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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047835 Staphylococcus aureus strain UP_883 chromosome, complete genome 12 crisprs csa3,cas3,DinG,DEDDh,WYL,RT 6 5 10 0
NZ_CP047836 Staphylococcus aureus strain UP_883 plasmid unnamed, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP047835
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_1 390774-390855 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_2 423230-423309 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_3 898049-898130 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_4 920958-921049 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_5 998712-998793 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_6 1117958-1118036 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_7 1166678-1166762 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_8 1384332-1384424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_9 1873328-1873412 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_10 2303902-2303988 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_11 2610039-2610124 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047835_12 2622364-2622454 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 78316-78347 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 606080-606111 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 694259-694290 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1166988-1167019 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1222633-1222664 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1228067-1228098 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1765232-1765263 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1873401-1873432 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1898534-1898565 0 1.0
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 2465530-2465561 0 1.0
NZ_CP047835_9 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder 1873354-1873386 33 NZ_CP047835.1 694154-694186 0 1.0
NZ_CP047835_9 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder 1873354-1873386 33 NZ_CP047835.1 972543-972575 0 1.0
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 694154-694184 0 1.0
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 1898488-1898518 0 1.0
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 78247-78277 0 1.0
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 972545-972575 0 1.0
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 1222794-1222824 0 1.0
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 606090-606123 1 0.971
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1166998-1167031 1 0.971
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1228077-1228110 1 0.971
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1765242-1765275 1 0.971
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1749952-1749985 1 0.971
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1873389-1873422 1 0.971
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 247236-247267 1 0.969
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1097225-1097256 1 0.969
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1215369-1215400 1 0.969
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 1749964-1749995 1 0.969
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 2303977-2304008 1 0.969
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP047835.1 390685-390711 1 0.963
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP047835.1 1215469-1215495 1 0.963
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP047835.1 898038-898064 1 0.963
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP047835.1 1117954-1117980 1 0.963
NZ_CP047835_9 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder 1873354-1873386 33 NZ_CP047835.1 1167033-1167065 1 0.97
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 2465427-2465457 1 0.968
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 1167035-1167065 1 0.968
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 2054708-2054738 1 0.968
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 78326-78359 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 972507-972540 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1215379-1215412 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1222643-1222676 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 247224-247257 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 694247-694280 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 1898522-1898555 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 2303965-2303998 2 0.941
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP047835.1 2465518-2465551 2 0.941
NZ_CP047835_5 5.1|998737|32|NZ_CP047835|CRISPRCasFinder 998737-998768 32 NZ_CP047835.1 898189-898220 2 0.938
NZ_CP047835_6 6.1|1117981|33|NZ_CP047835|CRISPRCasFinder 1117981-1118013 33 NZ_CP047835.1 121205-121237 2 0.939
NZ_CP047835_6 6.1|1117981|33|NZ_CP047835|CRISPRCasFinder 1117981-1118013 33 NZ_CP047835.1 1166674-1166706 2 0.939
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP047835.1 2499719-2499745 2 0.926
NZ_CP047835_9 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder 1873354-1873386 33 NZ_CP047835.1 998783-998815 2 0.939
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 423290-423320 2 0.935
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 998785-998815 2 0.935
NZ_CP047835_10 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder 2303930-2303960 31 NZ_CP047835.1 1222564-1222594 2 0.935

1. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 78316-78347, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

2. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 606080-606111, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

3. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 694259-694290, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

4. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1166988-1167019, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

5. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1222633-1222664, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

6. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1228067-1228098, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

7. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1765232-1765263, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

8. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1873401-1873432, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

9. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1898534-1898565, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

10. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 2465530-2465561, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

11. spacer 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder matches to position: 694154-694186, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
*********************************

12. spacer 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder matches to position: 972543-972575, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
*********************************

13. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 694154-694184, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

14. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 1898488-1898518, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

15. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 78247-78277, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

16. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 972545-972575, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

17. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 1222794-1222824, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

18. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 606090-606123, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

19. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1166998-1167031, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

20. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1228077-1228110, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

21. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1765242-1765275, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

22. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1749952-1749985, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

23. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1873389-1873422, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

24. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 247236-247267, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacagacaa	Protospacer
****************************.***

25. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1097225-1097256, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttctaaaagaaattctacaggcaa	Protospacer
*********** ********************

26. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1215369-1215400, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaatgaaattctacaggcaa	Protospacer
*************** ****************

27. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 1749964-1749995, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
caaagaatttcgaaaagaaattctacaggcaa	Protospacer
**.*****************************

28. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 2303977-2304008, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacagacaa	Protospacer
****************************.***

29. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to position: 390685-390711, mismatch: 1, identity: 0.963

cggggccccaacacagaagctggcgga	CRISPR spacer
cggggccccaacacagaagctgacgga	Protospacer
**********************.****

30. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to position: 1215469-1215495, mismatch: 1, identity: 0.963

cggggccccaacacagaagctggcgga	CRISPR spacer
cggggccccaacacagaagctgacgga	Protospacer
**********************.****

31. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to position: 898038-898064, mismatch: 1, identity: 0.963

cggggccccaacacagaagctggcgga	CRISPR spacer
cggggccccaacatagaagctggcgga	Protospacer
*************.*************

32. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to position: 1117954-1117980, mismatch: 1, identity: 0.963

cggggccccaacacagaagctggcgga	CRISPR spacer
cggggccccaacacagaggctggcgga	Protospacer
*****************.*********

33. spacer 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder matches to position: 1167033-1167065, mismatch: 1, identity: 0.97

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgagaatccaatttctctttgttggggccca	Protospacer
****.****************************

34. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 2465427-2465457, mismatch: 1, identity: 0.968

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctatgttggggcc	Protospacer
******************** **********

35. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 1167035-1167065, mismatch: 1, identity: 0.968

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgagaatccaatttctctttgttggggcc	Protospacer
****.**************************

36. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 2054708-2054738, mismatch: 1, identity: 0.968

attgggaatccaatttctctttgttggggcc	CRISPR spacer
atcgggaatccaatttctctttgttggggcc	Protospacer
**.****************************

37. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 78326-78359, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

38. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 972507-972540, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

39. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1215379-1215412, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaatgaaattctacaggcaatgcaagttgggg	Protospacer
***** *************.**************

40. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1222643-1222676, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

41. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 247224-247257, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacagacaatgcaagttgggg	Protospacer
******************..**************

42. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 694247-694280, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

43. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 1898522-1898555, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

44. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 2303965-2303998, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacagacaatgcaagttgggg	Protospacer
******************..**************

45. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to position: 2465518-2465551, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

46. spacer 5.1|998737|32|NZ_CP047835|CRISPRCasFinder matches to position: 898189-898220, mismatch: 2, identity: 0.938

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcaaaaagaaattctacagacaa	Protospacer
***********.****************.***

47. spacer 6.1|1117981|33|NZ_CP047835|CRISPRCasFinder matches to position: 121205-121237, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacgttattgtaagctgactttcca	Protospacer
***********..********************

48. spacer 6.1|1117981|33|NZ_CP047835|CRISPRCasFinder matches to position: 1166674-1166706, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

49. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to position: 2499719-2499745, mismatch: 2, identity: 0.926

cggggccccaacacagaagctggcgga	CRISPR spacer
cggggccccaacacagaagctgacaga	Protospacer
**********************.*.**

50. spacer 9.1|1873354|33|NZ_CP047835|CRISPRCasFinder matches to position: 998783-998815, mismatch: 2, identity: 0.939

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attggaaatccaattcctctttgttggggccca	Protospacer
*****.*********.*****************

51. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 423290-423320, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggcaatccaatttctctatgttggggcc	Protospacer
***** ************** **********

52. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 998785-998815, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggaaatccaattcctctttgttggggcc	Protospacer
*****.*********.***************

53. spacer 10.1|2303930|31|NZ_CP047835|CRISPRCasFinder matches to position: 1222564-1222594, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggaaatccaatttctctgtgttggggcc	Protospacer
*****.************** **********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715510-715536 5 0.815
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333734-333760 6 0.778
NZ_CP047835_7 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder 1166707-1166733 27 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3358-3384 6 0.778
NZ_CP047835_1 1.1|390798|34|NZ_CP047835|CRISPRCasFinder 390798-390831 34 LC371242 Escherichia phage EcS1 DNA, complete sequence 15447-15480 8 0.765
NZ_CP047835_11 11.1|2610065|34|NZ_CP047835|CRISPRCasFinder 2610065-2610098 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP047835_11 11.1|2610065|34|NZ_CP047835|CRISPRCasFinder 2610065-2610098 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
NZ_CP047835_3 3.1|898075|30|NZ_CP047835|CRISPRCasFinder 898075-898104 30 KT588075 Acinetobacter phage Ab105-2phi, complete genome 13350-13379 9 0.7
NZ_CP047835_3 3.1|898075|30|NZ_CP047835|CRISPRCasFinder 898075-898104 30 MT349887 Acinetobacter phage 5W, complete genome 37720-37749 9 0.7
NZ_CP047835_2 2.1|423253|34|NZ_CP047835|CRISPRCasFinder 423253-423286 34 NZ_CP009619 Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence 270864-270897 10 0.706

1. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

cggggccccaacacagaagctggcgga	CRISPR spacer
tcagggccaaacacagaagctggcgga	Protospacer
. .** ** ******************

2. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 6, identity: 0.778

cggggccccaacacagaagctggcgga	CRISPR spacer
taaggcctcaacacagaagctggcgtc	Protospacer
...****.*****************  

3. spacer 7.1|1166707|27|NZ_CP047835|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.778

cggggccccaacacagaagctggcgga	CRISPR spacer
gtaggcccagacacagaagctggcggt	Protospacer
  .***** .**************** 

4. spacer 1.1|390798|34|NZ_CP047835|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 8, identity: 0.765

acggggccccaacatagagaatttcgtaaagaaa	CRISPR spacer
attcgtcgtcaacaaaaagaatttcgtaaagaaa	Protospacer
*.  * * .***** *.*****************

5. spacer 11.1|2610065|34|NZ_CP047835|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

6. spacer 11.1|2610065|34|NZ_CP047835|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

7. spacer 3.1|898075|30|NZ_CP047835|CRISPRCasFinder matches to KT588075 (Acinetobacter phage Ab105-2phi, complete genome) position: , mismatch: 9, identity: 0.7

ttgtctgtagaaattgagaatccaatttca	CRISPR spacer
gaaaaggtagcaattgagaatccaattgga	Protospacer
  .   **** ****************  *

8. spacer 3.1|898075|30|NZ_CP047835|CRISPRCasFinder matches to MT349887 (Acinetobacter phage 5W, complete genome) position: , mismatch: 9, identity: 0.7

ttgtctgtagaaattgagaatccaatttca	CRISPR spacer
gaaaaggtagcaattgagaatccaattgga	Protospacer
  .   **** ****************  *

9. spacer 2.1|423253|34|NZ_CP047835|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 10, identity: 0.706

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
aaaaaagaaatgctacaggtaatgcagcacttag	Protospacer
 .********* **************.  .  .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 24769 29 Staphylococcus_phage(100.0%) portal,protease,terminase,tail,holin,head,capsid NA
DBSCAN-SWA_2 155447 : 242204 84 Staphylococcus_phage(93.33%) protease,tRNA,transposase NA
DBSCAN-SWA_3 366525 : 375568 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 443402 : 451714 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_5 988868 : 997341 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1017315 : 1050623 36 Enterococcus_phage(16.67%) transposase,protease,bacteriocin NA
DBSCAN-SWA_7 1193558 : 1205734 13 Staphylococcus_phage(50.0%) capsid,integrase attL 1188887:1188901|attR 1202426:1202440
DBSCAN-SWA_8 1256501 : 1270788 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_9 1282759 : 1290579 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_10 2753970 : 2774420 42 Staphylococcus_phage(100.0%) terminase,integrase attL 2742550:2742566|attR 2765352:2765368
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage