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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047802 Staphylococcus aureus strain UP_1442 chromosome, complete genome 12 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 10 3 8 2

Results visualization

1. NZ_CP047802
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_1 81119-81220 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_2 429222-429304 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_3 471689-471767 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_4 477144-477413 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_5 520428-520509 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_6 1322705-1322789 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_7 1357135-1357282 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_8 1618962-1619104 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_9 1755351-1755432 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_10 1884277-1884357 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_11 1896598-1896683 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047802_12 2006158-2006238 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047802_3 3.1|471713|31|NZ_CP047802|CRISPRCasFinder 471713-471743 31 NZ_CP047802.1 2796275-2796305 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 428263-428284 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 520501-520522 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1141211-1141232 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1322781-1322802 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1654528-1654549 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 303756-303777 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1052660-1052681 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1337315-1337336 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 2673067-2673088 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 2673125-2673146 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 2796200-2796221 0 1.0
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 2796310-2796331 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 428263-428284 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 520501-520522 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1141211-1141232 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1322781-1322802 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1654528-1654549 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 303756-303777 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1052660-1052681 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1337315-1337336 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 2673067-2673088 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 2673125-2673146 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 2796200-2796221 0 1.0
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 2796310-2796331 0 1.0
NZ_CP047802_9 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder 1755375-1755408 34 NZ_CP047802.1 471688-471721 0 1.0
NZ_CP047802_9 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder 1755375-1755408 34 NZ_CP047802.1 841014-841047 0 1.0
NZ_CP047802_3 3.1|471713|31|NZ_CP047802|CRISPRCasFinder 471713-471743 31 NZ_CP047802.1 2796220-2796250 1 0.968
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 634783-634804 1 0.955
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1357042-1357063 1 0.955
NZ_CP047802_4 4.1|477180|22|NZ_CP047802|CRT 477180-477201 22 NZ_CP047802.1 1357275-1357296 1 0.955
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 429213-429235 1 0.957
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 429491-429513 1 0.957
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 1052776-1052798 1 0.957
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 1654586-1654608 1 0.957
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 1995329-1995351 1 0.957
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 634783-634804 1 0.955
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1357042-1357063 1 0.955
NZ_CP047802_4 4.3|477297|22|NZ_CP047802|CRT 477297-477318 22 NZ_CP047802.1 1357275-1357296 1 0.955
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 429213-429235 1 0.957
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 429491-429513 1 0.957
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 1052776-1052798 1 0.957
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 1654586-1654608 1 0.957
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 1995329-1995351 1 0.957
NZ_CP047802_5 5.1|520452|34|NZ_CP047802|CRISPRCasFinder 520452-520485 34 NZ_CP047802.1 1052756-1052789 1 0.971
NZ_CP047802_6 6.1|1322731|33|NZ_CP047802|CRISPRCasFinder 1322731-1322763 33 NZ_CP047802.1 1052757-1052789 1 0.97
NZ_CP047802_9 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder 1755375-1755408 34 NZ_CP047802.1 1449440-1449473 1 0.971
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 484432-484462 1 0.968
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 484488-484518 1 0.968
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 1141094-1141116 2 0.913
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 NZ_CP047802.1 1755432-1755454 2 0.913
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 1141094-1141116 2 0.913
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 NZ_CP047802.1 1755432-1755454 2 0.913
NZ_CP047802_7 7.2|1357242|22|NZ_CP047802|PILER-CR 1357242-1357263 22 NZ_CP047802.1 1755320-1755341 2 0.909
NZ_CP047802_7 7.2|1357242|22|NZ_CP047802|PILER-CR 1357242-1357263 22 NZ_CP047802.1 1755437-1755458 2 0.909
NZ_CP047802_7 7.2|1357242|22|NZ_CP047802|PILER-CR 1357242-1357263 22 NZ_CP047802.1 841136-841157 2 0.909
NZ_CP047802_9 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder 1755375-1755408 34 NZ_CP047802.1 1057130-1057163 2 0.941
NZ_CP047802_9 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder 1755375-1755408 34 NZ_CP047802.1 2444813-2444846 2 0.941
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 484544-484574 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 520765-520795 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 730682-730712 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1141147-1141177 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1141263-1141293 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1653180-1653210 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1995382-1995412 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 2170967-2170997 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 2574467-2574497 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 42381-42411 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 303811-303841 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 846615-846645 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1052715-1052745 2 0.935
NZ_CP047802_12 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder 2006183-2006213 31 NZ_CP047802.1 1337369-1337399 2 0.935

1. spacer 3.1|471713|31|NZ_CP047802|CRISPRCasFinder matches to position: 2796275-2796305, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 428263-428284, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 520501-520522, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1141211-1141232, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1322781-1322802, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1654528-1654549, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 303756-303777, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1052660-1052681, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1337315-1337336, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 2673067-2673088, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 2673125-2673146, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 2796200-2796221, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 2796310-2796331, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 428263-428284, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 520501-520522, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1141211-1141232, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1322781-1322802, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1654528-1654549, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 303756-303777, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1052660-1052681, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1337315-1337336, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 2673067-2673088, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 2673125-2673146, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

24. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 2796200-2796221, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

25. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 2796310-2796331, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

26. spacer 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder matches to position: 471688-471721, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

27. spacer 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder matches to position: 841014-841047, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

28. spacer 3.1|471713|31|NZ_CP047802|CRISPRCasFinder matches to position: 2796220-2796250, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

29. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 634783-634804, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

30. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1357042-1357063, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

31. spacer 4.1|477180|22|NZ_CP047802|CRT matches to position: 1357275-1357296, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

32. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 429213-429235, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 429491-429513, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 1052776-1052798, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 1654586-1654608, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 1995329-1995351, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 634783-634804, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

38. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1357042-1357063, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

39. spacer 4.3|477297|22|NZ_CP047802|CRT matches to position: 1357275-1357296, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

40. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 429213-429235, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 429491-429513, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 1052776-1052798, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

43. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 1654586-1654608, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

44. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 1995329-1995351, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

45. spacer 5.1|520452|34|NZ_CP047802|CRISPRCasFinder matches to position: 1052756-1052789, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

46. spacer 6.1|1322731|33|NZ_CP047802|CRISPRCasFinder matches to position: 1052757-1052789, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

47. spacer 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder matches to position: 1449440-1449473, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

48. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 484432-484462, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

49. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 484488-484518, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

50. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 1141094-1141116, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

51. spacer 4.2|477238|23|NZ_CP047802|CRT matches to position: 1755432-1755454, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

52. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 1141094-1141116, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

53. spacer 4.4|477355|23|NZ_CP047802|CRT matches to position: 1755432-1755454, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

54. spacer 7.2|1357242|22|NZ_CP047802|PILER-CR matches to position: 1755320-1755341, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

55. spacer 7.2|1357242|22|NZ_CP047802|PILER-CR matches to position: 1755437-1755458, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

56. spacer 7.2|1357242|22|NZ_CP047802|PILER-CR matches to position: 841136-841157, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

57. spacer 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder matches to position: 1057130-1057163, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

58. spacer 9.1|1755375|34|NZ_CP047802|CRISPRCasFinder matches to position: 2444813-2444846, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

59. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 484544-484574, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

60. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 520765-520795, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

61. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 730682-730712, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1141147-1141177, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1141263-1141293, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1653180-1653210, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1995382-1995412, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 2170967-2170997, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

67. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 2574467-2574497, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

68. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 42381-42411, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

69. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 303811-303841, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

70. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 846615-846645, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

71. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1052715-1052745, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

72. spacer 12.1|2006183|31|NZ_CP047802|CRISPRCasFinder matches to position: 1337369-1337399, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP047802_4 4.2|477238|23|NZ_CP047802|CRT 477238-477260 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP047802_4 4.4|477355|23|NZ_CP047802|CRT 477355-477377 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP047802_11 11.1|1896624|34|NZ_CP047802|CRISPRCasFinder 1896624-1896657 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP047802_11 11.1|1896624|34|NZ_CP047802|CRISPRCasFinder 1896624-1896657 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|477238|23|NZ_CP047802|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|477238|23|NZ_CP047802|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|477355|23|NZ_CP047802|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|477355|23|NZ_CP047802|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 11.1|1896624|34|NZ_CP047802|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 11.1|1896624|34|NZ_CP047802|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 19598 19 Staphylococcus_phage(100.0%) terminase,portal,protease,holin,head,tail,capsid NA
DBSCAN-SWA_2 407341 : 415162 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 427133 : 441774 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 528840 : 585720 83 Staphylococcus_phage(74.65%) terminase,portal,plate,transposase,holin,head,integrase,tail,capsid attL 526928:526944|attR 561583:561599
DBSCAN-SWA_5 1372374 : 1381417 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1511560 : 1573769 59 Staphylococcus_phage(95.65%) protease,tRNA NA
DBSCAN-SWA_7 1664526 : 1760315 110 Staphylococcus_phage(72.97%) terminase,tRNA,portal,protease,holin,head,integrase,tail,capsid attL 1663862:1663886|attR 1762601:1762625
DBSCAN-SWA_8 2852137 : 2871739 39 Staphylococcus_phage(82.05%) terminase,integrase attL 2847103:2847118|attR 2861044:2861059
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP047802.1|WP_000681968.1|1703184_1703361_-|hypothetical-protein 1703184_1703361_- 58 aa aa NA NA NA 1664526-1760315 yes
NZ_CP047802.1|WP_000990056.1|1703603_1703702_-|hypothetical-protein 1703603_1703702_- 32 aa aa NA NA NA 1664526-1760315 yes