CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047853	Staphylococcus aureus strain UP_274 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	15 crisprs	csa3,cas3,DinG,DEDDh,WYL,RT	7	6	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047852_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_1

239127-239215

Orphan

Consensus_repeat	Method
TCTGTGTTGGGGCCCTTACCCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_1

>merge|NZ_CP047852|1|239127-239215|CRISPRCasFinder
TCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTGAAAGCTGACTATTGGCCAGCTTCTGTGTTGGGGCCCTTACCCCAACTTGCA

>NZ_CP047852|1|1|239127-239215|CRISPRCasFinder
TCTGTGTTGGGGCCCTTACCCCAACTTGCA	CATTATTGAAAGCTGACTATTGGCCAGCT
TCTGTGTTGGGGCCCTTACCCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_001217124.1\|237688_238384_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP047852.1\|WP_001266157.1\|243135_243780_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP047852.1\|WP_000836465.1\|227041_227353_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP047852.1\|WP_001025061.1\|223133_224315_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP047852.1\|WP_000811163.1\|246755_247067_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047852.1\|WP_001108734.1\|224605_227020_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP047852.1\|WP_001024567.1\|245614_246691_+\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP047852.1\|WP_000411085.1\|240931_241780_+\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|130191
NZ_CP047852.1\|WP_001814569.1\|244249_245092_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814
NZ_CP047852.1\|WP_001051856.1\|238400_238823_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP047852.1\|WP_001091384.1\|247166_248024_+\|DUF1444-domain-containing-protein	unknown	unknown	gnl\|CDD\|237463
NZ_CP047852.1\|WP_000434765.1\|242329_243121_+\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|223584
NZ_CP047852.1\|WP_001050510.1\|227678_234239_+\|LPXTG-anchored-repetitive-surface-protein-SasC	unknown	unknown	gnl\|CDD\|275089
NZ_CP047852.1\|WP_000764419.1\|221510_222074_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP047852.1\|WP_001048368.1\|248052_248649_+\|DUF4479-domain-containing-protein	unknown	unknown	gnl\|CDD\|234804
NZ_CP047852.1\|WP_000265411.1\|239518_240928_+\|Mn(2+)-dependent-dipeptidase-Sapep	unknown	unknown	gnl\|CDD\|235988
NZ_CP047852.1\|WP_000004344.1\|236030_237692_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP047852.1\|WP_000285021.1\|234355_235624_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP047852.1\|WP_000526539.1\|222070_223024_-\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP047852.1\|WP_000163826.1\|245216_245528_-\|peptidase	unknown	unknown	gnl\|CDD\|227871

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_001217124.1\|237688_238384_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.60709e-94
NZ_CP047852.1\|WP_001266157.1\|243135_243780_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
NZ_CP047852.1\|WP_000836465.1\|227041_227353_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.46882e-25
NZ_CP047852.1\|WP_001025061.1\|223133_224315_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94
NZ_CP047852.1\|WP_000811163.1\|246755_247067_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24
NZ_CP047852.1\|WP_001108734.1\|224605_227020_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP047852.1\|WP_001024567.1\|245614_246691_+\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	1.89729e-152
NZ_CP047852.1\|WP_000411085.1\|240931_241780_+\|D-amino-acid-transaminase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	6.28892e-159
NZ_CP047852.1\|WP_001814569.1\|244249_245092_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.13154e-154
NZ_CP047852.1\|WP_001051856.1\|238400_238823_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000451559
NZ_CP047852.1\|WP_001091384.1\|247166_248024_+\|DUF1444-domain-containing-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	1.95778e-167
NZ_CP047852.1\|WP_000434765.1\|242329_243121_+\|phosphotransferase-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.2385e-83
NZ_CP047852.1\|WP_001050510.1\|227678_234239_+\|LPXTG-anchored-repetitive-surface-protein-SasC	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	5.6733e-112
NZ_CP047852.1\|WP_000764419.1\|221510_222074_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.38341e-67
NZ_CP047852.1\|WP_001048368.1\|248052_248649_+\|DUF4479-domain-containing-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	7.47641e-48
NZ_CP047852.1\|WP_000265411.1\|239518_240928_+\|Mn(2+)-dependent-dipeptidase-Sapep	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NZ_CP047852.1\|WP_000004344.1\|236030_237692_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.06974e-123
NZ_CP047852.1\|WP_000285021.1\|234355_235624_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP047852.1\|WP_000526539.1\|222070_223024_-\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP047852.1\|WP_000163826.1\|245216_245528_-\|peptidase	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.78628e-46

>NZ_CP047852.1|WP_001051856.1|238400_238823_+|YtxH-domain-containing-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFEEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>NZ_CP047852.1|WP_001217124.1|237688_238384_+|rRNA-pseudouridine-synthase
MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKGYISATEDHHSKTVIDLIPEYQHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>NZ_CP047852.1|WP_000004344.1|236030_237692_+|polysaccharide-biosynthesis-protein
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNVHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>NZ_CP047852.1|WP_000285021.1|234355_235624_-|NAD(P)/FAD-dependent-oxidoreductase
MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIATGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSYTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHASME
>NZ_CP047852.1|WP_001050510.1|227678_234239_+|LPXTG-anchored-repetitive-surface-protein-SasC
MNLLKKNKYSIRKYKIGIFSTLIGTVLLLSNPNGAQALTTDNNVQSDTNQATPVNSQDKDVANNRGLANSAQNTPNQSATTNQATNQALVNHNNGSIVNQATPTSVQSSTPSAQNNNHTDGNTTATETVSNANNNDVASNNTTLNVPNKTNENGSGGHLTLKEIQEDVRHSSDKPELVAIAEPASNRPKKRSRRAAPADPNATPADPGAAAAGNGGAPVAITAPYTPTTDPNANNAGQNAPNEVLSFDDNSIRPSTNRSVPSVTVVDNLPGFTLINGGKVGVLSHAMVRTSMFEAGSNRTYQAQGNVLALGRISGTDASNHGDFNGIEKSLTVNPNSELIFEFNTMPTKNGQGATNVIIKNADTNDTIAEKTVEGGPTLRLFKVPDNVRNLKIQFVPKNDAITDARGIYQLKDGYKYYSFVDSIGLHSGSHVYVERRTMEPTATNNKEFTVTTSLKNNGNSGASLDTDEFVYKIQLPEGVEYVNNSLTKDFPSNNSGVDVNDMNVTYDAANRVITIKSTGGGTTNSPARLMPDKILDLKYKLRVNNVPTPRTVTFNDTLTYKTYTQDFINSAAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNDLKKRAQTILAENRNNVPLNKRVSQADIDSLTNQMQHTLIRSVDAENAVNQKADQMEDLVNQNDELTDEEKQAAIQVIEEHKGNIIGDIGDQTTDDGVTRIKDQGIQTLSGDTATPVVKPNAKKAIRDKATKQREIINATPDATEDEIQDALNQLATDETDAIDNVTNATTNADVETAKNNGINTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKNAALNELTQATNHALEQINQATTNADVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDATQEERQAAIDKVNAAVTAANTNILNANTNADVEQVKTNAIQGIQAITPATKVKTDAKNAIDKSAETQHNTIFNNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGTQNIVVIQPATQVKTDARNVVNDKAREAITNINATPGATREEKQEAINRVNTLKNRALTDIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTNATTEEKQVALNQVDQELATAINNINQADTNEEVDQAQQLGTKAINAIQPNIVKKPAALAQINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKKANTNAEVDQAATVAENNIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAFNQINQNQTNDQVDATTNQAVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKINQKANELRAKINQDKEATAEERQVALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDSIALVAPEHIVRAAARDAVKQQYEAKKQEIEQAEHATDEEKQVALNQLANNEKLALQNINQAVTNNDVKRVETNGIATLKGVQPHIVIKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHNEKNEIREIEPVINRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSDRNKADALKAITALKLQMDEELKTARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKVKVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKVIQPAPKVCTPIKKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES
>NZ_CP047852.1|WP_000836465.1|227041_227353_+|rhodanese-like-domain-containing-protein
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>NZ_CP047852.1|WP_001108734.1|224605_227020_+|leucine--tRNA-ligase
MNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYATNPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGEPIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>NZ_CP047852.1|WP_001025061.1|223133_224315_+|MFS-transporter
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>NZ_CP047852.1|WP_000526539.1|222070_223024_-|TIGR01212-family-radical-SAM-protein
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELARRNSYQGLRYKSKVKQ
>NZ_CP047852.1|WP_000764419.1|221510_222074_-|methyltransferase-domain-containing-protein
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFICAIEKIS
>NZ_CP047852.1|WP_000265411.1|239518_240928_+|Mn(2+)-dependent-dipeptidase-Sapep
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLAEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>NZ_CP047852.1|WP_000411085.1|240931_241780_+|D-amino-acid-transaminase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>NZ_CP047852.1|WP_000434765.1|242329_243121_+|phosphotransferase-family-protein
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>NZ_CP047852.1|WP_001266157.1|243135_243780_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>NZ_CP047852.1|WP_001814569.1|244249_245092_+|MBL-fold-metallo-hydrolase
MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIITDLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVSGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIHQQYWFLFYHDQNYFAVKYSDDGENIDAYILRETLVDNN
>NZ_CP047852.1|WP_000163826.1|245216_245528_-|peptidase
MTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>NZ_CP047852.1|WP_001024567.1|245614_246691_+|M42-family-metallopeptidase
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMIQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>NZ_CP047852.1|WP_000811163.1|246755_247067_+|thioredoxin-family-protein
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>NZ_CP047852.1|WP_001091384.1|247166_248024_+|DUF1444-domain-containing-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSFRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>NZ_CP047852.1|WP_001048368.1|248052_248649_+|DUF4479-domain-containing-protein
MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE

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Crispr_ID: NZ_CP047852_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_2

296505-296590

Orphan

Consensus_repeat	Method
CCCACCCCAACTTGCATGGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_2

>merge|NZ_CP047852|2|296505-296590|CRISPRCasFinder
CCCACCCCAACTTGCATGGTCTGTAGAAATTGAGGATCCAATTTCTCTGTGTTGGGCCCCCACCCCAACTTGCATGGTCTGTAGAA

>NZ_CP047852|2|2|296505-296590|CRISPRCasFinder
CCCACCCCAACTTGCATGGTCTGTAGAA	ATTGAGGATCCAATTTCTCTGTGTTGGGCC
CCCACCCCAACTTGCATGGTCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000040063.1\|288737_289940_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP047852.1\|WP_001232648.1\|305947_307705_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_CP047852.1\|WP_000226906.1\|297816_301014_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP047852.1\|WP_000626069.1\|296854_297796_+\|pApA-hydrolase-Pde2	unknown	unknown	gnl\|CDD\|223691
NZ_CP047852.1\|WP_000634175.1\|290185_290686_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP047852.1\|WP_000883648.1\|303744_304689_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP047852.1\|WP_000777188.1\|293490_294180_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP047852.1\|WP_000471574.1\|302887_303745_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP047852.1\|WP_031775021.1\|292068_292182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000818525.1\|308052_309414_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP047852.1\|WP_000277602.1\|294484_294898_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP047852.1\|WP_000717561.1\|304957_305926_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP047852.1\|WP_000058389.1\|301463_302693_+\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_CP047852.1\|WP_000123163.1\|310931_312200_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP047852.1\|WP_000840576.1\|287702_288650_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP047852.1\|WP_000829167.1\|309761_310883_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_CP047852.1\|WP_000161676.1\|292260_293316_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP047852.1\|WP_000689998.1\|290826_291945_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP047852.1\|WP_000136257.1\|287085_287580_+\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP047852.1\|WP_000160435.1\|295102_296401_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000040063.1\|288737_289940_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP047852.1\|WP_001232648.1\|305947_307705_+\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_CP047852.1\|WP_000226906.1\|297816_301014_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP047852.1\|WP_000626069.1\|296854_297796_+\|pApA-hydrolase-Pde2	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.62686e-98
NZ_CP047852.1\|WP_000634175.1\|290185_290686_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
NZ_CP047852.1\|WP_000883648.1\|303744_304689_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP047852.1\|WP_000777188.1\|293490_294180_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.09103e-133
NZ_CP047852.1\|WP_000471574.1\|302887_303745_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP047852.1\|WP_000818525.1\|308052_309414_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP047852.1\|WP_000277602.1\|294484_294898_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
NZ_CP047852.1\|WP_000717561.1\|304957_305926_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP047852.1\|WP_000058389.1\|301463_302693_+\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP047852.1\|WP_000123163.1\|310931_312200_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP047852.1\|WP_000840576.1\|287702_288650_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	3.79172e-57
NZ_CP047852.1\|WP_000829167.1\|309761_310883_+\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_CP047852.1\|WP_000161676.1\|292260_293316_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	7.02579e-126
NZ_CP047852.1\|WP_000689998.1\|290826_291945_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP047852.1\|WP_000136257.1\|287085_287580_+\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
NZ_CP047852.1\|WP_000160435.1\|295102_296401_+\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0

>NZ_CP047852.1|WP_000160435.1|295102_296401_+|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>NZ_CP047852.1|WP_000277602.1|294484_294898_-|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>NZ_CP047852.1|WP_000777188.1|293490_294180_+|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>NZ_CP047852.1|WP_000161676.1|292260_293316_-|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGNRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>NZ_CP047852.1|WP_031775021.1|292068_292182_+|hypothetical-protein
MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLGQKFMS
>NZ_CP047852.1|WP_000689998.1|290826_291945_+|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>NZ_CP047852.1|WP_000634175.1|290185_290686_-|universal-stress-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>NZ_CP047852.1|WP_000040063.1|288737_289940_+|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>NZ_CP047852.1|WP_000840576.1|287702_288650_+|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>NZ_CP047852.1|WP_000136257.1|287085_287580_+|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>NZ_CP047852.1|WP_000626069.1|296854_297796_+|pApA-hydrolase-Pde2
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKIIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGNEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>NZ_CP047852.1|WP_000226906.1|297816_301014_+|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>NZ_CP047852.1|WP_000058389.1|301463_302693_+|NAD-dependent-malic-enzyme-4
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>NZ_CP047852.1|WP_000471574.1|302887_303745_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPNCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>NZ_CP047852.1|WP_000883648.1|303744_304689_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>NZ_CP047852.1|WP_000717561.1|304957_305926_+|ATP-dependent-6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>NZ_CP047852.1|WP_001232648.1|305947_307705_+|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>NZ_CP047852.1|WP_000818525.1|308052_309414_-|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>NZ_CP047852.1|WP_000829167.1|309761_310883_+|citrate-synthase
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>NZ_CP047852.1|WP_000123163.1|310931_312200_+|NADP-dependent-isocitrate-dehydrogenase
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVEKEGKDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK

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Crispr_ID: NZ_CP047852_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_3

382539-382620

Orphan

Consensus_repeat	Method
TTCAACAGGCAATGGAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_3

>merge|NZ_CP047852|3|382539-382620|CRISPRCasFinder
TTCAACAGGCAATGGAAGTTGGGGACGGGGCCCCAACATAGAGAATTTCGTAAAGAAATTCTACAGGCAATGGAAGTTGGGG

>NZ_CP047852|3|3|382539-382620|CRISPRCasFinder
TTCAACAGGCAATGGAAGTTGGGG	ACGGGGCCCCAACATAGAGAATTTCGTAAAGAAA
TTCTACAGGCAATGGAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000102740.1\|376299_377574_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP047852.1\|WP_160199863.1\|386381_389012_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP047852.1\|WP_000682646.1\|375365_376139_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|224100
NZ_CP047852.1\|WP_160199862.1\|373138_374905_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP047852.1\|WP_000848304.1\|391950_393219_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP047852.1\|WP_000409158.1\|380109_381252_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP047852.1\|WP_000426912.1\|389074_389335_+\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108
NZ_CP047852.1\|WP_000066091.1\|381252_382371_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP047852.1\|WP_000137775.1\|391015_391939_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP047852.1\|WP_000342266.1\|390374_391013_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP047852.1\|WP_000985882.1\|378784_379798_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP047852.1\|WP_000134779.1\|389781_390090_+\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
NZ_CP047852.1\|WP_000009237.1\|378402_378549_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000752909.1\|378180_378363_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047852.1\|WP_000704122.1\|377658_378081_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP047852.1\|WP_001283307.1\|383561_386039_+\|ATP-dependent-RecD-like-DNA-helicase	unknown	unknown	gnl\|CDD\|273632
NZ_CP047852.1\|WP_000567017.1\|382891_383560_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP047852.1\|WP_000939059.1\|389338_389767_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|223886
NZ_CP047852.1\|WP_000648617.1\|393218_393842_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP047852.1\|WP_031824596.1\|375237_375366_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000102740.1\|376299_377574_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP047852.1\|WP_160199863.1\|386381_389012_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP047852.1\|WP_000682646.1\|375365_376139_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.59061e-126
NZ_CP047852.1\|WP_160199862.1\|373138_374905_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP047852.1\|WP_000848304.1\|391950_393219_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.98972e-149
NZ_CP047852.1\|WP_000409158.1\|380109_381252_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	0
NZ_CP047852.1\|WP_000426912.1\|389074_389335_+\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	3.05024e-47
NZ_CP047852.1\|WP_000066091.1\|381252_382371_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP047852.1\|WP_000342266.1\|390374_391013_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.23148e-73
NZ_CP047852.1\|WP_000985882.1\|378784_379798_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	5.43294e-173
NZ_CP047852.1\|WP_000134779.1\|389781_390090_+\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	1.28539e-26
NZ_CP047852.1\|WP_000939059.1\|389338_389767_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|223886	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair].	3.40149e-56
NZ_CP047852.1\|WP_000752909.1\|378180_378363_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	4.22501e-07
NZ_CP047852.1\|WP_000704122.1\|377658_378081_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.58388e-46
NZ_CP047852.1\|WP_001283307.1\|383561_386039_+\|ATP-dependent-RecD-like-DNA-helicase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP047852.1\|WP_000567017.1\|382891_383560_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.6095e-16
NZ_CP047852.1\|WP_000137775.1\|391015_391939_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87045e-104
NZ_CP047852.1\|WP_000648617.1\|393218_393842_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	5.13835e-138

>NZ_CP047852.1|WP_000066091.1|381252_382371_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSNKDIRVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGKHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDVCLGGATIDDVFKNEGQLNYVV
>NZ_CP047852.1|WP_000409158.1|380109_381252_+|cysteine-desulfurase
MEIYADYAATTPVKPEVVDAMMMIYNSHYGNPSSIHAKGRDARKYLDESRRQIAQLLGADTHEIIFTSGATESNNTAIKGIVKANEQLGNHIITSKIEHHSVLHVFEQLEREGFDVTYLDVDDTGAIDLDQLEETITDKTILVSIMFVNNEVGTVQQIYDIQDIIAETNAYFHVDAVQAIGHLDVKFDEFEIDAMSITAHKFGGPKGVGALLVKDHVTLDYPQLGGEQELKRRAGTENLAQIVGMAKALQLAEKNRDDNNIHLMNLKEQFLVKLQERAIPFELNGSMTDATGHIVNLYFPFVEVETMLTLLDMAQIYVSSGSACTAGSTQPSHVLDAMFEDEERSNHSIRFSFNELTTENEINAIVAEIHKIYFKFKEES
>NZ_CP047852.1|WP_000985882.1|378784_379798_-|LLM-class-flavin-dependent-oxidoreductase
MAIKYSALNLVPIREGDDERTAINDMVKLAQHLDELSYERYWIAEHHNAPNLVSSATALLIQHTLEHTKHIRVGSGGIMLPNHAPLIVAEQFGTMATLFPNRVDLGLGRAPGTDMMTASALRRDQHDGVYKFPEEVSLLQQYFGPAHQQAYVRAYPAVGKNVPLYILGSSTDSAHLAARKGLPYVFAGHFAPQQMKEAIEIYKTLFEPSDVLDEPYVIVCLNTIVAENDDEAQYLASSMAQVMVSITRGRMQPVQPPTHELQNILTPREYAMAMERQKISLIGSENTVQQKIQDFMETYGEVNEIMAISYIYDKDMQLDSYRRFKNVINQINEKNTL
>NZ_CP047852.1|WP_000009237.1|378402_378549_+|hypothetical-protein
MSFMDKAKDAVEKFKNSDNEQVKNVKDKINEYTGSNNEEKKEKEDKEK
>NZ_CP047852.1|WP_000752909.1|378180_378363_+|CsbD-family-protein
MADESKFDQFKGNVKETVGNVTDNKELEKEGQQDKATGKAKEVVENAKNKITDAIDKLKK
>NZ_CP047852.1|WP_000704122.1|377658_378081_+|Rrf2-family-transcriptional-regulator
MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPPAQKQLWIRMRDAVRDVLDNTTLKYLAEYVDTSEDLDGYMFYI
>NZ_CP047852.1|WP_000102740.1|376299_377574_-|replication-associated-recombination-protein-A
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLLKQRP
>NZ_CP047852.1|WP_000682646.1|375365_376139_+|tRNA-threonylcarbamoyladenosine-dehydratase
MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVDASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKKLGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVVNDVLKDIPVRRIKDKGQ
>NZ_CP047852.1|WP_031824596.1|375237_375366_+|hypothetical-protein
MGLIGFNKCFLVEFWENNQSDNAKHKILSYYVLMYKSVKEVK
>NZ_CP047852.1|WP_160199862.1|373138_374905_+|aspartate--tRNA-ligase
MSKRTTYCGLVTEAFLGQEITLKGWVNNRRDLGGLIFVDLRDREGIVQVVFNPAFSEEALKIAETVRSEYVVEVQGTVTKRDPETVNPKIKTGQVEVQVTNIKVINKSETPPFSINEENVNVDENIRLKYRYLDLRRQELAQTFKMRHQITRSIRQYLDDEGFFDIETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLVMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDIEMSFVDQEDVMQMGEEMLKKVVKEVKGVEINGAFPRMTYKEAMRRYGSDKPDTRFEMELIDVSQLGRDMDFKVFKDTVENDGEIKAIVAKGAAEQYTRKDMDALTEFVNIYGAKGLAWVKVVEDGLTGPIGRFFETENVETLLTLTGAEAGDLVMFVADKPNVVAQSLGALRVKLAKELGLIDETKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKEADIAKLGTAPEEAEANAYDIVLNGYELGGGSIRIHDGELQEKMFEVLGFTKEQAQEQFGFLLDAFKYGAPPHGGIALGLDRLVMLLTNRTNLRDTIAFPKTASATCLLTNAPGEVSDKQLEELSLRIRH
>NZ_CP047852.1|WP_000567017.1|382891_383560_+|tetratricopeptide-repeat-protein
MIDQQTIYQYIQNGKIEEALQALFGNIEEDPTIIENYINAGIVLADANEIEKAERFFQKALTIDPKNGVVFYNLANVYYNQQRYQEAIKLYQQALQTEIEQVDCNYMIGMAFNQLESFKLALPYLMTAAELDKDKDAEVQFQYGLVLCQLEMFNEAITQLKHVLTIDKNHVDARYNLGLALFMKNEDIDEAITHFKEAVTIDPKHLLSQHALKTFTKMKEEE
>NZ_CP047852.1|WP_001283307.1|383561_386039_+|ATP-dependent-RecD-like-DNA-helicase
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKEMPQTKEAIISYLSSDLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLHDLGFGPKLSMAIYQFYLGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVIDLTVDVLNYQDEEVIEPEKLDEMLQYLNEEKRLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPTVVEKVVTSAVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIIPIVKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKNYFNSEDEEMLENTATNDTGASQTTIDDQVEAPMSSNDSEEVMSDSTKTDTNVLTEATMFKIDPMINMGEITPYDFIER
>NZ_CP047852.1|WP_160199863.1|386381_389012_+|alanine--tRNA-ligase
MKKLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMKPDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLKVDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITSASTFVGYDTATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDIQKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNMAPFSIELCGGIHVRNTSEIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVGGKGGGRPDMAQGGGTQPENISKSLSFIKDYIKNL
>NZ_CP047852.1|WP_000426912.1|389074_389335_+|IreB-family-regulatory-phosphoprotein
MENFDKTMKFDYEELPTQDVRDVLNNVYRTLDERGYNAVNQIVGYLLSGDPAYIPRQNEARNQIRHIDRDVIMEELVSYYLKEQNK
>NZ_CP047852.1|WP_000939059.1|389338_389767_+|Holliday-junction-resolvase-RuvX
MLQHKILGLDVGSRTVGIAISDIMGWTAQGLDTLRINEENNELGIDQLVDIIKKHNVGTVVIGLPKNMNNSIGFRGEASLTYKEKLLEAYPSIEIVMWDERLSTMAAERSLLEADVSRQKRKQVIDKMAAVFILQGYLDSLH
>NZ_CP047852.1|WP_000134779.1|389781_390090_+|DUF1292-domain-containing-protein
MTEHNHDSQLEINNEEELLTLFDEEGNEVLYRKVLEFYHPEFKKEYVILAEEGAQSDEDDMIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEMEE
>NZ_CP047852.1|WP_000342266.1|390374_391013_+|O-methyltransferase
MDDLNKKYLIDLHQHQNSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKGE
>NZ_CP047852.1|WP_000137775.1|391015_391939_+|U32-family-peptidase
MTELLVTPKSLSHMETLIDLGADAFVIGEQKFGLRLPGEFNRQQMTEAVALAHKNDKKVYAAVNGLFHNYHLDAVEDYINFLHEIRVDRIIFGDPAVVMYVKAQENPIPLHWNAETLVTNHFQCNYWGKRGASRAVLARELNLDEIINIKENSNVEIEVQVQGMTCMFQSKRMLLGNYYTFQDRQMKIERRNDEQSLLLYDEERQNNYPVYEDYNGTHIMSPNDICLIEELAPFFEAGIDSFKIDGILQTEEYINVVTEQYRQAIDLYNEDPEIYEDEKFMLMDPIEEIQPDHRPFDEGFLYKQTVY
>NZ_CP047852.1|WP_000848304.1|391950_393219_+|U32-family-peptidase
MKTIEEIKSTPKTVMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTMEEIAEGVEFANRYGAKIYVTTNIIAHDENIEGLESYLRNLEKTGATGIIVADPLIIETCKEVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMREMKEKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYELLEVDDNGELDVFYNQGEVTPFAMSPKDLKLIESIPQMMDIGVDSLKIEGRMKSIHYIATVVSVYRKVIDAYAADPDNFKINPEWLIELDKCANRDTAPAFFEGTPGYEEQMFGQQQSKKSPFDFCGLVLDYNEDTKIATIQQRNNFKPGQEIEFFGPEIETFTQVVEAIYDEEGNSLDAARHPLQIVQIKVDRPIYPNNMMRKEIG
>NZ_CP047852.1|WP_000648617.1|393218_393842_+|uridine-kinase
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ

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Crispr_ID: NZ_CP047852_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_4

414995-415074

Orphan

Consensus_repeat	Method
TGGGGCCCCAACATAGAGAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_4

>merge|NZ_CP047852|4|414995-415074|CRISPRCasFinder
TGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGGGTGGGGCCCCAACATAGAGAAATT

>NZ_CP047852|4|4|414995-415074|CRISPRCasFinder
TGGGGCCCCAACATAGAGAATTT	CGAAAAGAAATTCTACAGGTAATGCAAGTTGGGG
TGGGGCCCCAACATAGAGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_001104606.1\|421459_422398_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
NZ_CP047852.1\|WP_000084829.1\|407158_407875_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP047852.1\|WP_000953312.1\|409212_411360_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
NZ_CP047852.1\|WP_001282562.1\|411416_412391_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP047852.1\|WP_001802667.1\|425217_425901_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP047852.1\|WP_001190118.1\|422399_423152_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
NZ_CP047852.1\|WP_000627140.1\|416644_417622_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
NZ_CP047852.1\|WP_000048060.1\|424797_424974_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP047852.1\|WP_001788928.1\|407914_408601_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NZ_CP047852.1\|WP_000182215.1\|417653_418280_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
NZ_CP047852.1\|WP_160199865.1\|415419_416544_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP047852.1\|WP_000368341.1\|413032_414856_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP047852.1\|WP_160199864.1\|408692_409154_+\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
NZ_CP047852.1\|WP_000034716.1\|418348_420181_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP047852.1\|WP_001119021.1\|420316_421456_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
NZ_CP047852.1\|WP_001274017.1\|412435_412687_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP047852.1\|WP_000725167.1\|405658_406228_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
NZ_CP047852.1\|WP_000108667.1\|423158_424505_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP047852.1\|WP_001088020.1\|406802_407156_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP047852.1\|WP_001019324.1\|406217_406802_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_001104606.1\|421459_422398_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	4.30913e-134
NZ_CP047852.1\|WP_000084829.1\|407158_407875_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.9222e-16
NZ_CP047852.1\|WP_000953312.1\|409212_411360_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.42125e-90
NZ_CP047852.1\|WP_001282562.1\|411416_412391_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	2.9436e-104
NZ_CP047852.1\|WP_001802667.1\|425217_425901_+\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
NZ_CP047852.1\|WP_001190118.1\|422399_423152_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.33219e-91
NZ_CP047852.1\|WP_000627140.1\|416644_417622_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	6.60744e-119
NZ_CP047852.1\|WP_000048060.1\|424797_424974_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
NZ_CP047852.1\|WP_001788928.1\|407914_408601_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	2.17039e-33
NZ_CP047852.1\|WP_000182215.1\|417653_418280_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	4.88508e-81
NZ_CP047852.1\|WP_160199865.1\|415419_416544_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP047852.1\|WP_000368341.1\|413032_414856_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP047852.1\|WP_160199864.1\|408692_409154_+\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	5.11094e-101
NZ_CP047852.1\|WP_000034716.1\|418348_420181_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP047852.1\|WP_001119021.1\|420316_421456_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
NZ_CP047852.1\|WP_001274017.1\|412435_412687_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
NZ_CP047852.1\|WP_000725167.1\|405658_406228_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
NZ_CP047852.1\|WP_000108667.1\|423158_424505_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP047852.1\|WP_001088020.1\|406802_407156_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
NZ_CP047852.1\|WP_001019324.1\|406217_406802_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80

>NZ_CP047852.1|WP_000368341.1|413032_414856_+|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCVLRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>NZ_CP047852.1|WP_001274017.1|412435_412687_-|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>NZ_CP047852.1|WP_001282562.1|411416_412391_+|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELFILSL
>NZ_CP047852.1|WP_000953312.1|409212_411360_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTNKKNFDLKKIESRNCIVKGQFKVNDNKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYKPLKRLNLPLFVIKGITIIVLALFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>NZ_CP047852.1|WP_160199864.1|408692_409154_+|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKCIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>NZ_CP047852.1|WP_001788928.1|407914_408601_+|ComEA-family-DNA-binding-protein
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>NZ_CP047852.1|WP_000084829.1|407158_407875_+|class-I-SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>NZ_CP047852.1|WP_001088020.1|406802_407156_+|ribosome-silencing-factor
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>NZ_CP047852.1|WP_001019324.1|406217_406802_+|HD-domain-containing-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>NZ_CP047852.1|WP_000725167.1|405658_406228_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>NZ_CP047852.1|WP_160199865.1|415419_416544_+|oxygen-independent-coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLRMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDVIALTNRGKVIGNEVFEAFLIND
>NZ_CP047852.1|WP_000627140.1|416644_417622_+|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFNNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLLNTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>NZ_CP047852.1|WP_000182215.1|417653_418280_+|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNVKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>NZ_CP047852.1|WP_000034716.1|418348_420181_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>NZ_CP047852.1|WP_001119021.1|420316_421456_+|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>NZ_CP047852.1|WP_001104606.1|421459_422398_+|50S-ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVNVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>NZ_CP047852.1|WP_001190118.1|422399_423152_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>NZ_CP047852.1|WP_000108667.1|423158_424505_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>NZ_CP047852.1|WP_000048060.1|424797_424974_+|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>NZ_CP047852.1|WP_001802667.1|425217_425901_+|hypothetical-protein
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047852_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_5

889815-889896

Orphan

Consensus_repeat	Method
CTATGTTGGGGCCCCGCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_5

>merge|NZ_CP047852|5|889815-889896|CRISPRCasFinder
CTATGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCACTATGTTGGGGCCCCGCCAACTTGCA

>NZ_CP047852|5|5|889815-889896|CRISPRCasFinder
CTATGTTGGGGCCCCGCCAACTTGCA	TTGTCTGTAGAAATTGAGAATCCAATTTCA
CTATGTTGGGGCCCCGCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000791580.1\|894676_895174_-\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
NZ_CP047852.1\|WP_000857488.1\|891156_892116_+\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP047852.1\|WP_000398672.1\|879844_879979_-\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP047852.1\|WP_000739541.1\|887229_887955_+\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP047852.1\|WP_160199940.1\|896584_897010_+\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NZ_CP047852.1\|WP_000765708.1\|890337_890484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000669537.1\|894172_894523_-\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NZ_CP047852.1\|WP_000335234.1\|888882_889599_+\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP047852.1\|WP_001063558.1\|888049_888775_+\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP047852.1\|WP_000149423.1\|882571_882799_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001074342.1\|884833_885766_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP047852.1\|WP_000793607.1\|885788_886790_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP047852.1\|WP_000231632.1\|892592_892826_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000739210.1\|897378_897708_-\|complement-convertase-inhibitor-Ecb	unknown	unknown	gnl\|CDD\|289007
NZ_CP047852.1\|WP_001245802.1\|880883_881072_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP047852.1\|WP_000584398.1\|895432_895939_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001802045.1\|890156_890381_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_086037085.1\|883105_884611_-\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP047852.1\|WP_001032817.1\|893447_893633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_160199881.1\|881320_882286_+\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000791580.1\|894676_895174_-\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.38388e-27
NZ_CP047852.1\|WP_000857488.1\|891156_892116_+\|beta-channel-forming-cytolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	1.66722e-141
NZ_CP047852.1\|WP_000398672.1\|879844_879979_-\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
NZ_CP047852.1\|WP_000739541.1\|887229_887955_+\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	1.59495e-161
NZ_CP047852.1\|WP_160199940.1\|896584_897010_+\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	1.89841e-76
NZ_CP047852.1\|WP_000669537.1\|894172_894523_-\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NZ_CP047852.1\|WP_000335234.1\|888882_889599_+\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	5.01863e-153
NZ_CP047852.1\|WP_001063558.1\|888049_888775_+\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	2.07034e-148
NZ_CP047852.1\|WP_001074342.1\|884833_885766_-\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
NZ_CP047852.1\|WP_000793607.1\|885788_886790_-\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NZ_CP047852.1\|WP_000739210.1\|897378_897708_-\|complement-convertase-inhibitor-Ecb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.22818e-21
NZ_CP047852.1\|WP_001245802.1\|880883_881072_-\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NZ_CP047852.1\|WP_086037085.1\|883105_884611_-\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP047852.1\|WP_160199881.1\|881320_882286_+\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	5.63674e-82

>NZ_CP047852.1|WP_000335234.1|888882_889599_+|superantigen-like-protein-SSL12
MCKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP047852.1|WP_001063558.1|888049_888775_+|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDHETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP047852.1|WP_000739541.1|887229_887955_+|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLGTTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHLSLSNKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPKNAQIEVILEKSN
>NZ_CP047852.1|WP_000793607.1|885788_886790_-|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP047852.1|WP_001074342.1|884833_885766_-|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP047852.1|WP_086037085.1|883105_884611_-|YfcC-family-protein
MPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKKDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGLLITQVLIYS
>NZ_CP047852.1|WP_000149423.1|882571_882799_-|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NZ_CP047852.1|WP_160199881.1|881320_882286_+|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKRKIKINFFVMRLSNTITKN
>NZ_CP047852.1|WP_001245802.1|880883_881072_-|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NZ_CP047852.1|WP_000398672.1|879844_879979_-|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
>NZ_CP047852.1|WP_001802045.1|890156_890381_-|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP047852.1|WP_000765708.1|890337_890484_-|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP047852.1|WP_000857488.1|891156_892116_+|beta-channel-forming-cytolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>NZ_CP047852.1|WP_000231632.1|892592_892826_+|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NZ_CP047852.1|WP_001032817.1|893447_893633_+|hypothetical-protein
MNKHINKKATKLLEDYKKVQQRKSEETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP047852.1|WP_000669537.1|894172_894523_-|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NZ_CP047852.1|WP_000791580.1|894676_895174_-|fibrinogen-binding-protein
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NZ_CP047852.1|WP_000584398.1|895432_895939_-|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP047852.1|WP_160199940.1|896584_897010_+|formyl-peptide-receptor-like-1-inhibitory-protein
MYFTGRTYYEKNITKTIIASTVIAAGLLNQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>NZ_CP047852.1|WP_000739210.1|897378_897708_-|complement-convertase-inhibitor-Ecb
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNLFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047852_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_6

912723-912814

Orphan

Consensus_repeat	Method
CCTCTTTGATTTTTAATCATTAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_6

>merge|NZ_CP047852|6|912723-912814|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGAGGCTTTTATGCAGTGATGCGAAGCATCATCTGTATTCCGCTGTTCCTCTTTGATTTTTAATCATTATA

>NZ_CP047852|6|6|912723-912814|CRISPRCasFinder
CCTCTTTGATTTTTAATCATTAGA	GGCTTTTATGCAGTGATGCGAAGCATCATCTGTATTCCGCTGTT
CCTCTTTGATTTTTAATCATTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000191455.1\|911156_911423_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|172616
NZ_CP047852.1\|WP_001039659.1\|899291_900092_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP047852.1\|WP_000435374.1\|917006_917747_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP047852.1\|WP_000003559.1\|915567_916626_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP047852.1\|WP_000818278.1\|901142_902909_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236319
NZ_CP047852.1\|WP_000789822.1\|922197_922881_-\|heme-uptake-protein-IsdC	unknown	unknown	gnl\|CDD\|274705
NZ_CP047852.1\|WP_001246683.1\|921121_922198_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000079317.1\|902960_903575_-\|succinate-dehydrogenase-cytochrome-B558	unknown	unknown	gnl\|CDD\|239577
NZ_CP047852.1\|WP_001249281.1\|906491_908840_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP047852.1\|WP_001220194.1\|920246_921125_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	unknown	unknown	gnl\|CDD\|274706
NZ_CP047852.1\|WP_000390539.1\|903898_905680_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP047852.1\|WP_000234068.1\|910634_911156_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP047852.1\|WP_001788617.1\|917986_918094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000161942.1\|908849_910562_-\|DNA-polymerase/3'-5'-exonuclease-PolX	unknown	unknown	gnl\|CDD\|236311
NZ_CP047852.1\|WP_000139712.1\|900327_901143_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181515
NZ_CP047852.1\|WP_001566586.1\|919268_920237_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP047852.1\|WP_000908983.1\|913165_915568_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP047852.1\|WP_001018928.1\|906004_906319_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP047852.1\|WP_001242423.1\|918472_919207_-\|class-B-sortase	unknown	unknown	gnl\|CDD\|226898
NZ_CP047852.1\|WP_000670950.1\|918130_918454_-\|staphylobilin-forming-heme-oxygenase-IsdG	unknown	unknown	gnl\|CDD\|139480

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000191455.1\|911156_911423_-\|cell-division-protein-ZapA	gnl\|CDD\|172616	PRK14126, PRK14126, cell division protein ZapA; Provisional.	1.31214e-21
NZ_CP047852.1\|WP_001039659.1\|899291_900092_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
NZ_CP047852.1\|WP_000435374.1\|917006_917747_-\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	3.59141e-78
NZ_CP047852.1\|WP_000003559.1\|915567_916626_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP047852.1\|WP_000818278.1\|901142_902909_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236319	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP047852.1\|WP_000789822.1\|922197_922881_-\|heme-uptake-protein-IsdC	gnl\|CDD\|274705	TIGR03656, IsdC, heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain, which confers the ability to bind heme, and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.	3.84674e-97
NZ_CP047852.1\|WP_000079317.1\|902960_903575_-\|succinate-dehydrogenase-cytochrome-B558	gnl\|CDD\|239577	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.37018e-87
NZ_CP047852.1\|WP_001249281.1\|906491_908840_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP047852.1\|WP_001220194.1\|920246_921125_-\|heme-ABC-transporter-substrate-binding-protein-IsdE	gnl\|CDD\|274706	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.	1.68299e-155
NZ_CP047852.1\|WP_000390539.1\|903898_905680_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP047852.1\|WP_000234068.1\|910634_911156_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	4.13485e-29
NZ_CP047852.1\|WP_000161942.1\|908849_910562_-\|DNA-polymerase/3'-5'-exonuclease-PolX	gnl\|CDD\|236311	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX.	0
NZ_CP047852.1\|WP_000139712.1\|900327_901143_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|181515	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	0
NZ_CP047852.1\|WP_001566586.1\|919268_920237_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.24727e-61
NZ_CP047852.1\|WP_000908983.1\|913165_915568_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP047852.1\|WP_001018928.1\|906004_906319_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.26685e-48
NZ_CP047852.1\|WP_001242423.1\|918472_919207_-\|class-B-sortase	gnl\|CDD\|226898	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown].	2.77583e-128
NZ_CP047852.1\|WP_000670950.1\|918130_918454_-\|staphylobilin-forming-heme-oxygenase-IsdG	gnl\|CDD\|139480	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG.	3.35893e-67

