGLAAPAAQAETTPATPSAGKMADLRSGKTTLKVGTDASFPPFEFTDANGTKIGFDIDVVRELASKAGIKNVEFVQMPFGNIVPALQANQIDVGASAIYISPERAKVVDFSEIYYPGGLGMFVSTSNDTVKSLADLAGKKVAVQVGTKSVEWLRQNQPQAELVQVQTNDQMFSSVKLGQADAVVTGQPGGRYFIHEQGGLKQVGERLTNENYGFAFQKSDSDIREAFNTALKDMQSSGDFTKATAKWFGDESSTATGPTKEHSLFNVSSITNSWGPLMQGLGTTLQIIALSLALSLLFGMLGGFAKLSHIRPVRWIGKVYVSVVRGTPFIVQLFFIYFGLPQLGIQLSPMVAGILALGLYSGSYVTEIVRGAIQSVDKGQMEAARSCGMSSASALRHVIIPQAFLRMLPPLGNEFVSLTKNSALVSFVTISELFLVGQTIISRTFDALTVYVFIGLVYYVLTNIIGLAANAIEKKMAVYI
>NZ_CP047898.1|WP_160674730.1|2786841_2787573_+|amino-acid-ABC-transporter-ATP-binding-protein
MALLETKEITKSYGDHHVLKGIDFTIEPGEVVAVIGPSGGGKSTFLRCLNLLETPTSGHVVFDGEDLLAPKVDLDRLRSRMGMVFQQFNLFPNMTALKNVMLPQMDVLKLSKKDAEARAMELLEKVNMTHRAHVYPNRLSGGQKQRIAIARAVAMNPKVMLFDEPTSALDPEVVHDVLDVMAGLAADGMTMVVVTHEMGFARKVADRVVFIDGGKIAADLPPEEFFSESNTNPRIRSFLEKVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	781455-781480	5	0.808
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	262424-262449	5	0.808
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	391444-391469	5	0.808
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	53248-53273	5	0.808
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	43089-43114	5	0.808
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	42217-42242	6	0.769
NZ_CP047898_1	1.1\|950911\|26\|NZ_CP047898\|CRISPRCasFinder	950911-950936	26	NZ_CP010863	Marinovum algicola DG 898 plasmid pMaD8, complete sequence	22576-22601	6	0.769
NZ_CP047898_2	2.1\|2775547\|34\|NZ_CP047898\|CRISPRCasFinder	2775547-2775580	34	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	243339-243372	6	0.824
NZ_CP047898_2	2.1\|2775547\|34\|NZ_CP047898\|CRISPRCasFinder	2775547-2775580	34	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	122912-122945	8	0.765
NZ_CP047898_2	2.1\|2775547\|34\|NZ_CP047898\|CRISPRCasFinder	2775547-2775580	34	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	460945-460978	9	0.735
NZ_CP047898_2	2.1\|2775547\|34\|NZ_CP047898\|CRISPRCasFinder	2775547-2775580	34	KY981271	Curvibacter phage P26059A, complete genome	18170-18203	9	0.735

1. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.808

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
gtggtcgagcacgcgccgcagcgtcg	Protospacer
*******.****** ********.

2. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 5, identity: 0.808

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
tcggtcgtgcacgctccgcagtgcgg	Protospacer
 .***** *************.***

3. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
gtggccgggcacgctctgcagcgacg	Protospacer
****.***********.******

4. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 5, identity: 0.808

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
tcggtcgtgcacgctccgcagtgcgg	Protospacer
 .***** *************.***

5. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 5, identity: 0.808

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
ccggtcgtgcacgctccgcagtgcgg	Protospacer
 .***** *************.***

6. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
cgacctgggcacgctccgcagcgcgc	Protospacer
  . ..********************

7. spacer 1.1|950911|26|NZ_CP047898|CRISPRCasFinder matches to NZ_CP010863 (Marinovum algicola DG 898 plasmid pMaD8, complete sequence) position: , mismatch: 6, identity: 0.769

gtggtcgggcacgctccgcagcgcgc	CRISPR spacer
catgtcgggcacgctccgctgcgcca	Protospacer
   **************** ****

8. spacer 2.1|2775547|34|NZ_CP047898|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.824

accaacccggtgattgagcctgtcgaaatcaacc	CRISPR spacer
tcgagaccggtgattgagcctgtcgaaatctgcc	Protospacer
 * *. ************************ .**

9. spacer 2.1|2775547|34|NZ_CP047898|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

accaa--cccggtgattgagcctgtcgaaatcaacc	CRISPR spacer
--caacccccggtgatcgagcctgtcgagatccgtg	Protospacer
  ***  *********.***********.*** ..

10. spacer 2.1|2775547|34|NZ_CP047898|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

accaacccggtgattgagcctgtcgaaatcaacc	CRISPR spacer
ttgagcctggtgattgagcctgtcgaactcacgt	Protospacer
 . *.**.******************* ***  .

11. spacer 2.1|2775547|34|NZ_CP047898|CRISPRCasFinder matches to KY981271 (Curvibacter phage P26059A, complete genome) position: , mismatch: 9, identity: 0.735

accaacccggtgattgagcctgtcgaaatcaacc	CRISPR spacer
ttctgcacgttgattgagcctgtcgaattcagca	Protospacer
 .* .* ** ***************** ***.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

713483 : 765809

Sulfolobales_Virus_YNP2(14.29%)

integrase,transposase

attL 763347:763363|attR 767375:767391

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160670398.1\|713483_714878_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_160670401.1\|715011_715188_+	hypothetical protein	NA	NA	NA	NA
WP_160670404.1\|715586_716600_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_160670407.1\|716625_717072_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_160670410.1\|717286_718126_-	sulfurtransferase	NA	NA	NA	NA
WP_160670413.1\|718459_719356_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_160670416.1\|719467_720268_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_160678863.1\|720773_721352_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_160670419.1\|721317_722379_+	hypothetical protein	NA	NA	NA	NA
WP_160670422.1\|722893_723625_+	polyprenol monophosphomannose synthase	A0A0N9P7Z4	Sulfolobales_Virus_YNP2	3.9e-20	31.1
WP_160670425.1\|730253_731003_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-07	24.5
WP_160670428.1\|730999_732556_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_160670431.1\|732898_733279_+	hypothetical protein	NA	NA	NA	NA
WP_160670434.1\|733475_733748_+	hypothetical protein	NA	NA	NA	NA
WP_160678865.1\|733813_734014_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_160670437.1\|734010_734379_+	death-on-curing protein	A0A1B3AYM0	Gordonia_phage	6.4e-11	53.1
WP_160670440.1\|735664_736279_+	carbonic anhydrase	NA	NA	NA	NA
WP_160670443.1\|737361_737637_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_160670446.1\|737636_739019_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_160670449.1\|739990_740392_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_160670452.1\|741664_742339_-	response regulator	NA	NA	NA	NA
WP_160678867.1\|742335_743925_-	sensor histidine kinase	NA	NA	NA	NA
WP_160670455.1\|744419_745277_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.4e-31	37.3
WP_160670458.1\|745273_746146_+	ABC transporter permease	NA	NA	NA	NA
WP_160678869.1\|746219_747323_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_160670461.1\|747545_747782_+	hypothetical protein	NA	NA	NA	NA
WP_160670463.1\|748908_749571_+	hypothetical protein	NA	NA	NA	NA
WP_160670466.1\|749794_751267_+	hypothetical protein	A0A1S5SEW3	Streptococcus_phage	5.6e-34	33.8
WP_160670469.1\|751275_751854_+	hypothetical protein	NA	NA	NA	NA
WP_160670398.1\|752121_753516_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_160670472.1\|753904_754198_+	hypothetical protein	NA	NA	NA	NA
WP_160670475.1\|754286_755624_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_160670478.1\|755877_756168_+\|transposase	transposase	A9YX41	Burkholderia_phage	6.1e-09	41.3
WP_160670481.1\|757563_758265_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_160670484.1\|758571_758754_+	hypothetical protein	NA	NA	NA	NA
WP_160670487.1\|759130_760654_+	aromatic amino acid lyase	NA	NA	NA	NA
WP_160670490.1\|761018_761618_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_160670493.1\|761744_762479_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_160670496.1\|762601_763225_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
763347:763363	attL	NA	NA	NA	NA
WP_160678871.1\|763773_764361_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	8.5e-34	46.2
WP_160670499.1\|764357_765809_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
767375:767391	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1267741 : 1308909

Tupanvirus(16.67%)

integrase,tRNA,protease,tail

attL 1296317:1296358|attR 1309310:1309351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160671522.1\|1267741_1271128_-\|tRNA	isoleucine--tRNA ligase	A0A2K9V7W4	Bandra_megavirus	7.1e-149	32.2
WP_160671525.1\|1271483_1272578_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_160671528.1\|1273503_1274307_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_160671531.1\|1274331_1274697_-	DUF488 family protein	NA	NA	NA	NA
WP_160671534.1\|1274748_1277367_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	1.2e-156	36.4
WP_160671537.1\|1277722_1278337_-	DsbA family protein	NA	NA	NA	NA
WP_056340575.1\|1278406_1279687_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-137	58.3
WP_104060840.1\|1279868_1280528_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.2e-37	42.3
WP_160671540.1\|1280566_1281190_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.6e-43	51.4
WP_160671543.1\|1283259_1284195_-	Fpg/Nei family DNA glycosylase	A0A1V0CNR6	Kaumoebavirus	1.5e-08	30.1
WP_160671546.1\|1284194_1284689_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_160671549.1\|1284767_1285784_-	hypothetical protein	NA	NA	NA	NA
WP_160671552.1\|1288477_1288951_+	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_160671555.1\|1290088_1290781_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_160671558.1\|1290785_1291238_+	globin	NA	NA	NA	NA
WP_160671561.1\|1291291_1291948_-	hypothetical protein	NA	NA	NA	NA
WP_160671564.1\|1292011_1292992_+	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_160671567.1\|1293088_1294771_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	3.4e-43	28.5
WP_160678953.1\|1294817_1295099_-	hypothetical protein	NA	NA	NA	NA
WP_160671570.1\|1295483_1296068_-	single-stranded DNA-binding protein	A0A1V0E648	Streptomyces_phage	3.0e-15	45.8
1296317:1296358	attL	NA	NA	NA	NA
WP_160671573.1\|1296451_1296775_-	hypothetical protein	NA	NA	NA	NA
WP_160671576.1\|1296767_1297064_-\|integrase	tyrosine-type recombinase/integrase	A0A222ZES9	Arthrobacter_phage	1.3e-22	54.9
WP_160671579.1\|1297063_1297957_-\|integrase	site-specific integrase	A0A222ZES9	Arthrobacter_phage	1.1e-64	49.1
WP_160671582.1\|1297949_1298444_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_160671585.1\|1298582_1298801_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_160671588.1\|1298911_1299097_+	hypothetical protein	NA	NA	NA	NA
WP_160671591.1\|1299093_1299282_+	hypothetical protein	NA	NA	NA	NA
WP_160671593.1\|1299278_1299521_+	DUF3039 domain-containing protein	NA	NA	NA	NA
WP_160671596.1\|1299631_1300306_+	hypothetical protein	NA	NA	NA	NA
WP_160671599.1\|1300302_1300587_+	hypothetical protein	NA	NA	NA	NA
WP_160671602.1\|1300583_1300727_+	hypothetical protein	NA	NA	NA	NA
WP_160671605.1\|1300723_1301077_+	hypothetical protein	NA	NA	NA	NA
WP_160671608.1\|1301077_1301257_+	hypothetical protein	NA	NA	NA	NA
WP_160671611.1\|1301253_1301892_+	hypothetical protein	NA	NA	NA	NA
WP_160671614.1\|1301888_1302338_+	hypothetical protein	NA	NA	NA	NA
WP_160671617.1\|1302680_1303220_+	hypothetical protein	NA	NA	NA	NA
WP_160671620.1\|1303253_1303922_+	hypothetical protein	NA	NA	NA	NA
WP_160671623.1\|1303925_1304090_+	hypothetical protein	NA	NA	NA	NA
WP_160671626.1\|1304496_1304796_-	hypothetical protein	NA	NA	NA	NA
WP_160671629.1\|1304963_1305347_-	hypothetical protein	NA	NA	NA	NA
WP_160671632.1\|1305454_1305829_+	hypothetical protein	A0A249XNM6	Brevibacterium_phage	1.1e-15	44.6
WP_160671635.1\|1305825_1308909_+\|tail	phage tail tape measure protein	I3NL90	Bifidobacterium_phage	4.1e-87	40.3
1309310:1309351	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2286093 : 2295911

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160670242.1\|2286093_2287635_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_160673664.1\|2287890_2288298_-	hypothetical protein	NA	NA	NA	NA
WP_160670428.1\|2288520_2290077_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_160670425.1\|2290073_2290823_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.3e-07	24.5
WP_160673667.1\|2291705_2291846_-	hypothetical protein	NA	NA	NA	NA
WP_160672855.1\|2291892_2293182_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_160679076.1\|2293348_2294263_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_160673670.1\|2294259_2295018_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.2e-50	41.5
WP_160673673.1\|2295041_2295350_-	hypothetical protein	NA	NA	NA	NA
WP_160673676.1\|2295615_2295753_+\|transposase	transposase	NA	NA	NA	NA
WP_160673679.1\|2295749_2295911_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

3647899 : 3681012

Shigella_phage(40.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160676528.1\|3647899_3649189_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_160676531.1\|3649430_3650444_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.9e-29	34.2
WP_160670478.1\|3650577_3650868_+\|transposase	transposase	A9YX41	Burkholderia_phage	6.1e-09	41.3
WP_160676534.1\|3651769_3651907_-\|transposase	transposase	NA	NA	NA	NA
WP_160676537.1\|3653355_3653706_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_160676540.1\|3653707_3654079_+	DUF1048 domain-containing protein	NA	NA	NA	NA
WP_160676543.1\|3654075_3654885_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-25	30.3
WP_160676546.1\|3654881_3655643_+	ABC transporter permease	NA	NA	NA	NA
WP_160676549.1\|3655741_3656611_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_160676552.1\|3656666_3656885_-	hypothetical protein	NA	NA	NA	NA
WP_160676555.1\|3659417_3660101_-	response regulator	W8CYM9	Bacillus_phage	1.3e-25	29.6
WP_160676558.1\|3660097_3662674_-	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_160676562.1\|3664383_3665640_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_160676565.1\|3666561_3667407_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_160676568.1\|3667773_3668517_-	GAF and ANTAR domain-containing protein	NA	NA	NA	NA
WP_160676571.1\|3668657_3669440_-	GAF and ANTAR domain-containing protein	NA	NA	NA	NA
WP_160679307.1\|3669451_3669697_-	hypothetical protein	NA	NA	NA	NA
WP_160676574.1\|3669696_3670428_-	GAF and ANTAR domain-containing protein	NA	NA	NA	NA
WP_160676577.1\|3670629_3671616_-	hypothetical protein	NA	NA	NA	NA
WP_160679309.1\|3671826_3672630_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_160679311.1\|3672859_3673513_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_160676580.1\|3673584_3674352_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_160676583.1\|3674568_3675162_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_160676586.1\|3675217_3675649_+	hypothetical protein	NA	NA	NA	NA
WP_160676589.1\|3676218_3678279_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
WP_160676592.1\|3678406_3679606_+	hypothetical protein	NA	NA	NA	NA
WP_160676595.1\|3679808_3681012_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.8e-28	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047899_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047899_1

87878-88069

Orphan

Consensus_repeat	Method
GGGCCTAAGTGCAGATTCTGCACTACTGGTTTCTTGCGGAACTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047899_1

>merge|NZ_CP047899|1|87878-88069|CRISPRCasFinder
GAGCCTAAGTGCAGATTCTGCACTACTGGTTTTCCGGAGTTTTTGCCCTGCCCCGTGGGCCTAAGTGCAGATTCTGCACTACTGGTTTCTTGCGGAACTTGCCCACTGGTTTCCTCCAAGGAAGGCTCACCTGCAGGCCCCTCATCGGGCCTAAGTGCAGATTCTGCACTACTGGCTTCTTGCGGAACTTGC

>NZ_CP047899|1|1|87878-88069|CRISPRCasFinder
GAGCCTAAGTGCAGATTCTGCACTACTGGTTTTCCGGAGTTTTTGC	CCTGCCCCGTGGGCCTAAGTGCAGATTCTGCACTACTGGTTTCTTGCGGAACTTGCCCACTGGTTTCCTCCAAGGAAGGCTCACCTGCAGGCCCCTCATC
GGGCCTAAGTGCAGATTCTGCACTACTGGCTTCTTGCGGAACTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047899.1\|WP_069953130.1\|93577_94024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679653.1\|84154_84781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679667.1\|94555_94990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679655.1\|84816_85968_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP047899.1\|WP_160669372.1\|83364_83985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_069953162.1\|94274_94490_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160669373.1\|82989_83346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_069953131.1\|93127_93577_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_069953132.1\|92209_93067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679649.1\|80227_81877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_069953133.1\|91061_92213_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224423
NZ_CP047899.1\|WP_160679659.1\|86365_87190_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP047899.1\|WP_160679647.1\|78707_80231_-\|conjugal-transfer-protein-TraC	unknown	unknown	gnl\|CDD\|273346
NZ_CP047899.1\|WP_160679651.1\|81917_82985_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_157357191.1\|89929_90883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679665.1\|88798_89770_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_CP047899.1\|WP_160679645.1\|76884_78711_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|378923
NZ_CP047899.1\|WP_160679657.1\|85964_86336_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047899.1\|WP_160679663.1\|88433_88802_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047899.1\|WP_069953133.1\|91061_92213_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	4.62003e-11
NZ_CP047899.1\|WP_160679659.1\|86365_87190_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.27653e-09
NZ_CP047899.1\|WP_160679647.1\|78707_80231_-\|conjugal-transfer-protein-TraC	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0.000395362
NZ_CP047899.1\|WP_160679655.1\|84816_85968_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	7.25742e-25
NZ_CP047899.1\|WP_160679665.1\|88798_89770_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	2.33384e-05
NZ_CP047899.1\|WP_160679645.1\|76884_78711_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.08984e-24

>NZ_CP047899.1|WP_160679659.1|86365_87190_-|sigma-70-family-RNA-polymerase-sigma-factor
METRIAEAVMHPKTRGAVWNILAGFGLGQDVDDVVADTAESALKASGSFDPELGHVQGWVLTIAKRRAYDHAKRAGAKGRLQGRLEGESDGPDPALNLVEDDFAQEVVERLAASAESRQILALTEKLVANPDSFRRVAALWMVYQGSVPKASAALGISQEALRDSRREVVRCAHVVRKAVAARSAGDPVTVGTLLGCLPVEGNEDGSWARALSVAVVRAGGFGKVTAASMAEVTGYSLNTCRQYVVEAHWLLQVARTVLEGVETAGAGPEANHH
>NZ_CP047899.1|WP_160679657.1|85964_86336_-|hypothetical-protein
MTFNMDGTGRQEDGFSPGQRAQLEEMMSAQRSQLEEMMSAQQPGKREQKRLARRAARQRILGAMQDTVDAAAPQDGATGFDRTTVRGRAAAWFSRSALTRAALGIAVIAVILTWCVVVLGGNR
>NZ_CP047899.1|WP_160679655.1|84816_85968_-|transglycosylase-SLT-domain-containing-protein
MKMLSRAGGALFITILFAASLLVAVVLGAVSGGRAGASTDPSSCVAPLPGAGLAAGKVPAEYVEAIREAAKASGIPAPILAGQLRQESNFNPKAVSHAGARGIAQFMPSTWASYGQGKDPSDPQAGISAQGKFMGELLKQAKASGFAGDPVDLALAGYNAGWGGVTAVGGIPDNGETAQYVTRIRQFANEFAAKDGTDAVTAGEDKGSGDCDLATGTSSGNDDYPFKDLPHCILNANGGYAGCPAGSQSEFNAFHGECVDFVMWRLNQQFGVTKAPWKIMNGNFRPDGGVLGDARDYRAAWENKGWPVDKTPTVGAVVWYGPSNANASSAGYGHVAIVKEVLKDGSFIEEGYNFGFPPDDHKYYTIKRANSAPDNFLHLPKAG
>NZ_CP047899.1|WP_160679653.1|84154_84781_-|hypothetical-protein
MTTNETTAARKPDRWAMPAAVLGAALALVFLTGCGGGPVVDVTSPPETAAQPTGTVTGTTGEPAPGNGSASASVSPPFTGNPAPPMQGQGVETAQPAWNADAESAALVAADDVMRAFTATTLTSSQWQARIKPLLTPRAQQAWSRADLKYFTATSVTGQPRLDEDRSNPYFVWASVPTNDGDYRVHLNRLEPGAPWLGDMIRPLQLKR
>NZ_CP047899.1|WP_160669372.1|83364_83985_-|hypothetical-protein
MFEGIATGFSQLPLAPEPVNPDQSPDYLAGLRDFAGQFLTGCIVLVVISAIVSVTLFVIGKMTALSNAQAKSLMWSGRVFLGAAIIGSVGGLIFWGSGLGKFNLMPAGAQQPTVEITKKPAKSTCASRVELGAGLFNQDDIAGAVKSLLSDEDSEKYKNTGSVIWLPKGPQCTSENHVADPCSKVEVYAGGSQIEVAPRNTSECKN
>NZ_CP047899.1|WP_160669373.1|82989_83346_-|hypothetical-protein
MSVLTELLVSVPAEGIDPKVTANNTAPWLPVLRDIAGGVMVTCIVLLVIVLIIGVVLLVAGKLGSMSGAQSTGFMILVWGLLGAAVIGSVSGLVFWATTNSLAPAPVAAAAGALLGLG
>NZ_CP047899.1|WP_160679651.1|81917_82985_-|hypothetical-protein
MRFAALAPMGPAEDIQKFFDGGIQGFAASVFDVIKGAFSSTDMNSNWWVSVIGGTVNTHVGGQVTTVVYPGMLTLLVQVMAPVMVILVAAQVVVSLFRSSTVGLIRAGATAVFAIPATYILAGIMFTLIQVMDNISVYILAAGNNDGEDAVTTTVLALFGLSWDPAAKSVVLDENYQQWALAKDQNNPGAILVPVILIFVIWIIALLLAAFMVFRMLGLIVLASLLPIAAMSQPLEAAKGIFKGFGTTALALLIAKPLSALVLKMGFVISATSNTTFQFLAGILCLLMAAVMPVLTMKFMAFLTGGAGDGIIGGGSGIGSAAGRRFERHGGSALRSTRQMSSRIARMPARIGRGR
>NZ_CP047899.1|WP_160679649.1|80227_81877_-|hypothetical-protein
MSAGVVMEEELGWHDVRFGRETKRGVVLGLEMHQLITFGIAMVAIVVTVLVFGFPLGWLIGGTMLLITGPVCCTRFHGTSTLQWGLRWVGGRWSKGTGQGKYLRATRTETPLDLAPAPVHTHGALHAAPDPDGEPPAYRSTIGKKGQIVPGTPERFMLPGELNELLCYELPGGEAFVYDPVNKYGIIAAQVESMNAFALESEDEQINRTEAFSSVLTALSTQEGVEYLQLTDQTSVVSGAKIRDYYKTKGAQAPRVVRDGELVPLAGANINSFASHAYEDLVSNGRGIMHHEGWVVVVLSRKKLEKSITAHGGGLAGFMSLAAGTISSVTESLTPTGTMVRFWMNARELSACIRRATDPASAVEISERTGAFAGVSPASAGPMVMLPEWSTLQTDTGIHRTWWVSEWPRKKASLGFMSKLVFAGDFRHSVTLIAKPYPVSKAMKDITTSLADHDSGLDIQHRLGRPISRAQRLEGTDLEFREMQLTDGFGALKIGGYVTLSASDATELEVNNTKLRNAAAAAQVELRCLYGQQAEGFVASAMPLGRGLL
>NZ_CP047899.1|WP_160679647.1|78707_80231_-|conjugal-transfer-protein-TraC
MKHIGGKSNRLSGLVPVMLDISNGSRQARAQQRLTRARAVAAASVETAGGDDGFPQQAFPAGGKQRMNNLRGGFRLRQRPFSETAFSFATAYPFLAGANLGHKGAYIGEDVYGGGAFVFDPWELYEAKVITGMSMILMGAVGSGKSTCAKSVVCRLVMLGRKALILADRKGEWDVVAQFLGGHTIKVGPGQPDRVNPLDEGIRPSVTPDGEPMTDLRWAAMVRARRLNLLQTIGEILLDRAVQGAEHTALSMALDLTVESAAPGVPTLPGFIEHLRQMSVSTDGSRSVAEAAERLLHAFSRCTQGDLKGMFDGETTANFDPELPIITVNTKALVGASKEARKIAYACTGSWAESMVTNSDSGQRLCVYEEGWDSVSDEASLTRMMEAWKLARDYNIFNVLIIHKLGDLDIAGDAGSKMAAMARSLLGDTTVKVIYRQETANLAVTERELGLTRAEREDVNRSAQGTGLWKVGPYRTVSVKNQRTTAEVPVFDTDGKMRSNRGGEAAA
>NZ_CP047899.1|WP_160679645.1|76884_78711_-|TraM-recognition-domain-containing-protein
MKAMDKGTQMAVLSLGLIALVLYALYLPGQIAAFFRCGSFTTLPSILQPLGFLNPSSPADASVYGVTAAGCGPESGAVIVWMVLLVALAVGGGVTVWKLVHDWKLSDEYFVKDVMGRDGLAKIKEIKNTVGEKKILERAKSIRPTLGRPSVEDASIRIGHVLSQAVLVSCEESIVLVGPPRSGKGFHLLISAILDAPGSCITTSTRADNYAATRELRSNGGPCTLFDPQGLTGAKSSLKWSPITGCERPEVAARRASSLIGSSGLGKSGSNQEWAGAAISILQSLLHAAALGGHSVDELYLWGTAPTTARTAQKILLEHPDAAFGWGQSLKSILDGDPKMLGSRWFGVEGALAGLAVPLVRETLKPAGPAEELVPAKFIRDRGTLYLIGTKSGGGAMAPFLIAMMDEITETAREMAIRLPGNRLDPPLSLVLDEIANMSSSWPGLVTLMSDGGGLGISPLVVLQSLAQARGGWGAEEAQAVFDSATVKIQLGGSGNEKDLESFVKLLGTRAVEEGSVTHTADGYSSSTSKREKDVMTVSELRRLPFGYGLFVGRNGRPFLLKMTRWIDRPDAPQIKAGIRKFSSSLLVELTDSTAAGTQERISEEVPG
>NZ_CP047899.1|WP_160679663.1|88433_88802_-|hypothetical-protein
MSTKAMAWAFEKEVSAETWNVLLRLAHDADDAGLVVFSHGYLSHLTGEPQGRVQAALAELVVKGLVKSTSLPDSAAVAEAGHDQALCLQLGNTAQERAVPQEFLDEVNADRARRQAEIGGIL
>NZ_CP047899.1|WP_160679665.1|88798_89770_-|DUF2637-domain-containing-protein
MTPGIDRKTDRINPDSMATLWLTVCLVGFLAVASFMVSFTGLHEVAAWAGLPVWLRWAVPVFIDVAILAYTLAVLIHRHRGERTWASWISLGGFTVFSMVANAAHALSIPHPDFGQQIIGAAIASLAPLAVFAATEQLGRLVIGRPDAGEPAAKLTVGSVGTAPDGPGSGGEPLPEAEIAHVPATWLAAESTAGEAVRASLPVTQDEPAVPVPVGAATAPSTESVPAVPAETSSDGLTSHVAPVPALNVSPRPSLSVVGRKPKAMDLEQWVGAQLSAGTQPTGKAAAKFLNVSERTGRTRLNDLKATQPALFAGAVLKEGTNA
>NZ_CP047899.1|WP_157357191.1|89929_90883_-|hypothetical-protein
MTSSERQTSFSDSLTEERPAGVDVAGPGCGRSHSSSLDAQSARELTRQIKVALEHSYTLIITAYQGRAWAAMGYSSWDAYCQGEFGSLALQPPREERQAVVMSMREAGMSTRAIGSALQASHTTIERDIASSRRAIEVADNSAGGTYVPPAEANVVGLDGKSYPAAPARPRKPERGTFEDVPLSDELLNMSPSEMGIAALSPSSFTSRPARERKDAARRLTGSMDSPLPLVIKLAGQITLDPTTLTVDEDSDAETLTELAADASRGVLALSHVLTAIDVKVLSGDVDDAVALTAVVTDAVDELGRFLDALHSRKRRP
>NZ_CP047899.1|WP_069953133.1|91061_92213_+|alpha/beta-fold-hydrolase
MLTTRLGLVCLAFLVPTAALSGFAVVMARKVVKRGPKDYRRAELTDDGRGIRIDLDDYTKAPGDFGVFDPAAASYTRVGEVTLIDEDQKCVERRIDPPGSGPECLGPLVDWTPDVFFEPSAVGGRYEEVDIPTSYGAAPAWLFERENTDVWVIHIHGSWTDRAIMFRDVHAFSPLGFTSLVPSFRSDPEVSPPQAESSHLGQTEWHDVESAVAYAVAHGARRIILSGWSMGGTIALLTAERSAYREQIAGIVLVGPVTSWRKTITAGAVRAGVPAIGAGLVVRLLQAPLFAKMLGLQEPIDFDALEWVDVPDRVAVPTLVLHSKADQEVPWEISAAFQRANPGTVTLIPLPEAHHTQEWNASPHAFTSQLTGWVNRTIATGQS
>NZ_CP047899.1|WP_069953132.1|92209_93067_-|hypothetical-protein
MVKMKEARASWLASVFGLAALYVLGTVTPLEDLDSALGGINVTNLLQSSFALLAIFFFNDSVRRLANVDEVRWTYYAPLLILPVMAFSFALIEDKAPTAASFIVSRLDQLPTVVYSGMYMIALLFTVLRAVYMLRHKAKGLYAAFTIGLLIVAAACSCHIAYVALFHFTPWHALALDIGSWWDRLFYSGLSVTAAGWLILFLSKQLARVRLWTADAFWLTALRIRVNADRSRLSPAWDLLNETLENGIYKSLIVLHNYERGNLITFPEPRQDRIARIEAKLDARV
>NZ_CP047899.1|WP_069953131.1|93127_93577_-|hypothetical-protein
MALPPVQEKVRELCGVGTTSMEEVVERLTVLCEKPINLIEYKESWGALTAFKAEFEDRINVYFPPQNSLQYKLHCIYHELGHIYLESFQTPLALPSLSEEMLRETADAINISCRAVPNHPVERWVEDFAFEMSKKTRGNSSSDPDPFLC
>NZ_CP047899.1|WP_069953130.1|93577_94024_-|hypothetical-protein
MANGGRSVFLTQQQKKERLADRMGILVDIWESDNNTALTYPHVQEALSTHGIHLSRTRWSYLINGTGSLVTDQELLKGIAEFVFDVPATYLCDLNSETPPEVEARMDFLVQMRKLKVKNFAARNLGATSPETLRTITKIIDASMNGDE
>NZ_CP047899.1|WP_069953162.1|94274_94490_+|hypothetical-protein
MEEYRAPKLIGKRAPLNCLVLPDQHYRAWMAMQRYNMSFGEYVGALIDRAAGLPNKLDGMHQEALAIDKAG
>NZ_CP047899.1|WP_160679667.1|94555_94990_+|hypothetical-protein
MSDPIQHPISKLGFFLEYTSPWLIELSEAAATLEQARSKPHVLTDHDVSETRRVYTEQAEDLTLFEDTSARWAAQANLTAEQRAGLATLGSNLVQLRHLNTSILELTDYLETRTIERVLATPDIELGLSEFLKHFSGQRPDTTN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047899_1	1.1\|87924\|100\|NZ_CP047899\|CRISPRCasFinder	87924-88023	100	NZ_CP047898.1	24621-24720	40	0.6
NZ_CP047899_1	1.1\|87924\|100\|NZ_CP047899\|CRISPRCasFinder	87924-88023	100	NZ_CP047898.1	4960721-4960820	40	0.6

1. spacer 1.1|87924|100|NZ_CP047899|CRISPRCasFinder matches to position: 24621-24720, mismatch: 40, identity: 0.6

cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	CRISPR spacer
cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	Protospacer
************************************************************

2. spacer 1.1|87924|100|NZ_CP047899|CRISPRCasFinder matches to position: 4960721-4960820, mismatch: 40, identity: 0.6

cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	CRISPR spacer
cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047899_1	1.1\|87924\|100\|NZ_CP047899\|CRISPRCasFinder	87924-88023	100	NZ_CP047899	Pseudarthrobacter sp. YJ56 plasmid unnamed1, complete sequence	87924-88023	40	0.6
NZ_CP047899_1	1.1\|87924\|100\|NZ_CP047899\|CRISPRCasFinder	87924-88023	100	NZ_CP015735	Arthrobacter sp. U41 plasmid unnamed3, complete sequence	27960-28059	41	0.59

1. spacer 1.1|87924|100|NZ_CP047899|CRISPRCasFinder matches to NZ_CP047899 (Pseudarthrobacter sp. YJ56 plasmid unnamed1, complete sequence) position: , mismatch: 40, identity: 0.6

cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	CRISPR spacer
cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	Protospacer
************************************************************

2. spacer 1.1|87924|100|NZ_CP047899|CRISPRCasFinder matches to NZ_CP015735 (Arthrobacter sp. U41 plasmid unnamed3, complete sequence) position: , mismatch: 41, identity: 0.59

cctgccccgtgggcctaagtgcagattctgcactactggtttcttgcggaacttgcccac	CRISPR spacer
cctgccccgtggacctaagtgcagattctgcactactggtttcttgcggaacttgcccac	Protospacer
************.***********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047898

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection