CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	10 crisprs	csa3,cas3,DinG,DEDDh,WYL	4	1	212	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047788_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_1

71372-71563

Orphan

Consensus_repeat	Method
GGTGGGGCCCNCAACANAGANN	CRT

3 spacers

DEDDh

The CRISPR arrays of NZ_CP047788_1

>merge|NZ_CP047788|1|71372-71563|CRT
AGTGGGGCCCCAACAAAGAAGCTGACTTTCTGTCAGCTTACAATAATGTGCAAGTTAGGGTGGGGCCCCAACAAAGAGAATTTCGAAAGGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGACTTTCTGTCAGCTTACAATAATGTGCAAGTTGGGGTGGGGCCCCAAACATAGAG

>NZ_CP047788|1|1|71372-71563|CRT
AGTGGGGCCCCAACAAAGAAG	CTGACTTTCTGTCAGCTTACAATAATGTGCAAGTTAG
GGTGGGGCCCCAACAAAGAGA	ATTTCGAAAGGAAATTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGAAG	CTGACTTTCTGTCAGCTTACAATAATGTGCAAGTTGG
GGTGGGGCCCCAAACATAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000831695.1\|64487_65687_+\|CamS-family-sex-pheromone-protein	unknown	unknown	gnl\|CDD\|227188
NZ_CP047788.1\|WP_000140179.1\|75040_76111_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP047788.1\|WP_001791535.1\|70920_71067_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_001250339.1\|77914_79228_+\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_CP047788.1\|WP_000170162.1\|67680_67983_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP047788.1\|WP_001165363.1\|59101_59404_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226893
NZ_CP047788.1\|WP_001147874.1\|72732_74094_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP047788.1\|WP_000992924.1\|60275_62468_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_CP047788.1\|WP_000544973.1\|79229_79961_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP047788.1\|WP_000613738.1\|76177_76732_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP047788.1\|WP_000272063.1\|59586_60279_+\|heptaprenylglyceryl-phosphate-synthase	unknown	unknown	gnl\|CDD\|224560
NZ_CP047788.1\|WP_000027924.1\|67984_69442_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NZ_CP047788.1\|WP_000548777.1\|74263_74794_+\|DUF3267-domain-containing-protein	unknown	unknown	gnl\|CDD\|378690
NZ_CP047788.1\|WP_001790257.1\|80046_80157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000545373.1\|69454_70882_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_CP047788.1\|WP_001790679.1\|76948_77041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000957023.1\|65775_67314_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP047788.1\|WP_000949466.1\|77122_77623_-\|H-type-ferritin-FtnA	unknown	unknown	gnl\|CDD\|224445
NZ_CP047788.1\|WP_000774552.1\|62471_64475_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP047788.1\|WP_001231458.1\|71704_72652_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000831695.1\|64487_65687_+\|CamS-family-sex-pheromone-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	0
NZ_CP047788.1\|WP_000140179.1\|75040_76111_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP047788.1\|WP_001250339.1\|77914_79228_+\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.60835e-98
NZ_CP047788.1\|WP_000170162.1\|67680_67983_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	5.296e-34
NZ_CP047788.1\|WP_001165363.1\|59101_59404_+\|hypothetical-protein	gnl\|CDD\|226893	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown].	1.66593e-59
NZ_CP047788.1\|WP_001147874.1\|72732_74094_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
NZ_CP047788.1\|WP_000992924.1\|60275_62468_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047788.1\|WP_000544973.1\|79229_79961_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.79354e-120
NZ_CP047788.1\|WP_000613738.1\|76177_76732_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	4.39188e-75
NZ_CP047788.1\|WP_000272063.1\|59586_60279_+\|heptaprenylglyceryl-phosphate-synthase	gnl\|CDD\|224560	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only].	2.53994e-99
NZ_CP047788.1\|WP_000027924.1\|67984_69442_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NZ_CP047788.1\|WP_000548777.1\|74263_74794_+\|DUF3267-domain-containing-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.54005e-11
NZ_CP047788.1\|WP_000545373.1\|69454_70882_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_CP047788.1\|WP_000957023.1\|65775_67314_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP047788.1\|WP_000949466.1\|77122_77623_-\|H-type-ferritin-FtnA	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	1.15329e-74
NZ_CP047788.1\|WP_000774552.1\|62471_64475_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP047788.1\|WP_001231458.1\|71704_72652_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0

>NZ_CP047788.1|WP_001791535.1|70920_71067_+|hypothetical-protein
MVADLDAIEGLFISIEVILLLTLFIVHVNGKNINFINALALIILRQTV
>NZ_CP047788.1|WP_000545373.1|69454_70882_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKR
>NZ_CP047788.1|WP_000027924.1|67984_69442_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADANDSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDVYEKL
>NZ_CP047788.1|WP_000170162.1|67680_67983_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA
>NZ_CP047788.1|WP_000957023.1|65775_67314_-|sodium/proline-symporter-PutP
MLTMGTALSQQVDANWQTYIMIAVYFLILIVIGFYGYKQATGNLSEYMLGGRSIGPYITALSAGASDMSGWMIMGLPGSVYSTGLSAMWITIGLTLGAYINYFVVAPRLRVYTELAGDAITLPDFFKNRLNDKNNVLKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLDYHFGLILVAFIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMMNLNGWGTFHDVAAMKPTNLNLFKGLSFIGIISLFSWGLGYFGQPHIIVRFMSIKSHKMLPKARRLGISWMAVGLLGAVAVGLTGIAFVPAYHIKLEDPETLFIVMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLVRGEEKAKTHQKEFVMVGRLSVLAVAIVAIAIAWNPNDTILNLVGNAWAGFGASFSPLVLFALYWKGLTRAGAVSGMVSGALVVIVWIAWIKPLAHINEIFGLYEIIPGFIVSVIVTYVVSKLTKKPGAFVETDLNKVRDIVREK
>NZ_CP047788.1|WP_000831695.1|64487_65687_+|CamS-family-sex-pheromone-protein
MKRTLVLLITAIFILAACGNHKDDQAGKDNQKHNNSSNQVKEIATDKNVQGDNYRTLLPFKESQARGLLQDNMANSYNGGDFEDGLLNLSKEVFPTDKYLYQDGQFLDKKTINAYLNPKYTKREIDKMSEKDKKDKKANENLGLNPSHEGETDPEKIAEKSPAYLSNILEQDFYGGGDTKGKNIKGMTIGLAMNSVYYYKKEKDGPTFSKKLDDSEVKKQGKQMASEILSRLRENDDLKDIPIHFAIYKQSSEDSITPGEFITQATAEKSQTKLNEWHNINEKSALLPSSTAADYDENLNNNFKQFNDNLQSYFSNFTQAVGKVKFVDKKPQRLVVDLPIDYYGQAETIGITQYVTEQANKYFDKIDNYEIRIKDGNQPRALISKTKDDKEPQVHIYSN
>NZ_CP047788.1|WP_000774552.1|62471_64475_+|NAD-dependent-DNA-ligase-LigA
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEFKTVDSPTVRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVSDIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDRDIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVEIHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTGKLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVDKQNELNS
>NZ_CP047788.1|WP_000992924.1|60275_62468_+|DNA-helicase-PcrA
MNALLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSERKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQRNGKKYQDMAILYRTNAQSRVLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMFDALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENTLESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLENHSSGKRQTIQPKAKPFAKRGFSQRTTSTKKQVSSSDWNVGDKVMHKAWGEGMVSNVNEKNGSIELDIIFKSQGPKRLLAQFAPIEKKED
>NZ_CP047788.1|WP_000272063.1|59586_60279_+|heptaprenylglyceryl-phosphate-synthase
MYDIKKWRHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSRVRRYPLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHLYRLPVMYIEYSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIKESSK
>NZ_CP047788.1|WP_001165363.1|59101_59404_+|hypothetical-protein
MQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETNE
>NZ_CP047788.1|WP_001231458.1|71704_72652_+|diacylglycerol-kinase
MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>NZ_CP047788.1|WP_001147874.1|72732_74094_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMVIFVTNGKNWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>NZ_CP047788.1|WP_000548777.1|74263_74794_+|DUF3267-domain-containing-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSAGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>NZ_CP047788.1|WP_000140179.1|75040_76111_+|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSTRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>NZ_CP047788.1|WP_000613738.1|76177_76732_-|3'-5'-exonuclease
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>NZ_CP047788.1|WP_001790679.1|76948_77041_+|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>NZ_CP047788.1|WP_000949466.1|77122_77623_-|H-type-ferritin-FtnA
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEEAMFETHINYLTRIGDDSNALYLYEKELGTRTFDEE
>NZ_CP047788.1|WP_001250339.1|77914_79228_+|Mur-ligase-family-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNGDDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISRFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQAIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>NZ_CP047788.1|WP_000544973.1|79229_79961_+|type-1-glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHNFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEKQAKQVLIDRANRQKKSR
>NZ_CP047788.1|WP_001790257.1|80046_80157_+|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047788_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_2

380201-380280

Orphan

Consensus_repeat	Method
CCCAACATAGAGAATTTCGTAAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_2

>merge|NZ_CP047788|2|380201-380280|CRISPRCasFinder
CCCAACATAGAGAATTTCGTAAAGAATTTTAATAGGCAATGGAAGTTGGCGGGGCCCAACACAGAGAATTTCGTAAAGAA

>NZ_CP047788|2|1|380201-380280|CRISPRCasFinder
CCCAACATAGAGAATTTCGTAAAGAA	TTTTAATAGGCAATGGAAGTTGGCGGGG
CCCAACACAGAGAATTTCGTAAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000752909.1\|375702_375885_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047788.1\|WP_123097183.1\|376307_377321_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP047788.1\|WP_000134779.1\|387463_387772_+\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
NZ_CP047788.1\|WP_000044796.1\|370660_372427_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP047788.1\|WP_000682640.1\|372887_373661_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
NZ_CP047788.1\|WP_000704122.1\|375180_375603_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP047788.1\|WP_000426912.1\|386756_387017_+\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108
NZ_CP047788.1\|WP_000939059.1\|387020_387449_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|223886
NZ_CP047788.1\|WP_001791215.1\|372759_372888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000567025.1\|380573_381242_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP047788.1\|WP_000734077.1\|384063_386694_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP047788.1\|WP_000848304.1\|389632_390901_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP047788.1\|WP_000342267.1\|388056_388695_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP047788.1\|WP_000409167.1\|377630_378773_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP047788.1\|WP_160193858.1\|381243_383721_+\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NZ_CP047788.1\|WP_000648617.1\|390900_391524_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP047788.1\|WP_000137775.1\|388697_389621_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP047788.1\|WP_000102741.1\|373821_375096_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP047788.1\|WP_000008061.1\|375924_376071_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000066097.1\|378773_379892_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000752909.1\|375702_375885_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07
NZ_CP047788.1\|WP_123097183.1\|376307_377321_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	7.79436e-173
NZ_CP047788.1\|WP_000134779.1\|387463_387772_+\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	1.28539e-26
NZ_CP047788.1\|WP_000044796.1\|370660_372427_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP047788.1\|WP_000682640.1\|372887_373661_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.31184e-126
NZ_CP047788.1\|WP_000704122.1\|375180_375603_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
NZ_CP047788.1\|WP_000426912.1\|386756_387017_+\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	3.05024e-47
NZ_CP047788.1\|WP_000939059.1\|387020_387449_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
NZ_CP047788.1\|WP_000567025.1\|380573_381242_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.47006e-15
NZ_CP047788.1\|WP_000734077.1\|384063_386694_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP047788.1\|WP_000848304.1\|389632_390901_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
NZ_CP047788.1\|WP_000342267.1\|388056_388695_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	7.02938e-72
NZ_CP047788.1\|WP_000409167.1\|377630_378773_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
NZ_CP047788.1\|WP_160193858.1\|381243_383721_+\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP047788.1\|WP_000137775.1\|388697_389621_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87045e-104
NZ_CP047788.1\|WP_000102741.1\|373821_375096_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP047788.1\|WP_000648617.1\|390900_391524_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138
NZ_CP047788.1\|WP_000066097.1\|378773_379892_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0

>NZ_CP047788.1|WP_000066097.1|378773_379892_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>NZ_CP047788.1|WP_000409167.1|377630_378773_+|cysteine-desulfurase
MEIYADYAATTPVKPEVVDAMMTIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVETMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>NZ_CP047788.1|WP_123097183.1|376307_377321_-|LLM-class-flavin-dependent-oxidoreductase
MAIKYSALNLVPIREGEDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHELQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYSEVNEIMAISYIYDKDMQLDSYRRFKNVINQLNEKNTL
>NZ_CP047788.1|WP_000008061.1|375924_376071_+|hypothetical-protein
MSFIDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKENEDKEK
>NZ_CP047788.1|WP_000752909.1|375702_375885_+|CsbD-family-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>NZ_CP047788.1|WP_000704122.1|375180_375603_+|Rrf2-family-transcriptional-regulator
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>NZ_CP047788.1|WP_000102741.1|373821_375096_-|replication-associated-recombination-protein-A
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSERQLKEIYNNLLKQRP
>NZ_CP047788.1|WP_000682640.1|372887_373661_+|tRNA-threonylcarbamoyladenosine-dehydratase
MKHQFSRNELAIGHQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>NZ_CP047788.1|WP_001791215.1|372759_372888_+|hypothetical-protein
MGLIAFNNCFLVEFWKNNQSNNAKHKILSYYVLMYKSVKEVK
>NZ_CP047788.1|WP_000044796.1|370660_372427_+|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFEAENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH
>NZ_CP047788.1|WP_000567025.1|380573_381242_+|tetratricopeptide-repeat-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQESIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNENIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>NZ_CP047788.1|WP_160193858.1|381243_383721_+|ATP-dependent-RecD-like-DNA-helicase
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDSEAFDIGLRTNGQARLTQLCTLLKNYFNSEDEDMLENTATNDTGASQTTIDDQVEAPMSSNASEEVTSDSTKTDTNVLTEATMFKIDPMINMGEITPYDFIER
>NZ_CP047788.1|WP_000734077.1|384063_386694_+|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>NZ_CP047788.1|WP_000426912.1|386756_387017_+|IreB-family-regulatory-phosphoprotein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK
>NZ_CP047788.1|WP_000939059.1|387020_387449_+|Holliday-junction-resolvase-RuvX
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>NZ_CP047788.1|WP_000134779.1|387463_387772_+|DUF1292-domain-containing-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>NZ_CP047788.1|WP_000342267.1|388056_388695_+|O-methyltransferase
MDDLNKKYLIDLHQHQNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLVTHHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>NZ_CP047788.1|WP_000137775.1|388697_389621_+|U32-family-peptidase
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLMDPIEEIQPDHRPFDEGFLYKQTVY
>NZ_CP047788.1|WP_000848304.1|389632_390901_+|U32-family-peptidase
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>NZ_CP047788.1|WP_000648617.1|390900_391524_+|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ

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Crispr_ID: NZ_CP047788_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_3

884310-884402

Unclear

Consensus_repeat	Method
AGTTATCAATTTATTGATTACTGTTTCTTA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047788_3

>merge|NZ_CP047788|3|884310-884402|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTATGCATGAGCTTTAGCTCAGGCGTTCCGCTTATTAGTTATCAATTTATTGATTACTGTTTCTTA

>NZ_CP047788|3|2|884310-884402|CRISPRCasFinder
AGTTATCAATTTATTGATTACTGTTTCTTA	TGCATGAGCTTTAGCTCAGGCGTTCCGCTTATT
AGTTATCAATTTATTGATTACTGTTTCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000181404.1\|873873_874224_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP047788.1\|WP_000239746.1\|886171_887158_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP047788.1\|WP_000164332.1\|893871_894516_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP047788.1\|WP_000547905.1\|893223_893865_-\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|224480
NZ_CP047788.1\|WP_001151515.1\|887926_889987_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP047788.1\|WP_000687323.1\|874326_875064_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP047788.1\|WP_001261987.1\|875063_875567_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP047788.1\|WP_160193879.1\|876464_877832_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP047788.1\|WP_001548538.1\|887162_887735_-\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_CP047788.1\|WP_000531319.1\|877857_878190_-\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_CP047788.1\|WP_000517908.1\|892654_892843_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP047788.1\|WP_000623906.1\|890176_891823_-\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|224378
NZ_CP047788.1\|WP_000262717.1\|879426_882993_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_CP047788.1\|WP_000426914.1\|883986_884220_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP047788.1\|WP_000167269.1\|884525_885260_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_CP047788.1\|WP_000171418.1\|891837_892212_-\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_CP047788.1\|WP_000268754.1\|875754_876030_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_CP047788.1\|WP_000007675.1\|878176_879427_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP047788.1\|WP_000043237.1\|883139_883871_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_CP047788.1\|WP_000047355.1\|885252_886179_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000181404.1\|873873_874224_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.77895e-70
NZ_CP047788.1\|WP_000239746.1\|886171_887158_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.80762e-178
NZ_CP047788.1\|WP_000164332.1\|893871_894516_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	1.52718e-114
NZ_CP047788.1\|WP_000547905.1\|893223_893865_-\|thiamine-diphosphokinase	gnl\|CDD\|224480	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].	1.16343e-81
NZ_CP047788.1\|WP_001151515.1\|887926_889987_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP047788.1\|WP_000687323.1\|874326_875064_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	3.27017e-164
NZ_CP047788.1\|WP_001261987.1\|875063_875567_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.02289e-68
NZ_CP047788.1\|WP_160193879.1\|876464_877832_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP047788.1\|WP_001548538.1\|887162_887735_-\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	2.37773e-98
NZ_CP047788.1\|WP_000531319.1\|877857_878190_-\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	1.00966e-46
NZ_CP047788.1\|WP_000517908.1\|892654_892843_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_CP047788.1\|WP_000623906.1\|890176_891823_-\|DAK2-domain-containing-protein	gnl\|CDD\|224378	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only].	0
NZ_CP047788.1\|WP_000262717.1\|879426_882993_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_CP047788.1\|WP_000426914.1\|883986_884220_-\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.23888e-31
NZ_CP047788.1\|WP_000167269.1\|884525_885260_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	3.68137e-140
NZ_CP047788.1\|WP_000171418.1\|891837_892212_-\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	4.1554e-37
NZ_CP047788.1\|WP_000268754.1\|875754_876030_-\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	3.01687e-41
NZ_CP047788.1\|WP_000007675.1\|878176_879427_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP047788.1\|WP_000043237.1\|883139_883871_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	4.78039e-115
NZ_CP047788.1\|WP_000047355.1\|885252_886179_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	6.35101e-134

>NZ_CP047788.1|WP_000426914.1|883986_884220_-|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLEK
>NZ_CP047788.1|WP_000043237.1|883139_883871_-|ribonuclease-III
MSKQKKSEIVNRFRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSRYLFDKHPNLPEGNLTKMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLISDAFEAFIGALYLDQGLDIVWKFAEKVIFPHVEQNELLGVVDFKTQFQEYVHQQNKGDVTYNLIKEEGPAHHRLFTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQIK
>NZ_CP047788.1|WP_000262717.1|879426_882993_-|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRARLKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIEESAGVLKYKKRKAESLNKLDQTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYKTLSHQMKHSDIVVTVNDIDQYTNDNRQLDQRLNDLQGQQANKEADKQRLSQQIQQYKGKRHQLDNDVESLNYQLVKATEAFEKYTGQLNVLVERKKNQSETNARYEEEQENLIELLENISSEISEAQDTYKSLKSKQKELNAVIRELEEQLYVSDEAHDEKLEEIKNEYYTLMSEQSDVNNDIRFLKHTIEENEVKKSRLDSRLVEVFEQLKDIQGQIKTTKKEYQQTNKELSAVDKEIKNIEKDLTDTKKAQNEYEEKLYQAYRYTEKMKTRIDSLATQEEEYTYFFNGVKHILKAKNKELKGIHGAVAEIIDVPSKLTQAIETALGASLQHVIVDSEKDGRQAIQFLKERNLGRATFLPLNVIQSRAVATDIKSIAKEANGFISIASEAVKVAPEYQNIIGNLLGNTIIVDHLKHANELARAIKYRTRIVTLEGDIVNPGGSMTGGGARKSKSILSQKDELTTMRHQLEDYLRQTESFEQQFKELKIKSDQLSELYFEKSQKHNTLKEQVHHFEMELDRLTTQETQIKNDHEEFEFEKNDGYTSDKSRQTLSEKETHLESIKASLKRLEDEIERYTKLSKEGKESLTKTQQTLHQKQSDLAVVKERIKTQQQTIDRLNNQSQQTKHQLNDVKEKIAFFNSDEVMGEQAFQNIKDQINGQQETRTRLSDELDKLKQQRIELNEQIDAQEATLQVCHQDILAIENHYQDIKAEQSKLDVLIHHAIDHLNDEYQLTVERAKSEYTSDESIDALRKKVKLMKMSIDELGPVNLNAIEQFEELNERYTFLSEQRTDLRKAKETLEQIISEMDQEVTERFKETFHAIQGHFTAMFKQLFGGGDAELQLTEADYLTAGIDIVVQPPGKKLQHLSLLSGGERALTAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAKYLNELSDETQFIVITHRKGTMEFADRLYGVTMQESGVTKLVSVNLNTIDDVLKEEQ
>NZ_CP047788.1|WP_000007675.1|878176_879427_-|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFATNKENDEVKSLTEEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLISRYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNLEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNEEITTVENDQIVTEEKDDNHGAK
>NZ_CP047788.1|WP_000531319.1|877857_878190_-|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQKFEQRREIYDEMKKHLSNPEQIQRYIQQLEDLE
>NZ_CP047788.1|WP_160193879.1|876464_877832_-|signal-recognition-particle-protein
MAFEGLSERLQATMQKMRGKGKLTEADIKIMMREVRLALLEADVNFKVVKEFIKTVSERALGSDVMQSLTPGQQVIKIVQDELTKLMGGENTSINMSNKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQIDIPVYSEGDQVKPQQIVTNALKHAKEEHLDFVIIDTAGRLHIDEALMNELKEVKDIAKPNEIMLVVDSMTGQDAVNVAESFDDQLDVTGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDRVKNLGPLDDIMKMIPGMNKMKGLDKLNMSEKQIDHIKAIIQSMTPAERNNPDTLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKGKRNQMQNMLKGMNLPF
>NZ_CP047788.1|WP_000268754.1|875754_876030_-|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPTSANAPEIKVDEALALKWLNDGAKPTDTVHNILSKEGIMKKFDEQKKAK
>NZ_CP047788.1|WP_001261987.1|875063_875567_-|ribosome-maturation-factor-RimM
MRVEVGQIVNTHGIKGEIKVKSNSDFTDVRFQPGQVLTVVHNNNDLEYTVKSHRVHKGLHMLTFEGINNINDIEHLKGSSIYQERDHEDIVLEENEFYYSDIIGCTVFDDQETPIGRVINIFETGANDVWVIKGSKEYLIPYIADVVKEVDVENKKIIITPMEGLLD
>NZ_CP047788.1|WP_000687323.1|874326_875064_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
>NZ_CP047788.1|WP_000181404.1|873873_874224_-|50S-ribosomal-protein-L19
MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_CP047788.1|WP_000167269.1|884525_885260_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_CP047788.1|WP_000047355.1|885252_886179_-|ACP-S-malonyltransferase
MSKTAIIFPGQGAQKVGMAQDLYNNNDQATEILTSAANTLDFDILETMFTDEEGKLGETENTQPALLTHSSALLAALKNLNPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQAFPSGVGSMAAVLGLDFDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSYINQFEWRDAKFPVVQNVNAQGETDKEVIKSNMVKQLYSPVQFINSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKLTSIQTLEDVKGWNEND
>NZ_CP047788.1|WP_000239746.1|886171_887158_-|phosphate-acyltransferase-PlsX
MVKLAIDMMGGDNAPDIVLEAVQKAVEDFKDLEIILFGDEKKYNLNHERIEFRHCSEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLDVGANADAKPEHLLQYAQLGDIYAQKIRGIDNPKISLLNIGTEPAKGNSLTKKSYELLNQDHSLNFVGNIEAKTLMDGDTDVVVTDGYTGNMVLKNLEGTAKSIGKMLKDTIMSSTKNKIAGAILKKDLAEFAKKMDYSEYGGSVLLGLEGTVVKAHGSSNAKAFYSAIRQAKIAGEQNIVQTMKETVGESNE
>NZ_CP047788.1|WP_001548538.1|887162_887735_-|transcription-factor-FapR
MRGETLKLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALIKQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKRG
>NZ_CP047788.1|WP_001151515.1|887926_889987_-|ATP-dependent-DNA-helicase-RecG
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFLNSQGTQTQENADVQLEPVYRIKEGIKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKSSDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIALFGDSMNVALLTGSVKGKKRKILLEQLENRTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD
>NZ_CP047788.1|WP_000623906.1|890176_891823_-|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTMTSGREEVENNLSKNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIESESEINSKLLAESFQAGVETAYKAVMKPVEGTILTVAKDAAQAAIEKANNTEDCIELMEYIIVKANESLENTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKALKGEKVEAKVAKLDKDEFVHDEHDFHGVINTEDIIYGYCTEMMVRFGKNKKAFDEQEFRQDMSQFGDSLLVINDEEIVKVHVHTEYPGKVFNYGQQYGELIKLKVENMREQHREVIRKEQHTAKPKMETVETAIITISMGEGISEIFKSMGATHIISGGQTMNPSTEDIVKVIEQSKCKRAIILPNNKNILMASEQAASIVDAEAVVIPTKSIPQGISALFQYDVDATLEENKAQMADSVNNVKSGSLTYAVRDTKIDGVEIKKDAFMGLIEDKIVSSQSDQLTTVTELLNEMLADDSEILTVIIGQDAEQAVTDNMINWIEEQYPDVEVEVHEGGQPIYQYFFSVE
>NZ_CP047788.1|WP_000171418.1|891837_892212_-|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNEVIASVVGGKAVECYGIVGMASRQQVRDGIAEILGHENYAKGIKVTENNGVVDIDMYIIVSYGVKISEVANNVQSTVKYTLEKSLNVSVNSINIYVQGVRVNNTGKKA
>NZ_CP047788.1|WP_000517908.1|892654_892843_+|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_CP047788.1|WP_000547905.1|893223_893865_-|thiamine-diphosphokinase
MHINLLCSDRHLPQDIWAKSNEGKWGGVDRGALILLKHQIIPFFSVGDFDSVSKEERQLLTEQLQIKPVQAEKADTDLALAVDKAVALGFDSITIYGATGGRLDHFFGAIQLLLKKAYYKHDVHIEVIDQQNKIELLPKGQHTVEKDKSYPYISFIPMTDDVELSLAGFKYNLARQMLNIGSTLTISNEIESLQAKVTVHDGLILQIRSTDLN
>NZ_CP047788.1|WP_000164332.1|893871_894516_-|ribulose-phosphate-3-epimerase
MTKLYPSLLSVDFLDLQHELKRLEEAGVDGVHFDVMDGQFVPNISIGLPILDAVRKGTTLPIDVHLMIENPEKYIASFAEHGADMISIHVESTPHIHRAIQMIKHLDKKAGVVINPGTPISQIEPILDIVDYVLVMTVNPGFGGQSFIDQCVEKIAGLNAIKMERQLNFDIEVDGGVNTDTAKVCVENGATMLVTGSFFFKQEDYKKVTQALKG

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Crispr_ID: NZ_CP047788_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_4

1234621-1234700

Orphan

Consensus_repeat	Method
GGGCCCCAACATAGAAGCTGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_4

>merge|NZ_CP047788|4|1234621-1234700|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGACGGAAAGTCAGCTTACAAGCAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGG

>NZ_CP047788|4|3|1234621-1234700|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGACGG	AAAGTCAGCTTACAAGCAATGCAAGTTGGGGT
GGGCCCCAACACAGAAGCTGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_001065804.1\|1233687_1233984_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047788.1\|WP_001018965.1\|1233976_1234363_-\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_CP047788.1\|WP_000255545.1\|1240474_1241092_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP047788.1\|WP_001147955.1\|1237047_1237368_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047788.1\|WP_000589549.1\|1236547_1236904_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP047788.1\|WP_000150036.1\|1238139_1238856_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_CP047788.1\|WP_000974455.1\|1239003_1239426_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP047788.1\|WP_000807671.1\|1224941_1226183_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047788.1\|WP_000290491.1\|1236009_1236390_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047788.1\|WP_000422908.1\|1237517_1238057_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP047788.1\|WP_000569884.1\|1239824_1240319_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NZ_CP047788.1\|WP_000732338.1\|1230885_1231707_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP047788.1\|WP_000571209.1\|1232412_1233438_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP047788.1\|WP_001798062.1\|1234953_1235832_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
NZ_CP047788.1\|WP_001183862.1\|1228791_1229643_+\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP047788.1\|WP_000752917.1\|1229876_1230071_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047788.1\|WP_016187137.1\|1241164_1241725_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP047788.1\|WP_000520233.1\|1231724_1232420_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP047788.1\|WP_000205572.1\|1226297_1227605_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047788.1\|WP_160193890.1\|1227702_1228464_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_001065804.1\|1233687_1233984_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.8621e-13
NZ_CP047788.1\|WP_001018965.1\|1233976_1234363_-\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	1.24029e-35
NZ_CP047788.1\|WP_000255545.1\|1240474_1241092_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	5.25608e-61
NZ_CP047788.1\|WP_001147955.1\|1237047_1237368_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.63533e-24
NZ_CP047788.1\|WP_000589549.1\|1236547_1236904_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_CP047788.1\|WP_000150036.1\|1238139_1238856_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	6.29269e-147
NZ_CP047788.1\|WP_000974455.1\|1239003_1239426_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.40241e-61
NZ_CP047788.1\|WP_000807671.1\|1224941_1226183_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047788.1\|WP_000290491.1\|1236009_1236390_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
NZ_CP047788.1\|WP_000422908.1\|1237517_1238057_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
NZ_CP047788.1\|WP_000569884.1\|1239824_1240319_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
NZ_CP047788.1\|WP_000732338.1\|1230885_1231707_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.3847e-113
NZ_CP047788.1\|WP_000571209.1\|1232412_1233438_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.26346e-169
NZ_CP047788.1\|WP_001798062.1\|1234953_1235832_-\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.81941e-75
NZ_CP047788.1\|WP_001183862.1\|1228791_1229643_+\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	1.10175e-76
NZ_CP047788.1\|WP_000752917.1\|1229876_1230071_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
NZ_CP047788.1\|WP_016187137.1\|1241164_1241725_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.24579e-44
NZ_CP047788.1\|WP_000520233.1\|1231724_1232420_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_CP047788.1\|WP_000205572.1\|1226297_1227605_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
NZ_CP047788.1\|WP_160193890.1\|1227702_1228464_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.10844e-149

>NZ_CP047788.1|WP_001018965.1|1233976_1234363_-|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSNDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPFLPNINNERLVLVNE
>NZ_CP047788.1|WP_001065804.1|1233687_1233984_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIYGYTPTCGTCKVSERMLDITNEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFQSVTDLLENLK
>NZ_CP047788.1|WP_000571209.1|1232412_1233438_-|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIILITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHAVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSIDFGKFEKELIERQVKMEVLRHG
>NZ_CP047788.1|WP_000520233.1|1231724_1232420_-|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_CP047788.1|WP_000732338.1|1230885_1231707_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGNVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_CP047788.1|WP_000752917.1|1229876_1230071_-|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>NZ_CP047788.1|WP_001183862.1|1228791_1229643_+|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNSDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_CP047788.1|WP_160193890.1|1227702_1228464_-|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHSSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_CP047788.1|WP_000205572.1|1226297_1227605_-|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_CP047788.1|WP_000807671.1|1224941_1226183_-|cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF
>NZ_CP047788.1|WP_001798062.1|1234953_1235832_-|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLKDIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDDLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_CP047788.1|WP_000290491.1|1236009_1236390_-|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>NZ_CP047788.1|WP_000589549.1|1236547_1236904_-|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_CP047788.1|WP_001147955.1|1237047_1237368_+|thioredoxin-family-protein
MQAIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_CP047788.1|WP_000422908.1|1237517_1238057_-|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_CP047788.1|WP_000150036.1|1238139_1238856_-|type-I-3-dehydroquinate-dehydratase
MTHVEVVATITPQLYIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>NZ_CP047788.1|WP_000974455.1|1239003_1239426_+|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NZ_CP047788.1|WP_000569884.1|1239824_1240319_+|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_CP047788.1|WP_000255545.1|1240474_1241092_+|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLFIIIAVVGVSIIIMSLPILQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>NZ_CP047788.1|WP_016187137.1|1241164_1241725_-|histidine-phosphatase-family-protein
MRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGLFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEDRIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL

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Crispr_ID: NZ_CP047788_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_5

1293021-1293105

Unclear

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047788_5

>merge|NZ_CP047788|5|1293021-1293105|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>NZ_CP047788|5|4|1293021-1293105|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000538141.1\|1290848_1291499_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_CP047788.1\|WP_000958224.1\|1283964_1284897_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP047788.1\|WP_000638419.1\|1290615_1290852_-\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP047788.1\|WP_000057557.1\|1281176_1282616_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
NZ_CP047788.1\|WP_000460983.1\|1303584_1304655_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP047788.1\|WP_000192947.1\|1301406_1302048_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP047788.1\|WP_000506536.1\|1294705_1297237_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP047788.1\|WP_000370984.1\|1298950_1300033_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
NZ_CP047788.1\|WP_000617735.1\|1297650_1298223_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP047788.1\|WP_001057973.1\|1298283_1298958_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP047788.1\|WP_000662687.1\|1285507_1288354_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP047788.1\|WP_001224791.1\|1282623_1283109_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP047788.1\|WP_001791369.1\|1294565_1294664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000749385.1\|1291672_1292512_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP047788.1\|WP_000686342.1\|1300396_1301263_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP047788.1\|WP_000134960.1\|1280174_1281110_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP047788.1\|WP_000258151.1\|1302211_1303267_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP047788.1\|WP_000508984.1\|1283116_1283959_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP047788.1\|WP_000229253.1\|1288361_1290347_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP047788.1\|WP_098827697.1\|1293280_1294391_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000538141.1\|1290848_1291499_-\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NZ_CP047788.1\|WP_000958224.1\|1283964_1284897_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP047788.1\|WP_000638419.1\|1290615_1290852_-\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP047788.1\|WP_000057557.1\|1281176_1282616_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	7.77476e-06
NZ_CP047788.1\|WP_000460983.1\|1303584_1304655_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.2404e-45
NZ_CP047788.1\|WP_000192947.1\|1301406_1302048_+\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	7.46066e-72
NZ_CP047788.1\|WP_000506536.1\|1294705_1297237_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP047788.1\|WP_000370984.1\|1298950_1300033_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.30855e-179
NZ_CP047788.1\|WP_000617735.1\|1297650_1298223_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
NZ_CP047788.1\|WP_001057973.1\|1298283_1298958_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.20522e-50
NZ_CP047788.1\|WP_000662687.1\|1285507_1288354_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP047788.1\|WP_001224791.1\|1282623_1283109_-\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	7.57447e-30
NZ_CP047788.1\|WP_000749385.1\|1291672_1292512_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	3.29354e-42
NZ_CP047788.1\|WP_000686342.1\|1300396_1301263_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17692e-120
NZ_CP047788.1\|WP_000134960.1\|1280174_1281110_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	5.52692e-153
NZ_CP047788.1\|WP_000258151.1\|1302211_1303267_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	2.69988e-87
NZ_CP047788.1\|WP_000508984.1\|1283116_1283959_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	6.12313e-120
NZ_CP047788.1\|WP_000229253.1\|1288361_1290347_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP047788.1\|WP_098827697.1\|1293280_1294391_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0

>NZ_CP047788.1|WP_000749385.1|1291672_1292512_-|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKKVVQQPVQQASKKVVVKQAPKQTVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP047788.1|WP_000538141.1|1290848_1291499_-|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_CP047788.1|WP_000638419.1|1290615_1290852_-|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP047788.1|WP_000229253.1|1288361_1290347_-|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP047788.1|WP_000662687.1|1285507_1288354_-|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_CP047788.1|WP_000958224.1|1283964_1284897_-|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP047788.1|WP_000508984.1|1283116_1283959_-|prolipoprotein-diacylglyceryl-transferase
MGGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTRKVK
>NZ_CP047788.1|WP_001224791.1|1282623_1283109_-|acetyltransferase
MRKFLSKEYHRTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQILNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP047788.1|WP_000057557.1|1281176_1282616_-|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLKEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP047788.1|WP_000134960.1|1280174_1281110_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSAPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP047788.1|WP_098827697.1|1293280_1294391_-|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NZ_CP047788.1|WP_001791369.1|1294565_1294664_-|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSLKK
>NZ_CP047788.1|WP_000506536.1|1294705_1297237_-|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKSVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NZ_CP047788.1|WP_000617735.1|1297650_1298223_-|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>NZ_CP047788.1|WP_001057973.1|1298283_1298958_-|ComF-family-protein
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKYLDQNEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFSKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>NZ_CP047788.1|WP_000370984.1|1298950_1300033_-|DEAD/DEAH-box-helicase
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE
>NZ_CP047788.1|WP_000686342.1|1300396_1301263_-|DegV-family-protein
MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQGYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYLIVDDLKNLQKSGRITGAQAWVGTLLKMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALYKKLQDDCPSAYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT
>NZ_CP047788.1|WP_000192947.1|1301406_1302048_+|YigZ-family-protein
MTQNIITVKKEHIIENVISKSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPEMNIQKANDDGEPTGTAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLIRAYSGAVRDVIYDIGRVELREAVPCIVTLNYDQTGKFEYELASTHFMLRNQTYTDKVSYYIDVVKSDYEAFINFLNQMTAGNFDLTEETPKQLPFDIPTE
>NZ_CP047788.1|WP_000258151.1|1302211_1303267_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MVTLLLVAVTMIVSLTITPIVIAISKRLNLVDKPNFRKVHTKPISVMGGTVILFSFLIGIWIGHPIETEIKPLIIGAIIMYVLGLVDDIYDLKPYIKLAGQIAAALVVAFYGVTIDFISLPMGTTIHFGFLSIPITVIWIVAITNAINLIDGLDGLASGVSAIGLITIGFIAILQANIFITMICCVLLGSLIGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITIIALFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSISILFSLSSIILYVSPPLGVVLMFVLIIFSIELIVEFTGLIDNNYRPILNLISRKSSHKEE
>NZ_CP047788.1|WP_000460983.1|1303584_1304655_+|GGDEF-domain-containing-protein
MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYLIHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLKQNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSLVNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHKSGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFHLPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL

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Crispr_ID: NZ_CP047788_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_6

2318957-2319215

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR
GCCAACACCACCGACACCAGAGGTACCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047788_6

>merge|NZ_CP047788|6|2318957-2319215|PILER-CR,CRISPRCasFinder
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTCGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGCGGTCAAAACGAAGGTCAACAAACGATTGAAGAAGATACAACGCCGCCAACACCACCGACACCAGAGGTACCAAGTGAGCCAGGCACACCAACACCGCCAACGCCAGAAGTGCCAAGTGAGCCAGGTAAGCCAACACCACCAACACCAGAGGTACCAGCTGAACCT

>NZ_CP047788|6|1|2318957-2319090|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGCGGTCAAAACGAAGGTCAACAAAC
GATTGAAGAAGATACAA

>NZ_CP047788|6|5|2319086-2319215|CRISPRCasFinder
TACAACGCCGCCAACACCACCGACACCA	GAGGTACCAAGTGAGCCAGGCAC
ACCAACACCGCCAACGCCAGAAGTGCCA	AGTGAGCCAGGTAAGCCAACACC
ACCAACACCAGAGGTACCAGCTGAACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000678764.1\|2321100_2321367_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000755954.1\|2323575_2323968_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP047788.1\|WP_000990133.1\|2312377_2313058_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP047788.1\|WP_001224379.1\|2330245_2330437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000616191.1\|2328890_2329685_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP047788.1\|WP_160193938.1\|2323969_2326831_+\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP047788.1\|WP_000481410.1\|2314752_2316111_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP047788.1\|WP_000586376.1\|2307993_2309817_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP047788.1\|WP_001117052.1\|2309955_2310372_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|227213
NZ_CP047788.1\|WP_000660709.1\|2306239_2307517_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP047788.1\|WP_160193936.1\|2316243_2316444_+\|fibronectin-binding-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_160193934.1\|2313082_2314636_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP047788.1\|WP_031788452.1\|2329688_2329811_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_001793883.1\|2327137_2327911_+\|tandem-type-lipoprotein	unknown	unknown	gnl\|CDD\|367972
NZ_CP047788.1\|WP_001793882.1\|2321650_2323459_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP047788.1\|WP_000721330.1\|2319655_2320522_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP047788.1\|WP_000074001.1\|2311459_2312191_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP047788.1\|WP_000435044.1\|2305077_2305689_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP047788.1\|WP_001573690.1\|2320648_2320957_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000289134.1\|2310602_2311295_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000755954.1\|2323575_2323968_+\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	7.19499e-57
NZ_CP047788.1\|WP_000990133.1\|2312377_2313058_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.91306e-44
NZ_CP047788.1\|WP_000616191.1\|2328890_2329685_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	6.75373e-133
NZ_CP047788.1\|WP_000481410.1\|2314752_2316111_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.37527e-168
NZ_CP047788.1\|WP_000586376.1\|2307993_2309817_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.39161e-83
NZ_CP047788.1\|WP_001117052.1\|2309955_2310372_+\|DUF2188-domain-containing-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	1.47696e-62
NZ_CP047788.1\|WP_000660709.1\|2306239_2307517_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.24287e-91
NZ_CP047788.1\|WP_000435044.1\|2305077_2305689_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	7.26208e-43
NZ_CP047788.1\|WP_160193934.1\|2313082_2314636_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP047788.1\|WP_001793883.1\|2327137_2327911_+\|tandem-type-lipoprotein	gnl\|CDD\|367972	pfam04507, DUF576, Csa1 family. This family contains several uncharacterized staphylococcal proteins. These proteins have been called conserved staphylococcal antigens (Csa).	1.78568e-131
NZ_CP047788.1\|WP_000721330.1\|2319655_2320522_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	3.60158e-176
NZ_CP047788.1\|WP_000074001.1\|2311459_2312191_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	3.55774e-33
NZ_CP047788.1\|WP_001793882.1\|2321650_2323459_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP047788.1\|WP_160193938.1\|2323969_2326831_+\|DUF3427-domain-containing-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	9.58017e-91
NZ_CP047788.1\|WP_000289134.1\|2310602_2311295_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	5.59791e-85

>NZ_CP047788.1|WP_160193936.1|2316243_2316444_+|fibronectin-binding-protein
MKGVSRHVFVRIVQAIIMKRLVCYFKLDNDEFNLKNKYKKYKPCVTRVSDDLDTIYKYISNNKIIN
>NZ_CP047788.1|WP_000481410.1|2314752_2316111_+|gluconate-permease
MFNEIWPLISVVLGIIILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVLFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV
>NZ_CP047788.1|WP_160193934.1|2313082_2314636_+|gluconokinase
MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSEENPDELFDAVLMTIKYIMRESKVNQDDIKFVSFSAQMHSLIAMDQQHQRLTNNITWADNRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLAKIFWMKHEWQDVFQRTAKFADIKTYIFYHLFDRYIIDYSMASATGMFNLETLDWDVGALELLGISEEMLPELVPTTYVMKGMKERYATLMGLNEDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIAKRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHRIRAALEGVLYNLYTVYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGLKAVGDIEDFSIVSSMVGATNNHTPIEENVAVYQELVSIFINLSRSLTENYEQIADFQRKHMAENKTQ
>NZ_CP047788.1|WP_000990133.1|2312377_2313058_+|GntR-family-transcriptional-regulator
MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
>NZ_CP047788.1|WP_000074001.1|2311459_2312191_+|MerR-family-transcriptional-regulator
MSNYSTGELAKLCNVTTRTIQYYDRKGILKPQGFTEGKRRVYTEQQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLDKIKNVQYYVNEASTSPITHLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSILSSILMKNKWPFLIALPFMIGYGIGITIYYQRKVAYLCPNCQHIFSPSLWAVIKAKHTATTRRFECPNCHETHYCIEVPKTHMGTE
>NZ_CP047788.1|WP_000289134.1|2310602_2311295_+|GTP-pyrophosphokinase-family-protein
MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNKAETEKYRDLLKECATEITEVENKLQQIHSEITE
>NZ_CP047788.1|WP_001117052.1|2309955_2310372_+|DUF2188-domain-containing-protein
MPFTMKGYPEKWKEFEVIKRQKAIEIANAMLKEGYLEKDVVPIAAKKAKDWYRALSKEEIKALEEENFVQFHTATMEKPEVDSEYATTDNEEHIQEQSNQDKSYFDSESIGNQSGGVRQREPLMDGPHPKVVESFKDV
>NZ_CP047788.1|WP_000586376.1|2307993_2309817_+|FUSC-family-protein
MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMILGTLTATTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGVLATMMVLITILLSKNKAEEQAIQNDFKLISKLLHAYNDKSAFSQVAKTAVDSFKASDKLLITSNSSSDKLSGRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIITQRDDRNKNVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEAEMRKPLYSKRIYQNLTLDSIVFRNTLRYAAIMMIAIFIALMFDFEKAYWIPLSAHTVLLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYTIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPYVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
>NZ_CP047788.1|WP_000660709.1|2306239_2307517_+|MFS-transporter
MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK
>NZ_CP047788.1|WP_000435044.1|2305077_2305689_-|DedA-family-protein
MEQIITEFISRFGYAAIFILILLENVLPIVPSEIILTFAGLMSVKSHLSILTLFIIATIASFIGLLILYYICRLISEERLYRFIDRHGKWIKLKSKDLKRANDWFKKYGVWAVFICRFIPVLRVLITIPAGVNRMNVVTFTVISLIGTTIWNFGLILLGRTLSDSFGMLMTGLHTYSRIMYVVIIIAVIYFAIRYIGKRKRVK
>NZ_CP047788.1|WP_000721330.1|2319655_2320522_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIIEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKELGL
>NZ_CP047788.1|WP_001573690.1|2320648_2320957_-|hypothetical-protein
MTVNIVFSIVFCISMVILGIYVAITKDFTLISFINQTTIADKHKTQIAYIFALCISLSAVFLMSAILCFEYDFIALSFLFLTIALLLIALFYVCFYKITKYP
>NZ_CP047788.1|WP_000678764.1|2321100_2321367_-|hypothetical-protein
MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD
>NZ_CP047788.1|WP_001793882.1|2321650_2323459_-|phospho-sugar-mutase
MHFHTHLLYNTCEKYCLGAVFFYFWGVFLYNSLHKCKGFSFHVLLSLTEILKGCLATMDKELWIKRANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLARYLNAQTNNPTIVIHYDIRHLSTEFAQIIANVLANHQIIVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKDYNGIKVYSSDGAQLSTDASELVSRYIEEVGDPLQIDIPISKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPELLKSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELANKSHADLLISTDPDADRLGIAERDAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSELTKSLARYNNVEYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKIESIMTHFRSNPPQEIQGLKVKAIEDYLTSEVYQLDKDTTSQIDSPKSNVIRVLFDEGFIALRPSGTEPKIKLYVSLKCPDFDDVAQKINAMIFS
>NZ_CP047788.1|WP_000755954.1|2323575_2323968_+|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKKVINVVGAIIFSDNKILCAQRSEKMSLPLMWEFPGGKVEKNETEKDALIREIREEMKCDLIVGDKVITTEHEYDFGIVRLTTYKCTLNKELPTLTEHKSIEWLSINELDKLNWAPADIPAVNKIMTEG
>NZ_CP047788.1|WP_160193938.1|2323969_2326831_+|DUF3427-domain-containing-protein
MSRLLNDFNQSLHKGFIDKHISHKGNYTPKLLVNNKNEKVLSTIIDELQKCETFYFSVAFITESGLASLKAQLLDLSNKGVKGKILTSNYLGFNSPKMYGELLKLKNVEVRLTDIAGFHAKGYIFEHKDYSSMVIGSSNLTSNALKVNYEHNVLLSTMKNGDLVDSVKNEFDLLWQNSTQLTQQWINSYKESFEYRSLEKLAEVEQTQMLLADKVKKSVEIVPNLMQAEALRSLKAIRDEAKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGILNRAKEEFKKVLPTKNDSDFGLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDEKEFDYIVFDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFEMFDYNIAYEIRLQAALESDILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTDYYGYSGEILQGLIFVSSKKEAYDLADKLSSKGIKSVALTGDDSVNYRQIVIEKLREGKINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGLRKSSNKEYVTVIDFIGNYKTNYLIPIALSGDQSQNKDNYKKFLTNNDSINGVSTINFEEVAKKQIYNSLDAVSLNQNKLILKAYEEVENRLGHMPLLMDFIQQHSIDPSVIFSKFSNYYEFLVRYKKIDALLTENESKNLVFFSRQIAPGLKRIDSIVLEELLKNELTYDELKNKMLNEVKDITEDDIDTSLRILDFSFYNAGIEKIYGSPIIECNERMIRLSDAFTNALSNQTFKIFLEDLIELSKYNNEKYQKGKNGLILYNKYSREDFSKIFNWSKNGSSVIMGYMIRSQEMPIFITYDKHEDISDSTKYEDEFLSQDELKWFTKSNRTLKSKEVQKILSHRAKGIKMYIFVQKKDDDGIYFYYLGTAGYIEGSEKQDKMPNGSNVVTMDLALDKAVRDDIYRYITN
>NZ_CP047788.1|WP_001793883.1|2327137_2327911_+|tandem-type-lipoprotein
MIHSKRLKMCLCLIILSVFIGACGMKKEESSKDKQIKENFNKTLSLYPTKNLEDFYDKEGFRDEEFDKGDKGTWIVDSEMVVELKDKKMESRSMVLYINRNTRTTKGNFIVRELWEDSKGYAQSKDTKYPVKMEHNRIIPTKQIADDKLRKEIENFKFFVQYGDFKDINDYKDGDISYNPNVPSYSAEYQLSNNDYNVKQLRKRYNIPTKKAPKLLIKGDGDLKGSSIGHKNLEFTFVENKEENIYFTDSINFKPTE
>NZ_CP047788.1|WP_000616191.1|2328890_2329685_+|tandem-type-lipoprotein
MIQSKKLTLGICLVLLIILIVGYVIMTKTNGRNAQIKDTFNQTLKLYPTKNLDGFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDMETRGMVLYINRNTRTTKGYYFISEMTDDSNGRPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENLKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSKNIEFTFVENKEENIYFTDSVQYTPSEDTRYESN
>NZ_CP047788.1|WP_031788452.1|2329688_2329811_-|hypothetical-protein
MSYIIKFTFKFFEMTTYISQLTLDIELVSSELLVILSGFI
>NZ_CP047788.1|WP_001224379.1|2330245_2330437_+|hypothetical-protein
MRKEIEALIFSDVSSYDIYVNTGVNQGLIGDIKDGYLTIDSMPYIDAERLYHFAMERKSLVTN

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Crispr_ID: NZ_CP047788_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_7

2401394-2401498

Orphan

Consensus_repeat	Method
TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_7

>merge|NZ_CP047788|7|2401394-2401498|CRISPRCasFinder
TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAAATAAAGGAACGCATTAGATAGCTTCGCTACTAATGCATAAGCCTTTCTAGCTCATAAAATTCGCAGAAA

>NZ_CP047788|7|6|2401394-2401498|CRISPRCasFinder
TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	ATAAAGGAACGCATTAGATAGCTTCGCTACTAA
TGCATAAGCCTTTCTAGCTCATAAAATTCGCAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000038955.1\|2403947_2405387_+\|multidrug-efflux-MFS-transporter-MdeA	unknown	unknown	gnl\|CDD\|129794
NZ_CP047788.1\|WP_000019127.1\|2401638_2402505_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP047788.1\|WP_000971554.1\|2393337_2394453_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234
NZ_CP047788.1\|WP_000286868.1\|2394463_2395156_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP047788.1\|WP_000615467.1\|2406983_2407715_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP047788.1\|WP_001110068.1\|2390992_2392351_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP047788.1\|WP_001125210.1\|2402831_2403518_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
NZ_CP047788.1\|WP_000819843.1\|2409316_2409679_+\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP047788.1\|WP_001046650.1\|2392352_2393360_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP047788.1\|WP_000200947.1\|2395166_2395634_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP047788.1\|WP_000825937.1\|2405507_2406287_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP047788.1\|WP_001791249.1\|2401034_2401139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000762708.1\|2403670_2403775_-\|putative-metal-homeostasis-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000162804.1\|2409697_2410297_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP047788.1\|WP_000916697.1\|2396664_2397612_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625
NZ_CP047788.1\|WP_000792567.1\|2399626_2400940_-\|immunoglobulin-binding-protein-sbi	unknown	unknown	gnl\|CDD\|288473
NZ_CP047788.1\|WP_000594516.1\|2398161_2399091_-\|bi-component-gamma-hemolysin-HlgAB-subunit-A	unknown	unknown	gnl\|CDD\|369625
NZ_CP047788.1\|WP_001012237.1\|2407811_2409062_-\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
NZ_CP047788.1\|WP_000479573.1\|2406267_2406987_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP047788.1\|WP_001056917.1\|2395685_2396663_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000038955.1\|2403947_2405387_+\|multidrug-efflux-MFS-transporter-MdeA	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.17835e-92
NZ_CP047788.1\|WP_000019127.1\|2401638_2402505_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	2.54055e-90
NZ_CP047788.1\|WP_000162804.1\|2409697_2410297_+\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	7.46019e-30
NZ_CP047788.1\|WP_000971554.1\|2393337_2394453_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	7.65079e-139
NZ_CP047788.1\|WP_000615467.1\|2406983_2407715_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.6707e-147
NZ_CP047788.1\|WP_001110068.1\|2390992_2392351_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP047788.1\|WP_001125210.1\|2402831_2403518_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	1.99794e-167
NZ_CP047788.1\|WP_000819843.1\|2409316_2409679_+\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.11961e-31
NZ_CP047788.1\|WP_001046650.1\|2392352_2393360_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP047788.1\|WP_000200947.1\|2395166_2395634_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00131493
NZ_CP047788.1\|WP_000825937.1\|2405507_2406287_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.99691e-99
NZ_CP047788.1\|WP_001012237.1\|2407811_2409062_-\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP047788.1\|WP_000286868.1\|2394463_2395156_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	3.94141e-128
NZ_CP047788.1\|WP_000916697.1\|2396664_2397612_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.12563e-91
NZ_CP047788.1\|WP_000792567.1\|2399626_2400940_-\|immunoglobulin-binding-protein-sbi	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	4.17882e-27
NZ_CP047788.1\|WP_000594516.1\|2398161_2399091_-\|bi-component-gamma-hemolysin-HlgAB-subunit-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	2.15607e-97
NZ_CP047788.1\|WP_000479573.1\|2406267_2406987_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	8.38308e-78
NZ_CP047788.1\|WP_001056917.1\|2395685_2396663_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	2.43039e-128

>NZ_CP047788.1|WP_001791249.1|2401034_2401139_+|hypothetical-protein
MLTNRLTSVNYVKKRLIQNIQRILSKKVLYGEMQ
>NZ_CP047788.1|WP_000792567.1|2399626_2400940_-|immunoglobulin-binding-protein-sbi
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVQKHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYYNKYYQYKGLIDKTVLTTIGSGYGSYIKPLEVSKESGNLAKSYAQVRNYVTESINTGKVLYAFYQKPELVKTAIKAQETATTFKNALTGIFKSFWK
>NZ_CP047788.1|WP_000594516.1|2398161_2399091_-|bi-component-gamma-hemolysin-HlgAB-subunit-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHEKGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>NZ_CP047788.1|WP_000916697.1|2396664_2397612_-|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGNDVEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKNTNHIKSMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFKNRNYTVKYEVNWKTHEIKVKGQN
>NZ_CP047788.1|WP_001056917.1|2395685_2396663_-|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MNMNKLVKSSVATSMALLLLSNTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKAAGNINSGYERPNPKDYDFSKIYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>NZ_CP047788.1|WP_000200947.1|2395166_2395634_+|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSLLLLVFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLILSVILNLPVWVVLLNAIPGVIFTLIVAIPLYLILRKRMAVLLR
>NZ_CP047788.1|WP_000286868.1|2394463_2395156_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDIHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIKQIKALQIIEDDKANLQHLTQKCGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGHRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLNHYILFLESTPKQVVYETV
>NZ_CP047788.1|WP_000971554.1|2393337_2394453_+|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFESFMRKYSYHLSSSRLISGSSTVYEEIESMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAEYPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>NZ_CP047788.1|WP_001046650.1|2392352_2393360_+|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSREIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>NZ_CP047788.1|WP_001110068.1|2390992_2392351_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKCKLLSQIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>NZ_CP047788.1|WP_000019127.1|2401638_2402505_+|cation-transporter
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNAITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>NZ_CP047788.1|WP_001125210.1|2402831_2403518_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIDIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>NZ_CP047788.1|WP_000762708.1|2403670_2403775_-|putative-metal-homeostasis-protein
MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK
>NZ_CP047788.1|WP_000038955.1|2403947_2405387_+|multidrug-efflux-MFS-transporter-MdeA
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGIVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIEMMNQIKIDTMLHGYHAGFLFALLITVISFFCSFMLQGKKKEVDSHQ
>NZ_CP047788.1|WP_000825937.1|2405507_2406287_+|transporter-substrate-binding-domain-containing-protein
MKRLLFVVIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKAEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFNDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSKSAFAFSKKVDDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>NZ_CP047788.1|WP_000479573.1|2406267_2406987_+|amino-acid-ABC-transporter-permease
MFLNLNSEQLHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKVLRSIARVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYRQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>NZ_CP047788.1|WP_000615467.1|2406983_2407715_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVGKGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVFVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKAEAREKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAREVSNNIVFIHEGVIGEQGAPEEIFNNPKTEELKRFLNVINEE
>NZ_CP047788.1|WP_001012237.1|2407811_2409062_-|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESAEDYGVQQFKKGFNAHVEEYIGDFIKPIKPILYKLQTYLKHKRR
>NZ_CP047788.1|WP_000819843.1|2409316_2409679_+|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>NZ_CP047788.1|WP_000162804.1|2409697_2410297_+|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKFRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK

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Crispr_ID: NZ_CP047788_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_8

2556957-2557037

Orphan

Consensus_repeat	Method
CAAATTGGCGGGGCCCCAACATAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_8

>merge|NZ_CP047788|8|2556957-2557037|CRISPRCasFinder
CAAATTGGCGGGGCCCCAACATAGAAGGTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGA

>NZ_CP047788|8|7|2556957-2557037|CRISPRCasFinder
CAAATTGGCGGGGCCCCAACATAGA	AGGTGACGAAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000230171.1\|2555790_2556813_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|274250
NZ_CP047788.1\|WP_000066900.1\|2557389_2557740_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
NZ_CP047788.1\|WP_000184409.1\|2557841_2559053_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP047788.1\|WP_000913006.1\|2549853_2550459_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
NZ_CP047788.1\|WP_000643988.1\|2555171_2555771_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP047788.1\|WP_000503824.1\|2551659_2552166_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|223595
NZ_CP047788.1\|WP_000602938.1\|2553980_2554466_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
NZ_CP047788.1\|WP_000259736.1\|2552724_2553984_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_CP047788.1\|WP_000076914.1\|2550626_2551631_+\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
NZ_CP047788.1\|WP_001791501.1\|2557093_2557264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_001573526.1\|2560404_2560656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000808500.1\|2554479_2554926_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP047788.1\|WP_000951069.1\|2559045_2559486_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP047788.1\|WP_001161085.1\|2565780_2566098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000600967.1\|2559648_2560413_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
NZ_CP047788.1\|WP_000866973.1\|2554931_2555165_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
NZ_CP047788.1\|WP_000134529.1\|2552167_2552662_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP047788.1\|WP_000592290.1\|2562426_2565594_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP047788.1\|WP_000051210.1\|2566342_2566507_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000413875.1\|2561044_2562310_+\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000230171.1\|2555790_2556813_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
NZ_CP047788.1\|WP_000066900.1\|2557389_2557740_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
NZ_CP047788.1\|WP_000184409.1\|2557841_2559053_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.47845e-73
NZ_CP047788.1\|WP_000913006.1\|2549853_2550459_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
NZ_CP047788.1\|WP_000643988.1\|2555171_2555771_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
NZ_CP047788.1\|WP_000503824.1\|2551659_2552166_+\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.50849e-64
NZ_CP047788.1\|WP_000602938.1\|2553980_2554466_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	3.19119e-50
NZ_CP047788.1\|WP_000259736.1\|2552724_2553984_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.37627e-158
NZ_CP047788.1\|WP_000076914.1\|2550626_2551631_+\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	4.64376e-130
NZ_CP047788.1\|WP_000808500.1\|2554479_2554926_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
NZ_CP047788.1\|WP_000951069.1\|2559045_2559486_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.58234e-15
NZ_CP047788.1\|WP_000600967.1\|2559648_2560413_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
NZ_CP047788.1\|WP_000866973.1\|2554931_2555165_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	2.40505e-24
NZ_CP047788.1\|WP_000134529.1\|2552167_2552662_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	5.35275e-97
NZ_CP047788.1\|WP_000592290.1\|2562426_2565594_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP047788.1\|WP_000413875.1\|2561044_2562310_+\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.47464e-141

>NZ_CP047788.1|WP_000230171.1|2555790_2556813_+|GTP-3',8-cyclase-MoaA
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATADGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>NZ_CP047788.1|WP_000643988.1|2555171_2555771_+|molybdenum-cofactor-guanylyltransferase-MobA
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>NZ_CP047788.1|WP_000866973.1|2554931_2555165_+|molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFENLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>NZ_CP047788.1|WP_000808500.1|2554479_2554926_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>NZ_CP047788.1|WP_000602938.1|2553980_2554466_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLTNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>NZ_CP047788.1|WP_000259736.1|2552724_2553984_+|molybdopterin-molybdotransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSTMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>NZ_CP047788.1|WP_000134529.1|2552167_2552662_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFNWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQLDQ
>NZ_CP047788.1|WP_000503824.1|2551659_2552166_+|molybdenum-cofactor-biosynthesis-protein-MoaB
MGEHQNVKLNRTVKAAVLTVSDTRNFDTDKGGQCVLQLLQVDNVEVSDAHYTIVKDEKVAITTQVKKWLEEDVDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNDKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>NZ_CP047788.1|WP_000076914.1|2550626_2551631_+|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQNKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIDHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRTACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENTSITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>NZ_CP047788.1|WP_000913006.1|2549853_2550459_+|ATP-binding-cassette-domain-containing-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>NZ_CP047788.1|WP_001791501.1|2557093_2557264_-|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNDLECDNNVKEPLKIYYVVILKSGIEMIFS
>NZ_CP047788.1|WP_000066900.1|2557389_2557740_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>NZ_CP047788.1|WP_000184409.1|2557841_2559053_-|MFS-transporter
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGVIISLFIKVDFEVTNSKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFAIERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>NZ_CP047788.1|WP_000951069.1|2559045_2559486_-|winged-helix-DNA-binding-protein
MLSQEFFNSFITIYRPYLKLTEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>NZ_CP047788.1|WP_000600967.1|2559648_2560413_+|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>NZ_CP047788.1|WP_001573526.1|2560404_2560656_-|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIALAIIHMGILAHSTYVYLY
>NZ_CP047788.1|WP_000413875.1|2561044_2562310_+|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSNPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEIQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>NZ_CP047788.1|WP_000592290.1|2562426_2565594_+|efflux-RND-transporter-permease-subunit
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTSMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKTSASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVTTIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKIDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>NZ_CP047788.1|WP_001161085.1|2565780_2566098_-|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>NZ_CP047788.1|WP_000051210.1|2566342_2566507_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD

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Crispr_ID: NZ_CP047788_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_9

2596919-2597044

Orphan

Consensus_repeat	Method
TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_9

>merge|NZ_CP047788|9|2596919-2597044|CRISPRCasFinder
TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGGAAAATTTTCGAGTAACTCAAAATAAAAACATTAAAAAATCATGAGAAACCAGTGATATCAAGAGTTTTGTGAGCTTTCGAGTAAAGAGG

>NZ_CP047788|9|8|2596919-2597044|CRISPRCasFinder
TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	AAAATTTTCGAGTAACTCAAAATAAAAACATTAAAAAATCATGAGAAACCAG
TGATATCAAGAGTTTTGTGAGCTTTCGAGTAAAGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_000170975.1\|2594677_2595076_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP047788.1\|WP_000542274.1\|2588152_2588521_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP047788.1\|WP_001250038.1\|2594226_2594664_+\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP047788.1\|WP_001044451.1\|2603132_2603987_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP047788.1\|WP_000586768.1\|2591522_2592383_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205
NZ_CP047788.1\|WP_000389651.1\|2590716_2591526_+\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_CP047788.1\|WP_000569649.1\|2587191_2588136_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP047788.1\|WP_000179061.1\|2600291_2600996_+\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NZ_CP047788.1\|WP_000130145.1\|2598590_2600255_+\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP047788.1\|WP_000850000.1\|2606879_2607296_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP047788.1\|WP_000044369.1\|2602106_2602922_+\|hydrolase	unknown	unknown	gnl\|CDD\|319792
NZ_CP047788.1\|WP_000136272.1\|2597109_2597289_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236623
NZ_CP047788.1\|WP_000791607.1\|2592372_2593179_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP047788.1\|WP_001791584.1\|2597938_2598121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_001791582.1\|2606469_2606637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000222271.1\|2604046_2606473_-\|polysaccharide-lyase-8-family-protein	unknown	unknown	gnl\|CDD\|238517
NZ_CP047788.1\|WP_000204271.1\|2595424_2596861_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP047788.1\|WP_001221836.1\|2593183_2593978_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP047788.1\|WP_094409958.1\|2588773_2590341_-\|IS3-like-element-ISSau2-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP047788.1\|WP_000769709.1\|2601386_2601812_-\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_000170975.1\|2594677_2595076_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NZ_CP047788.1\|WP_000542274.1\|2588152_2588521_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NZ_CP047788.1\|WP_001250038.1\|2594226_2594664_+\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
NZ_CP047788.1\|WP_001044451.1\|2603132_2603987_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.20929e-22
NZ_CP047788.1\|WP_000586768.1\|2591522_2592383_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
NZ_CP047788.1\|WP_000389651.1\|2590716_2591526_+\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP047788.1\|WP_000569649.1\|2587191_2588136_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
NZ_CP047788.1\|WP_000179061.1\|2600291_2600996_+\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.39507e-119
NZ_CP047788.1\|WP_000130145.1\|2598590_2600255_+\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP047788.1\|WP_000850000.1\|2606879_2607296_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.51415e-41
NZ_CP047788.1\|WP_000136272.1\|2597109_2597289_+\|hypothetical-protein	gnl\|CDD\|236623	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ.	0.0004492
NZ_CP047788.1\|WP_000791607.1\|2592372_2593179_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.81787e-49
NZ_CP047788.1\|WP_000044369.1\|2602106_2602922_+\|hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.06188e-100
NZ_CP047788.1\|WP_000222271.1\|2604046_2606473_-\|polysaccharide-lyase-8-family-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
NZ_CP047788.1\|WP_000204271.1\|2595424_2596861_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.62307e-63
NZ_CP047788.1\|WP_001221836.1\|2593183_2593978_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.21958e-120
NZ_CP047788.1\|WP_094409958.1\|2588773_2590341_-\|IS3-like-element-ISSau2-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.59839e-44
NZ_CP047788.1\|WP_000769709.1\|2601386_2601812_-\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	8.17372e-34

>NZ_CP047788.1|WP_000204271.1|2595424_2596861_+|MarR-family-transcriptional-regulator
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILIFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNHINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKQYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>NZ_CP047788.1|WP_000170975.1|2594677_2595076_+|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NZ_CP047788.1|WP_001250038.1|2594226_2594664_+|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_CP047788.1|WP_001221836.1|2593183_2593978_+|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQYFHFDTDLNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSL
>NZ_CP047788.1|WP_000791607.1|2592372_2593179_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPINSFVHHLDPRAKLMFVFLFIILIFFCHSPLTYLWMFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVKRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>NZ_CP047788.1|WP_000586768.1|2591522_2592383_+|energy-coupling-factor-transporter-ATPase
MIIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKEKLADWHIGLPEIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NZ_CP047788.1|WP_000389651.1|2590716_2591526_+|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALEQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTATEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVDQL
>NZ_CP047788.1|WP_094409958.1|2588773_2590341_-|IS3-like-element-ISSau2-family-transposase
MKTLKGALFMSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDIAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVHKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVFKKVSSIGKRDDSKRKQITAYKTIEALKHQYPIQRLCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGAKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>NZ_CP047788.1|WP_000542274.1|2588152_2588521_+|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NZ_CP047788.1|WP_000569649.1|2587191_2588136_+|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NZ_CP047788.1|WP_000136272.1|2597109_2597289_+|hypothetical-protein
MTEIVEFLSDGKLASRLEIQETMGLQKSYTSELIAELKKLEIIGSEGRGPGTRYYLIRD
>NZ_CP047788.1|WP_001791584.1|2597938_2598121_+|hypothetical-protein
MIDSVFWKKAFIPVYFIVAMLVFLLFRFYIKTNNFSIYLMIIFLMCLGTASIIYNYKNNR
>NZ_CP047788.1|WP_000130145.1|2598590_2600255_+|acetolactate-synthase-AlsS
MTDKKYTAADMVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGVVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NZ_CP047788.1|WP_000179061.1|2600291_2600996_+|acetolactate-decarboxylase
MASVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHVRMMPAQEPPYTRLIDSARRQPEQTETYVKGAVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIQDEDFINANIDYKDIADEIREAE
>NZ_CP047788.1|WP_000769709.1|2601386_2601812_-|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNQLASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
>NZ_CP047788.1|WP_000044369.1|2602106_2602922_+|hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVITVVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILHHISAQYNVEFIPQRAFEGNETHYNFYFHSTGNHNNDRRILEVLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NZ_CP047788.1|WP_001044451.1|2603132_2603987_+|M23-family-metallopeptidase
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTWQSDVHELKVCTQNDGTIEQIWIDKANQFGVAVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKNLGKVNADYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTKESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFINNRELIKGDVVCGLQGE
>NZ_CP047788.1|WP_000222271.1|2604046_2606473_-|polysaccharide-lyase-8-family-protein
MTYRMKKWQKLSTITLLMAGVITLNGGEFRSIDKHQIAVADTNVQTTDYEKLRNIWLDVNYGYDKYDENNPDMKKKFEATENEAEKLLKEMKTESDRKYLWESSKDLDTKSADMTRTYRNIEKISEAMKHKNTKLKTDENKTKVKDALEWLHKNAYGKEPDKKVADLTSNFKNKTSRNTNLNWWDYEIGTPRALTNTLILLQEDFTDEEKKKYTAPIKTFAPDSDKILSSVGKSEPAKGGNLVDISKVKLLESIIEEDKDMMKKSIDSFNTVFTYAQNSATGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFNDSNQNDTTLKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASATVMKSLLRLSDTMDKSTKAKYKKIVKTSVESDSSYKQTDYLSSYSDISKMKSLMEDSTISTNGLTQQLKIYNDMDRVTYHNKGLDFAFGLSMTSKNVARYESINGENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKSTDVKKSSKTFVGGTKFDDQHASIGMDFENQDKTLTAKKSYFILNDKIVFLGTGIKSTDSSKNPVTTIENRKANDYKLYKDDTQTTNSDNQETNSLFLESTNSTQNNIGYHFLNESKITVKKESHTGKWSDINKSQKDIQKTDEYYEVTQKHSNTDSKYAYVLYPGLSKDVFKSKASKVTVVKQEDDFHVVKDNESVWAGINYSDSAKTFEINNTKVEVKAKGMFILTKKDDNTYECSFYNPESTNSVSDIESKISMTGYSIINKNTSTSNESGVRFELTK
>NZ_CP047788.1|WP_001791582.1|2606469_2606637_-|hypothetical-protein
MLKIWVIDCLYASTFFVDCLTVDSQLYTLTNFEKLNHYLIIIFIAHAQHKKETCQ
>NZ_CP047788.1|WP_000850000.1|2606879_2607296_+|MerR-family-transcriptional-regulator
MKTKEVVALMNISQDTLRYYEKVGVIPPVNRDENGYRIYNDNDLNWIYLVKNLRNAGVSIESLIEFCRLAQLPKNENIQAQQKQILNKQLEELNENLKTIHDARDLLQYKIDNYDNHIAKINASDNHDDNVERLWERK

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Crispr_ID: NZ_CP047788_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047788_10

2808601-2808690

Orphan

Consensus_repeat	Method
TGATTGAGAAGTCAGTCGAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047788_10

>merge|NZ_CP047788|10|2808601-2808690|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAACTATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAATTGATTGAGAAGTCAGTCAAAAACG

>NZ_CP047788|10|9|2808601-2808690|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAAC	TATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAAT
TGATTGAGAAGTCAGTCAAAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047788.1\|WP_001549197.1\|2799766_2799901_+\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213
NZ_CP047788.1\|WP_001019766.1\|2813634_2814276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374630
NZ_CP047788.1\|WP_000120330.1\|2802471_2803686_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP047788.1\|WP_000197638.1\|2803710_2804454_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP047788.1\|WP_000917289.1\|2804628_2804913_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP047788.1\|WP_000481967.1\|2808929_2809247_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP047788.1\|WP_001103930.1\|2809972_2810290_+\|DUF1474-family-protein	unknown	unknown	gnl\|CDD\|369323
NZ_CP047788.1\|WP_000240651.1\|2804988_2806605_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP047788.1\|WP_001002721.1\|2810353_2811223_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214926
NZ_CP047788.1\|WP_000867948.1\|2800502_2801288_-\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP047788.1\|WP_000447451.1\|2811236_2812946_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP047788.1\|WP_000179345.1\|2806673_2807846_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP047788.1\|WP_001231378.1\|2809383_2809587_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000522388.1\|2801648_2802275_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP047788.1\|WP_000708433.1\|2809243_2809399_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000620857.1\|2807859_2808534_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP047788.1\|WP_000403839.1\|2809588_2809972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_000153640.1\|2808706_2808925_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP047788.1\|WP_000356937.1\|2813257_2813638_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047788.1\|WP_001105709.1\|2798967_2799531_-\|accessory-gene-regulator-AgrB	unknown	unknown	gnl\|CDD\|214819

Protein	Function_ID	Function_description	E-value
NZ_CP047788.1\|WP_001549197.1\|2799766_2799901_+\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
NZ_CP047788.1\|WP_001019766.1\|2813634_2814276_+\|hypothetical-protein	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	2.52046e-113
NZ_CP047788.1\|WP_000120330.1\|2802471_2803686_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	9.81296e-11
NZ_CP047788.1\|WP_000197638.1\|2803710_2804454_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.80796e-11
NZ_CP047788.1\|WP_000917289.1\|2804628_2804913_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
NZ_CP047788.1\|WP_000481967.1\|2808929_2809247_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.89089e-17
NZ_CP047788.1\|WP_001103930.1\|2809972_2810290_+\|DUF1474-family-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	2.13556e-19
NZ_CP047788.1\|WP_000240651.1\|2804988_2806605_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP047788.1\|WP_001002721.1\|2810353_2811223_+\|hypothetical-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.61429e-15
NZ_CP047788.1\|WP_000867948.1\|2800502_2801288_-\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.32273e-126
NZ_CP047788.1\|WP_000447451.1\|2811236_2812946_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	4.69521e-166
NZ_CP047788.1\|WP_000179345.1\|2806673_2807846_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.10093e-47
NZ_CP047788.1\|WP_000522388.1\|2801648_2802275_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	7.96692e-115
NZ_CP047788.1\|WP_000620857.1\|2807859_2808534_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.58614e-10
NZ_CP047788.1\|WP_000153640.1\|2808706_2808925_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
NZ_CP047788.1\|WP_001105709.1\|2798967_2799531_-\|accessory-gene-regulator-AgrB	gnl\|CDD\|214819	smart00793, AgrB, Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.	1.06502e-53

>NZ_CP047788.1|WP_000620857.1|2807859_2808534_-|helix-turn-helix-transcriptional-regulator
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKSTTLHKEILQTDSRLSSDIFKEY
>NZ_CP047788.1|WP_000179345.1|2806673_2807846_-|site-specific-integrase
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>NZ_CP047788.1|WP_000240651.1|2804988_2806605_+|chaperonin-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDATIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEVGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>NZ_CP047788.1|WP_000917289.1|2804628_2804913_+|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>NZ_CP047788.1|WP_000197638.1|2803710_2804454_-|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVYTQIFGTQQTSPNTERLIVIARKIPLFIFFVSIVGPLLEEYVFRKVIFGELFNAIKGNRIVAFAIATTVSSLIFALAHNDYKFIPIYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>NZ_CP047788.1|WP_000120330.1|2802471_2803686_+|hypothetical-protein
MSYHWFKKMLLSTSMLILSSSSSLGLATHTVEAKDNLNGEKPTTNLNHNVTSPSVNSEMNNNETGTPHESNQAGNEGTGSNSRDANPDSNNVKPDSNNQNPSPDSKPDPNNPNPGPNPKPDPDKPKPNPEPKPDPDKPKPNPDPKPDPDKPKPNPDPKPDPNPNPNPKPDPNKPNPNPSPNPNQPGDSNQSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINQLGKEYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>NZ_CP047788.1|WP_000522388.1|2801648_2802275_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYENQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>NZ_CP047788.1|WP_000867948.1|2800502_2801288_-|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGKLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>NZ_CP047788.1|WP_001549197.1|2799766_2799901_+|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>NZ_CP047788.1|WP_001105709.1|2798967_2799531_-|accessory-gene-regulator-AgrB
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTLAYILNIFIFTLITNISFYLIRRYAHGAHAPSSFWCYIESITLFIVLPLLVLHFHINETLMMFLALLSVGVVIKYAPAATKKKPIPARLVKQKRYFSIIISTILFIITLFVKEPYTQFIQLGIIIQAITLLPIYYSKED
>NZ_CP047788.1|WP_000153640.1|2808706_2808925_+|helix-turn-helix-transcriptional-regulator
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>NZ_CP047788.1|WP_000481967.1|2808929_2809247_+|helix-turn-helix-domain-containing-protein
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
>NZ_CP047788.1|WP_000708433.1|2809243_2809399_+|hypothetical-protein
MKIYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGEITTCENK
>NZ_CP047788.1|WP_001231378.1|2809383_2809587_+|hypothetical-protein
MRKQVIITKTVVGWYNIKDTQHNLMLNIPPKVFEQYFPDVSKDVQVVCLEMDLSKITEIKNKKKVGS
>NZ_CP047788.1|WP_000403839.1|2809588_2809972_+|hypothetical-protein
MEIKQKYQLSKVVKILEVVLYEEDKFQSDKDYHYQDKALYEYALKLVHNGLFNILAELDFEDEAFLILDEVTMTLSDVMKETQHVYRYSVIDEKGEHKHTTDRKGHVIGMLEWALDYIAGNIEVEEL
>NZ_CP047788.1|WP_001103930.1|2809972_2810290_+|DUF1474-family-protein
MNWEIKDLMCDIEAVKEKINDVAIKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLHVYLKEFGELIQKFHEIEKASSENFGEVSDDAQKLKITE
>NZ_CP047788.1|WP_001002721.1|2810353_2811223_+|hypothetical-protein
MNEIKLEYDTHVSVVHYESLDSRSFNSFSKINWSKLVNKLSVPIEANYKYARGVAVYGDIKNGANDQGEIIKKHRNDKNVIYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSYSHRTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEFEQSNASPNVIGYTRRDSEYWRELCFGTTEGNRNNALASLIGHLLRCHVNDYIVYSFALLWGQFACKPPMKEQEINATFQSILNKHYNN
>NZ_CP047788.1|WP_000447451.1|2811236_2812946_+|DUF927-domain-containing-protein
METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGIALNQLIPSKKEGEPDKKVFITSTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINASKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQKLIDSFQSKGTLEGYSKKVFGQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSATYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDPPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIAGDGYSSVKNGDIKAIYKRDYLCILGQTVHDKLGHEMQTITGQWGKKGYLIKGEKDRLQKKVSHKNIKYRGFAINKEMLEELGFDFSNSHNPYSDY
>NZ_CP047788.1|WP_000356937.1|2813257_2813638_+|hypothetical-protein
MDKEQLKKYIYDYVKEYKEIPIYQLEDLFKEMNHDYIGRTSVTHDKDENIVFWSGWNKITMFALIELVKSEQLDLVYRGSFVMRYLLDGRVPNLPLAICYPEDGQQTDVPSWVPMVLRINKEEKIK
>NZ_CP047788.1|WP_001019766.1|2813634_2814276_+|hypothetical-protein
MNIETIVNQFETRAGTLLRYYTGLLEHSKVQPCCFKLYNDPFDMAYVMMNGKLFGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPAPELVEGLRLVTEFVQDENATQEDYKALEHKLTELKSSYYSLNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047788_5	5.1\|1293047\|33\|NZ_CP047788\|CRISPRCasFinder	1293047-1293079	33	NZ_CP047788.1	2522753-2522785	1	0.97
NZ_CP047788_5	5.1\|1293047\|33\|NZ_CP047788\|CRISPRCasFinder	1293047-1293079	33	NZ_CP047788.1	1059768-1059800	1	0.97
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	414287-414317	1	0.968
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	1033492-1033522	1	0.968
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	294393-294426	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	1033552-1033585	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	1293007-1293040	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	1326211-1326244	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	1744264-1744297	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	1819020-1819053	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	2415001-2415034	2	0.941
NZ_CP047788_1	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	NZ_CP047788.1	2557040-2557073	2	0.941
NZ_CP047788_1	1.3\|71506\|37\|NZ_CP047788\|CRT	71506-71542	37	NZ_CP047788.1	1279777-1279813	2	0.946
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	1185559-1185589	2	0.935
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	1230389-1230419	2	0.935
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	82070-82100	2	0.935
NZ_CP047788_8	8.1\|2556982\|31\|NZ_CP047788\|CRISPRCasFinder	2556982-2557012	31	NZ_CP047788.1	1279659-1279689	2	0.935

1. spacer 5.1|1293047|33|NZ_CP047788|CRISPRCasFinder matches to position: 2522753-2522785, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggtcccaacaaagagaaattggattcccaat	Protospacer
****.****************************

2. spacer 5.1|1293047|33|NZ_CP047788|CRISPRCasFinder matches to position: 1059768-1059800, mismatch: 1, identity: 0.97

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggattcccaat	Protospacer
************ ********************

3. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 414287-414317, mismatch: 1, identity: 0.968

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** ****************************

4. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 1033492-1033522, mismatch: 1, identity: 0.968

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** ****************************

5. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 294393-294426, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcaaaaagaaattctacagacaatgcaagtt	Protospacer
*****.***.************************

6. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 1033552-1033585, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
*********.************.***********

7. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 1293007-1293040, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
*********.************.***********

8. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 1326211-1326244, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaaacaatgcaagtt	Protospacer
*********.***********.************

9. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 1744264-1744297, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaaacaatgcaagtt	Protospacer
*********.***********.************

10. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 1819020-1819053, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaggcaatgcaagtt	Protospacer
*********.************.***********

11. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 2415001-2415034, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcaaaaagaaattctacagacaatgcaagtt	Protospacer
*****.***.************************

12. spacer 1.2|71451|34|NZ_CP047788|CRT matches to position: 2557040-2557073, mismatch: 2, identity: 0.941

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcaaaaagaaattctacagacaatgcaagtt	Protospacer
*****.***.************************

13. spacer 1.3|71506|37|NZ_CP047788|CRT matches to position: 1279777-1279813, mismatch: 2, identity: 0.946

ctgactttctgtcagcttacaataatgtgcaagttgg	CRISPR spacer
ctgactttccgccagcttacaataatgtgcaagttgg	Protospacer
*********.*.*************************

14. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 1185559-1185589, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctggcgaaaagtcagcttacaataatgtg	Protospacer
** **.*************************

15. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 1230389-1230419, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagccagcttacaataatgtg	Protospacer
** **********.*****************

16. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 82070-82100, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacgataatgtg	Protospacer
** *******************.********

17. spacer 8.1|2556982|31|NZ_CP047788|CRISPRCasFinder matches to position: 1279659-1279689, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgtaaagtcagcttacaataatgtg	Protospacer
** ***** **********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047788_2	2.1\|380227\|28\|NZ_CP047788\|CRISPRCasFinder	380227-380254	28	NZ_CP007066	Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence	8899-8926	7	0.75

1. spacer 2.1|380227|28|NZ_CP047788|CRISPRCasFinder matches to NZ_CP007066 (Fusobacterium nucleatum subsp. vincentii 3_1_27 plasmid, complete sequence) position: , mismatch: 7, identity: 0.75

ttttaataggcaatggaagttggcgggg	CRISPR spacer
ttttaataggcaatggaagtaatctaaa	Protospacer
******************** . * ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 35817

Staphylococcus_phage(96.77%)

capsid,portal,transposase,holin,tail,head,terminase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625088.1\|0_1662_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000025274.1\|1677_2865_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_001607394.1\|2848_3586_+\|protease	Clp protease ClpP	A0A1W6JPK0	Staphylococcus_phage	4.0e-129	99.6
WP_000154567.1\|3608_4754_+\|capsid	phage major capsid protein	A0A1W6JPL4	Staphylococcus_phage	1.9e-215	100.0
WP_000238240.1\|4773_5058_+	hypothetical protein	A0A1W6JPL8	Staphylococcus_phage	2.3e-45	100.0
WP_000150936.1\|5047_5332_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|5315_5678_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000114341.1\|5674_6079_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
WP_000565498.1\|6075_6483_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_115307015.1\|6483_7125_+\|tail	phage tail protein	C8CH27	Staphylococcus_phage	7.2e-119	99.5
WP_111759497.1\|7085_7391_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	4.3e-29	91.9
WP_001096355.1\|7440_7791_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_160193844.1\|8035_12565_+\|tail	phage tail tape measure protein	A0EX03	Staphylococcus_phage	0.0e+00	98.3
WP_000567413.1\|12561_14046_+\|tail	phage tail protein	A0EX04	Staphylococcus_phage	4.5e-297	100.0
WP_160193846.1\|14061_17847_+	hypothetical protein	A0EX05	Staphylococcus_phage	0.0e+00	98.7
WP_001153681.1\|17836_17989_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_001040259.1\|18035_18323_+	hypothetical protein	G4KNR2	Staphylococcus_phage	9.9e-44	100.0
WP_042363643.1\|18378_18753_+	hypothetical protein	G4KNR3	Staphylococcus_phage	1.6e-38	98.4
WP_000750406.1\|19173_19947_+	staphylococcal enterotoxin type A	A0EX09	Staphylococcus_phage	2.2e-146	100.0
WP_011447039.1\|20055_20232_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_001791821.1\|20284_20392_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|20443_20698_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|20709_21465_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000919350.1\|21655_22147_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
WP_020444758.1\|22673_23132_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
WP_000727649.1\|23226_23676_-	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
WP_000702263.1\|24361_24712_+	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|24764_25025_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669789.1\|25335_25515_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_000669728.1\|26472_28542_+	MAP domain-containing protein	NA	NA	NA	NA
WP_000277741.1\|28839_30486_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
WP_001068528.1\|30733_32020_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000990056.1\|32219_32318_+	hypothetical protein	NA	NA	NA	NA
WP_000681966.1\|32559_32736_+	hypothetical protein	NA	NA	NA	NA
WP_000691584.1\|32993_33374_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000991315.1\|33370_34267_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000645732.1\|34267_34948_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000763048.1\|34944_35817_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2

DBSCAN-SWA_2

41062 : 41464

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000205106.1\|41062_41464_-	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9

DBSCAN-SWA_3

45661 : 47692

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000149686.1\|45661_46222_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_000275719.1\|46594_47692_+	pectate lyase	U5PWM6	Bacillus_phage	8.7e-48	34.6

DBSCAN-SWA_4

51722 : 54006

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000284434.1\|51722_53192_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	8.5e-107	44.5
WP_000040861.1\|53184_54006_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7

DBSCAN-SWA_5

57697 : 64475

Gordonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000572878.1\|57697_58993_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_001165363.1\|59101_59404_+	hypothetical protein	NA	NA	NA	NA
WP_000272063.1\|59586_60279_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_000992924.1\|60275_62468_+	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000774552.1\|62471_64475_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	9.8e-114	36.1

DBSCAN-SWA_6

71704 : 76732

Catovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001231458.1\|71704_72652_+	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	1.5e-16	27.8
WP_001147874.1\|72732_74094_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.5e-102	43.0
WP_000548777.1\|74263_74794_+	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_000140179.1\|75040_76111_+	DNA polymerase IV	NA	NA	NA	NA
WP_000613738.1\|76177_76732_-	3'-5' exonuclease	B5WZL1	Staphylococcus_phage	1.2e-29	35.7

DBSCAN-SWA_7

80185 : 80599

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001643743.1\|80185_80599_+	hypothetical protein	A0A1Q1PVU5	Staphylococcus_phage	3.0e-17	38.5

DBSCAN-SWA_8

85580 : 86210

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000153535.1\|85580_86210_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-06	30.8

DBSCAN-SWA_9

101691 : 103428

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000597238.1\|101691_103428_+	SAV1866 family putative multidrug efflux ABC transporter	W8CYL7	Bacillus_phage	1.7e-53	30.4

DBSCAN-SWA_10

119906 : 120635

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144055.1\|119906_120635_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7

DBSCAN-SWA_11

131289 : 131634

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000290301.1\|131289_131634_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7

DBSCAN-SWA_12

141222 : 141963

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000216874.1\|141222_141963_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8

DBSCAN-SWA_13

149826 : 154106

Staphylococcus_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147612242.1\|149826_150609_+	exotoxin	A0A1X9H080	Staphylococcus_phage	8.7e-34	38.6
WP_000821649.1\|150890_151610_+	staphylococcal enterotoxin type M	A0A1X9H080	Staphylococcus_phage	4.9e-23	34.6
WP_000721567.1\|151644_152373_+	staphylococcal enterotoxin type I	A0A1X9H080	Staphylococcus_phage	1.3e-28	39.8
WP_000764684.1\|152526_153312_+	staphylococcal enterotoxin type C1/U	A0A097PAT7	Streptococcus_pyogenes_phage	2.9e-45	42.7
WP_001235656.1\|153350_154106_+	staphylococcal enterotoxin type N	A0A075M4C7	Staphylococcus_phage	2.3e-39	40.8

DBSCAN-SWA_14

157360 : 167760

Staphylococcus_phage(85.71%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000711499.1\|157360_158707_-	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	2.5e-65	51.1
WP_000595635.1\|158953_159469_-	membrane protein	NA	NA	NA	NA
WP_001039022.1\|160483_161203_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	6.4e-124	93.7
WP_001038766.1\|161326_162043_+\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	5.5e-83	62.6
WP_001038734.1\|163088_163805_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	6.6e-129	97.1
WP_001038742.1\|163974_164694_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.0e-129	98.3
WP_001794363.1\|164873_166613_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-286	98.6
WP_000072622.1\|166605_167760_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	7.8e-39	36.3

DBSCAN-SWA_15

178861 : 227596

Staphylococcus_phage(94.59%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000125075.1\|178861_179431_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.2e-39	54.8
WP_001093574.1\|179430_180798_+	FRG domain-containing protein	NA	NA	NA	NA
WP_000414222.1\|180946_181519_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_000627550.1\|181616_181961_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	5.1e-55	94.7
WP_000669038.1\|182001_182628_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.5e-81	84.1
WP_000070654.1\|182703_183699_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	3.8e-74	97.2
WP_001794016.1\|183779_184430_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.0e-51	88.4
WP_016186903.1\|184731_185187_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.5e-75	94.5
WP_000348372.1\|185345_186824_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-282	97.2
WP_000778539.1\|186828_187830_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.5e-183	96.7
WP_000718107.1\|187826_188084_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672010.1\|188149_188623_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	9.5e-84	98.1
WP_001801476.1\|188627_189374_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-139	97.2
WP_000109909.1\|189666_191259_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_000933819.1\|191630_192824_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
WP_000366165.1\|192948_193857_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000453316.1\|194068_194902_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-158	99.6
WP_000623481.1\|195151_195505_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	97.4
WP_001200542.1\|195501_195867_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000091444.1\|196121_196424_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|196682_197396_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168914.1\|198585_199221_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001030476.1\|199518_199962_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-49	77.4
WP_001152695.1\|199948_200392_-	competence protein ComK	NA	NA	NA	NA
WP_000671059.1\|200504_200975_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	7.7e-70	85.8
WP_000384171.1\|201173_201398_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|201673_202528_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000989104.1\|202614_203907_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.6e-216	95.1
WP_000221181.1\|203906_204221_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.7e-52	97.1
WP_001261683.1\|204863_206366_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	5.0e-30	98.6
WP_001819953.1\|206858_207890_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.8e-195	98.3
WP_000493891.1\|207896_208529_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-112	99.0
WP_001159032.1\|208539_209721_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_001008556.1\|209733_210198_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-68	97.4
WP_001196351.1\|210319_211321_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.0e-183	99.1
WP_014937042.1\|211431_211551_+	hypothetical protein	NA	NA	NA	NA
WP_000266099.1\|211553_212381_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000757543.1\|212953_213355_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000764425.1\|213473_214037_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	1.1e-99	95.7
WP_000526541.1\|214033_214987_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	6.4e-79	99.3
WP_001025064.1\|215097_216279_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
WP_001108722.1\|216570_218985_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.8
WP_000836472.1\|219006_219318_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-50	96.1
WP_001050520.1\|219641_226211_+	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.7e-295	88.7
WP_000284993.1\|226327_227596_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	5.9e-56	99.1

DBSCAN-SWA_16

235721 : 239658

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000733283.1\|235721_236567_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	A0A1B0VBP7	Salmonella_phage	1.5e-31	34.0
WP_001096374.1\|236673_238431_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_001284656.1\|238420_238801_+	penicillinase repressor BlaI	NA	NA	NA	NA
WP_000690628.1\|239064_239658_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.1e-41	51.1

DBSCAN-SWA_17

245240 : 250610

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001091387.1\|245240_246098_+	DUF1444 domain-containing protein	A0A2H4PQY3	Staphylococcus_phage	6.8e-72	100.0
WP_001048374.1\|246126_246765_+	DUF4479 domain-containing protein	NA	NA	NA	NA
WP_000118301.1\|246785_250610_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.6e-83	47.0

DBSCAN-SWA_18

259182 : 260889

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000862084.1\|259182_260889_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.1e-274	99.8

DBSCAN-SWA_19

267493 : 270124

Cronobacter_phage(50.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000186029.1\|267493_268756_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	2.7e-85	42.1
WP_001279341.1\|268849_270124_-\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	1.7e-10	29.0

DBSCAN-SWA_20

273892 : 278028

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000808837.1\|273892_275497_-	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	1.2e-114	100.0
WP_000291426.1\|275483_276644_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_000553919.1\|276758_277205_-	OsmC family protein	NA	NA	NA	NA
WP_000174275.1\|277284_278028_+	glycerophosphoryl diester phosphodiesterase	M1HTS7	Paramecium_bursaria_Chlorella_virus	8.3e-18	29.9

DBSCAN-SWA_21

295610 : 298808

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000226930.1\|295610_298808_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	5.5e-135	30.7

DBSCAN-SWA_22

303740 : 305498

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001232655.1\|303740_305498_+	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	3.3e-41	100.0

DBSCAN-SWA_23

310381 : 318546

Feldmannia_irregularis_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080025.1\|310381_311083_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	1.6e-07	28.7
WP_073392727.1\|311085_312747_+	PAS domain S-box protein	W8CYF6	Bacillus_phage	1.7e-34	39.0
WP_000849445.1\|313247_314735_+	hypothetical protein	NA	NA	NA	NA
WP_001038301.1\|315027_317658_+	DNA polymerase I	A8E2B3	Enterococcus_phage	1.8e-46	32.7
WP_001114454.1\|317673_318546_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.6e-42	39.1

DBSCAN-SWA_24

322460 : 333614

Brevibacillus_phage(20.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000808621.1\|322460_323381_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	8.1e-31	29.4
WP_016186894.1\|323473_323569_+	hypothetical protein	NA	NA	NA	NA
WP_000435132.1\|323793_325731_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	7.8e-116	36.0
WP_000049150.1\|326157_327651_+	amino acid permease	NA	NA	NA	NA
WP_001791219.1\|327879_328407_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.3e-11	33.1
WP_001125540.1\|328435_328636_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_001138360.1\|328682_329039_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_000032653.1\|329180_329789_+	NUDIX domain-containing protein	A0A060AB76	Staphylococcus_phage	1.7e-21	36.4
WP_001280014.1\|329807_330737_+	hypothetical protein	NA	NA	NA	NA
WP_001790560.1\|330741_330852_+	hypothetical protein	NA	NA	NA	NA
WP_000127572.1\|330899_332201_+	trigger factor	NA	NA	NA	NA
WP_000472293.1\|332351_333614_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-139	61.7

DBSCAN-SWA_25

343180 : 345811

Catovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000425358.1\|343180_345811_+\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.7e-153	40.4

DBSCAN-SWA_26

355926 : 391524

uncultured_Mediterranean_phage(18.75%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005767.1\|355926_356931_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_001019178.1\|356932_357958_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112045.1\|357980_359120_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001160682.1\|359138_359399_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_000749802.1\|359673_361953_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_160193856.1\|362155_364429_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.2e-64	29.3
WP_000364542.1\|364450_364969_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_001058583.1\|365396_367586_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
WP_000869979.1\|367597_368050_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_000717800.1\|368046_368922_+	cell wall amidase	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
WP_000590826.1\|369382_370645_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_000044796.1\|370660_372427_+\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
WP_001791215.1\|372759_372888_+	hypothetical protein	NA	NA	NA	NA
WP_000682640.1\|372887_373661_+\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_000102741.1\|373821_375096_-	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	6.3e-106	50.9
WP_000704122.1\|375180_375603_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_000752909.1\|375702_375885_+	CsbD family protein	NA	NA	NA	NA
WP_000008061.1\|375924_376071_+	hypothetical protein	NA	NA	NA	NA
WP_123097183.1\|376307_377321_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_000409167.1\|377630_378773_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.3e-33	29.3
WP_000066097.1\|378773_379892_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000567025.1\|380573_381242_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_160193858.1\|381243_383721_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.5e-66	29.0
WP_000734077.1\|384063_386694_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
WP_000426912.1\|386756_387017_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_000939059.1\|387020_387449_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000134779.1\|387463_387772_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_000342267.1\|388056_388695_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
WP_000137775.1\|388697_389621_+	U32 family peptidase	NA	NA	NA	NA
WP_000848304.1\|389632_390901_+	U32 family peptidase	Q6DW11	Phage_TP	4.0e-36	31.7
WP_000648617.1\|390900_391524_+	uridine kinase	A0A1V0SAA3	Catovirus	2.8e-35	41.1

DBSCAN-SWA_27

407988 : 414131

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000439692.1\|407988_408450_+	ComE operon protein 2	A7KUY9	Bacillus_phage	3.6e-35	58.8
WP_160193973.1\|408508_410635_+	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	1.5e-32	32.6
WP_001282570.1\|410691_411666_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_001274017.1\|411710_411962_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_000368338.1\|412307_414131_+	elongation factor 4	A0A1S5SF82	Streptococcus_phage	6.1e-22	25.1

DBSCAN-SWA_28

417566 : 420674

Micromonas_pusilla_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000034716.1\|417566_419399_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.4e-137	46.5
WP_001119020.1\|419534_420674_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	6.8e-27	26.5

DBSCAN-SWA_29

427143 : 428091

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001117769.1\|427143_428091_+	PhoH family protein	L7TP00	Rhizobium_phage	4.9e-47	46.8

DBSCAN-SWA_30

431145 : 444873

Klosneuvirus(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001030080.1\|431145_432537_-\|tRNA	glycine--tRNA ligase	A0A1V0SIF1	Klosneuvirus	4.7e-46	27.4
WP_001794939.1\|432871_433495_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000411298.1\|433505_434324_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_001217253.1\|434384_436184_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-54	36.0
WP_001283055.1\|436407_437514_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624581.1\|437644_438322_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683921.1\|438324_439425_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
WP_001062173.1\|439538_440885_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	1.4e-55	34.0
WP_000924211.1\|440894_441785_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001213908.1\|441910_442696_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000564316.1\|442737_443601_+	metal ABC transporter permease	NA	NA	NA	NA
WP_001095260.1\|443587_443998_+	transcriptional repressor	NA	NA	NA	NA
WP_000863556.1\|444273_444873_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	9.2e-60	54.7

DBSCAN-SWA_31

451045 : 451669

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223008.1\|451045_451669_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.6e-30	37.1

DBSCAN-SWA_32

457213 : 460025

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019697.1\|457213_458560_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	2.1e-64	39.9
WP_000202178.1\|458552_460025_+	glycine dehydrogenase subunit 2	E3SN07	Prochlorococcus_phage	1.4e-80	41.1

DBSCAN-SWA_33

467545 : 474115

Indivirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001286928.1\|467545_468883_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.6e-43	37.7
WP_000159866.1\|468875_469106_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_160193860.1\|469083_469965_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	7.6e-10	25.8
WP_001124985.1\|470395_470848_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_000942216.1\|470863_472543_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001291540.1\|472693_474115_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	6.6e-40	26.3

DBSCAN-SWA_34

480943 : 482350

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000193707.1\|480943_482350_+	NADP-dependent phosphogluconate dehydrogenase	A0A222YX62	Synechococcus_phage	4.3e-31	31.1

DBSCAN-SWA_35

489697 : 491182

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000105070.1\|489697_491182_-	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	2.4e-80	37.8

DBSCAN-SWA_36

496846 : 587448

111

Staphylococcus_phage(73.75%)

capsid,portal,plate,tRNA,integrase,holin,tail,terminase,protease,head

attL 506140:506168|attR 551641:551669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000447733.1\|496846_497734_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.6e-37	31.1
WP_001183424.1\|497811_498318_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_000273367.1\|498409_499141_+	segregation and condensation protein A	NA	NA	NA	NA
WP_000368652.1\|499133_499676_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_000159577.1\|499668_500406_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_000064078.1\|500538_501264_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-45	43.0
WP_000987777.1\|501244_502996_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
WP_001574168.1\|503247_504180_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001794062.1\|504166_506209_+	hypothetical protein	B5WZK7	Staphylococcus_phage	1.1e-38	44.1
506140:506168	attL	NA	NA	NA	NA
WP_000264751.1\|506251_507457_-\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
WP_000191466.1\|507582_508197_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
WP_001013104.1\|508193_508340_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
WP_000705240.1\|508376_508559_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_000511090.1\|508628_509360_-	helix-turn-helix transcriptional regulator	S4SVC5	Staphylococcus_phage	1.3e-132	99.2
WP_000213811.1\|509511_509724_+	helix-turn-helix transcriptional regulator	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
WP_000435357.1\|509771_510215_+	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
WP_000362644.1\|510419_510632_-	hypothetical protein	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
WP_001148860.1\|510701_510899_+	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
WP_000773059.1\|510885_511266_-	DUF2513 domain-containing protein	Q4ZCQ5	Staphylococcus_virus	5.8e-68	100.0
WP_001025401.1\|511332_511578_+	DUF2829 domain-containing protein	A0A2I6PF15	Staphylococcus_phage	5.1e-41	100.0
WP_001128433.1\|511546_511912_-	hypothetical protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
WP_001097553.1\|511966_512182_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.2e-30	98.6
WP_001124160.1\|512206_512470_+	helix-turn-helix domain-containing protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
WP_001285954.1\|512481_512643_+	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	8.6e-21	100.0
WP_000174998.1\|512721_513045_+	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
WP_000279448.1\|513059_513422_+	hypothetical protein	A0A0K1LKE9	Staphylococcus_phage	3.0e-53	96.7
WP_000762531.1\|513418_514585_+	DUF2800 domain-containing protein	A0A0K1LKE3	Staphylococcus_phage	2.4e-221	99.7
WP_000645045.1\|514610_515168_+	DUF2815 family protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
WP_078066095.1\|515236_517189_+	DNA polymerase	A0A2I6PF18	Staphylococcus_phage	0.0e+00	99.4
WP_000152769.1\|517200_517356_+	hypothetical protein	A0A2I6PDP0	Staphylococcus_phage	3.5e-19	94.1
WP_000029382.1\|517541_517901_+	hypothetical protein	Q4ZBU0	Staphylococcus_virus	1.2e-59	95.8
WP_000022728.1\|517900_518158_+	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
WP_000235326.1\|518160_518361_+	hypothetical protein	C5I650	Staphylococcus_phage	7.4e-30	98.5
WP_000178424.1\|518369_518618_+	hypothetical protein	A0A2I6PF06	Staphylococcus_phage	1.6e-37	92.7
WP_001062709.1\|518632_519025_+	hypothetical protein	A0A2I6PE39	Staphylococcus_phage	1.6e-68	100.0
WP_000615883.1\|519212_519644_+	hypothetical protein	Q4ZBT4	Staphylococcus_virus	1.4e-73	98.6
WP_001065240.1\|519636_519885_+	DUF1024 family protein	A0A2I6PEP2	Staphylococcus_phage	5.0e-36	92.7
WP_000181812.1\|519877_520405_+	dUTP pyrophosphatase	A0A2I6PF13	Staphylococcus_phage	1.5e-93	98.9
WP_001106583.1\|520441_520687_+	hypothetical protein	Q9B0F1	Staphylococcus_virus	1.6e-31	100.0
WP_001034430.1\|520683_520884_+	hypothetical protein	NA	NA	NA	NA
WP_001199737.1\|520883_521117_+	DUF1381 domain-containing protein	Q9B0F0	Staphylococcus_virus	3.1e-35	100.0
WP_000483477.1\|521141_521378_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
WP_000595272.1\|521370_521523_+	transcriptional activator RinB	Q9B0E9	Staphylococcus_virus	2.6e-19	100.0
WP_000265258.1\|521590_521791_+	DUF1514 domain-containing protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
WP_095284851.1\|523234_524290_+	hypothetical protein	A0A0K1LKN1	Staphylococcus_phage	1.8e-207	99.4
WP_015978074.1\|524392_524497_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
WP_000665205.1\|524630_524921_+	VRR-NUC domain-containing protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
WP_078065359.1\|524901_526269_+	DEAD/DEAH box helicase	A0A2I6PDQ0	Staphylococcus_phage	1.9e-262	99.3
WP_000513700.1\|526281_526719_+	transcriptional regulator	A0A2I6PDC2	Staphylococcus_phage	7.9e-77	99.3
WP_000196700.1\|526880_527195_+	HNH endonuclease	A0A2I6PDR3	Staphylococcus_phage	8.5e-57	100.0
WP_000778930.1\|527324_527630_+\|terminase	terminase	A0A2I6PDN6	Staphylococcus_phage	3.7e-49	100.0
WP_000153549.1\|527619_529311_+\|terminase	terminase large subunit	A0A2I6PDP8	Staphylococcus_phage	0.0e+00	99.8
WP_001100670.1\|529315_530554_+\|portal	phage portal protein	A0A2I6PEA6	Staphylococcus_phage	6.9e-235	100.0
WP_000061866.1\|530537_531311_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
WP_001142735.1\|531322_532486_+\|capsid	phage major capsid protein	A0A2I6PE62	Staphylococcus_phage	3.6e-217	100.0
WP_000050975.1\|532554_532833_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PE36	Staphylococcus_phage	2.1e-46	100.0
WP_000395501.1\|532844_533177_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	6.2e-58	100.0
WP_000110020.1\|533173_533575_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
WP_001023802.1\|533575_533971_+	DUF3168 domain-containing protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
WP_000807540.1\|534005_534647_+\|tail	tail protein	A0A2I6PE59	Staphylococcus_phage	1.0e-120	100.0
WP_000169127.1\|534738_535194_+	Ig domain-containing protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
WP_000589167.1\|535251_535602_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
WP_000438833.1\|535643_535802_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
WP_160193863.1\|535815_542016_+\|tail	phage tail tape measure protein	A0A2I6PF36	Staphylococcus_phage	0.0e+00	99.2
WP_160193865.1\|542015_542840_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	9.2e-159	99.6
WP_000384474.1\|542848_544432_+	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
WP_001670550.1\|544431_544722_+	hypothetical protein	U5U457	Staphylococcus_phage	1.3e-48	99.0
WP_000429558.1\|544737_546648_+	minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
WP_000067129.1\|546647_548114_+\|plate	BppU family phage baseplate upper protein	A0A2I6PDE3	Staphylococcus_phage	1.8e-274	100.0
WP_001166600.1\|548113_548503_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	6.4e-62	99.2
WP_000916020.1\|548495_548660_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
WP_000466784.1\|548705_549005_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_000339141.1\|549140_549443_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
WP_160193867.1\|549453_550908_+	CHAP domain-containing protein	I1W626	Staphylococcus_phage	1.3e-288	99.8
WP_000209712.1\|551629_551845_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0
551641:551669	attR	NA	NA	NA	NA
WP_000913238.1\|551934_552840_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_000476878.1\|552897_553806_+	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_001799520.1\|554010_554175_+	hypothetical protein	NA	NA	NA	NA
WP_001186908.1\|554453_554999_+	ECF transporter S component	NA	NA	NA	NA
WP_001151997.1\|555104_555353_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
WP_001163814.1\|555460_556414_+	hypothetical protein	NA	NA	NA	NA
WP_000902107.1\|556403_557783_+	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.9e-56	33.3
WP_000069298.1\|557935_559396_+	elastin-binding protein EbpS	NA	NA	NA	NA
WP_016186859.1\|559533_559620_+	hypothetical protein	NA	NA	NA	NA
WP_001174260.1\|559780_560767_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
WP_000681744.1\|560881_561850_-	asparaginase	NA	NA	NA	NA
WP_000644393.1\|561926_562586_+	(d)CMP kinase	NA	NA	NA	NA
WP_001791200.1\|562616_562733_+	hypothetical protein	NA	NA	NA	NA
WP_001791199.1\|562849_563041_+	hypothetical protein	NA	NA	NA	NA
WP_000133953.1\|563297_564473_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_000165530.1\|564694_566005_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_000161753.1\|566021_567020_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001043863.1\|567190_567463_+	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
WP_000450555.1\|567893_568466_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_000774679.1\|568468_569194_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_001819897.1\|569210_570155_+	heptaprenyl diphosphate synthase subunit II	A0A1V0SE37	Indivirus	1.3e-10	24.4
WP_000442480.1\|570246_570696_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
WP_160193869.1\|571164_572331_+	chorismate synthase	A0A291AU41	Pandoravirus	2.6e-34	32.3
WP_000776318.1\|572356_573421_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_000245891.1\|573430_574729_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000389521.1\|574735_575980_+	hypothetical protein	NA	NA	NA	NA
WP_000005208.1\|575993_576569_+	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	4.6e-08	27.2
WP_000154479.1\|576558_577146_+	DUF1405 domain-containing protein	NA	NA	NA	NA
WP_001827022.1\|577217_577898_+	zinc metallopeptidase	NA	NA	NA	NA
WP_000839927.1\|578233_578551_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_000690024.1\|578794_579937_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
WP_000361536.1\|579941_581144_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.4e-35	42.5
WP_000049917.1\|581130_582102_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_000525060.1\|582125_584819_+	ATP-dependent helicase DinG	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
WP_000858795.1\|585140_586433_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	4.3e-54	30.0
WP_000362222.1\|586761_587448_+	DnaD domain-containing protein	Q938N2	Temperate_phage	5.5e-08	32.6

DBSCAN-SWA_37

591139 : 591766

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001108885.1\|591139_591766_-	Holliday junction resolvase RecU	A0A1C8E9C3	Bacillus_phage	1.7e-24	35.5

DBSCAN-SWA_38

601230 : 602109

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001133021.1\|601230_602109_+	5'-3' exonuclease	S5M4P0	Bacillus_phage	1.4e-19	29.5

DBSCAN-SWA_39

640701 : 651158

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000282169.1\|640701_641406_-	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	1.9e-11	23.3
WP_001814377.1\|641650_641845_+	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_001165814.1\|641856_642108_+	hypothetical protein	NA	NA	NA	NA
WP_000404628.1\|642145_643270_+	virulence factor C	NA	NA	NA	NA
WP_000995290.1\|643285_643723_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA
WP_000934885.1\|644146_645103_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-167	85.2
WP_000175746.1\|645302_645782_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.0e-73	79.9
WP_000166055.1\|645796_646636_+	fatty acid kinase FakB2	A0A0N9SI50	Staphylococcus_phage	5.1e-48	76.5
WP_000159899.1\|646721_647255_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_000913317.1\|647247_647676_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_000473654.1\|647687_648188_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000801007.1\|648187_648409_+	hypothetical protein	NA	NA	NA	NA
WP_000121211.1\|648481_649429_-\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_000342154.1\|649667_651158_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.7e-22	30.5

DBSCAN-SWA_40

654566 : 656578

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000192137.1\|654566_655226_+	response regulator transcription factor ArlR	W8CYM9	Bacillus_phage	1.1e-34	33.8
WP_000166793.1\|655222_656578_+	sensor histidine kinase ArlS	A0A1V0SGX0	Hokovirus	3.5e-14	27.8

DBSCAN-SWA_41

662946 : 663738

Halovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001185421.1\|662946_663738_+	MoxR family ATPase	R4TG24	Halovirus	3.3e-12	34.2

DBSCAN-SWA_42

667273 : 672299

Lactobacillus_phage(33.33%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000138413.1\|667273_668410_-	toxic anion resistance protein	A0A291I9K4	Lactobacillus_phage	7.4e-34	28.3
WP_001794103.1\|668441_669071_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	NA	NA	NA	NA
WP_001215907.1\|669089_669359_-	acylphosphatase	NA	NA	NA	NA
WP_000269923.1\|669520_669829_+	DUF1033 family protein	NA	NA	NA	NA
WP_000809131.1\|669999_670200_+	cold-shock protein	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
WP_000876206.1\|670396_670798_+	sarA expression modulator protein Msa	NA	NA	NA	NA
WP_000216956.1\|671033_672299_-	diaminopimelate decarboxylase	A0A0P0YM38	Yellowstone_lake_phycodnavirus	4.0e-12	23.0

DBSCAN-SWA_43

680141 : 681743

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000942303.1\|680141_681743_-	ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	5.5e-51	25.7

DBSCAN-SWA_44

686168 : 689622

Indivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000079448.1\|686168_687020_+	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.8e-16	29.7
WP_000974850.1\|687026_687668_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_000077549.1\|687807_689622_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.3e-154	47.3

DBSCAN-SWA_45

693036 : 693738

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571253.1\|693036_693738_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.0e-13	29.8

DBSCAN-SWA_46

701219 : 703572

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193875.1\|701219_702002_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.2e-27	36.7
WP_000604802.1\|703005_703572_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.7e-23	31.8

DBSCAN-SWA_47

707890 : 711456

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000283027.1\|707890_709153_-	Y-family DNA polymerase	O64031	Bacillus_phage	1.7e-95	44.3
WP_001123276.1\|709300_709486_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_000277741.1\|709809_711456_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0

DBSCAN-SWA_48

720725 : 725119

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001289586.1\|720725_723128_-	DNA topoisomerase IV subunit A	A0A172JHV7	Bacillus_phage	1.1e-92	32.2
WP_001574370.1\|723127_725119_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	8.0e-116	40.5

DBSCAN-SWA_49

730736 : 732383

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001088983.1\|730736_732383_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.9e-22	24.5

DBSCAN-SWA_50

736052 : 737174

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000691309.1\|736052_737174_-	exonuclease SbcCD subunit D	A0A1X9I9U0	Staphylococcus_phage	2.1e-09	22.1

DBSCAN-SWA_51

741323 : 746979

Phage_Wrath(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001208760.1\|741323_741947_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.5e-17	63.8
WP_000380738.1\|742326_743190_-	CAP domain-containing protein	U5Q0C0	Bacillus_phage	1.2e-15	41.5
WP_001791425.1\|743263_743368_+	hypothetical protein	NA	NA	NA	NA
WP_000688127.1\|743364_744342_-	GMP reductase	Q4ZCY7	Staphylococcus_virus	8.0e-186	99.7
WP_001085657.1\|744498_744768_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_001265708.1\|745221_745371_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_000089857.1\|745461_746979_-	catalase	A0A2K9L0T1	Tupanvirus	2.7e-92	43.8

DBSCAN-SWA_52

757115 : 761391

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000841344.1\|757115_757649_-	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	3.4e-21	43.5
WP_001027143.1\|757787_757976_+	hypothetical protein	NA	NA	NA	NA
WP_000624452.1\|758088_758691_-	response regulator transcription factor	NA	NA	NA	NA
WP_000670311.1\|758687_759779_-	sensor histidine kinase	NA	NA	NA	NA
WP_000603961.1\|759782_760514_-	ABC transporter permease	NA	NA	NA	NA
WP_001794121.1\|760482_761391_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.8e-21	27.6

DBSCAN-SWA_53

765345 : 791313

Staphylococcus_phage(63.64%)

transposase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077670291.1\|765345_765681_-\|head	phage head morphogenesis protein	A0A1J0MFV1	Staphylococcus_phage	2.6e-27	60.4
WP_000600810.1\|765748_765886_-	hypothetical protein	NA	NA	NA	NA
WP_001574384.1\|765882_766149_-	hypothetical protein	NA	NA	NA	NA
WP_000429703.1\|766194_766473_-	hypothetical protein	NA	NA	NA	NA
WP_000906224.1\|766623_766872_-	hypothetical protein	NA	NA	NA	NA
WP_001217295.1\|767628_767823_-	hypothetical protein	NA	NA	NA	NA
WP_001791418.1\|767833_768007_-	hypothetical protein	NA	NA	NA	NA
WP_001794746.1\|768675_768993_-	hypothetical protein	NA	NA	NA	NA
WP_001791415.1\|769227_769356_-	hypothetical protein	NA	NA	NA	NA
WP_000905625.1\|769420_769618_-	hypothetical protein	NA	NA	NA	NA
WP_077670290.1\|769619_770285_-\|capsid	phage capsid protein	A0A1J0MF61	Staphylococcus_phage	4.6e-60	53.0
WP_000585095.1\|770345_770597_-	hypothetical protein	NA	NA	NA	NA
WP_000477487.1\|772117_772534_-	hypothetical protein	NA	NA	NA	NA
WP_000121213.1\|772960_773908_+\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.6e-183	99.7
WP_000006110.1\|774119_774305_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_000121211.1\|774389_775337_-\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_031788482.1\|775771_775882_-	hypothetical protein	NA	NA	NA	NA
WP_001002343.1\|776583_776790_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.9e-12	56.7
WP_001071312.1\|777086_777299_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.6e-19	72.5
WP_000134547.1\|777984_778269_+	hypothetical protein	NA	NA	NA	NA
WP_000805733.1\|778419_778740_+	DUF961 domain-containing protein	NA	NA	NA	NA
WP_000386891.1\|778753_779056_+	hypothetical protein	NA	NA	NA	NA
WP_000388596.1\|779297_780323_+	replication initiation factor domain-containing protein	NA	NA	NA	NA
WP_000692007.1\|780383_781439_+	conjugal transfer protein	NA	NA	NA	NA
WP_000015642.1\|781443_781704_+	hypothetical protein	NA	NA	NA	NA
WP_000358146.1\|781715_782099_+	hypothetical protein	NA	NA	NA	NA
WP_117221260.1\|782133_784386_+	DUF87 domain-containing protein	NA	NA	NA	NA
WP_001251205.1\|784439_785798_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	4.0e-42	29.9
WP_000681139.1\|785802_787650_+	membrane protein	NA	NA	NA	NA
WP_000247474.1\|787639_788686_+	CHAP domain-containing protein	A0A1X9I9L1	Staphylococcus_phage	8.1e-19	36.9
WP_000810443.1\|788692_789283_+	hypothetical protein	NA	NA	NA	NA
WP_001255381.1\|789338_789695_+	cystatin-like fold lipoprotein	NA	NA	NA	NA
WP_000746372.1\|789803_790307_+\|transposase	transposase	NA	NA	NA	NA
WP_078367270.1\|790287_790824_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.3e-28	43.6
WP_001659797.1\|791115_791313_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4

DBSCAN-SWA_54

796384 : 796861

Fowlpox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000448078.1\|796384_796861_+	glutathione peroxidase	Q70H87	Fowlpox_virus	1.2e-22	38.0

DBSCAN-SWA_55

802804 : 809286

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001103747.1\|802804_803623_-	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	3.1e-26	35.1
WP_001077635.1\|804097_804640_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_000516249.1\|804645_806655_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.1e-59	30.2
WP_160193877.1\|806667_809286_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.9e-41	23.7

DBSCAN-SWA_56

818699 : 819743

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368166.1\|818699_819743_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	9.3e-124	69.2

DBSCAN-SWA_57

823942 : 829486

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000664777.1\|823942_825229_-	insulinase family protein	G3MBJ8	Bacillus_virus	6.7e-15	27.9
WP_000089941.1\|825228_826494_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.2e-40	26.8
WP_001293307.1\|826524_827238_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_042907377.1\|827242_829486_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	6.9e-84	47.7

DBSCAN-SWA_58

834626 : 846441

Klosneuvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864182.1\|834626_835598_-	riboflavin biosynthesis protein RibF	A0A1V0SJE1	Klosneuvirus	1.7e-07	32.1
WP_000282296.1\|835612_836530_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_000097322.1\|836699_837050_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_000043642.1\|837436_839554_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
WP_000020856.1\|839558_839876_-	YlxQ family RNA-binding protein	NA	NA	NA	NA
WP_000727423.1\|839872_840157_-	YlxR family protein	NA	NA	NA	NA
WP_000097463.1\|840177_841353_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_000036631.1\|841373_841841_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_000139497.1\|842130_846441_-	PolC-type DNA polymerase III	A0A0A8WJ41	Clostridium_phage	3.5e-23	41.2

DBSCAN-SWA_59

850739 : 851510

Flavobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000473705.1\|850739_851510_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.3e-25	41.5

DBSCAN-SWA_60

856284 : 869755

Erwinia_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000379051.1\|856284_857688_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IDZ7	Erwinia_phage	6.4e-27	25.6
WP_000072681.1\|857753_858299_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001015609.1\|858295_859192_-	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	6.1e-31	31.9
WP_000195263.1\|859609_860917_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_001557331.1\|861072_863148_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.7e-105	39.2
WP_000672864.1\|864165_865410_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA
WP_001041658.1\|865437_866556_-	LysM peptidoglycan-binding domain-containing protein	A0A1W6JQB6	Staphylococcus_phage	9.5e-50	61.1
WP_000110252.1\|866782_867691_-	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	2.3e-17	33.2
WP_001020801.1\|867712_868879_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_000176401.1\|868987_869755_-	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	2.5e-25	44.1

DBSCAN-SWA_61

883139 : 885260

Acanthamoeba_polyphaga_mimivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043237.1\|883139_883871_-	ribonuclease III	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	5.9e-24	28.8
WP_000426914.1\|883986_884220_-	acyl carrier protein	E3SSM9	Prochlorococcus_phage	1.6e-07	63.3
WP_000167269.1\|884525_885260_-	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-17	30.3

DBSCAN-SWA_62

895619 : 897614

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000579564.1\|895619_897614_-	serine/threonine protein kinase Stk1	M1PCM5	Moumouvirus	5.5e-24	34.8

DBSCAN-SWA_63

900761 : 901697

Prochlorococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000161291.1\|900761_901697_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	4.7e-10	28.0

DBSCAN-SWA_64

906706 : 908963

Methanothermobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000722165.1\|906706_907906_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.2e-42	32.9
WP_000933956.1\|908121_908340_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_000368225.1\|908339_908963_-	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	6.1e-22	34.1

DBSCAN-SWA_65

912277 : 912889

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001040248.1\|912277_912889_-	orotate phosphoribosyltransferase	S4VS55	Pandoravirus	1.6e-27	33.8

DBSCAN-SWA_66

916856 : 921467

Halovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193880.1\|916856_917957_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	9.6e-63	36.7
WP_000767018.1\|917958_919233_-	dihydroorotase	NA	NA	NA	NA
WP_001016166.1\|919250_920132_-	aspartate carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.6e-31	33.9
WP_001178615.1\|920159_921467_-	uracil transporter	Q9KX94	Enterobacteria_phage	3.3e-54	34.0

DBSCAN-SWA_67

926398 : 929152

Orpheovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000384706.1\|926398_929152_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	2.1e-90	28.0

DBSCAN-SWA_68

948508 : 948706

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001245800.1\|948508_948706_-	hypothetical protein	A0A0K1LL29	Staphylococcus_phage	1.2e-19	85.2

DBSCAN-SWA_69

959561 : 959789

Staphylococcus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001801391.1\|959561_959789_-	hypothetical protein	Q4ZBW5	Staphylococcus_virus	1.9e-18	67.7

DBSCAN-SWA_70

963249 : 963600

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000669541.1\|963249_963600_-	complement inhibitor SCIN-C	A7TWS0	Staphylococcus_phage	1.9e-20	50.0

DBSCAN-SWA_71

975034 : 979592

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001018928.1\|975034_975349_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.6e-25	46.6
WP_001249264.1\|975521_977870_-	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	7.2e-15	25.1
WP_000161937.1\|977879_979592_-	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	6.8e-15	24.0

DBSCAN-SWA_72

984470 : 985529

Orpheovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003566.1\|984470_985529_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5

DBSCAN-SWA_73

997508 : 1000419

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000401377.1\|997508_997991_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
WP_001263793.1\|997992_998535_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_000814565.1\|998604_998994_+	hypothetical protein	NA	NA	NA	NA
WP_001049150.1\|998996_999251_-	YlbG family protein	NA	NA	NA	NA
WP_000757584.1\|999489_1000419_+	glycerophosphodiester phosphodiesterase	M1I1K8	Paramecium_bursaria_Chlorella_virus	6.5e-12	26.2

DBSCAN-SWA_74

1022060 : 1025703

Mycoplasma_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000433551.1\|1022060_1023155_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-37	44.3
WP_001020627.1\|1023167_1023707_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000455584.1\|1023850_1024126_-	UPF0223 family protein	NA	NA	NA	NA
WP_000260117.1\|1024296_1025703_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-46	29.1

DBSCAN-SWA_75

1030344 : 1030896

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000957036.1\|1030344_1030896_+	peptide deformylase	E3SLL2	Synechococcus_phage	1.6e-13	42.2

DBSCAN-SWA_76

1037010 : 1041390

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001289622.1\|1037010_1037244_+	glutaredoxin family protein	G3MBF0	Bacillus_virus	1.3e-09	38.7
WP_000040041.1\|1037480_1039199_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_000437472.1\|1039201_1039468_-	phosphocarrier protein HPr	NA	NA	NA	NA
WP_000505964.1\|1039621_1040164_-	hypothetical protein	NA	NA	NA	NA
WP_000685075.1\|1040217_1041390_-	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.5e-74	42.6

DBSCAN-SWA_77

1044569 : 1059332

Prochlorococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000921981.1\|1044569_1045970_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-10	25.7
WP_000273254.1\|1045962_1046769_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_001101912.1\|1047036_1048284_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_000709288.1\|1048305_1049784_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	9.2e-77	51.5
WP_000238673.1\|1049798_1050365_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.6e-29	40.1
WP_000030814.1\|1050367_1051396_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.6e-62	41.4
WP_000483716.1\|1051388_1052873_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.5e-46	31.4
WP_160193884.1\|1052851_1055041_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.7e-140	39.2
WP_000666808.1\|1055033_1055705_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000848351.1\|1055706_1055970_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174050.1\|1055969_1056674_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	41.6
WP_001010391.1\|1056677_1057802_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861576.1\|1057788_1058271_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
WP_000225845.1\|1058471_1059332_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.2e-39	38.8

DBSCAN-SWA_78

1069569 : 1073343

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001074519.1\|1069569_1073343_+	bifunctional autolysin	A0A1J0MFB0	Staphylococcus_phage	1.1e-54	38.0

DBSCAN-SWA_79

1077009 : 1107356

Staphylococcus_phage(16.67%)

holin,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000676568.1\|1077009_1078083_+	Glu-specific serine endopeptidase SspA	A0A2H4PQP7	Staphylococcus_phage	1.1e-15	31.7
WP_001088791.1\|1078164_1079346_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
WP_000284455.1\|1079383_1079713_+	staphostatin B	NA	NA	NA	NA
WP_000184947.1\|1079948_1080770_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_000150205.1\|1080762_1081566_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_000526678.1\|1081552_1083226_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_001814117.1\|1083212_1084424_-	isochorismate synthase	NA	NA	NA	NA
WP_072357920.1\|1084527_1084605_-	hypothetical protein	NA	NA	NA	NA
WP_000070967.1\|1084755_1085694_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000620943.1\|1085745_1086297_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001794164.1\|1086386_1086677_+	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	2.6e-07	38.0
WP_001794249.1\|1086740_1086872_+	hypothetical protein	NA	NA	NA	NA
WP_001081338.1\|1086918_1087878_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000766009.1\|1088368_1088725_+	DoxX family protein	NA	NA	NA	NA
WP_000719183.1\|1088813_1090295_-	glycosyltransferase	NA	NA	NA	NA
WP_000410718.1\|1090300_1090588_-	hypothetical protein	NA	NA	NA	NA
WP_001791476.1\|1090928_1091219_+	hypothetical protein	NA	NA	NA	NA
WP_000571191.1\|1091306_1091948_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-19	33.7
WP_000873929.1\|1091944_1092265_-	YxeA family protein	NA	NA	NA	NA
WP_000870819.1\|1092267_1094232_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_001794574.1\|1094275_1094548_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_001790623.1\|1094557_1094659_-	hypothetical protein	NA	NA	NA	NA
WP_099119695.1\|1095197_1095275_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_001033867.1\|1095575_1096178_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000214898.1\|1096192_1096369_-	YkvS family protein	NA	NA	NA	NA
WP_000668820.1\|1096567_1097554_+	lipoate--protein ligase	NA	NA	NA	NA
WP_000876825.1\|1097634_1097853_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_000287265.1\|1098062_1098632_+	competence protein ComK	NA	NA	NA	NA
WP_000414169.1\|1099120_1100632_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000021872.1\|1100770_1102129_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_001794169.1\|1102145_1104470_-\|protease	serine protease	W5SAB9	Pithovirus	4.0e-10	26.8
WP_000928413.1\|1104688_1105492_-	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_001049957.1\|1105793_1107356_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2

DBSCAN-SWA_80

1128576 : 1130385

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000082722.1\|1128576_1130385_-	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	9.3e-47	24.5

DBSCAN-SWA_81

1134335 : 1148178

Bacillus_virus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193886.1\|1134335_1135982_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	9.0e-291	98.7
WP_094409958.1\|1136277_1137844_+\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_001180271.1\|1137933_1138815_-	ABC transporter permease	NA	NA	NA	NA
WP_001574526.1\|1138826_1139477_-	ABC transporter permease	NA	NA	NA	NA
WP_000427776.1\|1139469_1140450_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-16	34.1
WP_001067041.1\|1140452_1141439_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-15	30.0
WP_073392975.1\|1141489_1142959_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000121211.1\|1143073_1144021_+\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_000517177.1\|1144012_1144279_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000197096.1\|1144490_1146146_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000786746.1\|1146164_1147106_-	ABC transporter ATP-binding protein	F2Y1V6	Organic_Lake_phycodnavirus	9.3e-06	26.9
WP_000140043.1\|1147095_1148178_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-18	30.1

DBSCAN-SWA_82

1156772 : 1163583

Micromonas_sp._RCC1109_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000619360.1\|1156772_1157918_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.5e-05	26.0
WP_001047061.1\|1158028_1158898_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000353950.1\|1158956_1161566_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	5.5e-117	34.3
WP_001044234.1\|1161768_1163583_-	O-acetyltransferase	B5WZU0	Pseudomonas_phage	8.8e-37	33.9

DBSCAN-SWA_83

1166848 : 1174307

Staphylococcus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277741.1\|1166848_1168495_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
WP_000902813.1\|1168870_1169260_-	YisL family protein	NA	NA	NA	NA
WP_000670753.1\|1169585_1170488_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_000154949.1\|1170653_1174307_-	helicase-exonuclease AddAB subunit AddA	A7KV33	Bacillus_phage	7.7e-24	24.3

DBSCAN-SWA_84

1184462 : 1191456

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000185311.1\|1184462_1185392_+	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	1.8e-38	37.5
WP_000138487.1\|1185730_1186975_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_000167321.1\|1187083_1188274_-	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	1.3e-33	30.0
WP_000838047.1\|1188581_1189709_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_001067294.1\|1190070_1190448_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_000035058.1\|1190862_1191456_-	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.1e-25	41.3

DBSCAN-SWA_85

1201390 : 1205018

Mycoplasma_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193888.1\|1201390_1202866_-	leucyl aminopeptidase family protein	Q6GYZ8	Mycoplasma_phage	1.2e-47	34.9
WP_000046076.1\|1202996_1204205_-	NADH dehydrogenase	NA	NA	NA	NA
WP_001143497.1\|1204658_1205018_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	2.1e-14	38.6

DBSCAN-SWA_86

1209061 : 1211730

Pseudomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000613541.1\|1209061_1210276_-	PG:teichoic acid D-alanyltransferase DltB	A0A125RNP0	Pseudomonas_phage	8.5e-20	26.1
WP_000129645.1\|1210272_1211730_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9L3I8	Tupanvirus	4.4e-39	28.3

DBSCAN-SWA_87

1224941 : 1228464

environmental_halophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000807671.1\|1224941_1226183_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.1e-110	44.5
WP_000205572.1\|1226297_1227605_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_160193890.1\|1227702_1228464_-	Fe-S cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	5.7e-06	23.3

DBSCAN-SWA_88

1232412 : 1233438

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571209.1\|1232412_1233438_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-28	36.8

DBSCAN-SWA_89

1236547 : 1241725

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000589549.1\|1236547_1236904_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	4.7e-19	46.6
WP_001147955.1\|1237047_1237368_+	thioredoxin family protein	A0A1X9I9P5	Staphylococcus_phage	3.1e-06	36.4
WP_000422908.1\|1237517_1238057_-	nitroreductase	NA	NA	NA	NA
WP_000150036.1\|1238139_1238856_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	6.8e-17	29.7
WP_000974455.1\|1239003_1239426_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_000569884.1\|1239824_1240319_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000255545.1\|1240474_1241092_+	amino acid transporter	NA	NA	NA	NA
WP_016187137.1\|1241164_1241725_-	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.8e-31	40.9

DBSCAN-SWA_90

1245130 : 1246374

Lactococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001059082.1\|1245130_1245331_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.4e-20	70.8
WP_001574556.1\|1245687_1246374_-	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	3.8e-33	54.2

DBSCAN-SWA_91

1255848 : 1264606

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001574560.1\|1255848_1256577_+	DUF5067 domain-containing protein	H9A0X8	Staphylococcus_phage	4.8e-18	36.8
WP_000999096.1\|1256864_1257479_-	stage II sporulation protein M	NA	NA	NA	NA
WP_001085185.1\|1258444_1258909_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
WP_001050041.1\|1258930_1261303_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.9e-92	38.8
WP_001165967.1\|1261336_1262077_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_000556760.1\|1262205_1262439_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_000785248.1\|1262505_1262964_-	hypothetical protein	NA	NA	NA	NA
WP_001121760.1\|1263301_1264606_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	6.7e-196	80.7

DBSCAN-SWA_92

1275294 : 1281110

Streptococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001049165.1\|1275294_1275882_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.2e-53	55.3
WP_000006551.1\|1276450_1277395_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.1e-54	40.6
WP_001248939.1\|1277503_1278499_-	YvcK family protein	A1IMD5	Streptococcus_phage	4.8e-53	41.9
WP_000369719.1\|1278495_1279407_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	36.1
WP_000134960.1\|1280174_1281110_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.4e-84	49.2

DBSCAN-SWA_93

1285507 : 1288354

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000662687.1\|1285507_1288354_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.2

DBSCAN-SWA_94

1291672 : 1292512

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000749385.1\|1291672_1292512_-	CHAP domain-containing protein	A0A2H4J675	uncultured_Caudovirales_phage	3.5e-12	42.2

DBSCAN-SWA_95

1298950 : 1304655

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000370984.1\|1298950_1300033_-	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	1.2e-44	35.8
WP_000686342.1\|1300396_1301263_-	DegV family protein	NA	NA	NA	NA
WP_000192947.1\|1301406_1302048_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.0e-37	48.3
WP_000258151.1\|1302211_1303267_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_000460983.1\|1303584_1304655_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-16	33.5

DBSCAN-SWA_96

1313932 : 1336903

uncultured_Caudovirales_phage(35.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616865.1\|1313932_1314694_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.2e-17	30.1
WP_001245566.1\|1314690_1315647_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	5.5e-06	60.0
WP_000876311.1\|1315633_1316605_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
WP_000562498.1\|1316981_1317953_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000855505.1\|1318072_1320178_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692521.1\|1320140_1320539_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001068491.1\|1321340_1322207_+	DMT family transporter	NA	NA	NA	NA
WP_000930016.1\|1322226_1322727_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	66.2
WP_000193750.1\|1323066_1324572_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_031788440.1\|1324649_1324751_-	hypothetical protein	NA	NA	NA	NA
WP_000429002.1\|1324841_1325759_+	lipid kinase	A0A1V0SBJ0	Catovirus	8.2e-07	22.0
WP_000197262.1\|1326310_1326853_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000663016.1\|1327011_1328070_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-20	26.5
WP_000180987.1\|1328309_1329824_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_000589241.1\|1329816_1330794_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-25	33.8
WP_000983677.1\|1331014_1332796_-	DNA helicase RecQ	A0A2P1EM61	Moumouvirus	6.5e-77	37.0
WP_000525101.1\|1332807_1334691_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	8.8e-56	30.8
WP_000098285.1\|1334962_1336903_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	W6LM83	Streptococcus_phage	1.3e-110	39.5

DBSCAN-SWA_97

1340042 : 1349888

Pandoravirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217804.1\|1340042_1341194_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
WP_000604508.1\|1341177_1341771_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.8e-39	44.0
WP_000446724.1\|1342121_1342790_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000941336.1\|1342791_1343211_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062968.1\|1343214_1343928_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637686.1\|1344026_1344611_+	hypothetical protein	NA	NA	NA	NA
WP_001093552.1\|1344890_1345331_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001037807.1\|1345672_1346146_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|1346120_1346807_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244416.1\|1346806_1347862_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000702776.1\|1347933_1348917_-	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	7.3e-62	43.0
WP_000931237.1\|1349048_1349888_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.1e-56	42.3

DBSCAN-SWA_98

1357050 : 1407503

Staphylococcus_phage(33.33%)

transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001107240.1\|1357050_1357533_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_000216727.1\|1357706_1358159_-	hypothetical protein	NA	NA	NA	NA
WP_001041284.1\|1358455_1359622_-	multidrug efflux MFS transporter NorA	NA	NA	NA	NA
WP_000776010.1\|1359831_1360254_+	DNA-binding protein	NA	NA	NA	NA
WP_001191871.1\|1360440_1361058_+	DUF1361 domain-containing protein	NA	NA	NA	NA
WP_000154465.1\|1361054_1361339_+	hypothetical protein	NA	NA	NA	NA
WP_000952030.1\|1361493_1362867_-	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	1.2e-46	34.1
WP_000005632.1\|1362952_1364506_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_000180420.1\|1364788_1365076_-	hypothetical protein	NA	NA	NA	NA
WP_000435104.1\|1365110_1366019_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_000794424.1\|1366121_1367048_-	GTP-binding protein	NA	NA	NA	NA
WP_001283444.1\|1367274_1367718_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000857616.1\|1367844_1369518_-	amino acid ABC transporter ATP-binding/permease protein	W8CYL7	Bacillus_phage	2.0e-11	24.2
WP_000737163.1\|1369514_1371146_-	ABC transporter ATP-binding protein/permease	W5SAS9	Pithovirus	2.3e-12	28.2
WP_000469883.1\|1371364_1372240_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_000358501.1\|1372411_1373095_+	hypothetical protein	NA	NA	NA	NA
WP_000148821.1\|1373097_1373556_+	YaiI/YqxD family protein	NA	NA	NA	NA
WP_000820892.1\|1373557_1374124_+	TIGR00730 family Rossman fold protein	A0A1G5S9X4	Enterococcus_phage	6.1e-21	36.9
WP_000638614.1\|1374218_1374761_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000545116.1\|1374840_1375140_-	hypothetical protein	NA	NA	NA	NA
WP_000733427.1\|1375277_1375667_-	hypothetical protein	NA	NA	NA	NA
WP_001259673.1\|1375733_1376177_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000842865.1\|1376303_1376993_+	DUF1129 family protein	NA	NA	NA	NA
WP_160193892.1\|1377655_1378330_-\|transposase	IS6-like element ISSau6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.8e-113	87.9
WP_000361064.1\|1378424_1378802_+	hypothetical protein	NA	NA	NA	NA
WP_000159128.1\|1379039_1379405_+	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	8.5e-24	47.8
WP_000378396.1\|1379397_1381578_+	cadmium-translocating P-type ATPase CadA	E4ZFI9	Streptococcus_phage	9.3e-251	63.7
WP_000277738.1\|1381940_1383587_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	1.0e-289	98.4
WP_000277154.1\|1383653_1385087_-	multi-copper oxidase Mco	NA	NA	NA	NA
WP_000069452.1\|1385101_1387147_-	copper-translocating P-type ATPase CopB	E4ZFI9	Streptococcus_phage	2.3e-65	29.2
WP_000690626.1\|1387413_1387989_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.9e-42	51.7
WP_000838599.1\|1388323_1389319_-	YeiH family protein	NA	NA	NA	NA
WP_000377738.1\|1389443_1390265_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001791613.1\|1390566_1390659_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_000397995.1\|1390887_1391211_+	hypothetical protein	NA	NA	NA	NA
WP_000998976.1\|1392427_1392853_-	hypothetical protein	NA	NA	NA	NA
WP_000843733.1\|1393642_1394386_+	DUF536 domain-containing protein	NA	NA	NA	NA
WP_001002795.1\|1394935_1395031_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_000761344.1\|1395245_1395587_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000145511.1\|1395673_1396534_-	replication initiation protein	NA	NA	NA	NA
WP_000273007.1\|1396898_1397399_-	hypothetical protein	NA	NA	NA	NA
WP_001582045.1\|1397465_1397792_-	recombinase	NA	NA	NA	NA
WP_001643491.1\|1397731_1398109_-	recombinase	NA	NA	NA	NA
WP_000277741.1\|1398263_1399910_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
WP_000831610.1\|1400853_1401165_-	YxeA family protein	NA	NA	NA	NA
WP_000713732.1\|1401168_1403103_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_000726502.1\|1403177_1403471_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_000358995.1\|1403850_1404246_-	thioredoxin-dependent arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
WP_000153633.1\|1404263_1405553_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.6e-187	81.1
WP_000120605.1\|1405552_1405867_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4PQT4	Staphylococcus_phage	4.7e-39	73.1
WP_001105942.1\|1406828_1407503_-\|transposase	IS6-like element ISSau6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-113	88.4

DBSCAN-SWA_99

1412807 : 1413281

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000833480.1\|1412807_1413281_-	cupin	A0A291AU44	Pandoravirus	4.6e-14	38.7

DBSCAN-SWA_100

1418530 : 1419328

Lactobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000731642.1\|1418530_1419328_+	LysM peptidoglycan-binding domain-containing protein	C1KFN7	Lactobacillus_virus	2.1e-06	35.8

DBSCAN-SWA_101

1424049 : 1424811

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000153733.1\|1424049_1424811_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-33	35.0

DBSCAN-SWA_102

1429176 : 1430220

Acanthamoeba_polyphaga_moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001030763.1\|1429176_1430220_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	3.8e-16	27.1

DBSCAN-SWA_103

1436742 : 1437540

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001080809.1\|1436742_1437540_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-18	30.7

DBSCAN-SWA_104

1440767 : 1444726

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000817954.1\|1440767_1442495_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.7e-110	43.3
WP_000793055.1\|1442915_1444211_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.0e-14	26.9
WP_000832260.1\|1444327_1444726_-	glycerol-3-phosphate cytidylyltransferase	A0A222YWT0	Streptomyces_phage	3.2e-16	39.9

DBSCAN-SWA_105

1451659 : 1452403

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193894.1\|1451659_1452403_+	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.8e-12	29.7

DBSCAN-SWA_106

1465268 : 1465829

Streptococcus_phage(100.0%)

integrase

attL 1459422:1459436|attR 1469411:1469425

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1459422:1459436	attL	NA	NA	NA	NA
WP_001044966.1\|1465268_1465829_-\|integrase	tyrosine-type recombinase/integrase	Q7Y4J2	Streptococcus_phage	1.3e-18	31.3
WP_001044966.1\|1465268_1465829_-\|integrase	tyrosine-type recombinase/integrase	Q7Y4J2	Streptococcus_phage	1.3e-18	31.3
1469411:1469425	attR	NA	NA	NA	NA

DBSCAN-SWA_107

1478996 : 1482350

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001200748.1\|1478996_1480007_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.6e-33	27.3
WP_001788287.1\|1480505_1481027_-	hypothetical protein	NA	NA	NA	NA
WP_000180233.1\|1481054_1482350_-	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	1.2e-24	27.9

DBSCAN-SWA_108

1489880 : 1491203

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000860607.1\|1489880_1491203_+	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.2e-109	46.8

DBSCAN-SWA_109

1502507 : 1503164

Elephant_endotheliotropic_herpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000455258.1\|1502507_1503164_-	uracil-DNA glycosylase	U5U4C1	Elephant_endotheliotropic_herpesvirus	6.4e-46	46.4

DBSCAN-SWA_110

1506831 : 1510153

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000382588.1\|1506831_1508208_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	6.7e-21	23.9
WP_160193900.1\|1508752_1510153_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.5e-55	33.3

DBSCAN-SWA_111

1533453 : 1534116

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067261.1\|1533453_1534116_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	1.4e-24	37.4

DBSCAN-SWA_112

1540704 : 1541892

Emiliania_huxleyi_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000250820.1\|1540704_1541892_-	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	1.5e-45	30.6

DBSCAN-SWA_113

1544919 : 1555873

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000090315.1\|1544919_1547001_-	elongation factor G	E4ZFJ7	Streptococcus_phage	2.7e-66	28.3
WP_001137495.1\|1547123_1547594_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_001142337.1\|1547659_1548073_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_000031892.1\|1548170_1548425_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA
WP_001819727.1\|1548561_1552158_-	DNA-directed RNA polymerase subunit beta'	R4TQM7	Phaeocystis_globosa_virus	4.3e-67	24.6
WP_000918664.1\|1552321_1555873_-	DNA-directed RNA polymerase subunit beta	A0A1B1ISA9	uncultured_Mediterranean_phage	6.1e-50	24.2

DBSCAN-SWA_114

1559557 : 1564340

Bacillus_virus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001288302.1\|1559557_1560106_-	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	8.6e-12	33.5
WP_001074473.1\|1560118_1560301_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_001791441.1\|1560356_1560500_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_000872867.1\|1560614_1561184_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_000664740.1\|1561264_1561789_-	NYN domain-containing protein	NA	NA	NA	NA
WP_000390332.1\|1561788_1562535_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000370181.1\|1562542_1562947_-	Mini-ribonuclease 3	NA	NA	NA	NA
WP_000631982.1\|1562939_1564340_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.5e-55	32.0

DBSCAN-SWA_115

1570351 : 1572808

Escherichia_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000897132.1\|1570351_1572808_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	A0A1C3S747	Escherichia_phage	1.4e-133	41.2

DBSCAN-SWA_116

1586594 : 1597052

Catovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001288202.1\|1586594_1588082_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.1e-92	41.1
WP_016186812.1\|1588134_1588227_-	hypothetical protein	NA	NA	NA	NA
WP_000613720.1\|1588620_1589097_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_001154303.1\|1589093_1589459_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_000167936.1\|1589436_1590240_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	6.7e-21	29.0
WP_000057594.1\|1590455_1591388_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.7e-108	65.7
WP_000148605.1\|1591566_1592448_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_001167888.1\|1592861_1594955_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQ50	Micromonas_sp._RCC1109_virus	4.0e-110	42.7
WP_000551283.1\|1595212_1595752_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	6.5e-12	29.8
WP_001176721.1\|1595756_1597052_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A1V0SI91	Klosneuvirus	8.2e-13	24.3

DBSCAN-SWA_117

1606308 : 1608773

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000933774.1\|1606308_1607274_-	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	6.1e-45	35.4
WP_001252515.1\|1607420_1608773_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	1.1e-23	30.4

DBSCAN-SWA_118

1614657 : 1617755

Hokovirus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001051120.1\|1614657_1616631_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	3.2e-93	32.6
WP_000279925.1\|1616915_1617755_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.7e-57	45.8

DBSCAN-SWA_119

1621661 : 1622279

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272126.1\|1621661_1622279_-	dTMP kinase	M1PSC7	Streptococcus_phage	9.2e-47	48.3

DBSCAN-SWA_120

1631139 : 1632837

Streptococcus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001109044.1\|1631139_1632837_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.9e-54	42.3

DBSCAN-SWA_121

1649474 : 1655711

Lactobacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001170274.1\|1649474_1650479_-	autolysin/adhesin Aaa	A0A0A7NU10	Lactobacillus_phage	1.4e-23	41.1
WP_160193906.1\|1650812_1651655_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA
WP_000467992.1\|1651691_1652351_-	ABC transporter permease	NA	NA	NA	NA
WP_000569267.1\|1652354_1653380_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-31	37.3
WP_001036658.1\|1653670_1654813_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_000634110.1\|1654805_1655711_-	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	7.2e-48	39.4

DBSCAN-SWA_122

1679248 : 1682030

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000072632.1\|1679248_1680481_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.7e-45	35.9
WP_000028598.1\|1680473_1682030_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.7e-286	98.5

DBSCAN-SWA_123

1693460 : 1693787

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001799349.1\|1693460_1693787_+\|transposase	IS3 family transposase	A0A2H4PQU1	Staphylococcus_phage	4.3e-11	85.4

DBSCAN-SWA_124

1697150 : 1700183

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000424963.1\|1697150_1698692_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
WP_000264071.1\|1698716_1700183_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5

DBSCAN-SWA_125

1709283 : 1710807

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000930503.1\|1709283_1710807_+	alkyl hydroperoxide reductase subunit F	A0A249XZT7	Enterococcus_phage	5.5e-40	33.2

DBSCAN-SWA_126

1719532 : 1725863

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000934799.1\|1719532_1720036_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
WP_001261460.1\|1720056_1720353_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_001052483.1\|1720596_1720788_+	hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
WP_001218732.1\|1720873_1721971_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_000157348.1\|1721982_1722186_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_000373076.1\|1722215_1723097_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_001573568.1\|1723250_1724096_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.6e-12	34.4
WP_000655687.1\|1724759_1725863_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.9e-11	28.0

DBSCAN-SWA_127

1735784 : 1736627

Anomala_cuprea_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000209478.1\|1735784_1736627_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.5e-12	28.2

DBSCAN-SWA_128

1758036 : 1760771

Bodo_saltans_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000280814.1\|1758036_1759059_-	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	6.7e-10	28.1
WP_001191936.1\|1759036_1759981_-	NAD-dependent deacetylase	NA	NA	NA	NA
WP_000449073.1\|1759970_1760771_-	protein-ADP-ribose hydrolase	A0A2K9L8X2	Tupanvirus	1.5e-41	44.4

DBSCAN-SWA_129

1779008 : 1779686

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000911024.1\|1779008_1779686_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-31	39.4

DBSCAN-SWA_130

1793738 : 1798187

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000549309.1\|1793738_1798187_-	type VII secretion protein EssC	V5UPA0	Mycobacterium_phage	1.7e-28	23.7

DBSCAN-SWA_131

1808790 : 1810452

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000570080.1\|1808790_1809450_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.8e-23	32.0
WP_000736790.1\|1809501_1810452_-	glycine-glycine endopeptidase LytM	V5R8R0	Arthrobacter_phage	1.5e-16	42.7

DBSCAN-SWA_132

1819259 : 1820696

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000163995.1\|1819259_1820696_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	1.3e-30	26.0

DBSCAN-SWA_133

1827204 : 1831748

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000925396.1\|1827204_1828944_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.0e-62	31.5
WP_000608835.1\|1829209_1829884_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA
WP_000975347.1\|1830023_1831748_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.1e-11	37.4

DBSCAN-SWA_134

1838564 : 1840131

Paenibacillus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094409958.1\|1838564_1840131_+\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8

DBSCAN-SWA_135

1843280 : 1844324

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000645611.1\|1843280_1844324_-	galactitol-1-phosphate 5-dehydrogenase	E3SJ82	Synechococcus_phage	6.0e-14	24.6

DBSCAN-SWA_136

1851540 : 1853070

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000838204.1\|1851540_1853070_+	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	5.3e-11	52.0

DBSCAN-SWA_137

1862755 : 1864261

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001008395.1\|1862755_1864261_+	acyl--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.0e-39	25.9

DBSCAN-SWA_138

1875222 : 1880581

Tetraselmis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000894660.1\|1875222_1877472_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.7e-186	45.1
WP_000837114.1\|1878059_1879028_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_000127979.1\|1879024_1880581_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	5.8e-13	27.2

DBSCAN-SWA_139

1890892 : 1892951

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000818914.1\|1890892_1891990_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	1.4e-24	35.6
WP_000166911.1\|1892372_1892951_-	M23 family metallopeptidase	A0A2K9VGT1	Pontimonas_phage	1.6e-13	43.0

DBSCAN-SWA_140

1900762 : 1902355

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000067363.1\|1900762_1902355_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-22	33.6

DBSCAN-SWA_141

1918446 : 1919631

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001084444.1\|1918446_1919631_+	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	2.4e-35	29.6

DBSCAN-SWA_142

1924489 : 1934773

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000605273.1\|1924489_1931665_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.4e-68	29.9
WP_000826855.1\|1932111_1933362_-	MFS transporter	NA	NA	NA	NA
WP_000706134.1\|1933747_1934773_-	NAD-dependent formate dehydrogenase	A0A1V0SBV6	Catovirus	2.9e-29	33.9

DBSCAN-SWA_143

1938309 : 1941309

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000590840.1\|1938309_1939050_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.5e-39	40.6
WP_000171926.1\|1939391_1939904_-	DUF4242 domain-containing protein	NA	NA	NA	NA
WP_000356967.1\|1940084_1940288_+	hypothetical protein	NA	NA	NA	NA
WP_001013476.1\|1940349_1941309_-	cation transporter	A0A1V0SED0	Indivirus	2.8e-10	33.6

DBSCAN-SWA_144

1944650 : 1947135

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000723445.1\|1944650_1945796_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	3.2e-24	26.4
WP_000779509.1\|1945872_1947135_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	2.5e-22	25.5

DBSCAN-SWA_145

1954152 : 1960717

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000413167.1\|1954152_1955277_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	3.9e-128	59.6
WP_001028294.1\|1955280_1956390_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA
WP_000459062.1\|1956402_1957431_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-41	35.3
WP_000940769.1\|1957420_1959244_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	3.0e-29	29.4
WP_000565301.1\|1959263_1960028_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_000037317.1\|1960030_1960717_-	tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	8.2e-28	36.1

DBSCAN-SWA_146

1964740 : 1965916

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469818.1\|1964740_1965916_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	5.2e-30	27.9

DBSCAN-SWA_147

1971374 : 1972148

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000078278.1\|1971374_1972148_+	phosphonate ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.4e-13	26.1

DBSCAN-SWA_148

1980034 : 1980634

Bacillus_thuringiensis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000874681.1\|1980034_1980634_-	Superoxide dismutase [Mn/Fe] 2	Q56AR7	Bacillus_thuringiensis_phage	7.6e-54	50.2

DBSCAN-SWA_149

1985568 : 1990664

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001793810.1\|1985568_1986549_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	1.3e-47	37.3
WP_000414632.1\|1987871_1988498_-	MFS transporter	NA	NA	NA	NA
WP_001015549.1\|1988693_1989458_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA
WP_001223717.1\|1989461_1990664_-	staphyloferrin B biosynthesis decarboxylase SbnH	A0A2K9L4I2	Tupanvirus	5.1e-09	21.3

DBSCAN-SWA_150

1998930 : 2003140

Lactococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000570808.1\|1998930_1999911_-	2,3-diaminopropionate biosynthesis protein SbnA	A0A1W6JHY1	Lactococcus_phage	2.1e-40	35.6
WP_001045124.1\|2000141_2001134_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA
WP_000925002.1\|2001149_2002145_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA
WP_000136645.1\|2002141_2003140_+	staphyloferrin B ABC transporter permease subunit SirC	A0A2H4IY97	uncultured_Caudovirales_phage	2.6e-14	27.2

DBSCAN-SWA_151

2035186 : 2040521

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000649665.1\|2035186_2036887_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	4.1e-20	26.8
WP_001794509.1\|2037176_2037551_-	hypothetical protein	NA	NA	NA	NA
WP_000121211.1\|2037736_2038684_+\|transposase	IS30-like element ISSau1 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-184	100.0
WP_000370465.1\|2038688_2039204_-	hypothetical protein	NA	NA	NA	NA
WP_088356251.1\|2039391_2040521_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	6.4e-78	54.0

DBSCAN-SWA_152

2046401 : 2056397

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088649.1\|2046401_2047202_-	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	1.0e-37	35.9
WP_001104171.1\|2047589_2048378_-	hypothetical protein	NA	NA	NA	NA
WP_160193922.1\|2048378_2049713_-	hypothetical protein	NA	NA	NA	NA
WP_000871610.1\|2049705_2051532_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	2.1e-30	31.3
WP_000101976.1\|2051544_2052246_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-42	39.2
WP_000095328.1\|2053435_2054719_-	adenylosuccinate synthase	L7Y4J5	Megavirus	1.8e-68	34.6
WP_000375647.1\|2054996_2056397_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-111	48.1

DBSCAN-SWA_153

2063079 : 2072115

Bacillus_virus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000884337.1\|2063079_2064366_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-88	51.2
WP_000177483.1\|2064743_2066258_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	4.4e-90	38.4
WP_000449218.1\|2066583_2067396_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_000819098.1\|2067483_2070144_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.6e-119	35.8
WP_000255583.1\|2070180_2072115_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	4.4e-143	44.9

DBSCAN-SWA_154

2082202 : 2085502

Faecalibacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000742840.1\|2082202_2083042_+	nucleoid occlusion protein	A0A2K9V477	Faecalibacterium_phage	1.4e-05	23.4
WP_000491382.1\|2083536_2083890_+	DUF3147 family protein	NA	NA	NA	NA
WP_000779134.1\|2083957_2084353_+	DUF3147 family protein	NA	NA	NA	NA
WP_001054111.1\|2084605_2085175_+	helix-turn-helix transcriptional regulator	D2XQ11	Bacillus_virus	2.8e-05	34.8
WP_001059079.1\|2085301_2085502_-	cold-shock protein	Q9AZD3	Lactococcus_phage	3.4e-19	69.8

DBSCAN-SWA_155

2091295 : 2092054

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000154162.1\|2091295_2092054_-	peptide resistance ABC transporter ATP-binding subunit VraD	G9BWD6	Planktothrix_phage	9.0e-36	39.5

DBSCAN-SWA_156

2109197 : 2110910

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000138663.1\|2109197_2110910_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-20	32.0

DBSCAN-SWA_157

2116538 : 2117552

Faustovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193924.1\|2116538_2117552_+	histidinol-phosphate aminotransferase family protein	A0A1X7QHI1	Faustovirus	1.4e-07	22.9

DBSCAN-SWA_158

2129943 : 2130636

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000185860.1\|2129943_2130636_+	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	2.2e-28	38.0

DBSCAN-SWA_159

2154438 : 2158034

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094409958.1\|2154438_2156005_+\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_160193926.1\|2156174_2158034_-	amidase domain-containing protein	A0A249Y0X5	Enterococcus_phage	9.7e-15	37.3

DBSCAN-SWA_160

2183727 : 2185478

Ectocarpus_siliculosus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000143418.1\|2183727_2184615_+	sensor histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	7.4e-05	22.5
WP_000923764.1\|2184722_2185478_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-31	37.9

DBSCAN-SWA_161

2188915 : 2189413

Canarypox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001065267.1\|2188915_2189413_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	2.4e-21	33.1

DBSCAN-SWA_162

2194463 : 2196847

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001071721.1\|2194463_2196314_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.3e-234	63.9
WP_000173336.1\|2196310_2196847_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	1.1e-40	47.5

DBSCAN-SWA_163

2201723 : 2211834

Klosneuvirus(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000066521.1\|2201723_2203433_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.8e-58	32.3
WP_000011688.1\|2203710_2203923_+	hypothetical protein	NA	NA	NA	NA
WP_001028789.1\|2204202_2204646_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_001172333.1\|2204839_2206438_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	2.6e-77	36.6
WP_001793854.1\|2206497_2206698_-	hypothetical protein	NA	NA	NA	NA
WP_001130051.1\|2207124_2208621_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_001031407.1\|2208813_2209704_-	fructose bisphosphate aldolase	A0A0K0KVJ8	Prochlorococcus_phage	1.2e-07	29.2
WP_001237625.1\|2209826_2210243_-	hypothetical protein	NA	NA	NA	NA
WP_000030061.1\|2210496_2211834_+	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	6.7e-18	26.7

DBSCAN-SWA_164

2239989 : 2243189

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000751265.1\|2239989_2240691_+	lytic transglycosylase IsaA	Q4Z8Z7	Staphylococcus_phage	2.1e-39	46.8
WP_000379825.1\|2241377_2243189_+	O-acetyltransferase OatA	A0A1R3Y5Q6	Salmonella_virus	1.3e-35	31.5

DBSCAN-SWA_165

2251634 : 2256089

Acanthocystis_turfacea_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000161364.1\|2251634_2252633_+	D-lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	2.6e-35	30.2
WP_000076662.1\|2252722_2252929_-	copper chaperone CopZ	NA	NA	NA	NA
WP_000024137.1\|2253680_2256089_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.9e-128	40.8

DBSCAN-SWA_166

2265330 : 2268320

Enterobacteria_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001063330.1\|2265330_2267436_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	6.9e-118	37.5
WP_000262597.1\|2267798_2268320_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.4e-27	42.3

DBSCAN-SWA_167

2274744 : 2281127

Yellowstone_lake_phycodnavirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001062662.1\|2274744_2276484_+	pyruvate oxidase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.0e-35	24.1
WP_160193932.1\|2276783_2278850_+	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	8.3e-07	43.3
WP_000206033.1\|2279229_2279640_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_000240663.1\|2279681_2280038_+	thioredoxin family protein	NA	NA	NA	NA
WP_001228158.1\|2280158_2281127_+	alpha/beta hydrolase	A0A167RJ59	Powai_lake_megavirus	3.1e-12	26.5

DBSCAN-SWA_168

2289951 : 2290944

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000161541.1\|2289951_2290944_-	D-lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	9.7e-38	32.7

DBSCAN-SWA_169

2300360 : 2301056

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000382892.1\|2300360_2301056_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-37	37.6

DBSCAN-SWA_170

2319655 : 2326831

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000721330.1\|2319655_2320522_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.4e-79	52.6
WP_001573690.1\|2320648_2320957_-	hypothetical protein	NA	NA	NA	NA
WP_000678764.1\|2321100_2321367_-	hypothetical protein	NA	NA	NA	NA
WP_001793882.1\|2321650_2323459_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.0e-93	37.5
WP_000755954.1\|2323575_2323968_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_160193938.1\|2323969_2326831_+	DUF3427 domain-containing protein	Q5YA94	Bacillus_phage	2.6e-27	27.6

DBSCAN-SWA_171

2331274 : 2331970

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000217452.1\|2331274_2331970_+	oxidoreductase	W8CYX9	Bacillus_phage	5.1e-09	36.5

DBSCAN-SWA_172

2335153 : 2340390

Staphylococcus_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277741.1\|2335153_2336800_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0
WP_001146762.1\|2337264_2337687_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_000202030.1\|2337798_2339337_-	AbgT family transporter	NA	NA	NA	NA
WP_000824929.1\|2339571_2340390_+	SDR family oxidoreductase	L7RG25	Acanthamoeba_polyphaga_moumouvirus	1.9e-10	26.8

DBSCAN-SWA_173

2348455 : 2350013

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000173876.1\|2348455_2349271_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-14	29.8
WP_000590515.1\|2349263_2350013_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-21	31.2

DBSCAN-SWA_174

2356246 : 2360673

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000923514.1\|2356246_2356909_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.2e-17	34.5
WP_000072154.1\|2356901_2357678_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_000026190.1\|2358071_2359259_+	MFS transporter	NA	NA	NA	NA
WP_000700902.1\|2359320_2360673_-	carboxylesterase/lipase family protein	A0A0B5J865	Pandoravirus	3.0e-13	34.2

DBSCAN-SWA_175

2364066 : 2365293

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000948990.1\|2364066_2365293_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.6e-20	50.5

DBSCAN-SWA_176

2383669 : 2389876

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001176855.1\|2383669_2384812_-	glycerate kinase	W6LM47	Streptococcus_phage	2.6e-55	43.9
WP_000779351.1\|2385079_2385466_+	GtrA family protein	NA	NA	NA	NA
WP_000482647.1\|2385599_2385707_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_001064829.1\|2386354_2388118_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-35	24.7
WP_000486505.1\|2388142_2389876_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-30	25.7

DBSCAN-SWA_177

2393337 : 2399091

Staphylococcus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000971554.1\|2393337_2394453_+	pyridoxal phosphate-dependent aminotransferase family protein	V5LQ39	Emiliania_huxleyi_virus	7.1e-21	24.9
WP_000286868.1\|2394463_2395156_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA
WP_000200947.1\|2395166_2395634_+	QueT transporter family protein	NA	NA	NA	NA
WP_001056917.1\|2395685_2396663_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	A0A2H4PQH7	Staphylococcus_phage	2.4e-142	76.2
WP_000916697.1\|2396664_2397612_-	bi-component gamma-hemolysin HlgCB subunit C	A0A2I6PER8	Staphylococcus_phage	2.1e-138	77.5
WP_000594516.1\|2398161_2399091_-	bi-component gamma-hemolysin HlgAB subunit A	A0A2H4PQI5	Staphylococcus_phage	1.5e-120	71.4

DBSCAN-SWA_178

2406983 : 2407715

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000615467.1\|2406983_2407715_+	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-23	34.3

DBSCAN-SWA_179

2424579 : 2426139

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000692650.1\|2424579_2426139_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	3.4e-21	46.8

DBSCAN-SWA_180

2436870 : 2438517

Staphylococcus_virus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000277741.1\|2436870_2438517_+\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0

DBSCAN-SWA_181

2449458 : 2450493

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000655979.1\|2449458_2450493_+	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.7e-16	26.2

DBSCAN-SWA_182

2460955 : 2467512

Staphylococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000388431.1\|2460955_2461684_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.7e-28	33.2
WP_000372857.1\|2461817_2462381_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000793166.1\|2462557_2463013_-	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_000977031.1\|2463009_2463453_-	response regulator transcription factor	NA	NA	NA	NA
WP_000477322.1\|2463615_2464989_-	heme sensor histidine kinase HssS	A0A1V0SGX0	Hokovirus	1.1e-12	29.3
WP_000249492.1\|2464981_2465656_-	DNA-binding heme response regulator HssR	W8CYM9	Bacillus_phage	8.0e-52	44.7
WP_000761409.1\|2465791_2466847_+	ABC transporter permease	NA	NA	NA	NA
WP_001229922.1\|2466846_2467512_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-37	40.3

DBSCAN-SWA_183

2471249 : 2472458

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000999130.1\|2471249_2472458_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	3.0e-33	26.5

DBSCAN-SWA_184

2485114 : 2486014

Brazilian_cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000524842.1\|2485114_2486014_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.7e-15	28.2

DBSCAN-SWA_185

2493371 : 2493791

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000920241.1\|2493371_2493791_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	Q2LI91	Bacillus_phage	7.7e-37	61.9

DBSCAN-SWA_186

2499482 : 2500364

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000730056.1\|2499482_2500364_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.7e-62	46.3

DBSCAN-SWA_187

2508243 : 2508879

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000285452.1\|2508243_2508879_+	HAD family hydrolase	A7J6N1	Paramecium_bursaria_Chlorella_virus	7.1e-10	27.6

DBSCAN-SWA_188

2521883 : 2526150

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072460394.1\|2521883_2522522_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	4.5e-36	47.4
WP_000684154.1\|2523130_2524255_+	NAD(P)-binding protein	A0A2K9L3K5	Tupanvirus	1.6e-12	22.8
WP_000417008.1\|2524346_2525300_-	2-hydroxyacid dehydrogenase	A0A1V0SBV6	Catovirus	5.8e-32	29.2
WP_000737700.1\|2525658_2526150_-	CHAP domain-containing protein	A0A2R3ZXQ4	Staphylococcus_phage	2.0e-07	39.3

DBSCAN-SWA_189

2530070 : 2530880

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000717395.1\|2530070_2530880_-	CHAP domain-containing protein	A0A2R3ZXQ4	Staphylococcus_phage	9.4e-07	41.3

DBSCAN-SWA_190

2549853 : 2550459

Pithovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000913006.1\|2549853_2550459_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	3.8e-13	30.6

DBSCAN-SWA_191

2562426 : 2565594

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000592290.1\|2562426_2565594_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.3e-63	22.0

DBSCAN-SWA_192

2588773 : 2592383

Paenibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094409958.1\|2588773_2590341_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_000389651.1\|2590716_2591526_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.4e-18	30.8
WP_000586768.1\|2591522_2592383_+	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	7.4e-10	23.9

DBSCAN-SWA_193

2595424 : 2603987

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000204271.1\|2595424_2596861_+	MarR family transcriptional regulator	A0A088F7M4	Mycobacterium_phage	5.5e-58	31.2
WP_000136272.1\|2597109_2597289_+	hypothetical protein	NA	NA	NA	NA
WP_001791584.1\|2597938_2598121_+	hypothetical protein	NA	NA	NA	NA
WP_000130145.1\|2598590_2600255_+	acetolactate synthase AlsS	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.7e-45	25.9
WP_000179061.1\|2600291_2600996_+	acetolactate decarboxylase	NA	NA	NA	NA
WP_000769709.1\|2601386_2601812_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000044369.1\|2602106_2602922_+	hydrolase	NA	NA	NA	NA
WP_001044451.1\|2603132_2603987_+	M23 family metallopeptidase	E5G070	Clostridium_phage	1.3e-06	34.8

DBSCAN-SWA_194

2607365 : 2610428

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001015495.1\|2607365_2608214_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.3e-43	38.4
WP_001573519.1\|2608434_2608560_+	hypothetical protein	NA	NA	NA	NA
WP_001293423.1\|2608514_2608808_+	hypothetical protein	NA	NA	NA	NA
WP_000333457.1\|2608821_2609430_+	DUF3885 domain-containing protein	NA	NA	NA	NA
WP_001573518.1\|2609687_2610428_-	NAD-dependent protein deacylase	A0A2I2L319	Orpheovirus	7.3e-14	30.3

DBSCAN-SWA_195

2616748 : 2619815

Pandoravirus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000169223.1\|2616748_2618161_+	6-phospho-beta-galactosidase	A0A0B5JD41	Pandoravirus	5.0e-48	28.9
WP_094409958.1\|2618247_2619815_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8

DBSCAN-SWA_196

2623792 : 2625355

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000792332.1\|2623792_2625355_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	3.5e-18	24.6

DBSCAN-SWA_197

2635558 : 2636527

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989088.1\|2635558_2636527_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-15	28.8

DBSCAN-SWA_198

2652327 : 2653236

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000162591.1\|2652327_2653236_+	arginase	A0A1V0SJM8	Klosneuvirus	1.2e-26	32.7

DBSCAN-SWA_199

2670478 : 2677896

Paramecium_bursaria_Chlorella_virus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000334466.1\|2670478_2672284_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	2.6e-97	38.6
WP_000908186.1\|2672515_2673298_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.7e-09	30.1
WP_000370937.1\|2673365_2674223_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_001792784.1\|2674881_2675040_-	hypothetical protein	NA	NA	NA	NA
WP_073392962.1\|2675719_2675824_+	hypothetical protein	NA	NA	NA	NA
WP_000277741.1\|2676249_2677896_-\|transposase	IS1182-like element ISSau3 family transposase	A0ZS58	Staphylococcus_virus	3.5e-295	100.0

DBSCAN-SWA_200

2686402 : 2691898

Clostridium_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000070866.1\|2686402_2686846_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	5.6e-38	53.7
WP_094409958.1\|2686951_2688519_-\|transposase	IS3-like element ISSau2 family transposase	A0A0C5AEA5	Paenibacillus_phage	1.0e-49	51.8
WP_000160304.1\|2688629_2689340_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_001083335.1\|2689654_2690317_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_001242308.1\|2690596_2691898_+	pyrimidine-nucleoside phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.4e-132	58.7

DBSCAN-SWA_201

2699831 : 2701442

Only_Syngen_Nebraska_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000159960.1\|2699831_2701442_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.7e-146	49.6

DBSCAN-SWA_202

2709245 : 2716998

Bacillus_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000273356.1\|2709245_2709845_+	thymidine kinase	G3MBK1	Bacillus_virus	6.2e-32	42.9
WP_000460244.1\|2709845_2710922_+	peptide chain release factor 1	NA	NA	NA	NA
WP_000248730.1\|2710908_2711745_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_001801520.1\|2711777_2712875_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.6e-41	35.6
WP_000697334.1\|2712871_2713291_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA
WP_000654191.1\|2713397_2713922_+	TIGR01440 family protein	NA	NA	NA	NA
WP_160193965.1\|2713948_2715187_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.2e-103	53.0
WP_000048712.1\|2715214_2715844_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_000723407.1\|2715867_2716998_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.0e-27	31.1

DBSCAN-SWA_203

2727714 : 2728110

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000932696.1\|2727714_2728110_+	single-stranded DNA-binding protein	A0A1B1PAE7	Bacillus_phage	3.0e-14	36.8

DBSCAN-SWA_204

2734219 : 2734867

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187612.1\|2734219_2734867_-	HD domain-containing protein	H2ED17	Moumouvirus	4.7e-09	27.0

DBSCAN-SWA_205

2743059 : 2744580

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001178940.1\|2743059_2744580_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.0e-58	33.9

DBSCAN-SWA_206

2750254 : 2752282

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160193966.1\|2750254_2752282_+	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.1e-24	23.6

DBSCAN-SWA_207

2757432 : 2760816

Clostridium_botulinum_C_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000621176.1\|2757432_2757795_+	type II toxin-antitoxin system PemK/MazF family toxin	Q332J9	Clostridium_botulinum_C_phage	4.2e-07	32.8
WP_000390829.1\|2758143_2759145_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA
WP_160193968.1\|2759263_2759590_+	anti-sigma factor antagonist	NA	NA	NA	NA
WP_001190825.1\|2759591_2760071_+	anti-sigma B factor RsbW	NA	NA	NA	NA
WP_001041107.1\|2760045_2760816_+	RNA polymerase sigma factor SigB	A0A0A0RNH9	Bacillus_phage	1.3e-21	34.9

DBSCAN-SWA_208

2774929 : 2779653

Micromonas_sp._RCC1109_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000094572.1\|2774929_2776459_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	9.4e-08	28.6
WP_072399972.1\|2776488_2777508_-	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_000196911.1\|2777629_2777884_-	ACT domain-containing protein	NA	NA	NA	NA
WP_000047828.1\|2777883_2779653_-	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.1e-63	30.1

DBSCAN-SWA_209

2783413 : 2797488

Moraxella_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000159047.1\|2783413_2784439_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.1e-63	40.9
WP_000106312.1\|2784752_2786363_-	MutS family DNA mismatch repair protein	A0A0N9R0S5	Chrysochromulina_ericina_virus	5.1e-20	27.4
WP_001791590.1\|2786457_2786586_+	hypothetical protein	NA	NA	NA	NA
WP_000602046.1\|2786730_2788659_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	3.2e-53	30.1
WP_001283612.1\|2788911_2789547_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_073392939.1\|2789903_2790932_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_000581078.1\|2790991_2791216_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_001052261.1\|2791424_2792675_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	9.0e-41	31.2
WP_000790325.1\|2792858_2793809_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_001791588.1\|2793957_2795442_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	5.2e-19	25.8
WP_001253292.1\|2795438_2796398_+	carbohydrate kinase	NA	NA	NA	NA
WP_160193969.1\|2796771_2797488_-	response regulator transcription factor	A0A2H4J4Z6	uncultured_Caudovirales_phage	2.3e-25	32.6

DBSCAN-SWA_210

2804628 : 2818972

Staphylococcus_phage(68.42%)

terminase,integrase,coat

attL 2806588:2806607|attR 2821322:2821341

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000917289.1\|2804628_2804913_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000240651.1\|2804988_2806605_+	chaperonin GroEL	A0A240F779	uncultured_virus	2.6e-157	54.7
2806588:2806607	attL	NA	NA	NA	NA
WP_000179345.1\|2806673_2807846_-\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	3.5e-220	98.2
WP_000620857.1\|2807859_2808534_-	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
WP_000153640.1\|2808706_2808925_+	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
WP_000481967.1\|2808929_2809247_+	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
WP_000708433.1\|2809243_2809399_+	hypothetical protein	NA	NA	NA	NA
WP_001231378.1\|2809383_2809587_+	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	7.5e-30	97.0
WP_000403839.1\|2809588_2809972_+	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	9.7e-63	96.1
WP_001103930.1\|2809972_2810290_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	1.6e-18	58.2
WP_001002721.1\|2810353_2811223_+	hypothetical protein	Q4ZE74	Staphylococcus_phage	6.0e-169	99.3
WP_000447451.1\|2811236_2812946_+	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	0.0e+00	100.0
WP_000356937.1\|2813257_2813638_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	6.9e-69	100.0
WP_001019766.1\|2813634_2814276_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	3.5e-113	94.8
WP_001190608.1\|2814811_2815153_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	7.1e-57	98.2
WP_000846285.1\|2815164_2815743_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.4e-28	38.4
WP_000448775.1\|2815760_2815979_+	hypothetical protein	NA	NA	NA	NA
WP_000771368.1\|2816029_2816557_+\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
WP_000358778.1\|2816559_2816901_+	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
WP_001293073.1\|2816897_2817467_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	3.5e-101	98.4
WP_001035597.1\|2817621_2818326_-	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA
WP_000812237.1\|2818744_2818972_+	hypothetical protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.9e-13	47.4
2821322:2821341	attR	NA	NA	NA	NA

DBSCAN-SWA_211

2822056 : 2822684

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001573769.1\|2822056_2822353_+	hypothetical protein	C8CH40	Staphylococcus_phage	6.7e-11	40.4
WP_001573771.1\|2822342_2822684_+	hypothetical protein	C8CH40	Staphylococcus_phage	4.1e-20	46.0

DBSCAN-SWA_212

2826662 : 2847406

Staphylococcus_phage(100.0%)

integrase

attL 2818488:2818504|attR 2840021:2840037

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2818488:2818504	attL	NA	NA	NA	NA
WP_000791402.1\|2826662_2827718_+	succinyl-diaminopimelate desuccinylase	A0A2I6PER8	Staphylococcus_phage	7.9e-38	34.6
WP_000595617.1\|2827739_2828759_+	beta-channel forming cytolysin	A0A2I6PEU3	Staphylococcus_phage	3.4e-54	39.6
WP_000857191.1\|2829898_2830936_-\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
WP_000825947.1\|2830994_2831459_-	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
WP_000705248.1\|2831558_2831741_-	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
WP_000591749.1\|2831944_2832286_-	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000759682.1\|2832291_2833224_-	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_001031454.1\|2833239_2833953_-	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000854072.1\|2834084_2834348_+	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
WP_001025874.1\|2834363_2834579_+	DUF2829 domain-containing protein	A0EWV9	Staphylococcus_phage	6.3e-35	100.0
WP_000128907.1\|2834567_2834897_-	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
WP_001148605.1\|2834947_2835700_+	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
WP_160193971.1\|2835715_2835913_+	hypothetical protein	Q8SDM8	Staphylococcus_phage	2.8e-29	92.3
WP_000939496.1\|2835943_2836084_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_000275058.1\|2836098_2836731_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_001120197.1\|2836789_2837110_+	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
WP_000066017.1\|2837106_2837268_+	DUF1270 domain-containing protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
WP_000165375.1\|2837362_2837689_+	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.2e-53	100.0
WP_000291503.1\|2837669_2837930_+	DUF1108 family protein	A0EWW8	Staphylococcus_phage	8.9e-44	100.0
WP_001205732.1\|2837938_2838202_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000700577.1\|2838210_2840154_+	AAA family ATPase	A0EWX0	Staphylococcus_phage	0.0e+00	100.0
2840021:2840037	attR	NA	NA	NA	NA
WP_000138472.1\|2840155_2841076_+	recombinase	S4SUN6	Staphylococcus_phage	2.3e-166	100.0
WP_071621397.1\|2841156_2841774_+	MBL fold metallo-hydrolase	S4SWA4	Staphylococcus_phage	9.1e-87	100.0
WP_000934764.1\|2841774_2842245_+	single-stranded DNA-binding protein	A0EWX3	Staphylococcus_phage	7.4e-81	100.0
WP_000148316.1\|2842274_2843159_+	DnaD domain protein	A0EWX4	Staphylococcus_phage	5.4e-141	100.0
WP_000338531.1\|2843165_2843384_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.2e-36	98.6
WP_000101274.1\|2843714_2844083_+	hypothetical protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
WP_000131366.1\|2844086_2844329_+	hypothetical protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
WP_001793974.1\|2844334_2844508_+	hypothetical protein	A0EWX9	Staphylococcus_phage	1.2e-25	100.0
WP_001065091.1\|2844500_2844752_+	DUF1024 family protein	A0EWY0	Staphylococcus_phage	1.9e-38	100.0
WP_000028422.1\|2844741_2844924_+	hypothetical protein	A0EWY1	Staphylococcus_phage	2.6e-26	100.0
WP_000185659.1\|2844916_2845459_+	dUTP pyrophosphatase	A0EWY2	Staphylococcus_phage	1.1e-96	100.0
WP_000195803.1\|2845495_2845702_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
WP_000592207.1\|2845698_2846085_+	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
WP_000595265.1\|2846081_2846231_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000265043.1\|2846230_2846431_+	DUF1514 domain-containing protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
WP_000590122.1\|2846458_2846875_+	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_000988336.1\|2847106_2847406_+	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP047788.1|WP_031788440.1|1324649_1324751_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP047788.1|WP_031788440.1|1324649_1324751_-|hypothetical-protein

1324649_1324751_-

33 aa aa

1313932-1336903

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP047788_1	Orphan	1.2\|71451\|34\|NZ_CP047788\|CRT	71451-71484	34	1326244-1326211	2

1. spacer 1.2|71451|34|NZ_CP047788|CRT matches to NZ_CP047788 position: 1326244-1326211, mismatch: 2

atttcgaaaggaaattctacagacaatgcaagtt	CRISPR spacer
atttcgaaaagaaattctacaaacaatgcaagtt	Protospacer
*********.***********.************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047788

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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