>NZ_CP047852.1|WP_000191455.1|911156_911423_-|cell-division-protein-ZapA
MTQFKNKVNVSINDQLFTIVGEDNPEHIRYVAHLVDDKIKELGYKAAGLDTSRKAILTAVNIMHEKVLLEEENRRLKQQIHKLQQREQ
>NZ_CP047852.1|WP_000234068.1|910634_911156_-|CvpA-family-protein
MVIDFIIIIFFVYFVIVGFRRGFWLSMIHLSATIVSLWIASQFYKSIVERLIVFIPYPKTTAFNTTFAFHFNHLQNRFEAIVAFLMITLFCKFILYLIIVTFDKIIAYQNIHIFSRAMGMIVGVFMTIIVLHFTLYLLALYPNEALQHQLKISIVSHSLIFHIPYLSAFTINL
>NZ_CP047852.1|WP_000161942.1|908849_910562_-|DNA-polymerase/3'-5'-exonuclease-PolX
MTKKDVIKLLEQIATYMELKGENTFKISAYRKAAQSLELDERPLDEISDVTELKGIGKGVAEVINDYRETGESQYLQQLQEEVPEGLIPLLKIQGLGSKKIAKLYKELNIVDKASLQVACENGKVSELSGFAKKTEQNILEAVKQLGAKKDRYPIDQMRRLNQEIIDYIDTLNYIDQYSSAGSFRRFKEMSKDLDFIISTDNPKAVQQQLLNIPNKVKEVAVGNTKVSLELAYDDETIGVDFRLIEPSAFYHTLQHFTGSKEHNIRIRQLAKARDEKVSEYGIEQADGTLIQYDSEAKIYEHFNVNFIPPAMREDGSEFDKDLSNIITIDDINGDIHMHTTYSDGAFSIRDMVEANIAKGYKFMVITDHSQSLRVANGLQVERLLRQNEEIKALDKEYSEIDIYSGTEMDILPDGSLDYDDEILAQLDYVIGAIHQSFNQSEEQIMERLANACRNPYVRHIAHPTGRIIGRRDGYKPNIEQLMALAEETNTVLEINANPHRLDLSADIVRKYPNVKLTINTDAHHTNHLDFMNYGVATAQKGFVTKDRVINALSREAFKDFIENNTKLKK
>NZ_CP047852.1|WP_001249281.1|906491_908840_-|endonuclease-MutS2
MRQKTLDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFQQINETCDTYDLYDNASYELQGIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEDRTVYLPKAYHPLLNRETVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLEHNYKRVETQRLELDRLVKEAEQVHDDLSKQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYEDALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK
>NZ_CP047852.1|WP_001018928.1|906004_906319_-|thioredoxin
MAIVKVTDADFDSKVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL
>NZ_CP047852.1|WP_000390539.1|903898_905680_-|excinuclease-ABC-subunit-UvrC
MEDYKQRIKNKLNVVPMEPGCYLMKDRNDQVIYVGKAKKLRNRLRSYFTGAHDAKTTRLVGEIRRFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKYPRLQVTRTVKQGTGKYFGPYPNAYSAQETKKLLDRIYPYRKCDKMPDKLCLYYHIGQCLGPCVYDVDLSKYAQMTKEITDFLNGEDKTILKSLEERMLTASESLDFERAKEYRDLIQHIQNLTNKQKIMSSDKTIRDVFGYSVDKGWMCIQVFFIRQGNMIKRDTTMIPLQQTEEEEFYTFIGQFYSLNQHILPKEVHVPRNLDKEMIQSVVDTKIVQPARGPKKDMVDLAAHNAKVSLNNKFELISRDESRTIKAIEELGTQMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKNYRKYKIKTVKGPDDYKSMREVVRRRYSRVLNEGLPLPDLIIVDGGKGHMNGVIDVLQNELGLDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLKSILDDIDGIGNKRKTLLLRSFGSIKKMKEATLEDFKNIGIPENVAKNLHEQLHK
>NZ_CP047852.1|WP_000079317.1|902960_903575_-|succinate-dehydrogenase-cytochrome-B558
MAQSKNEFYLRRIHSLLGIIPIGAFLVVHLLVNHQATQGAEAFNKASNFMESLPFLIIVEFLFIYIPLLYHGLFGIHIAFTAKENVGHYSIFRNWMFFFQRVSGILTFIFIGIHLWQTRLQKAFYGKEVNYDLMHETLQHPGWAIFYIICIIAVVFHFANGLWSFLVTWGGLQSPKSQRVFTWVSLIVFLVISYIGVTAIIAFM
>NZ_CP047852.1|WP_000818278.1|901142_902909_-|succinate-dehydrogenase-flavoprotein-subunit
MAEKHLIVVGGGLAGLMSTIKAAEKGAHVDLFSVVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTLHHRTAYAGATTGQQLLYALDEQVRAYEVDGLVTKYEGWEFLGIVKGDDDSARGIVAQNMTTAEIETFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIDYISNIDRSYTDMDESIFEKRKAEEQERFDKLLAMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIVELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPERNDEEWLKTTMASFQGAFEKPQFTYDDVDVSLIPPRKRDYTSKSKGGKK
>NZ_CP047852.1|WP_000139712.1|900327_901143_-|succinate-dehydrogenase-iron-sulfur-subunit
MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIRRNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEVCPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPKGIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
>NZ_CP047852.1|WP_001039659.1|899291_900092_-|glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
>NZ_CP047852.1|WP_000908983.1|913165_915568_-|phenylalanine--tRNA-ligase-subunit-beta
MLISNEWLKEYVTIDDSVSNLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDADKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQEIGISSNYIPKSFESGIYVFSEAQVPGTDALQALYLDDQVMEFDLTPNRADALSMIGTAYEVAALYNTKMTKPETTSNELDLSANDELTVTIENEDKVPYYSARVVHDVTIEPSPIWMQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDAIGSQQIVVRQANEGEKMTTLDDTERELLTSDIVITNGQTPIALAGVMGGDFSEVKEQTSNIVIKGAIFDPVSIRHTSRRLNLRSESSSRFEKGIATEFVDEAVDRACYLLQTYANGKVLKDRVSSGELGAFITPIDITADKINRTIGFDLSQNDIVTIFNQLGFDTEINDDVITVLVPSRRKDITIKEDLIEEVARIYGYDDIPSTLPVFDKVTSGQLTDRQYKTRMVKEVLEGAGLDQAITYSLVSKEDATAFSMQQRQTIDLLMPMSEAHASLRQSLLPHLIEAASYNVARKNKDVKLFEIGNVFFANGEGELPDQVEYLSGILTGDYVVNQWQGKKETVDFYLAKGVVDRVSEKLNLEFSYRRADIDGLHPGRTAEILLENKVVGFIGELHPILAADNDLKRTYVFELNFDALMAVSVGYINYQPIPRFPGMSRDIALEVDQNIPAADLLSTIHAHGGNILKDTLVFDVYQGEHLEKGKKSIAIRLNYLDTEETLTDERVSKVQAEIEAALIEQGAVIR
>NZ_CP047852.1|WP_000003559.1|915567_916626_-|phenylalanine--tRNA-ligase-subunit-alpha
MSEQQTMSELKQQALVDINEANDERALQEVKVKYLGKKGSVSGLMKLMKDLPNEDKPAFGQKVNELRQTIQNELDERQQMLVKEKLNKQLAEETIDVSLPGRHIEIGSKHPLTRTIEEIEDLFLGLGYEIVNGYEVEQDHYNFEMLNLPKSHPARDMQDSFYITDEILLRTHTSPVQARTMESRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNVKMSDLKGTLELLAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSSEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGDM
>NZ_CP047852.1|WP_000435374.1|917006_917747_-|RNA-methyltransferase
MEQITSAQNNRIKQANKLKKKRERDKTGLALIEGVHLIEEAYQSGIVITQLFAIEPARLDQQIIAYAQEVFEINMKVAESLSGTVTPQGFFAIIEKPHYDISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPVMTQDLDTFITQFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHLKG
>NZ_CP047852.1|WP_001788617.1|917986_918094_-|hypothetical-protein
MVLLAFVTTIHDTDDGRFFNEHKHANNKLLKHSLI
>NZ_CP047852.1|WP_000670950.1|918130_918454_-|staphylobilin-forming-heme-oxygenase-IsdG
MKFMAENRLTLTKGTAKDIIERFYTRHGIETLEGFDGMFVTQTLEQEDFDEVKILTVWKSKQAFTDWLKSDVFKAAHKHVRSKNEDESSPIINNKVITYDIGYSYMK
>NZ_CP047852.1|WP_001242423.1|918472_919207_-|class-B-sortase
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTEFENDQDYQQFLNETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
>NZ_CP047852.1|WP_001566586.1|919268_920237_-|iron-ABC-transporter-permease
MMIKNKKKLLFLCLLVILIATAYISFVTGTIKLSFNDLITKFTTGNNEAVDSIIDLRLPRILIALMVGAMLAVSGALLQAALQNPLAEANIIGVSSGALIMRALCMLFIPQLYFYLPLLSFIGGLIPFLIIILLHSKFRFNAVSMILVGVALFVLLNGVLEILTQNPLMKIPQGLTMKIWSDVYILAVSALLGLILTLLLSPKLNLLNLDDIQARSIGFNIDRYRWLTGLLAVFLASATVAIVGQLAFLGIIVPHVVRKLVGGNYRVLIPFSTVIGAWLLLVADLLGRVIQPPLEIPANAILMIVGGPMLIYLICQSQRNRI
>NZ_CP047852.1|WP_001220194.1|920246_921125_-|heme-ABC-transporter-substrate-binding-protein-IsdE
MRIIKYLTILVISVVILTSCQSSSSQESTKSDEFRIVPTTVALTMTLDKLDLPIVGKPTSYKTLPNRYKDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVKDRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGITANVDADKAMTQLYDLFYKDKK
>NZ_CP047852.1|WP_001246683.1|921121_922198_-|hypothetical-protein
MRNVKQIATKSIIAIISIGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQQLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTVKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYILFAAGIVLATILLISAHLYSRKRGNQV
>NZ_CP047852.1|WP_000789822.1|922197_922881_-|heme-uptake-protein-IsdC
MKNILKVFNTTILALIIIIATFSNSANAADSGTLNYEVYKYNTNDTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDERTSEFEVSKLNGKIDGKIDVYIDEKVNGKPFKYDHHYNITYKFNGPTDVAGANAPGKDDKNSASGSDKGSDGTTTGQSESNSSNKDKVENPQTNAGTPAYIYAIPVASVALLIAITLFVRKKSKGNVE

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Crispr_ID: NZ_CP047852_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_7

990797-990878

Orphan

Consensus_repeat	Method
TGCAAGTTGGGGATGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_7

>merge|NZ_CP047852|7|990797-990878|CRISPRCasFinder
TGCAAGTTGGGGATGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTATGGGCCCCAAC

>NZ_CP047852|7|7|990797-990878|CRISPRCasFinder
TGCAAGTTGGGGATGGGCCCCAACA	CAGAGAATTTCGAAAAGAAATTCTACAGGCAA
TGCAAGTTGGGGTATGGGCCCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_001010406.1\|987832_988957_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP047852.1\|WP_000174053.1\|987124_987829_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_CP047852.1\|WP_000666799.1\|986188_986860_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_CP047852.1\|WP_000491994.1\|1000209_1000644_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP047852.1\|WP_000104254.1\|995839_996130_+\|cytochrome-aa3-quinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|225667
NZ_CP047852.1\|WP_001031976.1\|998310_999537_+\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	unknown	unknown	gnl\|CDD\|224235
NZ_CP047852.1\|WP_000017736.1\|995237_995843_+\|cytochrome-aa3-quinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131943
NZ_CP047852.1\|WP_000483713.1\|982543_984028_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NZ_CP047852.1\|WP_001010762.1\|993259_995248_+\|cytochrome-aa3-quinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131928
NZ_CP047852.1\|WP_000225831.1\|989626_990487_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184552
NZ_CP047852.1\|WP_000238664.1\|980953_981520_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
NZ_CP047852.1\|WP_000861574.1\|988943_989426_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP047852.1\|WP_000088431.1\|999584_1000055_+\|DUF2538-family-protein	unknown	unknown	gnl\|CDD\|287742
NZ_CP047852.1\|WP_031824143.1\|991735_991855_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000032746.1\|984006_986196_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP047852.1\|WP_001037831.1\|991270_991588_+\|DUF5011-domain-containing-protein	unknown	unknown	gnl\|CDD\|374521
NZ_CP047852.1\|WP_000671248.1\|996666_997860_-\|teichoic-acid-D-Ala-esterase-FmtA	unknown	unknown	gnl\|CDD\|365903
NZ_CP047852.1\|WP_000848350.1\|986861_987125_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|224741
NZ_CP047852.1\|WP_000030821.1\|981522_982551_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP047852.1\|WP_000032836.1\|992159_993260_+\|cytochrome-aa3-quinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|273621

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_001010406.1\|987832_988957_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NZ_CP047852.1\|WP_000174053.1\|987124_987829_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	2.31998e-136
NZ_CP047852.1\|WP_000666799.1\|986188_986860_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.77638e-140
NZ_CP047852.1\|WP_000491994.1\|1000209_1000644_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.00329e-24
NZ_CP047852.1\|WP_000104254.1\|995839_996130_+\|cytochrome-aa3-quinol-oxidase-subunit-IV	gnl\|CDD\|225667	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].	1.35708e-26
NZ_CP047852.1\|WP_000017736.1\|995237_995843_+\|cytochrome-aa3-quinol-oxidase-subunit-III	gnl\|CDD\|131943	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III. This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	2.41545e-111
NZ_CP047852.1\|WP_000483713.1\|982543_984028_-\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NZ_CP047852.1\|WP_001010762.1\|993259_995248_+\|cytochrome-aa3-quinol-oxidase-subunit-I	gnl\|CDD\|131928	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I. This family (QoxB) encodes subunit I of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport].	0
NZ_CP047852.1\|WP_000225831.1\|989626_990487_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184552	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP047852.1\|WP_000238664.1\|980953_981520_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
NZ_CP047852.1\|WP_000861574.1\|988943_989426_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.58631e-86
NZ_CP047852.1\|WP_000088431.1\|999584_1000055_+\|DUF2538-family-protein	gnl\|CDD\|287742	pfam10804, DUF2538, Protein of unknown function (DUF2538). This family of proteins has no known function.	4.64019e-106
NZ_CP047852.1\|WP_001031976.1\|998310_999537_+\|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.69949e-78
NZ_CP047852.1\|WP_000032746.1\|984006_986196_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP047852.1\|WP_001037831.1\|991270_991588_+\|DUF5011-domain-containing-protein	gnl\|CDD\|374521	pfam16403, DUF5011, Domain of unknown function (DUF5011). This small family of proteins is functionally uncharacterized. This family is found in Bacteroides, Prevotella, and Parabateroides. Proteins in this family are around 230 amino acids in length.	1.27284e-18
NZ_CP047852.1\|WP_000671248.1\|996666_997860_-\|teichoic-acid-D-Ala-esterase-FmtA	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.60208e-60
NZ_CP047852.1\|WP_000848350.1\|986861_987125_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|224741	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism].	2.71239e-30
NZ_CP047852.1\|WP_000030821.1\|981522_982551_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP047852.1\|WP_000032836.1\|992159_993260_+\|cytochrome-aa3-quinol-oxidase-subunit-II	gnl\|CDD\|273621	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b). [Energy metabolism, Electron transport].	7.48398e-146

>NZ_CP047852.1|WP_000225831.1|989626_990487_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MVAKILDGKQIAKDYRQGLEDQVEALKEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGIDS
>NZ_CP047852.1|WP_000861574.1|988943_989426_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGLNIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
>NZ_CP047852.1|WP_001010406.1|987832_988957_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPAEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLGKDLDLLENEFNEHPEWHLHIYGKSERKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN
>NZ_CP047852.1|WP_000174053.1|987124_987829_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTLLYEGKAKRIFSTNQENELRVEYKDEVTAGNGAKKDTMAGKGRLNNQITSIIFKYLQENGIESHFIKQLSETEQLVKPVKIIPLEVVVRNIASGSITKRLGFENGEVFREPLVEFFYKNDALNDPLITDDHVKLLNIASDEDIEILKSKALKINNVLKQLMDAMNLKLVDFKIEFGKTETGQILLADEISPDTCRIWDKATNANFDKDVYRNNTGSLIETYQIFLNKLEDLK
>NZ_CP047852.1|WP_000848350.1|986861_987125_-|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLYMTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLDDEKENA
>NZ_CP047852.1|WP_000666799.1|986188_986860_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>NZ_CP047852.1|WP_000032746.1|984006_986196_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLLTLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>NZ_CP047852.1|WP_000483713.1|982543_984028_-|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>NZ_CP047852.1|WP_000030821.1|981522_982551_-|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINGSGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>NZ_CP047852.1|WP_000238664.1|980953_981520_-|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>NZ_CP047852.1|WP_001037831.1|991270_991588_+|DUF5011-domain-containing-protein
MNKLLQSLSALGVSATLVTPNLNADATTNTTPQIKGANDIVIKKGQDYNLLNGISAFDKEDGDLTDKIKVDGQIDTSKSGKYQIKYHVTDSDGAIKISTRYIEVK
>NZ_CP047852.1|WP_031824143.1|991735_991855_-|hypothetical-protein
MERKRKHFNKEFAKSNLSLNNEKWKFVCSKSKHFFKKSS
>NZ_CP047852.1|WP_000032836.1|992159_993260_+|cytochrome-aa3-quinol-oxidase-subunit-II
MSKFKSLLLLFGTLILLSGCSNIEIFNAKGPVASSQKFLILYSIVFMLVICFVVLGMFAIFIYKYSYNKNAESGKMHHNAIIETIWFVIPIIIVAALAIPTVKTLYDYEKPPKSEKDPMVVYAVSAGYKWFFAYPDEHIETVNTLTIPKDRPVVFKLQAMDTMTSFWIPQLGGQKYAMTGMTMNWTLEASQTGTFRGRNSNFNGEGFSRQTFKVNAVSQKDYDKWVKEVKGKKTLDQDTFDKQLLPSTPNKALEFNGTHMAFVDPAADPEYIFYAYKRFNFELKDPNFTSEENMFKDVSDKPLIPARKAQITNANYKRHGMKLMILGNDEPYNNEFKKDESKNAKEMKKISKDAQDQDNDDHGGGH
>NZ_CP047852.1|WP_001010762.1|993259_995248_+|cytochrome-aa3-quinol-oxidase-subunit-I
MNFPWDQLLVKGNWMITMAQIGAPFLVIGLIAVITYFKLWKYLYKEWFTSVDHKKIGIMYLICAVLMFVRGGIDALLIRAQLTVPDNKFLESNHYNEIFSTHGVIMIIFMAMPFIFGLWNIVVPLQIGARDVAFPVLNNVSFWLFFAGMILFNLSFIIGGSPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGLGTLATGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIVILAFPPLTVALALMTTDRIFDTAFFTVAHGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGIPTGVKLFNWLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLVTGVVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYTYMPSDGWFLLNLISTIGALLMAIGFLFLVVSIVYSHFKSPREATGDNWDGLGRTLEWTTASAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWIGIFMTIGGFFLIFETVIPALICLFGIFGTMIYRSFQIDHGYHIPAAEVAETEARLREARIKEREAVSHES
>NZ_CP047852.1|WP_000017736.1|995237_995843_+|cytochrome-aa3-quinol-oxidase-subunit-III
MSHDTNTIDSRTHEGELNKLGFWIFITAEFALFGTLFATLLTLQHGGDYAGKMTTELFELPLVLIMTFALLFSSYTCGIAIYYMRQEKQKLMMFWMIITLLLGLVFVGFEIYEFAHYASEGVNPTIGSYWSSFFILLGTHGCHVSLGIVWAICLLIQIQRRGLDKYNAPKLFIVSLYWHFLDVVWVFIFTAVYMIGMVYSG
>NZ_CP047852.1|WP_000104254.1|995839_996130_+|cytochrome-aa3-quinol-oxidase-subunit-IV
MSTIMKHTVGFIASIVLTLLAVYVTLYTSLTFHAKLTIIFGFAFVQAGLQLLMFMHLTEGKDGRLQTFKVIFALVITLCFVVGTYWVMQGGHSSHL
>NZ_CP047852.1|WP_000671248.1|996666_997860_-|teichoic-acid-D-Ala-esterase-FmtA
MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKNPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKQYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ
>NZ_CP047852.1|WP_001031976.1|998310_999537_+|polyisoprenyl-teichoic-acid--peptidoglycan-teichoic-acid-transferase
MNKFLKYFLILLALVLIVVPIVFATLLFKTSQDAFESSQDSKNANRQSNLRDNKVNPEEQPISILFLGIDDNDGRRKKGQDAEHSRSDAMILTTFNQSKHQIRMLSIPRDTISYIPKVGYYDKITHAHAYGGPIAAMDSVEATMNVPVDYYVRVNMKAFVEAVNELGGIYYDVPYDLNEPNTDDTGKIKIKKGYQKLNGDEALAVARTRHHDSDLKRGQRQMELIKILFQKAQEVDSIDKLDNVIQIVGKNAKHNLTNSEIKALAKMYLTNDVEIKTAQLKGKDDMLNGIYYYHPSVESIQKYANLLRKDLELSPINDKNDFLDQRVINHYGSLIPLTPLDSSLLRKEQNDTTDKDKSSNNTDDSNNSNNNNGVNNQQQPTTGQNTNQDQGNIQQTPQASNNQNGVVN
>NZ_CP047852.1|WP_000088431.1|999584_1000055_+|DUF2538-family-protein
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
>NZ_CP047852.1|WP_000491994.1|1000209_1000644_+|GNAT-family-N-acetyltransferase
MFSKVNNQKMLEDCFYIRKKVFVKEQGVPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGIGRMLMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLTSLN

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Crispr_ID: NZ_CP047852_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_8

1159154-1159235

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_8

>merge|NZ_CP047852|8|1159154-1159235|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>NZ_CP047852|8|8|1159154-1159235|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000569884.1\|1164210_1164705_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NZ_CP047852.1\|WP_000571218.1\|1156591_1157617_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP047852.1\|WP_000589549.1\|1160933_1161290_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP047852.1\|WP_000732326.1\|1155064_1155886_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP047852.1\|WP_001190695.1\|1161433_1161754_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047852.1\|WP_160199889.1\|1164859_1165477_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP047852.1\|WP_000752917.1\|1154516_1154711_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047852.1\|WP_000168845.1\|1152343_1153105_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP047852.1\|WP_000974455.1\|1163389_1163812_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP047852.1\|WP_000290490.1\|1160395_1160776_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047852.1\|WP_000520233.1\|1155903_1156599_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP047852.1\|WP_000662306.1\|1160218_1160332_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001183859.1\|1153432_1154284_+\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP047852.1\|WP_000150018.1\|1162525_1163242_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_CP047852.1\|WP_000422908.1\|1161903_1162443_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP047852.1\|WP_000205572.1\|1150938_1152246_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047852.1\|WP_000807670.1\|1149582_1150824_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047852.1\|WP_001065801.1\|1157866_1158163_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047852.1\|WP_001018962.1\|1158155_1158542_-\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_CP047852.1\|WP_000932230.1\|1159338_1160217_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000569884.1\|1164210_1164705_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
NZ_CP047852.1\|WP_000571218.1\|1156591_1157617_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
NZ_CP047852.1\|WP_000589549.1\|1160933_1161290_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_CP047852.1\|WP_000732326.1\|1155064_1155886_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
NZ_CP047852.1\|WP_001190695.1\|1161433_1161754_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
NZ_CP047852.1\|WP_160199889.1\|1164859_1165477_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	5.05823e-61
NZ_CP047852.1\|WP_000752917.1\|1154516_1154711_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
NZ_CP047852.1\|WP_000168845.1\|1152343_1153105_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
NZ_CP047852.1\|WP_000974455.1\|1163389_1163812_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.40241e-61
NZ_CP047852.1\|WP_000290490.1\|1160395_1160776_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
NZ_CP047852.1\|WP_000520233.1\|1155903_1156599_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_CP047852.1\|WP_001183859.1\|1153432_1154284_+\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	3.93399e-76
NZ_CP047852.1\|WP_000150018.1\|1162525_1163242_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	2.10768e-148
NZ_CP047852.1\|WP_000422908.1\|1161903_1162443_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
NZ_CP047852.1\|WP_000205572.1\|1150938_1152246_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
NZ_CP047852.1\|WP_000807670.1\|1149582_1150824_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047852.1\|WP_001065801.1\|1157866_1158163_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
NZ_CP047852.1\|WP_001018962.1\|1158155_1158542_-\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
NZ_CP047852.1\|WP_000932230.1\|1159338_1160217_-\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	2.22388e-74

>NZ_CP047852.1|WP_001018962.1|1158155_1158542_-|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>NZ_CP047852.1|WP_001065801.1|1157866_1158163_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>NZ_CP047852.1|WP_000571218.1|1156591_1157617_-|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>NZ_CP047852.1|WP_000520233.1|1155903_1156599_-|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_CP047852.1|WP_000732326.1|1155064_1155886_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_CP047852.1|WP_000752917.1|1154516_1154711_-|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>NZ_CP047852.1|WP_001183859.1|1153432_1154284_+|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPLLLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_CP047852.1|WP_000168845.1|1152343_1153105_-|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_CP047852.1|WP_000205572.1|1150938_1152246_-|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_CP047852.1|WP_000807670.1|1149582_1150824_-|cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>NZ_CP047852.1|WP_000932230.1|1159338_1160217_-|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRLVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_CP047852.1|WP_000662306.1|1160218_1160332_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>NZ_CP047852.1|WP_000290490.1|1160395_1160776_-|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>NZ_CP047852.1|WP_000589549.1|1160933_1161290_-|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_CP047852.1|WP_001190695.1|1161433_1161754_+|thioredoxin-family-protein
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_CP047852.1|WP_000422908.1|1161903_1162443_-|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_CP047852.1|WP_000150018.1|1162525_1163242_-|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQEDIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>NZ_CP047852.1|WP_000974455.1|1163389_1163812_+|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NZ_CP047852.1|WP_000569884.1|1164210_1164705_+|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_CP047852.1|WP_160199889.1|1164859_1165477_+|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKIGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: NZ_CP047852_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_9

1362804-1362896

Orphan

Consensus_repeat	Method
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_9

>merge|NZ_CP047852|9|1362804-1362896|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTTATGCAGTTGTGCCTTAGCATCCAACTGCGTTCCTCTTCACCTTTAG

>NZ_CP047852|9|9|1362804-1362896|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CGATTAGAGGCTTTTATGCAGTTGTGCCT
TAGCATCCAACTGCGTTCCTCTTCACCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_001021139.1\|1363952_1365614_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP047852.1\|WP_000901749.1\|1363047_1363683_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP047852.1\|WP_000633782.1\|1370339_1370876_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP047852.1\|WP_001805017.1\|1354213_1355143_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
NZ_CP047852.1\|WP_001018677.1\|1356090_1356465_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
NZ_CP047852.1\|WP_078064452.1\|1367810_1368332_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
NZ_CP047852.1\|WP_000477505.1\|1369694_1370171_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP047852.1\|WP_001819741.1\|1365610_1365994_-\|DUF1934-family-protein	unknown	unknown	gnl\|CDD\|226896
NZ_CP047852.1\|WP_000655099.1\|1366119_1366227_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001045423.1\|1356714_1357503_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP047852.1\|WP_001222133.1\|1357671_1358388_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000735555.1\|1358549_1359056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_072467437.1\|1360749_1361700_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP047852.1\|WP_000808898.1\|1371084_1372023_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP047852.1\|WP_001200748.1\|1366301_1367312_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
NZ_CP047852.1\|WP_001813976.1\|1361847_1362675_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP047852.1\|WP_000180234.1\|1368359_1369655_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_CP047852.1\|WP_000365354.1\|1359975_1360695_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP047852.1\|WP_000169042.1\|1353794_1354019_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP047852.1\|WP_000362974.1\|1359191_1359992_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_001021139.1\|1363952_1365614_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP047852.1\|WP_000901749.1\|1363047_1363683_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	9.55275e-93
NZ_CP047852.1\|WP_001805017.1\|1354213_1355143_+\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	8.55275e-37
NZ_CP047852.1\|WP_001018677.1\|1356090_1356465_+\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
NZ_CP047852.1\|WP_078064452.1\|1367810_1368332_-\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	6.25907e-97
NZ_CP047852.1\|WP_001819741.1\|1365610_1365994_-\|DUF1934-family-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
NZ_CP047852.1\|WP_000180234.1\|1368359_1369655_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.30042e-150
NZ_CP047852.1\|WP_001045423.1\|1356714_1357503_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.91231e-35
NZ_CP047852.1\|WP_000477505.1\|1369694_1370171_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.09314e-12
NZ_CP047852.1\|WP_072467437.1\|1360749_1361700_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48
NZ_CP047852.1\|WP_000808898.1\|1371084_1372023_-\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	2.33527e-167
NZ_CP047852.1\|WP_001200748.1\|1366301_1367312_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
NZ_CP047852.1\|WP_001813976.1\|1361847_1362675_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
NZ_CP047852.1\|WP_000633782.1\|1370339_1370876_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
NZ_CP047852.1\|WP_000365354.1\|1359975_1360695_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
NZ_CP047852.1\|WP_000169042.1\|1353794_1354019_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
NZ_CP047852.1\|WP_000362974.1\|1359191_1359992_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.18729e-25

>NZ_CP047852.1|WP_001813976.1|1361847_1362675_-|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>NZ_CP047852.1|WP_072467437.1|1360749_1361700_-|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSFITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVIGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>NZ_CP047852.1|WP_000365354.1|1359975_1360695_-|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>NZ_CP047852.1|WP_000362974.1|1359191_1359992_-|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVKLLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLMLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTASFINKHHDEKHV
>NZ_CP047852.1|WP_000735555.1|1358549_1359056_-|hypothetical-protein
MKKLLTASIIACSVVMGVGLANTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>NZ_CP047852.1|WP_001222133.1|1357671_1358388_-|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>NZ_CP047852.1|WP_001045423.1|1356714_1357503_-|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLNFLKSVS
>NZ_CP047852.1|WP_001018677.1|1356090_1356465_+|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>NZ_CP047852.1|WP_001805017.1|1354213_1355143_+|DMT-family-transporter
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNSSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFSSPKIAMTSRKTIGLLCILTGIILLRLF
>NZ_CP047852.1|WP_000169042.1|1353794_1354019_+|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK
>NZ_CP047852.1|WP_000901749.1|1363047_1363683_-|endonuclease-III-domain-containing-protein
MLGTDELYKLLYRHMGPQNWWPADNDIELMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>NZ_CP047852.1|WP_001021139.1|1363952_1365614_-|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVAAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLAAHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>NZ_CP047852.1|WP_001819741.1|1365610_1365994_-|DUF1934-family-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>NZ_CP047852.1|WP_000655099.1|1366119_1366227_-|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>NZ_CP047852.1|WP_001200748.1|1366301_1367312_-|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>NZ_CP047852.1|WP_078064452.1|1367810_1368332_-|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLEGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAVLKDFLMNHDEGMWKHSSDALHQAFN
>NZ_CP047852.1|WP_000180234.1|1368359_1369655_-|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVSPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>NZ_CP047852.1|WP_000477505.1|1369694_1370171_-|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYQPEMYGEKLDLALMYKAF
>NZ_CP047852.1|WP_000633782.1|1370339_1370876_-|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>NZ_CP047852.1|WP_000808898.1|1371084_1372023_-|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDDNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESLAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED

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Crispr_ID: NZ_CP047852_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_10

1873091-1873175

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_10

>merge|NZ_CP047852|10|1873091-1873175|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>NZ_CP047852|10|10|1873091-1873175|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_001230678.1\|1880162_1881050_-\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	unknown	unknown	gnl\|CDD\|187543
NZ_CP047852.1\|WP_000197962.1\|1869306_1870068_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP047852.1\|WP_000826672.1\|1870064_1871039_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP047852.1\|WP_000825098.1\|1881049_1881607_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|225059
NZ_CP047852.1\|WP_000171645.1\|1868262_1869294_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP047852.1\|WP_160199943.1\|1857230_1864406_-\|amino-acid-adenylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|237108
NZ_CP047852.1\|WP_000723452.1\|1877624_1878770_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP047852.1\|WP_000356963.1\|1872825_1873029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001291020.1\|1881617_1882823_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NZ_CP047852.1\|WP_001237005.1\|1876843_1877227_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP047852.1\|WP_000290397.1\|1874929_1876417_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143435
NZ_CP047852.1\|WP_000480603.1\|1877233_1877560_+\|staphylobilin-forming-heme-oxygenase-IsdI	unknown	unknown	gnl\|CDD\|183968
NZ_CP047852.1\|WP_000706138.1\|1866488_1867514_-\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
NZ_CP047852.1\|WP_000590844.1\|1871052_1871793_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP047852.1\|WP_000239646.1\|1882823_1884029_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000779489.1\|1878846_1880109_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
NZ_CP047852.1\|WP_001013481.1\|1873323_1874283_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_CP047852.1\|WP_000826862.1\|1864852_1866103_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP047852.1\|WP_001092004.1\|1867686_1868046_-\|DUF2294-domain-containing-protein	unknown	unknown	gnl\|CDD\|227896
NZ_CP047852.1\|WP_000171919.1\|1872134_1872647_-\|DUF4242-domain-containing-protein	unknown	unknown	gnl\|CDD\|379428

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_001230678.1\|1880162_1881050_-\|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.08984e-118
NZ_CP047852.1\|WP_000197962.1\|1869306_1870068_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	9.74317e-74
NZ_CP047852.1\|WP_000826672.1\|1870064_1871039_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.2258e-49
NZ_CP047852.1\|WP_000825098.1\|1881049_1881607_-\|sugar-transferase	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
NZ_CP047852.1\|WP_000171645.1\|1868262_1869294_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.67474e-20
NZ_CP047852.1\|WP_160199943.1\|1857230_1864406_-\|amino-acid-adenylation-domain-containing-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NZ_CP047852.1\|WP_000723452.1\|1877624_1878770_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP047852.1\|WP_001291020.1\|1881617_1882823_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	3.56278e-74
NZ_CP047852.1\|WP_001237005.1\|1876843_1877227_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	3.33906e-41
NZ_CP047852.1\|WP_000290397.1\|1874929_1876417_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
NZ_CP047852.1\|WP_000480603.1\|1877233_1877560_+\|staphylobilin-forming-heme-oxygenase-IsdI	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
NZ_CP047852.1\|WP_000706138.1\|1866488_1867514_-\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
NZ_CP047852.1\|WP_000590844.1\|1871052_1871793_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.91027e-113
NZ_CP047852.1\|WP_000779489.1\|1878846_1880109_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NZ_CP047852.1\|WP_001013481.1\|1873323_1874283_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
NZ_CP047852.1\|WP_000826862.1\|1864852_1866103_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
NZ_CP047852.1\|WP_001092004.1\|1867686_1868046_-\|DUF2294-domain-containing-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
NZ_CP047852.1\|WP_000171919.1\|1872134_1872647_-\|DUF4242-domain-containing-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26

>NZ_CP047852.1|WP_000356963.1|1872825_1873029_+|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>NZ_CP047852.1|WP_000171919.1|1872134_1872647_-|DUF4242-domain-containing-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>NZ_CP047852.1|WP_000590844.1|1871052_1871793_-|ABC-transporter-ATP-binding-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>NZ_CP047852.1|WP_000826672.1|1870064_1871039_-|ABC-transporter-substrate-binding-protein
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVISDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>NZ_CP047852.1|WP_000197962.1|1869306_1870068_-|ABC-transporter-permease
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIATNLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>NZ_CP047852.1|WP_000171645.1|1868262_1869294_-|acyl-CoA/acyl-ACP-dehydrogenase
MTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>NZ_CP047852.1|WP_001092004.1|1867686_1868046_-|DUF2294-domain-containing-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>NZ_CP047852.1|WP_000706138.1|1866488_1867514_-|NAD-dependent-formate-dehydrogenase
MKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKASNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>NZ_CP047852.1|WP_000826862.1|1864852_1866103_-|MFS-transporter
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>NZ_CP047852.1|WP_160199943.1|1857230_1864406_-|amino-acid-adenylation-domain-containing-protein
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPTSSANYDLEAFFKQELSTYHFNDSPLFKFKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHLNRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYLPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLAPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLKARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEVLQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEIMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTNPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK
>NZ_CP047852.1|WP_001013481.1|1873323_1874283_-|cation-transporter
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>NZ_CP047852.1|WP_000290397.1|1874929_1876417_-|aldehyde-dehydrogenase-family-protein
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>NZ_CP047852.1|WP_001237005.1|1876843_1877227_+|YbaN-family-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNNKIEE
>NZ_CP047852.1|WP_000480603.1|1877233_1877560_+|staphylobilin-forming-heme-oxygenase-IsdI
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>NZ_CP047852.1|WP_000723452.1|1877624_1878770_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRTDKPDEFVPLRHK
>NZ_CP047852.1|WP_000779489.1|1878846_1880109_-|nucleotide-sugar-dehydrogenase
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVLYYNYGNIFNFIDK
>NZ_CP047852.1|WP_001230678.1|1880162_1881050_-|capsular-polysaccharide-type-5/8-biosynthesis-epimerase-CapN
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>NZ_CP047852.1|WP_000825098.1|1881049_1881607_-|sugar-transferase
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>NZ_CP047852.1|WP_001291020.1|1881617_1882823_-|glycosyltransferase-family-4-protein
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>NZ_CP047852.1|WP_000239646.1|1882823_1884029_-|capsular-polysaccharide-biosynthesis-protein
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITIIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD

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Crispr_ID: NZ_CP047852_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_11

2047880-2048016

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGAGCCCCAACATA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047852_11

>merge|NZ_CP047852|11|2047880-2048016|CRISPRCasFinder
AATATCTTGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCGATTTCTACAGACAATGCAAGTTGGCGGAGCCCCAACATAGAAGCTGGTGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATA

>NZ_CP047852|11|11|2047880-2048016|CRISPRCasFinder
AATATCTTGGCGGGGCCCCAACAAA	GAGAAATTGGATTCCCGATTTCTACAGACAA
TGCAAGTTGGCGGAGCCCCAACATA	GAAGCTGGTGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGGGCCCCAACATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000240580.1\|2050142_2050448_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD	unknown	unknown	gnl\|CDD\|188447
NZ_CP047852.1\|WP_000640266.1\|2041427_2042006_+\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|153419
NZ_CP047852.1\|WP_001065591.1\|2037736_2038555_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237044
NZ_CP047852.1\|WP_000592607.1\|2043274_2044033_+\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP047852.1\|WP_001159430.1\|2050411_2051650_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|274866
NZ_CP047852.1\|WP_000185861.1\|2053901_2054594_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP047852.1\|WP_000944141.1\|2038572_2039187_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|172153
NZ_CP047852.1\|WP_000926770.1\|2055592_2056093_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP047852.1\|WP_000659675.1\|2053222_2053885_+\|capsular-polysaccharide-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|226453
NZ_CP047852.1\|WP_000301924.1\|2056095_2056572_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
NZ_CP047852.1\|WP_072470764.1\|2045745_2047788_+\|YSIRK-domain-containing-triacylglycerol-lipase-Lip1	unknown	unknown	gnl\|CDD\|224001
NZ_CP047852.1\|WP_160199917.1\|2042573_2043278_+\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|172156
NZ_CP047852.1\|WP_000565312.1\|2054590_2055358_+\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226870
NZ_CP047852.1\|WP_000635623.1\|2042002_2042581_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|171871
NZ_CP047852.1\|WP_000186287.1\|2044029_2044662_+\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
NZ_CP047852.1\|WP_000930650.1\|2039179_2040430_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|172308
NZ_CP047852.1\|WP_000653261.1\|2051813_2052374_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376089
NZ_CP047852.1\|WP_000639191.1\|2040445_2041459_+\|histidinol-phosphate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223157
NZ_CP047852.1\|WP_000723831.1\|2048234_2049287_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226446
NZ_CP047852.1\|WP_000877369.1\|2049273_2050146_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	unknown	unknown	gnl\|CDD\|188448

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000240580.1\|2050142_2050448_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD	gnl\|CDD\|188447	TIGR03932, IcaD_partial, intracellular adhesion protein D. Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.14464e-30
NZ_CP047852.1\|WP_000640266.1\|2041427_2042006_+\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|153419	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and some eubacteria while they are encoded as bifunctional enzymes in other eubacteria, such that the enzyme is fused to histidinol-phosphate phosphatase, the penultimate enzyme of the histidine biosynthesis pathway. The histidine biosynthesis pathway is a potential target for development of herbicides, and IGPD is a target for the triazole phosphonate herbicides.	2.40504e-103
NZ_CP047852.1\|WP_001065591.1\|2037736_2038555_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237044	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	4.50318e-175
NZ_CP047852.1\|WP_000592607.1\|2043274_2044033_+\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	7.277e-155
NZ_CP047852.1\|WP_001159430.1\|2050411_2051650_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|274866	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase. Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages.	0
NZ_CP047852.1\|WP_000185861.1\|2053901_2054594_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	7.75315e-85
NZ_CP047852.1\|WP_000944141.1\|2038572_2039187_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|172153	PRK13584, hisG, ATP phosphoribosyltransferase.	2.22399e-133
NZ_CP047852.1\|WP_000926770.1\|2055592_2056093_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.14923e-14
NZ_CP047852.1\|WP_000659675.1\|2053222_2053885_+\|capsular-polysaccharide-biosynthesis-protein-CapA	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	5.65863e-89
NZ_CP047852.1\|WP_000301924.1\|2056095_2056572_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	7.84889e-107
NZ_CP047852.1\|WP_072470764.1\|2045745_2047788_+\|YSIRK-domain-containing-triacylglycerol-lipase-Lip1	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	2.1496e-82
NZ_CP047852.1\|WP_160199917.1\|2042573_2043278_+\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	gnl\|CDD\|172156	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional.	4.08057e-167
NZ_CP047852.1\|WP_000565312.1\|2054590_2055358_+\|tyrosine-protein-phosphatase	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.88344e-144
NZ_CP047852.1\|WP_000635623.1\|2042002_2042581_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|171871	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.76981e-127
NZ_CP047852.1\|WP_000186287.1\|2044029_2044662_+\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	2.10568e-108
NZ_CP047852.1\|WP_000930650.1\|2039179_2040430_+\|histidinol-dehydrogenase	gnl\|CDD\|172308	PRK13770, PRK13770, histidinol dehydrogenase; Provisional.	0
NZ_CP047852.1\|WP_000653261.1\|2051813_2052374_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|376089	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain. IcaR belongs to the tetracycline repressor (TetR) family of proteins, which are involved in a wide variety of gene regulations. It binds to a 42 bp region immediately upstream of the icaA gene. This entry represents the C-terminal domain which is involved in dimerization.	2.88245e-28
NZ_CP047852.1\|WP_000639191.1\|2040445_2041459_+\|histidinol-phosphate-aminotransferase-family-protein	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	2.86227e-84
NZ_CP047852.1\|WP_000723831.1\|2048234_2049287_-\|acyltransferase-family-protein	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	5.38781e-113
NZ_CP047852.1\|WP_000877369.1\|2049273_2050146_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	gnl\|CDD\|188448	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase. A common motif in bacterial biosynthesis of polysaccharide for export is modification that follows polymerization. This model describes a subfamily of polysaccharide N-deacetylases that acts on poly-beta-1,6-N-acetyl-D-glyscosamine as produced by Staphylococcus epidermidis and S. aureus. The end product in these species is designated polysaccharide intercellular adhesin (PIA), and this gene designated icaB (intercellular adhesion protein B). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Cellular processes, Pathogenesis].	9.91129e-151

>NZ_CP047852.1|WP_072470764.1|2045745_2047788_+|YSIRK-domain-containing-triacylglycerol-lipase-Lip1
MKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLNKDQLKDDKKSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNETEIEKVQPQQNNQANDKITNYNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGTKELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRLDLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGIYKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNHDNMISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPNESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKALNSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTKATDKIQKGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKLTDTKQA
>NZ_CP047852.1|WP_000186287.1|2044029_2044662_+|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MTNYKIDFSKGLVPAILQDNQTKQVLMLGYMNQKAFDKTIEDGVVCFYSRSKQRLWTKGETSGHTQLVKDIHVDCDNDTILIDVIPNGPTCHTGSQSCFNTEVPFSVQTLAQTVQDSAQSNNEKSYTKYLLTEGIEKITKKYGEEAFEVVIEAIKGDKKAFVSEVADELYHLFVLMHALGVDFSEIEAELARRHHKRNNFKGERQNIEQW
>NZ_CP047852.1|WP_000592607.1|2043274_2044033_+|imidazole-glycerol-phosphate-synthase-subunit-HisF
MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGNPVDLAMYYNEAGADELVFLDISKTEEGHSLMLEVIEQTASRLFIPLTVGGGIQSLDDITQLLNHGADKVSLNSSALKNPQLIKQASDKFGRQCICIAIDSYYDPERKAHYCCTHGGKKMTNIKVYDWVQQVEQLGAGELLVTSMGHDGMKQGFDIEHLANIKSLVNIPIIASGGGGNAQHFVELFDQTDVSAGLAASILHDRETTVQSIKEVIRQGGIAVR
>NZ_CP047852.1|WP_160199917.1|2042573_2043278_+|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAQEFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFATGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGMIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLK
>NZ_CP047852.1|WP_000635623.1|2042002_2042581_+|imidazole-glycerol-phosphate-synthase-subunit-HisH
MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLNQDVYFVHSYQAPMSENVIAYAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGGFIND
>NZ_CP047852.1|WP_000640266.1|2041427_2042006_+|imidazoleglycerol-phosphate-dehydratase-HisB
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
>NZ_CP047852.1|WP_000639191.1|2040445_2041459_+|histidinol-phosphate-aminotransferase-family-protein
MIYIDKNESPVTPLDEKTMTSIISATPYNLYPDAAYEQFKEAYAKFYGLSPEQIIAGNGSDELIQKLMLIMPKGPALTLNPDFFMYQAYAAQVNREIAFVDAGSDLTFDLETILTKIDEVQPSFFIMSNPHNPSGKQFDTAFLTAIADKMKALNGYFVIDEAYLDYGTAYDVELAPHILRMRTLSKAFGIAGLRLGVLISTAGTIKHIQKIEHPYPLNVFTLNIATYIFRHREETRVFLTMQRQLAEQLKQIFDTHVADKMSVFPSNANFVLTKGSAAQQLGQYIYEQGFKPRFYDEPVMKGYVRYSIATASQLKQLEEIVKEWSAKYDLSKTTKHS
>NZ_CP047852.1|WP_000930650.1|2039179_2040430_+|histidinol-dehydrogenase
MLNAQQFLNQFSLEAPLDESLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGIDQIAGPTEIALIIDDTADLDAIVYDVFAQAEHDELARTYVISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIAPEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVNDFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIRQS
>NZ_CP047852.1|WP_000944141.1|2038572_2039187_+|ATP-phosphoribosyltransferase
MLRIAIAKGRLMDSLINYLDEIEYTKLSETLKNRERQLLLSVDNIECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKPETTNYRKIATSYVHTAETYFKSKGIDVELIKLNGSVELACVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARLITNKAAYFKKSQLIEQFIRSLEMSIANA
>NZ_CP047852.1|WP_001065591.1|2037736_2038555_+|ATP-phosphoribosyltransferase-regulatory-subunit
MNNSEQLIALKESETAFLKYFNKADYELVDFSVVEKLDWKQLNHEDLQQMGERNFWQHEHQIYALRNDFTDQLLRYYSMYPTAATKVAYTGLIIRNNEAAVQVGLENYAPSLANVQQSLKLFIQFIQQQLRDNVHFVVLGHYQLLDALLDKSLQTPDILSMIEERNLSGLVTYLSTEHPIVQILKENTQQQLNVLEHYIPNDHPALVELKIWERWLHTQGYKDIHLDITAQPPRSYYTGLFIQCHFAENESRVLTGGYYKGSIEGFGLGLTL
>NZ_CP047852.1|WP_000723831.1|2048234_2049287_-|acyltransferase-family-protein
MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIILSQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSIFNKQFIENVLLGQWYGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYYPLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWNVTSFSYSLTPYNSVMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTNIFEDNTMVFLAISLLLILGLCIGVGMIFREFYIFRFIIGKQPYKLNINAY
>NZ_CP047852.1|WP_000877369.1|2049273_2050146_-|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase
MKYRKLIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLNNFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINFDDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFETHTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPVIKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD
>NZ_CP047852.1|WP_000240580.1|2050142_2050448_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD
MVKPRQREYPTLKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISILIQKWQRGRES
>NZ_CP047852.1|WP_001159430.1|2050411_2051650_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MQFFNFLLFYPVFMSIYWIVGSIYFYFTREIRYSLNKKPDINVDELEGITFLLACYNESETIEDTLSNVLALKYEKKEIIIINDGSSDNTAELIYKIKENNDFIFVDLQENRGKANALNQGIKQASYDYVMCLDADTIVDQDAPYYMIENFKHDPKLGAVTGNPRIRNKSSILGKIQTIEYASLIGCIKRSQTLAGAVNTISGVFTLFKKSAVVDVGYWDTDMITEDIAVSWKLHLRGYRIKYEPLAMCWMLVPETLGGLWKQRVRWAQGGHEVLLRDFFSTMKTKRFPLYILMFEQIISILWVYIVLLYLGYLFITANFLDYTFMTYSFSIFLLSSFTMTFINVIQFTVALFIDSRYEKKNMAGLIFVSWYPTVYWIINAAVVLVAFPKALKRKKGGYATWSSPDRGNTQR
>NZ_CP047852.1|WP_000653261.1|2051813_2052374_+|TetR/AcrR-family-transcriptional-regulator
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
>NZ_CP047852.1|WP_000659675.1|2053222_2053885_+|capsular-polysaccharide-biosynthesis-protein-CapA
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>NZ_CP047852.1|WP_000185861.1|2053901_2054594_+|polysaccharide-biosynthesis-tyrosine-autokinase
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
>NZ_CP047852.1|WP_000565312.1|2054590_2055358_+|tyrosine-protein-phosphatase
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILQGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF
>NZ_CP047852.1|WP_000926770.1|2055592_2056093_+|GNAT-family-N-acetyltransferase
MLLRKVIMQDLDQIIALENIGFSPEEAATPEALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVPTNNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKNHHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV
>NZ_CP047852.1|WP_000301924.1|2056095_2056572_+|peptide-methionine-(S)-S-oxide-reductase
MAVVYVAGGCLWGVEAFFATIPGIIHTEAGRANGRSSKLDGPYDGYAECVKLHFDDRMLTITDIMNYLFEIIDPYSVNQQGNDIGEKYRTGLYSCVDDHLIEARQFIERRKDRDQIAVEVLPLSNYIKSAEEHQQHLEKYPEDMHMCHISKDLLNKYK

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Crispr_ID: NZ_CP047852_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_12

2251756-2251889

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP047852_12

>merge|NZ_CP047852|12|2251756-2251889|PILER-CR
TATTGAAGAAGATACAAACAAAGACAAACCTAATTATCAATTCGGTGGACACAACATTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>NZ_CP047852|12|1|2251756-2251889|PILER-CR
TATTGAAGAAGATACAA	ACAAAGACAAACCTAATTATCAATTCGGTGGACACAACATTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_078064447.1\|2248851_2249154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000678764.1\|2262793_2263060_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000876655.1\|2245791_2247345_+\|gluconokinase	unknown	unknown	gnl\|CDD\|130381
NZ_CP047852.1\|WP_000841383.1\|2253015_2255805_+\|fibronectin-binding-protein-FnbB	unknown	unknown	gnl\|CDD\|371043
NZ_CP047852.1\|WP_000990133.1\|2245086_2245767_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP047852.1\|WP_000586388.1\|2240702_2242526_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP047852.1\|WP_000074022.1\|2244168_2244933_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP047852.1\|WP_000375730.1\|2259105_2259774_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NZ_CP047852.1\|WP_001154857.1\|2257538_2259113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000946334.1\|2262014_2262248_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000289136.1\|2243311_2244004_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP047852.1\|WP_000966104.1\|2260840_2262034_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP047852.1\|WP_000721337.1\|2255984_2256851_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP047852.1\|WP_000481427.1\|2247461_2248820_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
NZ_CP047852.1\|WP_001790696.1\|2249202_2249304_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000660709.1\|2238515_2239793_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP047852.1\|WP_001804927.1\|2259770_2260835_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|99734
NZ_CP047852.1\|WP_001804921.1\|2262355_2262664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001117046.1\|2242664_2243081_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|227213
NZ_CP047852.1\|WP_072470741.1\|2263343_2265152_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000586388.1\|2240702_2242526_+\|FUSC-family-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	2.9396e-88
NZ_CP047852.1\|WP_000876655.1\|2245791_2247345_+\|gluconokinase	gnl\|CDD\|130381	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. [Energy metabolism, Sugars].	0
NZ_CP047852.1\|WP_000841383.1\|2253015_2255805_+\|fibronectin-binding-protein-FnbB	gnl\|CDD\|371043	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin. This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). SdrG binds to its ligand with a dynamic "dock, lock, and latch" mechanism which represents a general mode of ligand-binding for structurally related cell wall-anchored proteins in most Gram-positive bacteria. The C-terminal part of SdrG(276-596) is integral to the folding of the immunoglobulin-like whole to create the docking grooves necessary for Fg binding. The domain is associated with families of Cna_B, pfam05738.	2.74869e-31
NZ_CP047852.1\|WP_000990133.1\|2245086_2245767_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.91306e-44
NZ_CP047852.1\|WP_000074022.1\|2244168_2244933_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.69156e-33
NZ_CP047852.1\|WP_000375730.1\|2259105_2259774_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.74819e-07
NZ_CP047852.1\|WP_000289136.1\|2243311_2244004_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	8.50652e-86
NZ_CP047852.1\|WP_000966104.1\|2260840_2262034_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.60708e-56
NZ_CP047852.1\|WP_000721337.1\|2255984_2256851_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.5142e-177
NZ_CP047852.1\|WP_000481427.1\|2247461_2248820_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	7.5428e-168
NZ_CP047852.1\|WP_000660709.1\|2238515_2239793_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.24287e-91
NZ_CP047852.1\|WP_001804927.1\|2259770_2260835_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|99734	cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.	6.40282e-50
NZ_CP047852.1\|WP_001117046.1\|2242664_2243081_+\|DUF2188-domain-containing-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	6.92552e-63
NZ_CP047852.1\|WP_072470741.1\|2263343_2265152_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0

>NZ_CP047852.1|WP_001790696.1|2249202_2249304_+|hypothetical-protein
MLLKTEQYRLAFIKFKKLMNFAFKGRYYSEKQS
>NZ_CP047852.1|WP_078064447.1|2248851_2249154_+|hypothetical-protein
MQYIALKHVYFYAENRLKYSESERYKKYIGYFRVMKGVSRHVFVRIVQAIIMKRLVYCFKLDNDEFNLKNKHKKYKPCVTRVSDDLNTIYRYISNNKIIN
>NZ_CP047852.1|WP_000481427.1|2247461_2248820_+|gluconate-permease
MFNEIWPLISVVLGIVILLVLIIGFKLNTFISLIITSMITALMLGIPLTKIMETIEKGMGSTLGHIALIFGLGAILGKLLADGGGATRIADTLIQKFGQKHVQWAMLVAAFIVGIALFFEVGLVLLIPLVFTVAKRANVSVLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANVGDVLLYGMIIAIPVTLIAGPIFNKVAQKMIPSAYTREGDISALGAQKEFTDQEMPGFGMSLLTATLPVILMLVSTITQLVTGHDKPTNLFESIIYMIGTAGTAMLIAVMFAIVTMGLMRKRKMNHIMESVTNAIYPIGMMLLIIGGGGTFKQVLIDGGVGNTIAKMFEGTEMSPILLAWIVAAVLRIALGSATVAAISTTGIVLPLLQSSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGLTVKETFLTWSLLETIISVSGIIFILFISLFV
>NZ_CP047852.1|WP_000876655.1|2245791_2247345_+|gluconokinase
MKYMIGVDIGTTSTKSVLYDENGTFIMKHQIGYDLHTPNVDVSEENPDELFDAVLMTIKYIMRESKVNQDDIKFVSFSAQMHSLIAMDQQHQRLTNNITWADNRAAKYATVINEVHDGNAIYQRTGTPIHPMSPLVKIFWMKHEWQDVFQRTAKFADIKTYIFYHLFDTYIIDYSMASATGMFNLETLDWDVGALELLGISKEMLPELVPTTYVMKGMKERYATLMGLNEDTPFVIGASDGVLSNLGVNSVGKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLTEDHYVIGGPVNNGGVVLRWLRDELLASEVETAKRLGVDPYDVLTQIAKRVKPGADGLIFHPYLAGERAPLWNANARGSFFGLTLSHKKEHMIRAALEGVLYNLYTVYLALIEVMNETPKMIKATGGFAKSEVWRQMMSDIFDTELVVPESYESSCLGACVLGLKAVGDIEDFSIVSSMVGATNNHTPIEENVTVYQEIVSIFINLSRSLTENYEQIADFQRQHIAENKTQ
>NZ_CP047852.1|WP_000990133.1|2245086_2245767_+|GntR-family-transcriptional-regulator
MMYGYPEKWLEGMTTGEGIAAELRLGIVNGHIAEGTLLTENQMAKQFNVSRSPIRDAFKLLQQNQLIQLERMGAHVLPFGEQEKKEMYDLRLMLESFAFSRVKNQERLPIVKEMKKQLEMMKVAVKFEDAESFTKHDFEFHETLIKASNHQYLNSFWSHLKPVMMALVLTSMRQRMQQNPQDFERIHHNHQVFIDAVEQYDSQILKEAFHLNFDDVGKDIEGFWLN
>NZ_CP047852.1|WP_000074022.1|2244168_2244933_+|MerR-family-transcriptional-regulator
MSNYSTGELAKLCNVTTRTIRYYDRKGILKPQGFTEGKRRVYTEQQRQTLELILLLKDLGCALSDIDMLLKGEGTLKTLNTLLTMKQQEINQQVKQQQAVLNKIKNVQYYVNEASTSPITYLKDIEHVMSKSAEMKSIRRNIWISAGIIGIIQYSSIISAILMKNKWPFLIALPFMICYGIGVTFYYQQKVAYLCPNCQHIFSPSLWQVIKAKHTATTRRFECPNCHETHYCIEVPKAHMSTEQLEISHIQHNN
>NZ_CP047852.1|WP_000289136.1|2243311_2244004_+|GTP-pyrophosphokinase-family-protein
MYVDRKPSLYLEDLRHDFKNSLSKFENGDEAFDTLLGFVELDHIYSSALKEISTKLSILDDNFNHIYKHNPIHHMERRVKEMRSLIEKLNRKGLQISAETAKEHILDIAGIRVVCNYLDDIYLIEEMLLKQEDVQLIKRKDYIQHPKENGYRSLHIVVSIPVFLAERVEVLPVEIQIRTIGMDMWASLEHKIRYKNNAETEKYRDLLKECATEITEVEDKLQQIHSEITE
>NZ_CP047852.1|WP_001117046.1|2242664_2243081_+|DUF2188-domain-containing-protein
MPFTMKGYPEKWKDFEVIKRQKAIEIANAMLKEGYLEKDVVPIAAKKAKDWYRALSKEEIKALEEENFVQFHTATMEKTEVDSEYATTDNEEHIQEQSNQDKSYFDSESIGNQSGGVRQREPLMDGAHPKVVESFKDV
>NZ_CP047852.1|WP_000586388.1|2240702_2242526_+|FUSC-family-protein
MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKSAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSDENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADIRKPLYSKRIYQNLTLDSIVFRSTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHFELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
>NZ_CP047852.1|WP_000660709.1|2238515_2239793_+|MFS-transporter
MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK
>NZ_CP047852.1|WP_000841383.1|2253015_2255805_+|fibronectin-binding-protein-FnbB
MKSNLRYGIRKHKLGAASVFLGTIIVVGMGQEKEAAASEQNNTTVEESGSSATESKASETQTTTNNVNTIDETQSYSATSTEQPSQSTQVTTEEAPKTVQAPKVETSRVDLPSEKVADKETTGTQVDTAQPSNVSEIKPRVKRSTDVAVVAGEAKATGTDVTNKVTVENGSEIVGHKQDMNVVNPHNAERVTLKYKWKFGEGIKEGDYFDFTLSDNVETHGISTLRKVPEIKSSTEDKVMANGQVIDERKIRYTFTDYINSKKDLTAELNLNLFIDPTTVTKQGKQNVKVTLGNKEIEKEFDIKYLYGVKDRMGVTVNGRIHTLNKEEGRFSHFAYVKPNNQSLTSVTVSGQVTKGNKSGASNPSVKVYKHIGSDELAESVYAKLDDANKFEDVTNKVNLSYTGDGGYSLDFSDLDNSKDYVIKYEGEYDQNAKDLNFRTHLSGYHKNYPYYPNYYYPVQLTWNNGVAFYSNNAQGDGKDKPKEPIIEHSTPIELEFKSEPPVEKHELTGTIEESNDSKPIDFEYHTAVEGAEGHVEGIVETEEDSIHVDFEESTHENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEDSTKGIVTGAVSDHTTVEDTKEYTTESNLIELVDELPEEHGQAQGPIEEITENNHHISHSGLGTENGHSNYGVIEEIEENSHVDIKSELGYEGGQNSGNQSFEEDTEEDKPKYEQGGNIIDIDFDSVPQIHGFNKHNEIIEEDTNKDKPNYQFGGHNSVDFEEDTLPKVSVQNEGQQTIEEDTTPPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPSEPETPTPPTPEVPAEPGKPVPPAKEEPKKPSKPVEQGKVVTPVIEINEKVKAVAPTKQKQSKKSELPETGGEESTNKGMLFGGLFSILGLALLRRNKKNHKA
>NZ_CP047852.1|WP_000721337.1|2255984_2256851_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKKIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGRHKRAIEDHFDSQKELEMVLKEKGKSELLEKVQYSTELANIFYVRQKEQKGLGHAISSARQFIGNEPFAVLLGDDIVESEVPAVKQLIDVYEETGHSVIGVQEVPEADTHRYGIIDPLTKNGRQYEVKKFVEKPAQGTAPSNLAIMGRYVLTPEIFDYLKTQKEGAGNEIQLTDAIERMNNDNQVYAYDFEGERYDVGEKLGFVKTTIEYALKDDSMREELTRFIKELGL
>NZ_CP047852.1|WP_001154857.1|2257538_2259113_+|hypothetical-protein
MQEFIVNTDKSCKNYSLLNNLYEIIFENIDDNQNNNITSKYPEEILEFLLKTPEFYSEIYNTKESVIELKAISLRLSRHHMKRANFIEQVARLVAEMMYMSDIKITIRHFEYADRPSIMVINRVIQILQIKYQLKKCLYIEMNDFSSHDELLLNFRNNLFKNLHKKNVFFKENVSIINKKKELLFEIDESYESLDAALLEQNYELAYLILKKEYTDKNMTKQMYYRWLGVISANLSISNEANNLLLKAVQNSENIIDKARNTYIYTLHLTKRLNKPEESIIIIKKMLEELEMNKDIEDIENYLHEKAWLKNGLSLAQTINSKNIHRDAVEIIKNEMDSYKSIAESNNFKFVYLKYNLLANIAFLLEILNEYKKAENFWEMAFGKLFLDENNNLDGVKSLSYRLGVLNIKMDNFNKAKYYLKKAEKLAYKHKNDFHVLNINYALSYIDYLEGNVDKDKIKQNIKLAVFLNDDFYKVSFEDILNGLDPRPPKLKLISYVPNIDLSFVPKVDMNEKLDTFNWRGKHG
>NZ_CP047852.1|WP_000375730.1|2259105_2259774_+|class-I-SAM-dependent-methyltransferase
MDRNIDVAILKIYNKLFENGFVEKKIVDMFNFYQYEKKLEHHYFIPDTSITKVMSRILYLLGQNFTNKFILGAGIYAGNAISWLSYDVLENKNGFMLGVDISEEAITLARKNLSIFNQENFEVKVENIFFTIEALAKESIDIFYLDIDSKEKGKSEYKDIVERIYPKIKEKGLILAHDINEKKFEEDMSGFEKFIINSSLYKGINIDIDNCGLLLIRKEESM
>NZ_CP047852.1|WP_001804927.1|2259770_2260835_+|pyridoxal-phosphate-dependent-aminotransferase
MIHTNRIIRMDFGEPKGLSISRNTLSCAAHYLLEGKNEYSPLKGEGYLLEKINSFINEYYSINTNKEEVLVTNGGLFGIQLVVEYLRNKGISKIYIPNPGFPPYQHLNVDQLNIIPYQATSSDIMFKEINRINNSEDGIVIIITSPNNPNGVMLNPVSFNKIDLSKKNNFFILDNSFHNYSYKYQPRIIHDDNVFNVFSFSKSHALAAYRIGFILNKNVNHINDLAKIQWNKTLSVSGISQMMAYGALDSKNDLIENNEKVKSQIKYAEKFLNSKGIVTNNPDGGFFLWLNTNDIDTRQLSEIAYEKYGISIMEGRHFGSEGVNYIRINCALDKESLEEGLKRLVDAFNYFYER
>NZ_CP047852.1|WP_000966104.1|2260840_2262034_+|MFS-transporter
MLYLEVLKNRNFTYLLIGNFLRRSCFVLFSLQIIWFTVELTNQSSLKLSMMVMSQTLPFIIFGIFGGAYSDKHNKKKILYLSDLILSWIIIIIPLLAITSNLNYLTLLTISTAITIINCYTDPAFRAILPEIIDEEHLATSNALIDSLQRGSNIILPALIGVIVILVGNVGVFFICSILLFLGFIFNALLKYTNNNMIDRHSKEDFSETWEFLKKSKEIPFIIIIQFACILINTGLWRVALPLFISNILKEGVGVYGLATSCLGIASLLMSLIMGLLSEKRLIFKFSIGVLVWGIGLSIINVFPSVAILYIGATLVGLGQSIEGLTRSVAIQIKTPNHLMGKVFSISSTSNYAADTLSLGLISIIIPLLSLSNIFISGGAIISMLSLAGLKFVKKSM
>NZ_CP047852.1|WP_000946334.1|2262014_2262248_+|hypothetical-protein
MLRSLCKHNRILINAIKVGIEMKYKISLAYNLAIIIGSLIILCILISRGYDIYVILIPILTILASLINLICDIKKHK
>NZ_CP047852.1|WP_001804921.1|2262355_2262664_-|hypothetical-protein
MTVNIVFSIVFCISMVILGIYVAITKDFTLISYINQTTIADKHKNQIAYIFALCISLITVFLMSPILCFEYDFIVLAFLFLTIALLLIALFYVCFYKITKYP
>NZ_CP047852.1|WP_000678764.1|2262793_2263060_-|hypothetical-protein
MKGSKQILLIMGIISLIVLFIFTLFIMAQYAKHYEQKSDSSNAHTLNSSSAIIEQHTMSNLASLDLYAPVRNITSSRDIHPIYFMTKD
>NZ_CP047852.1|WP_072470741.1|2263343_2265152_-|phospho-sugar-mutase
MHFQTHLLYNTCEKYCLGAVFFYFWGVFLYNSLHKCKGFNFHILLSLTEILKGCLATMDKELWIERANDSLVKHFYEQQSDIEQREGFESKLTFGTAGIRGKFGLGEGRLNKFTIEKLALGLARYLNAQTNNPTIVIHYDIRHLSTEFAQIIANVLANHQITVYLPDTYKTTPELSFAVRNLNTTAGIMITASHNPKDYNGIKVYGSDGAQLSTDASELASRYIEEVGDPLQIDIPSSKQNTSYIKPFPKSVTDDYMKHIQNMIGYIPKSDLQVVFTSLHGTSVPIVPELLKSLNFNQFNLVEAQCKPDPNFSSVQSANPEDHRAFDQAVELANKSHADLLISTDPDADRLGIAERDAHGHITYFNGNQIGALLLNYRIQQTSQLRHRLMIQSIVSSELTKSLARYNNVEYKEVLTGFKFIAQEIRQLDDHQNMIFAFEESYGFLSEPFVRDKDAVQIVPLIIKYASELKLYGKTLKDELEQIYQTVGRHEDTLFSHTLEGLEGKKKIESIMTHFRSNPPQEIQGLKVKAIEDYLTSEVYHLDKDTTSQINSPKSNVIRVLFDEGFIALRPSGTEPKIKLYVSLKCPNFDDVAQKINAMIFS

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Crispr_ID: NZ_CP047852_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_13

2297192-2297278

Orphan

Consensus_repeat	Method
CCCACCCCAACTTACATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_13

>merge|NZ_CP047852|13|2297192-2297278|CRISPRCasFinder
CCCACCCCAACTTACATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCCACCCCAACTTGCATTGTCTGTAGAA

>NZ_CP047852|13|12|2297192-2297278|CRISPRCasFinder
CCCACCCCAACTTACATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCC
CCCACCCCAACTTGCATTGTCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000074045.1\|2290500_2290767_+\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|226600
NZ_CP047852.1\|WP_001096374.1\|2303833_2305591_-\|beta-lactam-sensor/signal-transducer-BlaR1	unknown	unknown	gnl\|CDD\|226672
NZ_CP047852.1\|WP_001076673.1\|2291122_2292199_+\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP047852.1\|WP_000026189.1\|2294273_2295461_+\|DHA-family-class-C-beta-lactamase	unknown	unknown	gnl\|CDD\|225371
NZ_CP047852.1\|WP_000160701.1\|2300384_2301200_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NZ_CP047852.1\|WP_000143502.1\|2287683_2289261_+\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223147
NZ_CP047852.1\|WP_001291515.1\|2299358_2299958_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226851
NZ_CP047852.1\|WP_000923526.1\|2292446_2293109_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226970
NZ_CP047852.1\|WP_001284656.1\|2303463_2303844_-\|penicillinase-repressor-BlaI	unknown	unknown	gnl\|CDD\|226207
NZ_CP047852.1\|WP_000700928.1\|2295522_2296875_-\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
NZ_CP047852.1\|WP_001030706.1\|2297541_2299179_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP047852.1\|WP_000690636.1\|2302606_2303200_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP047852.1\|WP_000790709.1\|2301192_2302635_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP047852.1\|WP_000732082.1\|2289428_2289884_-\|DUF1307-domain-containing-protein	unknown	unknown	gnl\|CDD\|227145
NZ_CP047852.1\|WP_000733283.1\|2305697_2306543_+\|BlaZ-family-penicillin-hydrolyzing-class-A-beta-lactamase-PC1	unknown	unknown	gnl\|CDD\|225242
NZ_CP047852.1\|WP_000072147.1\|2293101_2293878_+\|iron-export-ABC-transporter-permease-subunit-FetB	unknown	unknown	gnl\|CDD\|223467
NZ_CP047852.1\|WP_001791736.1\|2299961_2300102_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_160199924.1\|2300181_2300337_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373275
NZ_CP047852.1\|WP_000587619.1\|2290243_2290501_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_CP047852.1\|WP_000072440.1\|2286739_2287489_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000074045.1\|2290500_2290767_+\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|226600	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown].	5.86186e-27
NZ_CP047852.1\|WP_001096374.1\|2303833_2305591_-\|beta-lactam-sensor/signal-transducer-BlaR1	gnl\|CDD\|226672	COG4219, MecR1, Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms].	1.95824e-138
NZ_CP047852.1\|WP_001076673.1\|2291122_2292199_+\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	2.17555e-172
NZ_CP047852.1\|WP_000026189.1\|2294273_2295461_+\|DHA-family-class-C-beta-lactamase	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.98964e-90
NZ_CP047852.1\|WP_000160701.1\|2300384_2301200_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	4.98862e-58
NZ_CP047852.1\|WP_000143502.1\|2287683_2289261_+\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	8.23388e-176
NZ_CP047852.1\|WP_001291515.1\|2299358_2299958_+\|hypothetical-protein	gnl\|CDD\|226851	COG4430, COG4430, Uncharacterized protein conserved in bacteria [Function unknown].	4.72519e-92
NZ_CP047852.1\|WP_000923526.1\|2292446_2293109_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226970	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	8.98444e-130
NZ_CP047852.1\|WP_001284656.1\|2303463_2303844_-\|penicillinase-repressor-BlaI	gnl\|CDD\|226207	COG3682, COG3682, Predicted transcriptional regulator [Transcription].	4.4428e-45
NZ_CP047852.1\|WP_000700928.1\|2295522_2296875_-\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	2.13754e-179
NZ_CP047852.1\|WP_001030706.1\|2297541_2299179_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	3.18522e-53
NZ_CP047852.1\|WP_000690636.1\|2302606_2303200_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	4.70675e-56
NZ_CP047852.1\|WP_000790709.1\|2301192_2302635_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.34332e-25
NZ_CP047852.1\|WP_000732082.1\|2289428_2289884_-\|DUF1307-domain-containing-protein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	5.59595e-52
NZ_CP047852.1\|WP_000733283.1\|2305697_2306543_+\|BlaZ-family-penicillin-hydrolyzing-class-A-beta-lactamase-PC1	gnl\|CDD\|225242	COG2367, PenP, Beta-lactamase class A [Defense mechanisms].	5.48205e-62
NZ_CP047852.1\|WP_000072147.1\|2293101_2293878_+\|iron-export-ABC-transporter-permease-subunit-FetB	gnl\|CDD\|223467	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.94139e-102
NZ_CP047852.1\|WP_160199924.1\|2300181_2300337_+\|hypothetical-protein	gnl\|CDD\|373275	pfam14762, HPS3_Mid, Hermansky-Pudlak syndrome 3, middle region. This domain is downstream of the N-terminus of these vertebrate proteins. This region carries a number of tyrosine sorting motifs and one of two di-leucine sorting boxes at residues 542-548 well as a peroxisomal matrix targetting motif at residues 614-623 in human HPS3. There is also reference to a human Mendelian disease at MIM:614072.	0.00228608
NZ_CP047852.1\|WP_000587619.1\|2290243_2290501_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	2.21015e-14

>NZ_CP047852.1|WP_000700928.1|2295522_2296875_-|carboxylesterase/lipase-family-protein
MKINTTGGQIHGITQDGLDIFLGIPYAEPPVHDNRFKHSTLKTQWSEPIDATEIQPIPPQPDNKLEDFFSSQSTTFTEHEDCLYLNIWKQHNDQTKKPVIIYFYGGSFENGHGTAELYQPAHLVQNNDIIVITCNYRLGALGYLDWSYSNKDFHSNNGLSDQINVIKWVHQFIESFGGDANNITLMGQSAGSMSILTLLKIPDIEPYFHKVVLLSGALRLDTLESARNKAQHFQKMMLDYLDTDDVTSLSTDDILMLMAKLKQSRGPSKGLDLIYAPIKTDYIQNDYPTTKPIFACYTKDEGDIYITSEQKKLSPQRFIDIMELNDIPLKYEDVQTAKQQSLAITHCYFKQPMKQFLQQLNIQDSNAQLWLAEFAWHDTSSAHYRSAYHILDMVFWFGNLQILAAHQYPTTAHLKFLSRQMQNDLANFAKSGKMPWPMYHNERRYYRTYQ
>NZ_CP047852.1|WP_000026189.1|2294273_2295461_+|DHA-family-class-C-beta-lactamase
MSIMRLFTFILSIFIVGMVEMMVAGIMNLMSQDLHVSEAVVGQLVTMYALTFAICGPILVKLTNRFSSRPVLLWTLLIFIIGNGIIAVAPNFSILVVGRIISSAAAALIIVKVLAITAMLSAPKNRGKMIGLVYTGFSGANVFGVPIGTVIGDLVGWRYTFLFLIIVSIIVGFLMMIYLPKDQEIQRGPVNHEAPSHENHVTSKILRPAEVAKYLIITFLVLIANSVTFVFINPLILSNGHDMSFVSLALLVNGIAGVIGTSLGGIFSDKITSKRWLMISVSIFIVMMLLMNLILPGSGLLLAGLFIWNIMQWSTNPAVQSGVIQHVEGDTSQVMSWNMSSLNAGIGVGGIIGGLVMTHVSVQAITYTSAIIGALGLIVVFTLKNNHYAKTFKSS
>NZ_CP047852.1|WP_000072147.1|2293101_2293878_+|iron-export-ABC-transporter-permease-subunit-FetB
MSNTALGLTALLLVIPIIISYKEGLHIIKDLIVATLRAVVQLIILGFLLHYIFKINDKWLLILCVLVIIINASWNTISRASPVMHHVFWISFLAIFIGTALPLAGTIATGAIQFTANEVIPIGGMLANNGLIAINLAYQNLDRAFVQDGTNIESKLSLAATPKLASKGAIRESIRLAIVPTIDSVKTYGLVSIPGMMTGLIIGGVPPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQFFNARHQLVARNTDVKSES
>NZ_CP047852.1|WP_000923526.1|2292446_2293109_+|ATP-binding-cassette-domain-containing-protein
MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVGLGHYQLSSEVENMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
>NZ_CP047852.1|WP_001076673.1|2291122_2292199_+|M42-family-metallopeptidase
MNQSVKLLKHLTDVNGIAGYEMQVKEAMRNYIEPVSDQIIEDNLGGIFGKKNAENGQYSIMISGHMDEVGFMVTKIDKHGFISFTPVGGWWNQVMLSQKVTITTDSGKEIRGIIGSKPPHVLTPEERKKPMEIKNMFIDIGVSSKEEAEEAGVEVGNMVTPYSEFEVLANDKYLTAKAFDNRYGCALAVEVLKRLKDENIGINLYSGATVQEEVGLRGAKVAANTIKPDLAIAVDVGIAYDTPGMSGQTSDSKLGGGPVVIMMDATSIAHQGLRKHIKDVAKEHNIEVQWDTTPGGGTDAGSIHVANEGIPTMTIGVTLRYMHSNVSVLNVDDYENSIRLVTEIVRSLNDESYKNIMW
>NZ_CP047852.1|WP_000074045.1|2290500_2290767_+|Txe/YoeB-family-addiction-module-toxin
MSNYTVKIKNSAKSDLKKIKHPYLKKTFIEIVETLKNDPYKITQSFEKLEPKYLERYSRRINLQHRVVYTIDDRNKVVLILSAWSHYD
>NZ_CP047852.1|WP_000587619.1|2290243_2290501_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETMYLVSTGTMDKVREREKDSSGTTNIDDIDWDNL
>NZ_CP047852.1|WP_000732082.1|2289428_2289884_-|DUF1307-domain-containing-protein
MKKLCSLIVVALVCIIALSACGKEQTKTYEGDVSGKHVLTSITYKDDKVLKQSTINTIKYDDLGMDKDEAKKLFAKSESIFKDLKGVKYKVDYKDKKAIEHLDIDYTEVDMKKLNKRLGVSTKENKDISFEKLEKQLKHRGLKEKDKMDDK
>NZ_CP047852.1|WP_000143502.1|2287683_2289261_+|FMN-binding-glutamate-synthase-family-protein
MTFLTVMQFIVNIIVVGFMLTVIVIGLIWLIKDKRQSQHSVLRNYPLLARIRYISEKMGPELRQYLFSGDNEGKPFSRNDYKNIVLAGKYNSRMTSFGTTKDYQDGFYIQNTMFPMQRNEISVDNTTLLSTFIYKIANERLFSREEYRVPTKIDPYYLSDDHAIKLGEHLKHPFILKRIVGQSGMSYGALGKNAITALSKGLAKAGTWMNTGEGGLSEYHLKGNGDIIFQIGPGLFGVRDKEGNFSEGLFKEVAQLSNVRAFELKLAQGAKTRGGHMEAEKVNEEIAKIRNVEPYKTINSPNRYEFIHNAEDLIRFVDQLQQLGQKPVGFKIVVSKVSEIETLVRTMVELDKYPSFITIDGGEGGTGATFQELQDGVGLPLFTALPIVSGMLEKYGIRDKVKLAASGKLVTPDKIAIAIGLGADFVNIARGMMISVGCIMSQQCHMNTCPVGVATTDAKKEKALIVGEKQYRVTNYVTSLHEGLFNIAAAVGVSSPTEITADHIVYRKVDGELQTIHDYKLKLIS
>NZ_CP047852.1|WP_000072440.1|2286739_2287489_-|hypothetical-protein
MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVFLTFGLVAVFTQQAPWGFSFPISMNISYILAVIISLAIFRRMHEDAFVPMIRTQIIASTKYKWHILISFTLSVVLFLLLNYFDIFALNVDAFTVFDIYPLIRDYGSISLIVMLWLTIILNTLICQLIFRHILIQELSRIMPLKITIVLSIILETLFYYPYINTWWEFIPALILASSATYLYLKSNRNFMVSYFSQLAVILVLHIFM
>NZ_CP047852.1|WP_001030706.1|2297541_2299179_-|APC-family-permease
MNKDKQLHNDKINLSQLVLLGLGSLIGSGWLFGAWEASSIAGPAAIISWVLGFLVIGTIAYNYIEIGTMFPQSGGMSNYAQYTHGSLLGFIAAWANWVSLVTIIPIEAVSAVQYMSSWPWHWAKPMRYLMENGSISTYGLLAVYLIIVIFSLLNYWSVKLLTSFTSLISVFKLGVPMLTIIMLMLSGFDTSNYGHSASTFMPYGSAPIFAATTASGIIFSFNSFQTIINMGSEIKNPEKNIARGIAISLSISAVLYIILQSTFITSMPHSMLQHSGWNGINFNSPFADLAILLGINWLAILLYIEAFVSPFGTGVSFVAVTGRVLRAMEKNGHIPKFLGKMNEKYHIPRVAIIFNAIISMIMVTLFRDWGTLAAVISTATLVAYLTGPTTVIALRKMGPTMTRPFRAKILKVMAPLSFVLASLAIYWAMWPTTAEVILIIILGLPIYFFYEYRMNWRNTKKQIGGSLWIIVYLIVLSILSFIGSKEFKGLNMIHYPFDFIVIIIVALIFYYIGTTSSFESVYFRRATRINTKMRESLNNESKSSH
>NZ_CP047852.1|WP_001291515.1|2299358_2299958_+|hypothetical-protein
MSEKQSNEQVEAFLNKESQWQEEYKYLRALIFNETELEEAYKWMHPCYTLNNKNVVLIHGFKNYVALLFHKGAILEDKYHTLIQQTEKVQAARQLRFENLTEIQARSEEIKYYLAEAIKAEKAGKKVEMKKTEEYVIPKELEAKFEEMPQLESSFYKLTPGRQHQYIYHIGQAKRSETRQKRVEKYINQILEGKGMHDK
>NZ_CP047852.1|WP_001791736.1|2299961_2300102_+|hypothetical-protein
MSKAYRLYNNIQDDTKQPMAHAVGCFFRCVCHGQHFDVGIPLQAWE
>NZ_CP047852.1|WP_160199924.1|2300181_2300337_+|hypothetical-protein
MDVCPPVTMDACALLQKFDFCNNISHFRHFFAIKQPIERLLLYLIYENDFT
>NZ_CP047852.1|WP_000160701.1|2300384_2301200_-|AAA-family-ATPase
MTKHQNFIETKEYKRFAEFCDACIKYQYIGICYGQPGVGKTLSSRYYTNWNTIEKQVNHRGWEDLASKTTDDILSVNKIFYTAPAEKQTRLSNDLYSISASIDLGQKLHIVNKYGHDHSKHYSDMFKYIDLIIVDEIDRLKVQHLEQLRAIYDEHNLAMIFIGMPGIEKKLSRYPQLYSRIGFAHEFDNLSKDETHHILEYKWQDLGFDLKLEDFTDYEAITTIIKITKGNFRLIHRLFAQIDRIMDINGLDKISTEVVETARDSLVIGIR
>NZ_CP047852.1|WP_000790709.1|2301192_2302635_-|DDE-type-integrase/transposase/recombinase
MKNKEKYLTNFSEAKRKEATQKYNIIKPFILGNQSLSSISKNKDIALSTLYRWNKLYKEEGLTGLIHNTRVDKGDHKLEQNIIDEIKRLSLKNKRNSIATIHRKIVNYCIENNFDKPSYKQVYSIIKAMPKSVIDFSHQGEKYYQNKYDLIQIRESSRPNEIWQADHTLLDIYILDQTGNINRPWLTIIMDDYSRAIAGYFISFEAPNAQNTALTLHQAIWNKNNTNWPVCGIPEKFYTDHGSDFTSHHMEQVAIDLKINLMFSKVGVPRGRGKIERFFQTVNQTFLEQLPGYINNNDTPSDLIDFQNFEEKLRYFLIEDYNQKEHSVIQSTPINRWNSNHFFPNMPSSLEQLDLLLLEIPKSRKIHSDGIHFQGFRYSNTNLAAYVGEYVLIRYNPNDMAEIRVFYRDEFLCTAISPDLADYSIDIKDIQHARSQRRKHLKQNIASPSTTDLIKEEKNYGYSPQETTKNVKKLKRYRND
>NZ_CP047852.1|WP_000690636.1|2302606_2303200_-|recombinase-family-protein
MKIGYARVSTGLQNLNLQEDRLNTHGCEKIFNDHMSGSKSKRPGLDKAIEFARSGDTIVVWRLDRLGRNMEDLITLVNELNERGVSFHSLEENITMDKSSSTGQLLFHLFAAFAEFERNLILERSSAGRIAARARGRYGGRPEKLNKQDLNLLKTLYDNGTPIKTIAEQWQVSRTTIYRYLNKLEDKEDEKQGEVSN
>NZ_CP047852.1|WP_001284656.1|2303463_2303844_-|penicillinase-repressor-BlaI
MANKQVEISMAEWDVMNIIWGKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
>NZ_CP047852.1|WP_001096374.1|2303833_2305591_-|beta-lactam-sensor/signal-transducer-BlaR1
MAKLLIMSIVSFCFIFLLLLFFRYILKRYFNYMLNYKVWYLTLLAGLIPFIPIKFSLFKFNNVNNQAPTVESKSHDLNHNINTTKPIQEFATDIHKFNWDSIDNICTVIWIVLVIILSFKFLKALLYLKYLKKQSLYLNENEKNKIDTILFNHQYKKNIVIRKAETIQSPITFWYGKYIILIPSSYFKSVIDKRLKYIILHEYAHAKNRDTLHLIIFNIFSIIMSYNPLVHIVKRKIIHDNEVEADRFVLNNINKNEFKTYAESIMDSVLNVPFFNKNILSHSFNGKKSLLKRRLINIKEANLKKQSKLILIFICIFTFLLMVIQSQFLMGQSITDYNYKKPLHNDYQILDKSKIFGSNSGSFVMYSMKKDKYYIYNEKESRKRYSPNSTYKIYLAMFGLDRHIINDENSRMSWNHKHYPFDAWNKEQDLNTAMQNSVNWYFERISDQIPKNYTATQLKQLNYGNKNLGSYKSYWMEDSLKISNLEQVIVFKNMMEQNNHFSKKAKNQLSSSLLIKKNEKYELYGKTGTGIVNGKYNNGWFVGYVITNHDKYYFATHLSDGKPSGKNAELISEKILKEMGVLNGQ
>NZ_CP047852.1|WP_000733283.1|2305697_2306543_+|BlaZ-family-penicillin-hydrolyzing-class-A-beta-lactamase-PC1
MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF

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Crispr_ID: NZ_CP047852_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_14

2603402-2603487

Orphan

Consensus_repeat	Method
ACTAATGATACGCAAACATCAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047852_14

>merge|NZ_CP047852|14|2603402-2603487|CRISPRCasFinder
ACTAATGATACGCAAACATCAGTTGGCCCAGTTGCAAACAATAAAGCTAAAGATATGCAAACTAATGATACGCAAAAATCAGTTGG

>NZ_CP047852|14|13|2603402-2603487|CRISPRCasFinder
ACTAATGATACGCAAACATCAGTTGG	CCCAGTTGCAAACAATAAAGCTAAAGATATGCAA
ACTAATGATACGCAAAAATCAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000894032.1\|2593789_2594722_+\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP047852.1\|WP_000083807.1\|2607828_2609367_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP047852.1\|WP_000958531.1\|2584578_2585643_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_CP047852.1\|WP_000884735.1\|2578684_2579872_+\|UDPGP-type-1-family-protein	unknown	unknown	gnl\|CDD\|133036
NZ_CP047852.1\|WP_001237497.1\|2580750_2582094_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP047852.1\|WP_000908175.1\|2612084_2612867_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP047852.1\|WP_000370926.1\|2612934_2613792_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP047852.1\|WP_000334465.1\|2610047_2611853_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP047852.1\|WP_001792784.1\|2614449_2614608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000495671.1\|2615833_2616925_-\|lytic-regulatory-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001292149.1\|2605215_2605650_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
NZ_CP047852.1\|WP_000521495.1\|2594748_2596104_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP047852.1\|WP_000347896.1\|2592978_2593788_+\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_CP047852.1\|WP_000927342.1\|2605661_2607794_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP047852.1\|WP_000167867.1\|2591881_2592790_+\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_CP047852.1\|WP_000636857.1\|2582192_2582666_+\|multidrug-efflux-transporter-SepA	unknown	unknown	gnl\|CDD\|374975
NZ_CP047852.1\|WP_000648738.1\|2604109_2605216_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP047852.1\|WP_000047255.1\|2579890_2580574_+\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_CP047852.1\|WP_001802298.1\|2615287_2615392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001141010.1\|2582988_2584431_+\|multidrug-efflux-MFS-transporter-LmrS	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000894032.1\|2593789_2594722_+\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
NZ_CP047852.1\|WP_000083807.1\|2607828_2609367_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP047852.1\|WP_000958531.1\|2584578_2585643_+\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	6.43129e-115
NZ_CP047852.1\|WP_000884735.1\|2578684_2579872_+\|UDPGP-type-1-family-protein	gnl\|CDD\|133036	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.	2.43588e-149
NZ_CP047852.1\|WP_001237497.1\|2580750_2582094_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.04386e-43
NZ_CP047852.1\|WP_000908175.1\|2612084_2612867_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.10326e-104
NZ_CP047852.1\|WP_000370926.1\|2612934_2613792_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.08235e-59
NZ_CP047852.1\|WP_000334465.1\|2610047_2611853_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP047852.1\|WP_001292149.1\|2605215_2605650_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP047852.1\|WP_000521495.1\|2594748_2596104_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP047852.1\|WP_000347896.1\|2592978_2593788_+\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.13611e-103
NZ_CP047852.1\|WP_000927342.1\|2605661_2607794_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.55541e-67
NZ_CP047852.1\|WP_000167867.1\|2591881_2592790_+\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	9.8301e-146
NZ_CP047852.1\|WP_000636857.1\|2582192_2582666_+\|multidrug-efflux-transporter-SepA	gnl\|CDD\|374975	pfam17080, SepA, Multidrug Resistance efflux pump. SepA is a drug efflux protein that is involved in bacterial multidrug resistance. It is predicted to have four transmembrane domains.	3.20059e-30
NZ_CP047852.1\|WP_000648738.1\|2604109_2605216_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP047852.1\|WP_000047255.1\|2579890_2580574_+\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.41003e-66
NZ_CP047852.1\|WP_001141010.1\|2582988_2584431_+\|multidrug-efflux-MFS-transporter-LmrS	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.34465e-81

>NZ_CP047852.1|WP_000521495.1|2594748_2596104_+|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_CP047852.1|WP_000894032.1|2593789_2594722_+|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK
>NZ_CP047852.1|WP_000347896.1|2592978_2593788_+|TIGR00159-family-protein
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
>NZ_CP047852.1|WP_000167867.1|2591881_2592790_+|arginase
MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIEKFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGETLL
>NZ_CP047852.1|WP_000958531.1|2584578_2585643_+|P-loop-NTPase
MLTVDQVKELVGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKLAMAQLGGAPQLDLQMAVVNALKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEGLLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDEKPGIKGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDIEYLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSDDRLGKIYSSIAQKVIAATNK
>NZ_CP047852.1|WP_001141010.1|2582988_2584431_+|multidrug-efflux-MFS-transporter-LmrS
MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIALVAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALILSMVIIYLFIRRQFNITNALLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRKF
>NZ_CP047852.1|WP_000636857.1|2582192_2582666_+|multidrug-efflux-transporter-SepA
MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
>NZ_CP047852.1|WP_001237497.1|2580750_2582094_+|MFS-transporter
MRLKSIITVIALILIMFMSAIESSIISLALPTIKQDLNAGNLISLIFTAYFIALVIANPIVGELLSRFKIIYVAIAGLLLFSIGSFMCGLSTNFTMLIISRLIQGFGSGVLMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWHWLFYINIPIAIIAIILVIWTFHFPEEETVAKSKFDTKGLTLFYVFIGLIMFALLNQQLLLLNFLSFILAIVVAMCLFKVEKHVSSPFLPVVEFNRSITLVFITDLLTAICLMGFNLYIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHRIEAKLSRKVIYLLSFTLLLVSSIIISFGIKLPVLIAFVLILAGLSFGYIYTKDSVIVQEETSPLQMKKMMSFYGLTKNLGASIGSTIMGYLYAIQSGIFGPNLHNVLSAVAVISIGLIVLWVVFFKEQSSQSKE
>NZ_CP047852.1|WP_000047255.1|2579890_2580574_+|hemolysin-III-family-protein
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM
>NZ_CP047852.1|WP_000884735.1|2578684_2579872_+|UDPGP-type-1-family-protein
MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEIEGVSLFELQANQLKTLNHQSGHTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQPKPGESVGRLVNVDCKDTVLEYSELDPEVANQFNNANIGIHAFKLGFILNAVNRELPYHLAIKNLKQLDENFGVIEQPTLKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKEGKDSVATATEDLRRMGLI
>NZ_CP047852.1|WP_000648738.1|2604109_2605216_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINTLAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP047852.1|WP_001292149.1|2605215_2605650_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP047852.1|WP_000927342.1|2605661_2607794_-|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFVVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP047852.1|WP_000083807.1|2607828_2609367_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP047852.1|WP_000334465.1|2610047_2611853_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP047852.1|WP_000908175.1|2612084_2612867_+|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKIPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP047852.1|WP_000370926.1|2612934_2613792_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAE
>NZ_CP047852.1|WP_001792784.1|2614449_2614608_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_CP047852.1|WP_001802298.1|2615287_2615392_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP047852.1|WP_000495671.1|2615833_2616925_-|lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK

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Crispr_ID: NZ_CP047852_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047852_15

2615727-2615817

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP047852_15

>merge|NZ_CP047852|15|2615727-2615817|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTG

>NZ_CP047852|15|14|2615727-2615817|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047852.1\|WP_000808817.1\|2620714_2620945_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_001123303.1\|2623446_2623860_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP047852.1\|WP_001127960.1\|2619745_2620684_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP047852.1\|WP_001024093.1\|2618644_2619310_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP047852.1\|WP_000927342.1\|2605661_2607794_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP047852.1\|WP_000908175.1\|2612084_2612867_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP047852.1\|WP_000521495.1\|2594748_2596104_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP047852.1\|WP_000370926.1\|2612934_2613792_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP047852.1\|WP_000123388.1\|2621616_2622990_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP047852.1\|WP_001792784.1\|2614449_2614608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000160306.1\|2624623_2625334_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP047852.1\|WP_001292149.1\|2605215_2605650_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
NZ_CP047852.1\|WP_001802298.1\|2615287_2615392_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000019745.1\|2617190_2618171_-\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP047852.1\|WP_000070866.1\|2624059_2624503_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP047852.1\|WP_000003759.1\|2618172_2618493_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP047852.1\|WP_000648738.1\|2604109_2605216_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP047852.1\|WP_000334465.1\|2610047_2611853_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP047852.1\|WP_000495671.1\|2615833_2616925_-\|lytic-regulatory-protein	unknown	unknown	unknown
NZ_CP047852.1\|WP_000083807.1\|2607828_2609367_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123

Protein	Function_ID	Function_description	E-value
NZ_CP047852.1\|WP_000070866.1\|2624059_2624503_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_CP047852.1\|WP_001123303.1\|2623446_2623860_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NZ_CP047852.1\|WP_000123388.1\|2621616_2622990_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.19091e-06
NZ_CP047852.1\|WP_001024093.1\|2618644_2619310_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.69858e-48
NZ_CP047852.1\|WP_000927342.1\|2605661_2607794_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.55541e-67
NZ_CP047852.1\|WP_000908175.1\|2612084_2612867_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.10326e-104
NZ_CP047852.1\|WP_000334465.1\|2610047_2611853_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP047852.1\|WP_000160306.1\|2624623_2625334_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.42383e-156
NZ_CP047852.1\|WP_001292149.1\|2605215_2605650_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP047852.1\|WP_000521495.1\|2594748_2596104_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP047852.1\|WP_000019745.1\|2617190_2618171_-\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	9.21919e-109
NZ_CP047852.1\|WP_000003759.1\|2618172_2618493_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP047852.1\|WP_000648738.1\|2604109_2605216_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP047852.1\|WP_000370926.1\|2612934_2613792_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.08235e-59
NZ_CP047852.1\|WP_001127960.1\|2619745_2620684_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP047852.1\|WP_000083807.1\|2607828_2609367_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0

>NZ_CP047852.1|WP_001802298.1|2615287_2615392_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP047852.1|WP_001792784.1|2614449_2614608_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_CP047852.1|WP_000370926.1|2612934_2613792_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAE
>NZ_CP047852.1|WP_000908175.1|2612084_2612867_+|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKIPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP047852.1|WP_000334465.1|2610047_2611853_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP047852.1|WP_000083807.1|2607828_2609367_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP047852.1|WP_000927342.1|2605661_2607794_-|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFVVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP047852.1|WP_001292149.1|2605215_2605650_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP047852.1|WP_000648738.1|2604109_2605216_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINTLAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP047852.1|WP_000521495.1|2594748_2596104_+|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_CP047852.1|WP_000495671.1|2615833_2616925_-|lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP047852.1|WP_000019745.1|2617190_2618171_-|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHVHVH
>NZ_CP047852.1|WP_000003759.1|2618172_2618493_-|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP047852.1|WP_001024093.1|2618644_2619310_+|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDKDIKDALTQFEIEKD
>NZ_CP047852.1|WP_001127960.1|2619745_2620684_+|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP047852.1|WP_000808817.1|2620714_2620945_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP047852.1|WP_000123388.1|2621616_2622990_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIINVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQPYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP047852.1|WP_001123303.1|2623446_2623860_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP047852.1|WP_000070866.1|2624059_2624503_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP047852.1|WP_000160306.1|2624623_2625334_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKTKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	78316-78347	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	597848-597879	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	686027-686058	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1159134-1159165	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1201239-1201270	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1206673-1206704	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1764912-1764943	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1873164-1873195	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1898296-1898327	0	1.0
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	2458879-2458910	0	1.0
NZ_CP047852_10	10.1\|1873117\|33\|NZ_CP047852\|CRISPRCasFinder	1873117-1873149	33	NZ_CP047852.1	685922-685954	0	1.0
NZ_CP047852_10	10.1\|1873117\|33\|NZ_CP047852\|CRISPRCasFinder	1873117-1873149	33	NZ_CP047852.1	964439-964471	0	1.0
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	685922-685952	0	1.0
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	1898250-1898280	0	1.0
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	78247-78277	0	1.0
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	964441-964471	0	1.0
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	1201400-1201430	0	1.0
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1159144-1159177	1	0.971
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1206683-1206716	1	0.971
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1764922-1764955	1	0.971
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1749632-1749665	1	0.971
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1873152-1873185	1	0.971
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	239216-239247	1	0.969
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1089309-1089340	1	0.969
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1193976-1194007	1	0.969
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	1749644-1749675	1	0.969
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	2297267-2297298	1	0.969
NZ_CP047852_8	8.1\|1159178\|34\|NZ_CP047852\|CRISPRCasFinder	1159178-1159211	34	NZ_CP047852.1	685922-685955	1	0.971
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	685910-685940	1	0.968
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	1898238-1898268	1	0.968
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	2458764-2458794	1	0.968
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	964453-964483	1	0.968
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	889785-889815	1	0.968
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	1158811-1158841	1	0.968
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	1158867-1158897	1	0.968
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	1194035-1194065	1	0.968
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	2458776-2458806	1	0.968
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	78326-78359	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	597858-597891	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	964403-964436	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1193986-1194019	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1201249-1201282	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	239204-239237	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	686015-686048	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	1898284-1898317	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	2297255-2297288	2	0.941
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP047852.1	2458867-2458900	2	0.941
NZ_CP047852_7	7.1\|990822\|32\|NZ_CP047852\|CRISPRCasFinder	990822-990853	32	NZ_CP047852.1	889955-889986	2	0.938
NZ_CP047852_10	10.1\|1873117\|33\|NZ_CP047852\|CRISPRCasFinder	1873117-1873149	33	NZ_CP047852.1	990868-990900	2	0.939
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	78259-78289	2	0.935
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	415067-415097	2	0.935
NZ_CP047852_11	11.1\|2047905\|31\|NZ_CP047852\|CRISPRCasFinder	2047905-2047935	31	NZ_CP047852.1	1201182-1201212	2	0.935
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	805915-805945	2	0.935
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	1110136-1110166	2	0.935
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	1194091-1194121	2	0.935
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	2493139-2493169	2	0.935
NZ_CP047852_11	11.2\|2047961\|31\|NZ_CP047852\|CRISPRCasFinder	2047961-2047991	31	NZ_CP047852.1	2493195-2493225	2	0.935
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	415055-415085	2	0.935
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	990870-990900	2	0.935
NZ_CP047852_13	13.1\|2297220\|31\|NZ_CP047852\|CRISPRCasFinder	2297220-2297250	31	NZ_CP047852.1	1201170-1201200	2	0.935

1. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 78316-78347, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

2. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 597848-597879, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

3. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 686027-686058, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

4. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1159134-1159165, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

5. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1201239-1201270, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

6. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1206673-1206704, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

7. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1764912-1764943, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

8. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1873164-1873195, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

9. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1898296-1898327, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

10. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 2458879-2458910, mismatch: 0, identity: 1.0

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
********************************

11. spacer 10.1|1873117|33|NZ_CP047852|CRISPRCasFinder matches to position: 685922-685954, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
*********************************

12. spacer 10.1|1873117|33|NZ_CP047852|CRISPRCasFinder matches to position: 964439-964471, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
*********************************

13. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 685922-685952, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

14. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 1898250-1898280, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

15. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 78247-78277, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

16. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 964441-964471, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

17. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 1201400-1201430, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctttgttggggcc	Protospacer
*******************************

18. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1159144-1159177, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

19. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1206683-1206716, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

20. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1764922-1764955, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

21. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1749632-1749665, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

22. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1873152-1873185, mismatch: 1, identity: 0.971

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcaagttgggg	Protospacer
*******************.**************

23. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 239216-239247, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacagacaa	Protospacer
****************************.***

24. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1089309-1089340, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttctaaaagaaattctacaggcaa	Protospacer
*********** ********************

25. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1193976-1194007, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaatgaaattctacaggcaa	Protospacer
*************** ****************

26. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 1749644-1749675, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
caaagaatttcgaaaagaaattctacaggcaa	Protospacer
**.*****************************

27. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 2297267-2297298, mismatch: 1, identity: 0.969

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcgaaaagaaattctacagacaa	Protospacer
****************************.***

28. spacer 8.1|1159178|34|NZ_CP047852|CRISPRCasFinder matches to position: 685922-685955, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

29. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 685910-685940, mismatch: 1, identity: 0.968

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattcccaatttctacagacaa	Protospacer
****************.**************

30. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 1898238-1898268, mismatch: 1, identity: 0.968

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattcccaatttctacagacaa	Protospacer
****************.**************

31. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 2458764-2458794, mismatch: 1, identity: 0.968

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattcccaatttctacagacaa	Protospacer
****************.**************

32. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 964453-964483, mismatch: 1, identity: 0.968

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattcccaatttctacagacaa	Protospacer
****************.**************

33. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 889785-889815, mismatch: 1, identity: 0.968

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
********.**********************

34. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 1158811-1158841, mismatch: 1, identity: 0.968

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
********.**********************

35. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 1158867-1158897, mismatch: 1, identity: 0.968

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
********.**********************

36. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 1194035-1194065, mismatch: 1, identity: 0.968

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
********.**********************

37. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 2458776-2458806, mismatch: 1, identity: 0.968

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attgggaatccaatttctctatgttggggcc	Protospacer
******************** **********

38. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 78326-78359, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

39. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 597858-597891, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

40. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 964403-964436, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

41. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1193986-1194019, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaatgaaattctacaggcaatgcaagttgggg	Protospacer
***** *************.**************

42. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1201249-1201282, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

43. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 239204-239237, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacagacaatgcaagttgggg	Protospacer
******************..**************

44. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 686015-686048, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

45. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 1898284-1898317, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

46. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 2297255-2297288, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacagacaatgcaagttgggg	Protospacer
******************..**************

47. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to position: 2458867-2458900, mismatch: 2, identity: 0.941

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
cgaaaagaaattctacaggcaatgcgagttgggg	Protospacer
*******************.*****.********

48. spacer 7.1|990822|32|NZ_CP047852|CRISPRCasFinder matches to position: 889955-889986, mismatch: 2, identity: 0.938

cagagaatttcgaaaagaaattctacaggcaa	CRISPR spacer
cagagaatttcaaaaagaaattctacagacaa	Protospacer
***********.****************.***

49. spacer 10.1|1873117|33|NZ_CP047852|CRISPRCasFinder matches to position: 990868-990900, mismatch: 2, identity: 0.939

attgggaatccaatttctctttgttggggccca	CRISPR spacer
attggaaatccaattcctctttgttggggccca	Protospacer
*****.*********.*****************

50. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 78259-78289, mismatch: 2, identity: 0.935

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattcccaatttcaacagacaa	Protospacer
****************.***** ********

51. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 415067-415097, mismatch: 2, identity: 0.935

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggattgccaatttctacagacaa	Protospacer
************* **.**************

52. spacer 11.1|2047905|31|NZ_CP047852|CRISPRCasFinder matches to position: 1201182-1201212, mismatch: 2, identity: 0.935

gagaaattggattcccgatttctacagacaa	CRISPR spacer
gagaaattggatttccaatttctacagacaa	Protospacer
*************.**.**************

53. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 805915-805945, mismatch: 2, identity: 0.935

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctgacggaaagtcagcttacaataatg	Protospacer
*******..**********************

54. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 1110136-1110166, mismatch: 2, identity: 0.935

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaggctggtggaaagtcagcttacaatagtg	Protospacer
**.*************************.**

55. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 1194091-1194121, mismatch: 2, identity: 0.935

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaagctgacggaaagtcagcttacaataatg	Protospacer
*******..**********************

56. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 2493139-2493169, mismatch: 2, identity: 0.935

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaggctggcggaaagtcagcttacaataatg	Protospacer
**.*****.**********************

57. spacer 11.2|2047961|31|NZ_CP047852|CRISPRCasFinder matches to position: 2493195-2493225, mismatch: 2, identity: 0.935

gaagctggtggaaagtcagcttacaataatg	CRISPR spacer
gaggctggcggaaagtcagcttacaataatg	Protospacer
**.*****.**********************

58. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 415055-415085, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggcaatccaatttctctatgttggggcc	Protospacer
***** ************** **********

59. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 990870-990900, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggaaatccaattcctctttgttggggcc	Protospacer
*****.*********.***************

60. spacer 13.1|2297220|31|NZ_CP047852|CRISPRCasFinder matches to position: 1201170-1201200, mismatch: 2, identity: 0.935

attgggaatccaatttctctttgttggggcc	CRISPR spacer
attggaaatccaatttctctgtgttggggcc	Protospacer
*****.************** **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047852_2	2.1\|296533\|30\|NZ_CP047852\|CRISPRCasFinder	296533-296562	30	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	345478-345507	5	0.833
NZ_CP047852_1	1.1\|239157\|29\|NZ_CP047852\|CRISPRCasFinder	239157-239185	29	MF459647	Erwinia phage vB_EamM_Joad, complete genome	84795-84823	6	0.793
NZ_CP047852_1	1.1\|239157\|29\|NZ_CP047852\|CRISPRCasFinder	239157-239185	29	MF459646	Erwinia phage vB_EamM_RisingSun, complete genome	84869-84897	6	0.793
NZ_CP047852_3	3.1\|382563\|34\|NZ_CP047852\|CRISPRCasFinder	382563-382596	34	LC371242	Escherichia phage EcS1 DNA, complete sequence	15447-15480	8	0.765
NZ_CP047852_14	14.1\|2603428\|34\|NZ_CP047852\|CRISPRCasFinder	2603428-2603461	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
NZ_CP047852_14	14.1\|2603428\|34\|NZ_CP047852\|CRISPRCasFinder	2603428-2603461	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
NZ_CP047852_5	5.1\|889841\|30\|NZ_CP047852\|CRISPRCasFinder	889841-889870	30	KT588075	Acinetobacter phage Ab105-2phi, complete genome	13350-13379	9	0.7
NZ_CP047852_5	5.1\|889841\|30\|NZ_CP047852\|CRISPRCasFinder	889841-889870	30	MT349887	Acinetobacter phage 5W, complete genome	37720-37749	9	0.7
NZ_CP047852_4	4.1\|415018\|34\|NZ_CP047852\|CRISPRCasFinder	415018-415051	34	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	270864-270897	10	0.706

1. spacer 2.1|296533|30|NZ_CP047852|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 5, identity: 0.833

attgaggatccaatttctctgtgttgggcc---	CRISPR spacer
attgagcatccaatttctccg---tgggccccg	Protospacer
****** ************.*   ******

2. spacer 1.1|239157|29|NZ_CP047852|CRISPRCasFinder matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 6, identity: 0.793

cattattgaaagctgactattggccagct	CRISPR spacer
gattattggaagctgattattggccggtg	Protospacer
 *******.*******.********.*.

3. spacer 1.1|239157|29|NZ_CP047852|CRISPRCasFinder matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 6, identity: 0.793

cattattgaaagctgactattggccagct	CRISPR spacer
gattattggaagctgattattggccggtg	Protospacer
 *******.*******.********.*.

4. spacer 3.1|382563|34|NZ_CP047852|CRISPRCasFinder matches to LC371242 (Escherichia phage EcS1 DNA, complete sequence) position: , mismatch: 8, identity: 0.765

acggggccccaacatagagaatttcgtaaagaaa	CRISPR spacer
attcgtcgtcaacaaaaagaatttcgtaaagaaa	Protospacer
*.  * * .***** *.*****************

5. spacer 14.1|2603428|34|NZ_CP047852|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

6. spacer 14.1|2603428|34|NZ_CP047852|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

7. spacer 5.1|889841|30|NZ_CP047852|CRISPRCasFinder matches to KT588075 (Acinetobacter phage Ab105-2phi, complete genome) position: , mismatch: 9, identity: 0.7

ttgtctgtagaaattgagaatccaatttca	CRISPR spacer
gaaaaggtagcaattgagaatccaattgga	Protospacer
  .   **** ****************  *

8. spacer 5.1|889841|30|NZ_CP047852|CRISPRCasFinder matches to MT349887 (Acinetobacter phage 5W, complete genome) position: , mismatch: 9, identity: 0.7

ttgtctgtagaaattgagaatccaatttca	CRISPR spacer
gaaaaggtagcaattgagaatccaattgga	Protospacer
  .   **** ****************  *

9. spacer 4.1|415018|34|NZ_CP047852|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 10, identity: 0.706

cgaaaagaaattctacaggtaatgcaagttgggg	CRISPR spacer
aaaaaagaaatgctacaggtaatgcagcacttag	Protospacer
 .********* **************.  .  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 24769

Staphylococcus_phage(100.0%)

protease,portal,tail,holin,head,capsid,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160199850.1\|0_1695_+\|terminase	terminase	D2JLE4	Staphylococcus_phage	0.0e+00	99.8
WP_000644965.1\|1669_1909_+	membrane protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
WP_011447040.1\|1974_3165_+\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	1.8e-224	100.0
WP_000032525.1\|3157_3742_+\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
WP_000849950.1\|3829_5077_+\|capsid	phage major capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
WP_001252099.1\|5112_5271_+	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
WP_001177486.1\|5279_5612_+\|head,tail	phage head-tail adapter protein	A0A1W6JPZ6	Staphylococcus_phage	2.1e-58	100.0
WP_000975314.1\|5598_5934_+\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
WP_000501244.1\|5933_6311_+	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
WP_000611452.1\|6307_6688_+	hypothetical protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
WP_000570652.1\|6688_7642_+\|tail	phage tail protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
WP_000442601.1\|7706_8153_+	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
WP_000570353.1\|8212_8335_+	hypothetical protein	D2JLF6	Staphylococcus_phage	6.9e-15	100.0
WP_001133528.1\|8390_13043_+\|tail	phage tail tape measure protein	Q8SDK4	Staphylococcus_phage	0.0e+00	100.0
WP_029549971.1\|13042_14533_+\|tail	phage tail protein	D2JLF8	Staphylococcus_phage	8.2e-299	99.8
WP_160199939.1\|14551_18334_+	hypothetical protein	A0A1P8L6B8	Staphylococcus_phage	0.0e+00	99.8
WP_001153681.1\|18323_18476_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_001040261.1\|18522_18810_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_000539688.1\|18867_19164_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_011447039.1\|19313_19490_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_001791821.1\|19542_19650_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|19701_19956_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|19967_20723_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000920037.1\|20913_21405_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	3.6e-86	100.0
WP_020444758.1\|21931_22390_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
WP_000727643.1\|22484_22934_-	chemotaxis-inhibiting protein CHIPS	A7TWR9	Staphylococcus_phage	1.5e-78	100.0
WP_000702262.1\|23615_23966_+	complement inhibitor SCIN-A	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|24018_24279_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669789.1\|24589_24769_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0

DBSCAN-SWA_2

124799 : 234239

105

Staphylococcus_phage(93.85%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001789049.1\|124799_125942_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_000181394.1\|125946_126417_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_001251224.1\|126575_127175_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_000031108.1\|127199_127352_+	hypothetical protein	NA	NA	NA	NA
WP_000901023.1\|128182_128578_+	hypothetical protein	NA	NA	NA	NA
WP_000116229.1\|128773_130159_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000669376.1\|130619_131441_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000437967.1\|131603_132716_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_001045133.1\|132737_133361_+	response regulator transcription factor	NA	NA	NA	NA
WP_000375864.1\|133716_134181_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000992524.1\|134359_135484_+	DUF445 domain-containing protein	NA	NA	NA	NA
WP_000290301.1\|135552_135897_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
WP_001802255.1\|136389_136488_+	hypothetical protein	NA	NA	NA	NA
WP_000238227.1\|136778_137975_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_000584629.1\|137964_140901_+	AAA family ATPase	NA	NA	NA	NA
WP_001244175.1\|140897_141839_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_000782121.1\|141959_142922_-	foldase	NA	NA	NA	NA
WP_000477959.1\|143126_143684_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_000648118.1\|144416_144782_-	YtxH domain-containing protein	NA	NA	NA	NA
WP_000004981.1\|144923_145346_-	HIT family protein	NA	NA	NA	NA
WP_000216873.1\|145479_146220_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-24	29.8
WP_000551840.1\|146212_147436_+	ABC transporter permease	NA	NA	NA	NA
WP_000737978.1\|147559_148063_-	signal transduction protein TraP	NA	NA	NA	NA
WP_001790154.1\|148225_148336_+	hypothetical protein	NA	NA	NA	NA
WP_000233526.1\|148325_149363_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000162881.1\|149420_150344_+	ferrochelatase	NA	NA	NA	NA
WP_000167545.1\|150367_151768_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_000132890.1\|152088_152643_+	serine hydrolase family protein	NA	NA	NA	NA
WP_129409671.1\|153993_154776_+	staphylococcal enterotoxin type O	A0A1X9H080	Staphylococcus_phage	1.4e-31	36.7
WP_000821658.1\|155056_155776_+	staphylococcal enterotoxin type M	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
WP_000713847.1\|155810_156539_+	staphylococcal enterotoxin type I	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
WP_000764689.1\|156692_157463_+	staphylococcal enterotoxin type C1/U	A0A097PAT7	Streptococcus_pyogenes_phage	1.4e-44	43.2
WP_001236364.1\|157501_158257_+	staphylococcal enterotoxin type N	A0A075M4C7	Staphylococcus_phage	1.0e-39	41.0
WP_160199854.1\|158539_159316_+	staphylococcal enterotoxin type G	NA	NA	NA	NA
WP_000848315.1\|159867_160644_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000617704.1\|160664_160901_-	hypothetical protein	NA	NA	NA	NA
WP_001253432.1\|160978_161473_-	hypothetical protein	NA	NA	NA	NA
WP_001792814.1\|162000_162129_-\|transposase	IS3 family transposase	A0A2H4PQU1	Staphylococcus_phage	6.6e-08	66.7
WP_000209099.1\|162306_163095_-	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	1.3e-138	95.0
WP_000473596.1\|164456_165392_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
WP_000782463.1\|165393_166377_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
WP_000416758.1\|166799_166943_+	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	2.0e-13	78.7
WP_000416756.1\|167678_167822_+	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
WP_160199855.1\|167886_170880_+	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.1
WP_000566594.1\|170872_172117_+	lanthionine synthetase C family protein	A0A2H4PQH9	Staphylococcus_phage	1.5e-237	99.8
WP_000504439.1\|172132_172651_+	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
WP_160199856.1\|172660_174034_+	S8 family serine peptidase	A0A2H4PQH1	Staphylococcus_phage	8.4e-258	99.8
WP_001096791.1\|174056_174749_+	lantibiotic protection ABC transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
WP_000581552.1\|174745_175507_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
WP_000586140.1\|175503_176202_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
WP_160199857.1\|176675_177242_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.8e-98	98.9
WP_025174267.1\|178204_178912_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	3.9e-126	97.4
WP_001039443.1\|179036_179759_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	1.9e-131	99.6
WP_001038869.1\|179816_180536_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	6.0e-130	98.7
WP_001038694.1\|180656_181376_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	1.2e-127	97.9
WP_102957303.1\|181324_181432_-	hypothetical protein	NA	NA	NA	NA
WP_001038759.1\|181533_182250_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
WP_001038689.1\|182399_183119_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	3.2e-131	99.6
WP_000028583.1\|183484_185041_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.0e-288	98.1
WP_047230715.1\|185033_186263_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.8e-133	64.2
WP_001792025.1\|187338_187440_-	hypothetical protein	NA	NA	NA	NA
WP_001801861.1\|187562_187658_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_000414215.1\|189013_189586_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_000627537.1\|189686_190028_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
WP_000669026.1\|190068_190695_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.5e-94	96.2
WP_000070641.1\|190769_191765_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.9e-72	95.2
WP_072470537.1\|191845_192496_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.8e-32	70.7
WP_072470673.1\|192798_193254_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
WP_000348370.1\|193412_194891_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.9e-282	97.2
WP_000778534.1\|194895_195897_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	7.7e-184	96.7
WP_000718107.1\|195893_196151_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672014.1\|196216_196690_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
WP_072470674.1\|196694_197441_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	8.3e-143	99.2
WP_000109906.1\|197818_199411_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_160199858.1\|199781_200975_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.8e-217	99.5
WP_000366155.1\|201099_202008_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.7e-137	99.0
WP_000453312.1\|202219_203053_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.1e-158	99.6
WP_000623479.1\|203436_203790_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	8.2e-16	92.3
WP_001200540.1\|203786_204152_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.8e-59	99.2
WP_000091442.1\|204407_204710_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|204969_205683_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168904.1\|206122_206758_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001030463.1\|207053_207497_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.7e-58	100.0
WP_001153742.1\|207483_207927_-	competence protein ComK	NA	NA	NA	NA
WP_000671057.1\|208039_208510_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
WP_000384171.1\|208708_208933_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|209208_210063_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000163235.1\|210357_210753_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
WP_000989120.1\|210770_212063_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	1.9e-227	99.3
WP_000221185.1\|212062_212377_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	4.4e-53	99.0
WP_001261669.1\|212900_214403_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_025174259.1\|214895_215927_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
WP_000493888.1\|215933_216566_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
WP_001159033.1\|216576_217758_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.1e-227	99.7
WP_001008551.1\|217770_218235_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001196354.1\|218356_219358_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001790712.1\|219469_219589_+	hypothetical protein	NA	NA	NA	NA
WP_000266096.1\|219591_220419_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000757543.1\|220989_221391_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000764419.1\|221510_222074_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000526539.1\|222070_223024_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_001025061.1\|223133_224315_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_001108734.1\|224605_227020_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_000836465.1\|227041_227353_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001050510.1\|227678_234239_+	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.3e-303	96.0

DBSCAN-SWA_3

358404 : 367447

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005768.1\|358404_359409_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_001019178.1\|359410_360436_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112045.1\|360458_361598_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001160682.1\|361616_361877_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_000749795.1\|362151_364431_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_031918693.1\|364633_366907_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
WP_000364545.1\|366928_367447_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.2e-28	45.8

DBSCAN-SWA_4

435167 : 443479

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217262.1\|435167_436967_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-53	36.3
WP_001283055.1\|437190_438297_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624584.1\|438427_439105_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683930.1\|439107_440208_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_001062180.1\|440321_441668_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
WP_000924214.1\|441677_442568_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001213908.1\|442693_443479_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_5

980953 : 989426

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000238664.1\|980953_981520_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
WP_000030821.1\|981522_982551_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.9e-61	41.4
WP_000483713.1\|982543_984028_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000032746.1\|984006_986196_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-141	39.8
WP_000666799.1\|986188_986860_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000848350.1\|986861_987125_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000174053.1\|987124_987829_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_001010406.1\|987832_988957_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000861574.1\|988943_989426_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_6

1009400 : 1042708

Enterococcus_phage(16.67%)

bacteriocin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001089097.1\|1009400_1010582_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
WP_000284457.1\|1010619_1010949_+	staphostatin B	NA	NA	NA	NA
WP_000184947.1\|1011187_1012009_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_000150199.1\|1012001_1012805_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
WP_160199883.1\|1012791_1014465_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_072353880.1\|1014451_1015663_-	isochorismate synthase	NA	NA	NA	NA
WP_001791731.1\|1015739_1015844_-	hypothetical protein	NA	NA	NA	NA
WP_000070966.1\|1015994_1016933_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000620949.1\|1016984_1017536_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001788574.1\|1017625_1017916_+	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
WP_072353879.1\|1017979_1018111_+	hypothetical protein	NA	NA	NA	NA
WP_001081352.1\|1018156_1019116_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000766009.1\|1019603_1019960_+	DoxX family protein	NA	NA	NA	NA
WP_001792054.1\|1020048_1020186_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
WP_001795266.1\|1020326_1020617_+	hypothetical protein	NA	NA	NA	NA
WP_000571167.1\|1020704_1021346_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
WP_000668622.1\|1021342_1021663_-	YxeA family protein	NA	NA	NA	NA
WP_160199884.1\|1021665_1023630_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_072470685.1\|1023673_1023946_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_001790623.1\|1023955_1024057_-	hypothetical protein	NA	NA	NA	NA
WP_001033867.1\|1024972_1025575_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000214898.1\|1025589_1025766_-	YkvS family protein	NA	NA	NA	NA
WP_160199885.1\|1025964_1026951_+	lipoate--protein ligase	NA	NA	NA	NA
WP_000876826.1\|1027031_1027250_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_000287265.1\|1027459_1028029_+	competence protein ComK	NA	NA	NA	NA
WP_000414178.1\|1028515_1030027_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000021865.1\|1030165_1031524_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_072470629.1\|1031540_1033865_-\|protease	serine protease	W5SAB9	Pithovirus	2.1e-11	27.4
WP_000928411.1\|1034083_1034887_-	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_001049957.1\|1035188_1036751_-	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	2.2e-36	28.2
WP_001795833.1\|1036750_1037011_-	hypothetical protein	NA	NA	NA	NA
WP_000340119.1\|1036991_1038476_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_000258650.1\|1038908_1040084_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_001794241.1\|1040043_1041252_+	MFS transporter	NA	NA	NA	NA
WP_000600390.1\|1041364_1041874_-	hypothetical protein	NA	NA	NA	NA
WP_000251964.1\|1042531_1042708_-\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	4.5e-07	50.9

DBSCAN-SWA_7

1235107 : 1249395

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616862.1\|1235107_1235869_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	3.8e-18	31.6
WP_001245574.1\|1235865_1236822_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000876318.1\|1236808_1237780_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_000499195.1\|1237818_1237974_-	hypothetical protein	NA	NA	NA	NA
WP_000562501.1\|1238154_1239126_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	5.5e-171	91.3
WP_000855505.1\|1239243_1241349_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692521.1\|1241311_1241710_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_001068504.1\|1242510_1243377_+	DMT family transporter	NA	NA	NA	NA
WP_000930014.1\|1243396_1243897_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_000193757.1\|1244237_1245743_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_031918684.1\|1245822_1245924_-	hypothetical protein	NA	NA	NA	NA
WP_000429006.1\|1246014_1246932_+	lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
WP_000197271.1\|1247499_1248042_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000663030.1\|1248336_1249395_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_8

1261366 : 1269185

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160199892.1\|1261366_1262518_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.7e-23	36.1
WP_000604514.1\|1262501_1263095_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_000446724.1\|1263444_1264113_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000941336.1\|1264114_1264534_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062972.1\|1264537_1265251_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637687.1\|1265349_1265934_+	hypothetical protein	NA	NA	NA	NA
WP_001093556.1\|1266213_1266654_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001037807.1\|1266995_1267469_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|1267443_1268130_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244415.1\|1268129_1269185_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_9

1630487 : 1649224

Staphylococcus_phage(86.36%)

coat,integrase,terminase

attL 1632279:1632293|attR 1647035:1647049

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001792762.1\|1630487_1630628_+	hypothetical protein	Q4ZE80	Staphylococcus_phage	5.9e-10	66.7
WP_001822249.1\|1631084_1632023_+	Abi family protein	NA	NA	NA	NA
1632279:1632293	attL	NA	NA	NA	NA
WP_000877056.1\|1632568_1632826_-	hypothetical protein	NA	NA	NA	NA
WP_001035617.1\|1633357_1633915_+	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	9.2e-70	74.9
WP_000278086.1\|1633992_1634793_-	staphylococcal enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	1.9e-52	46.5
WP_160199905.1\|1635100_1635670_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.0e-100	97.4
WP_000358778.1\|1635666_1636008_-	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
WP_160199906.1\|1636010_1636538_-\|coat	spore coat protein	A0A1W6JQH7	Staphylococcus_phage	6.6e-86	95.4
WP_000214169.1\|1636590_1637244_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	9.0e-117	100.0
WP_001190614.1\|1637274_1637616_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
WP_001019288.1\|1638151_1638793_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	4.7e-110	93.0
WP_001804819.1\|1638794_1639058_-	hypothetical protein	NA	NA	NA	NA
WP_001039165.1\|1639059_1639422_-	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	4.6e-62	95.8
WP_031928070.1\|1639700_1641170_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	1.6e-278	95.9
WP_001002727.1\|1641186_1642056_-	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	2.8e-158	94.5
WP_160199907.1\|1642121_1642442_-	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	3.6e-18	55.7
WP_000695070.1\|1642442_1642826_-	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	2.0e-63	97.6
WP_001231389.1\|1642827_1643031_-	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	1.1e-28	94.0
WP_072470692.1\|1642997_1643171_-	pathogenicity island protein	NA	NA	NA	NA
WP_001138301.1\|1643182_1643455_-	winged helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	2.1e-43	93.3
WP_000551774.1\|1643455_1643668_-	helix-turn-helix transcriptional regulator	Q4ZE78	Staphylococcus_phage	3.0e-21	71.4
WP_001033058.1\|1643706_1643907_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_050436923.1\|1644013_1644937_+	helix-turn-helix transcriptional regulator	Q4ZC20	Staphylococcus_virus	2.2e-07	43.1
WP_000270125.1\|1644962_1646180_+\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	2.1e-220	98.0
WP_000357932.1\|1646662_1647493_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	3.4e-113	72.6
1647035:1647049	attR	NA	NA	NA	NA
WP_000897044.1\|1647674_1647917_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_000934799.1\|1647968_1648472_-	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
WP_001261460.1\|1648492_1648789_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_001052483.1\|1649032_1649224_+	hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0

DBSCAN-SWA_10

2747333 : 2768423

Staphylococcus_phage(100.0%)

integrase,terminase

attL 2735913:2735929|attR 2759355:2759371

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2735913:2735929	attL	NA	NA	NA	NA
WP_000791404.1\|2747333_2748386_+	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.5e-36	34.6
WP_000595401.1\|2748407_2749424_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
WP_000857176.1\|2750911_2751949_-\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
WP_000191459.1\|2752056_2752671_+	hypothetical protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
WP_001013104.1\|2752667_2752814_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
WP_000705243.1\|2752849_2753032_-	hypothetical protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
WP_001208482.1\|2753231_2754002_-	helix-turn-helix domain-containing protein	A0A1P8L6G7	Staphylococcus_phage	6.2e-141	100.0
WP_000338186.1\|2754160_2754385_+	DUF739 family protein	A7TW90	Staphylococcus_phage	4.5e-36	100.0
WP_000435341.1\|2754402_2754663_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
WP_000351243.1\|2754686_2755226_-	hypothetical protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
WP_001148337.1\|2755282_2756032_+	antirepressor	Q8SDM9	Staphylococcus_phage	4.4e-136	99.6
WP_001148855.1\|2756047_2756245_+	hypothetical protein	Q8SDM8	Staphylococcus_phage	7.0e-33	100.0
WP_000939496.1\|2756275_2756416_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_000275058.1\|2756430_2757063_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_001120197.1\|2757121_2757442_+	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
WP_000066020.1\|2757438_2757600_+	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
WP_000291488.1\|2757692_2757953_+	DUF1108 family protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
WP_000815404.1\|2757962_2758184_+	DUF2483 domain-containing protein	A0A1W6JQ25	Staphylococcus_phage	9.3e-34	100.0
WP_000137070.1\|2758176_2758956_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	3.3e-142	100.0
WP_000704705.1\|2758986_2759538_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
2759355:2759371	attR	NA	NA	NA	NA
WP_001199416.1\|2759550_2760222_+	hypothetical protein	Q8SDM2	Staphylococcus_phage	4.4e-127	100.0
WP_000414755.1\|2760360_2760642_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
WP_000190253.1\|2760707_2761478_+	hypothetical protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
WP_000803062.1\|2761487_2762267_+	ATP-binding protein	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
WP_000256589.1\|2762260_2762419_+	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
WP_001123674.1\|2762431_2762653_+	DUF3269 family protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
WP_000049804.1\|2762663_2763068_+	DUF1064 domain-containing protein	A0A1W6JPX0	Staphylococcus_phage	3.6e-68	100.0
WP_001187234.1\|2763072_2763258_+	DUF3113 family protein	A0A1W6JPY2	Staphylococcus_phage	8.3e-28	100.0
WP_001029545.1\|2763258_2763630_+	hypothetical protein	A0A1W6JPY5	Staphylococcus_phage	7.5e-52	100.0
WP_001126839.1\|2763630_2763879_+	hypothetical protein	A0A1W6JPX8	Staphylococcus_phage	2.5e-43	100.0
WP_000982695.1\|2763942_2764290_+	hypothetical protein	A0A1W6JPZ1	Staphylococcus_phage	5.9e-59	100.0
WP_000219085.1\|2764286_2764676_+	acetyltransferase	A0A1W6JPV7	Staphylococcus_phage	3.5e-68	100.0
WP_001065078.1\|2764668_2764923_+	DUF1024 family protein	A0A1W6JQ06	Staphylococcus_phage	1.9e-38	100.0
WP_001795925.1\|2764885_2765080_+	hypothetical protein	M1SVE4	Staphylococcus_phage	5.9e-24	95.1
WP_001066448.1\|2765072_2765609_+	hypothetical protein	A0A1W6JQ21	Staphylococcus_phage	9.4e-96	100.0
WP_001209216.1\|2765645_2765819_+	hypothetical protein	A0A1W6JQ45	Staphylococcus_phage	4.7e-25	100.0
WP_000195759.1\|2765835_2766042_+	DUF1381 domain-containing protein	A0A1W6JPY0	Staphylococcus_phage	1.9e-20	100.0
WP_000595265.1\|2766038_2766188_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_001794311.1\|2766187_2766388_+	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
WP_000282749.1\|2766410_2766899_+	hypothetical protein	D2JLE0	Staphylococcus_phage	3.8e-72	100.0
WP_000406194.1\|2767013_2767466_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A1W6JQ01	Staphylococcus_phage	3.6e-80	100.0
WP_000817289.1\|2767481_2767826_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
WP_000919026.1\|2767955_2768423_+\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047852

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection