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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047816 Staphylococcus aureus strain UP_1484 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047815 Staphylococcus aureus strain UP_1484 chromosome, complete genome 7 crisprs cas3,csa3,DEDDh,DinG,WYL 3 3 7 0

Results visualization

1. NZ_CP047815
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_1 781366-781449 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_2 788523-788605 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_3 1005622-1005714 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_4 1631645-1631730 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_5 1717783-1717865 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_6 2117119-2117218 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047815_7 2379813-2379910 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP047815.1 1015598-1015629 0 1.0
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP047815.1 1328637-1328668 0 1.0
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP047815.1 1416344-1416375 0 1.0
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP047815.1 1924093-1924124 0 1.0
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP047815.1 1631613-1631644 1 0.969
NZ_CP047815_2 2.1|788549|31|NZ_CP047815|CRISPRCasFinder 788549-788579 31 NZ_CP047815.1 1015614-1015644 2 0.935
NZ_CP047815_2 2.1|788549|31|NZ_CP047815|CRISPRCasFinder 788549-788579 31 NZ_CP047815.1 331490-331520 2 0.935
NZ_CP047815_2 2.1|788549|31|NZ_CP047815|CRISPRCasFinder 788549-788579 31 NZ_CP047815.1 1775266-1775296 2 0.935
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 233931-233962 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 331391-331422 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 1120253-1120284 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 1204178-1204209 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 1328695-1328726 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 1416286-1416317 2 0.938
NZ_CP047815_4 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder 1631672-1631703 32 NZ_CP047815.1 1775395-1775426 2 0.938

1. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to position: 1015598-1015629, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaattc	Protospacer
********************************

2. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to position: 1328637-1328668, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaattc	Protospacer
********************************

3. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to position: 1416344-1416375, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaattc	Protospacer
********************************

4. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to position: 1924093-1924124, mismatch: 0, identity: 1.0

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttcttttcgaaattc	Protospacer
********************************

5. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to position: 1631613-1631644, mismatch: 1, identity: 0.969

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
cgcattgcctgtagaatttctttacgaaattc	Protospacer
*********************** ********

6. spacer 2.1|788549|31|NZ_CP047815|CRISPRCasFinder matches to position: 1015614-1015644, mismatch: 2, identity: 0.935

tttcatttcgaaattcactatgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
**** *********** **************

7. spacer 2.1|788549|31|NZ_CP047815|CRISPRCasFinder matches to position: 331490-331520, mismatch: 2, identity: 0.935

tttcatttcgaaattcactatgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
**** *********** **************

8. spacer 2.1|788549|31|NZ_CP047815|CRISPRCasFinder matches to position: 1775266-1775296, mismatch: 2, identity: 0.935

tttcatttcgaaattcactatgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
**** *********** **************

9. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 233931-233962, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

10. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 331391-331422, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

11. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 1120253-1120284, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

12. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 1204178-1204209, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

13. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 1328695-1328726, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

14. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 1416286-1416317, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgtaagctgacttttcgtcagct	Protospacer
*********** ************ *******

15. spacer 4.1|1631672|32|NZ_CP047815|CRISPRCasFinder matches to position: 1775395-1775426, mismatch: 2, identity: 0.938

gcacattattgaaagctgacttttggtcagct	CRISPR spacer
gcacattattgaaagctgactattggccagct	Protospacer
********************* ****.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047815_1 1.1|781392|32|NZ_CP047815|CRISPRCasFinder 781392-781423 32 NZ_CP009619 Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence 270872-270903 8 0.75
NZ_CP047815_5 5.1|1717809|31|NZ_CP047815|CRISPRCasFinder 1717809-1717839 31 KM359505 Prochlorococcus phage P-TIM68, complete genome 102706-102736 8 0.742
NZ_CP047815_6 6.1|2117153|32|NZ_CP047815|CRISPRCasFinder 2117153-2117184 32 MK448986 Streptococcus phage Javan570, complete genome 20686-20717 9 0.719

1. spacer 1.1|781392|32|NZ_CP047815|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.75

cgcattgcctgtagaatttcttttcgaaattc	CRISPR spacer
tgcattacctgtagcatttcttttttcaacta	Protospacer
.*****.******* *********.  **.* 

2. spacer 5.1|1717809|31|NZ_CP047815|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 8, identity: 0.742

cagagaatttcgaaaagaaattctacagacc	CRISPR spacer
ttaactatttccaaaagaaattatacagatc	Protospacer
. .*  ***** ********** ******.*

3. spacer 6.1|2117153|32|NZ_CP047815|CRISPRCasFinder matches to MK448986 (Streptococcus phage Javan570, complete genome) position: , mismatch: 9, identity: 0.719

cttatgcagttgatgcgcagcatccaactgtg	CRISPR spacer
gatttgaagttgatgcgcaacatccaaaacgg	Protospacer
  * ** ************.*******    *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 712997 : 720817 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 732788 : 747463 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 990851 : 999324 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1570671 : 1578983 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1646837 : 1655880 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1780396 : 1851387 69 Staphylococcus_phage(95.92%) tRNA,protease NA
DBSCAN-SWA_7 1978039 : 1983718 6 Staphylococcus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage