CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047896	Sphingomonas sp. C33 plasmid pC33, complete sequence	0 crisprs	WYL	0	0	0	0
NZ_CP047895	Sphingomonas sp. C33 chromosome, complete genome	1 crisprs	WYL,csa3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047895_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047895_1

1318808-1318897

Orphan

Consensus_repeat	Method
TGCCGGCGTGCAATGGCCCATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047895_1

>merge|NZ_CP047895|1|1318808-1318897|CRISPRCasFinder
TGCCGGCGTGCAATGGCCCATCGCCGCGTGTTCGGGCGGGCAGGGCGGCGGAGCGGGGGCCTGTGCTGCCGGCGTGCAATGGCCCATGGC

>NZ_CP047895|1|1|1318808-1318897|CRISPRCasFinder
TGCCGGCGTGCAATGGCCCATCGC	CGCGTGTTCGGGCGGGCAGGGCGGCGGAGCGGGGGCCTGTGC
TGCCGGCGTGCAATGGCCCATGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047895.1\|WP_160593869.1\|1314516_1315872_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP047895.1\|WP_160592477.1\|1325077_1325746_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP047895.1\|WP_160592473.1\|1316170_1316851_+\|DUF1013-domain-containing-protein	unknown	unknown	gnl\|CDD\|368812
NZ_CP047895.1\|WP_160592474.1\|1318986_1320792_-\|copper-resistance-system-multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
NZ_CP047895.1\|WP_160593867.1\|1302153_1302558_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP047895.1\|WP_160592471.1\|1307581_1308106_-\|ribosome-maturation-protein-RimP	unknown	unknown	gnl\|CDD\|237773
NZ_CP047895.1\|WP_160592472.1\|1308441_1309590_+\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP047895.1\|WP_160592478.1\|1325816_1326020_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047895.1\|WP_160592483.1\|1330637_1331054_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319945
NZ_CP047895.1\|WP_160592480.1\|1326779_1327214_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047895.1\|WP_160592481.1\|1327338_1328538_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP047895.1\|WP_160593868.1\|1305196_1305937_-\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|236401
NZ_CP047895.1\|WP_160592475.1\|1323916_1324195_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273776
NZ_CP047895.1\|WP_160592482.1\|1330221_1330641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047895.1\|WP_160593870.1\|1316999_1318052_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NZ_CP047895.1\|WP_160592468.1\|1299093_1299972_-\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP047895.1\|WP_160592476.1\|1324191_1324929_-\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|273776
NZ_CP047895.1\|WP_160592470.1\|1305974_1307570_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP047895.1\|WP_160592479.1\|1326023_1326704_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP047895.1\|WP_160592469.1\|1300002_1302066_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
NZ_CP047895.1\|WP_160593869.1\|1314516_1315872_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP047895.1\|WP_160592477.1\|1325077_1325746_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.94293e-19
NZ_CP047895.1\|WP_160592473.1\|1316170_1316851_+\|DUF1013-domain-containing-protein	gnl\|CDD\|368812	pfam06242, DUF1013, Protein of unknown function (DUF1013). Family of uncharacterized proteins found in Proteobacteria.	6.48133e-83
NZ_CP047895.1\|WP_160592474.1\|1318986_1320792_-\|copper-resistance-system-multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP047895.1\|WP_160593867.1\|1302153_1302558_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.483e-40
NZ_CP047895.1\|WP_160592471.1\|1307581_1308106_-\|ribosome-maturation-protein-RimP	gnl\|CDD\|237773	PRK14636, PRK14636, ribosome maturation protein RimP.	1.13879e-89
NZ_CP047895.1\|WP_160592472.1\|1308441_1309590_+\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	1.30422e-162
NZ_CP047895.1\|WP_160592483.1\|1330637_1331054_+\|VOC-family-protein	gnl\|CDD\|319945	cd08357, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) familyprotein, glyoxalase I, and type I ring-cleaving dioxygenases. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.05783e-67
NZ_CP047895.1\|WP_160592481.1\|1327338_1328538_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP047895.1\|WP_160593868.1\|1305196_1305937_-\|DUF448-domain-containing-protein	gnl\|CDD\|236401	PRK09190, PRK09190, RNA-binding protein.	3.85923e-41
NZ_CP047895.1\|WP_160592475.1\|1323916_1324195_-\|hypothetical-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.98261e-07
NZ_CP047895.1\|WP_160593870.1\|1316999_1318052_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	6.43522e-35
NZ_CP047895.1\|WP_160592468.1\|1299093_1299972_-\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	8.83825e-49
NZ_CP047895.1\|WP_160592476.1\|1324191_1324929_-\|biotin/lipoyl-binding-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.52702e-23
NZ_CP047895.1\|WP_160592470.1\|1305974_1307570_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP047895.1\|WP_160592479.1\|1326023_1326704_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.05573e-80
NZ_CP047895.1\|WP_160592469.1\|1300002_1302066_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.72351e-104

>NZ_CP047895.1|WP_160593870.1|1316999_1318052_+|MBL-fold-metallo-hydrolase
MADHHPRRGTARGLDYPFGDRAPAPGEIIDLGQGVSWIRLPLGGPLGHINVWAVEEADGLALIDTGVPTDACKQAWRDVLAGPLGGRPVSRVICTHMHPDHIGLAGWLCTKFGTSLWMTRGEYLTARLLCADARPAPPAEAVATWRGAGWTEAQIAAATARGWGSFARSVHRMPEGFVRVKAGDDLGGGWRAVIGSGHSPEHLCLVDEVRGMMIAGDQVLPRISSIVAISILEPEADPLGEWLASIARLRAELPGDLLVLPAHGAVFTGLHARLDALADGHLRTLDRLHARLVERPLRAVDCFGVMFKRAIDDKLLGMATGETLAHLQHLEQAGRAVREPVDGVWWWRAC
>NZ_CP047895.1|WP_160592473.1|1316170_1316851_+|DUF1013-domain-containing-protein
MAQPLMPHATASWLVENTALTFQQIADFCGLHILEVQAIADDTAGTRLTGRDPVRAHELTMDEIERGQANPDYRLRIQKGPEQVRRTKGPRYTPVSKRQDKPDGIAWIIRNHPEVSDGAISKLIGTTRTTIAAIRDRTHWNIANITPKDPVTLGLCSQRELDAIVAKAAKAAGIEAPTDQRLAGDREALIEQLRAERERAAREAEAAARGELDTADRPAFEDPFRR
>NZ_CP047895.1|WP_160593869.1|1314516_1315872_-|replication-associated-recombination-protein-A
MAGGVGTGGTETGGPLADRLRPRALGDVVGQDHLTGPEGAIGRMVAAGRLASMILWGPPGTGKTSIARLLADAVGLRFAAISAVFSGVADLKKAFAEAREHKRMGQRTLLFVDEIHRFNRAQQDGFLPFVEDGTVILVGATTENPSFELNAALLSRAQVLILHRLDAAALEQLLARAETAAGRPLPLDAEARAALVASADGDGRFLLNQAETLFSLDLPAPLDPAGLSALLHRRVAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLVAGEEPLYVLRRLTRFASEDIGLADPQALVQCMAARDAYAFLGSPEGELAIVQACLYLATAPKSNAAYKAQKAAWKSARDTGSLMPPAHILNAPTRLMKDIGYGHGYAYDHDSKDGFSGADYWPEGMAAQTYYRPVARGFEARIAERLAYWDGMRRDRDPAVDKSADKRADSQGHRDED
>NZ_CP047895.1|WP_160592472.1|1308441_1309590_+|PQQ-dependent-sugar-dehydrogenase
MSLPASLPITGFRRRLAPVAGAALLTIACSGQAQEPSAAPFTVTPVADFDAPWAMTFLPDGRMLVTEKAGQILLVAADGSARTALAGVPAVATGGQGGMHDVVLHPRFAANRLVYFSYVEQNDAGAKGVVLARGRLEEAGTPRLDKVEVIFRATPYVEGNGHFSGRIAFAPDGKLFFTNGERQKFDPAQDPAATLGKVLRLNDDGTPAKGNPLAAKGFHPAVWSYGHRNLLGLAFDARGNLWQQEMGPKGGDEVNLVLPGRNYGYPRVSNGDHYDGRDIPDHQPGDGFEAPKVWWNPAISPGGLIAYSGRMWPEWRGDLFIGGLSSKALIRVDVDGTNAQKGSQWDMGARIREVEEGPDGALWLLEDGAQGSQGRLLRLTRR
>NZ_CP047895.1|WP_160592471.1|1307581_1308106_-|ribosome-maturation-protein-RimP
MTDIATLTQLIEPEAKALGFALVRVAMIGGTSDPTLQVMAERPDTRQLTIDDCAALSRRLSDMLDAADPIEQAYRLEVSSPGIDRPLTRLSDFADWAGHEARLTLSEPLDGRKQFQGVLAGVDGETIRVDLGPRGEALLPFSGLKAAKLVLTDRLIAATAPLDADGADTIQVEG
>NZ_CP047895.1|WP_160592470.1|1305974_1307570_-|transcription-termination/antitermination-protein-NusA
MATAISANKAELLAIADSVAREKLIDKAIVIEAMEDAIQRAAKNRYGAENDIRAKLDPNSGDLRLWRVVEVVEAVDDYFKQVSVADAQKLEKGAKVGDFIVDPLPPIEFGRIQAQASKQIIFQKVRDAERERQFEEFKGRVGEIITGVVKRVEFGHVVVDLGRAEGVIRRDQQIPREVVRVGDRIRSLILRVIRENRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGVISHDGSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVSRVVIDEEEDRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDIMTETDASDKRQREFAERSEMFQNELDVDETLAQLLVAEGFTTLEEVAYIEQDEIATIEGFDEELAAELQNRAQEALDRREEANREERQSLGVEDALAAIPHLTEAMLVTLGKAGIKTLDDLADLATDELVARRRAEPRRRNNDQPREQDKGGILADYGLSEEQGNEIIMAARAHWFEGEDAVADTSQ
>NZ_CP047895.1|WP_160593868.1|1305196_1305937_-|DUF448-domain-containing-protein
MNDAPRGTRRAAADAERKCILTGQRADRDGLVRLALGPDGQVLPDVRAKAPGRGAWISADRTILDGAAARGRLEQALARAFRQPRIGVPEDLADRIAGQLERAALDRLGLEARAGTVLTGSERIETAARQGRVALLLHARDAAPDGSRRLDQALRVGSDAEGTALRGLVIAAPRAILSAALGRENAVHVGVVDAGAARRIGAALDRWHGFIGFGLRDEPCETASQGPIAAGAPDGAPAAAAANEGL
>NZ_CP047895.1|WP_160593867.1|1302153_1302558_-|30S-ribosome-binding-factor-RbfA
MNGARGGASGEPSVRLLRVGEQVRHALSEVLMRGDVHDDVLAAHSVSVTEVRMSPDLRHATVFVKPLLGADEKDVLDALKRNVKYLRGEVARRVNLKFSAQLKFLPDESFDEASRIDSVLRSPKVAQDLDREDD
>NZ_CP047895.1|WP_160592469.1|1300002_1302066_-|S9-family-peptidase
MWRAVPSDFRPCARRHACRGSRCADAGSTCPASPATLTGQDLFNLEVATDPQISPDGTIIAYVRRSNDIMTDRARPSIWTVDTRTGAHTPLVAGAGSHLRPRWSPDGTRLAYVSTAEGGGAQLYVRWMATGQTARVTGLPTAPSGIAWSPDGSRIAYTMLVPADAPSLAKPLKKPEGADWAKPLEIHDRLVYRTDSDGYLKPGLEQIFLVSAEGGAPRQLTFAKQPVGGSIDWTADGRALIFSANLTDKWQLEGFDTELHELDVASGAIRRLTDRRGPDQDPAVSPDGKWIAYTGFDDHGRAYEAGELWVMPRGGGTPRSLTAQLDRDVSSPVWAADSRSLYALQDDRGTTKVIRIGLDGSVRTVAEGLTDAGLDRPYAGGAFSVARDGSIAITAGTAQRPSDIALVRGGTRRQLTRLNAEWLGAKTLGEVRKISATAFDGKVIDSWLTLPPVPAAGGRHPLILEIHGGPHTAYGPSFATDNQLYASAGYAVLSVNPRGSTSYGEAFANEIDKTYPARDYDDLMSAVDAAIATGLIDPDNLFVTGGSGGGVLTSWIIGKTNRFRAAATQKPVIDWASFALTADNPAYFTRYWFGKKPWEDPEGYWARSPLSLVGNVKTPTLVVVGSEDFRTPVSESEQYYSALHLQGVPTMLVKVPGASHGGIAARPSQSAAKASAIISWFDRYRTR
>NZ_CP047895.1|WP_160592468.1|1299093_1299972_-|dienelactone-hydrolase-family-protein
MDELRQRAIALYDAFTHGPGGARDRRGFLRDMTLLAGSAAAAEALIAAIAPAAAAAAIVPADDPRLVTRTDEWASAPGRTMRAYVARPAKGRPRAAIVVIHENRGLNDHIRDVARRVALDGFVAVAPDFLAPGGGTPADADQARTMIGQLDLARTLADAQSAIGHAAALVPGRKAGVTGFCWGGALVLRLAVAGAPGLKAAVSYYGPAPDPAEAERVAVPVMIHLPALDTRVAATVRPFAGALMRAARPLELHEYPGANHAFNNDSSAERYDAAAATLAWKRTIGFFRTHLG
>NZ_CP047895.1|WP_160592474.1|1318986_1320792_-|copper-resistance-system-multicopper-oxidase
MTDQSHPAAPLDRRGLLKAAGAGLSALALPWFPGWAQPVSAGLATLPELTGPDVTLRIAHQMMMVDGRPRHAIGINGTVPGPLIRLKQGQTARLTVINELDEDSSIHWHGLLVPFHMDGVPGVSFPGIPAGGRFTYEFALQQAGTYWYHSHSGLQEQMGHYGPLIVEPDAPDPVAADREHVILLSDSSPIHPHMIMRRLKQMGGYFNYQKQTLFGQLAGRDQKAAERAAWGGMRMDPADVADVTGATYTYLVNGHGPAMPFAALFKPGERVRLRVINASAMTTFNLRIPGLALDIVAADGLPVRPVTVDEFQIAVAETYDVIVRPGDDRAYALVAESVDRSGMARAVLAPRPGMMPVFPALRPRPLATMKDMGMGGHNGGGHGGSGHDGVGAAACPPEHAAMGHCSPAAPAAPMDHGMRDFSLAPPTVRRTPTVQSISPMPVDRTGEPGQGLADVGHRVLTYRDLVSATRNPDPRPPAREIEIHLTGNMERYMWAFDGEKLSEVKAPITFRAGERVRVTLVNDTMMGHPIHLHGHYFELVTGHGDHAPRKHTVQVQPGGKLSFDLTADAVGDWAFHCHLLYHMHAGMMQIVSVRPDSDRAA
>NZ_CP047895.1|WP_160592475.1|1323916_1324195_-|hypothetical-protein
MIGTARIVTGGAGGGTGGAAVIPATAIFAARTEEAFVYVHDPRAGRVRARLVRIEAIGEAGVTLSAGLKAGEAIVATGLDRLRDGAQVRVVR
>NZ_CP047895.1|WP_160592476.1|1324191_1324929_-|biotin/lipoyl-binding-protein
MALALAGCKAAQPAPAPRAEPVPVRLVRVGADSGAMATITGTVRHAEETPLAFAQPGRVRDVLVDVGDTVSAGQLLATLETGPADANAVAAAEDARRAALELARLRTLAGQGWVTRARLETAEAGAAAANARAAAARFDQRYARIHAPGAGVILARTLDPGAIAAAGSPVLTLGDARGGLVFQLPLTDRQAAALRPGTPAELRLPALGPARSRASCAGSAGAATRRPGHSSAKSPCPPCPACVQG
>NZ_CP047895.1|WP_160592477.1|1325077_1325746_+|TetR/AcrR-family-transcriptional-regulator
MSGLPYPAAPDPAARAPGPGRPADPARRDAAIAAAQALFLAQGFERTSMAAIARAAGVAKPTLYAWFGDKAQLFAAAVTRKCETVLGSFDLPSAGGTPAELLTAAARRFLDLVLDPEALNTHRLVTMERERHPELGQLFLVHAIAFTKARFTALIAALAARGLAIDDPEQTASDLLGLLRGWPVLMWELSGPTMSPAELDAHAARCVGVALAGHRPGAVATG
>NZ_CP047895.1|WP_160592478.1|1325816_1326020_+|hypothetical-protein
MAMTAGSPAGDAAPADTLPEAEDIFYLCAPQMRLAMFRSCAEHETNDEIRGLARLATFRAAASRMPG
>NZ_CP047895.1|WP_160592479.1|1326023_1326704_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MTDPLSIRRLYGRAKGHKLRAGQALLVEETLPRVAVPEDGPLDAQRLFGAPRPLEFEIGFGAGEHLAAQAAMRPGHGFIGCEPFLNGVVGALAKIEDEELANVRLHMGDALGVLERLPDHSLERVYLLHPDPWPKARHAKRRMVNHGPLDLIAAKLRPGGEFRLGTDDPTYCRWSMMIMNARRDFVWQAATAQDFLTRPDDWPQTRYEAKARTKGHEVWYFRYLRV
>NZ_CP047895.1|WP_160592480.1|1326779_1327214_-|hypothetical-protein
MALMSLITLAALAAAPRPPAAGFSPAERTEILKAAGAVRRGAAWVLCADDPGPVSATIRAVDLNGDGRPEAIVTERSRFCAPRTGWLHAVLARARGGGWQLLARGEGQLRVIGRAVPGQWRDLRVTGADAPVILSHDGSVYRPR
>NZ_CP047895.1|WP_160592481.1|1327338_1328538_-|methionine-adenosyltransferase
MRSTYLFTSESVSEGHPDKVADQISDAIVDLFLSKDPEARIACETLTTTQRVVLAGEIRCRGVYENGAWAPGAEEEIERTVRETVKRIGYEQDGFHWQTFAFHNHLHGQSAHIAQGVDASAEKDEGAGDQGIMFGFACDETPDLMPATLDYSHKILARLAADRHAGTAPFLEPDAKSQVTLRFENGRPVAATAIVVSTQHKPGYDQGEKEAELHAYVKKVVAEVLPQGFVTNETVFHINPTGSFEIGGPDGDAGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKVDRSAAYVSRYLAKNIVAAGLARRCTIQLSYAIGVSEPLSLYVDTHGTGTVDEARIEAVLPTLVRLTPKGIRTHLGLNKPIYGPSAAYGHFGRTPEGDFFPWERTDLVEKLKAALA
>NZ_CP047895.1|WP_160592482.1|1330221_1330641_+|hypothetical-protein
MIQLLLPLLVQAMPVNPAPAAPAAIPPARAAQARCLAVLAIVANAQRSGVAAAKDLPSLEEDGARFAEVVGEAIVSETGMTREQVGALLGREVETVIALTPLPIAEARTCLLMARIVAPPPAPAAPATGPDTGRRGGAL
>NZ_CP047895.1|WP_160592483.1|1330637_1331054_+|VOC-family-protein
MIRPFHLAFPVHDLAAARAFYGGVLGCREGRSADHWIDFDLYGHQIVAHLSETARAAEATNPVDGHDVPVPHFGVVLTMDQWQQLADRVAAAGIAFGIAPHIRFKGQPGEQATMFFRDPSGNALEFKAFADDAMLFAT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1445693 : 1495651

Rhodobacter_phage(16.0%)

capsid,tRNA,integrase,tail,transposase,portal

attL 1445402:1445418|attR 1494048:1494064

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1445402:1445418	attL	NA	NA	NA	NA
WP_160592573.1\|1445693_1446431_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_160592574.1\|1446434_1446824_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_160592575.1\|1446964_1448380_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	9.0e-29	31.3
WP_160592576.1\|1448411_1448861_-	MaoC family dehydratase	NA	NA	NA	NA
WP_160592577.1\|1448953_1450222_-	alkaline phosphatase family protein	A0A068EF32	Penguinpox_virus	4.2e-54	33.6
WP_160592578.1\|1450214_1451315_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_160592579.1\|1452038_1452608_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_160592580.1\|1452735_1453338_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_160592581.1\|1453476_1454364_-	TraB/GumN family protein	NA	NA	NA	NA
WP_160593885.1\|1454426_1455026_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_160592582.1\|1455406_1456540_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.3e-49	35.2
WP_160592583.1\|1456529_1456853_+	hypothetical protein	V9QL93	Rhizobium_phage	1.7e-07	42.5
WP_160592584.1\|1457213_1458281_+\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	9.6e-76	46.4
WP_160593886.1\|1458368_1458635_+	hypothetical protein	I3UM19	Rhodobacter_phage	2.1e-08	48.2
WP_160592585.1\|1458634_1460911_+	hypothetical protein	NA	NA	NA	NA
WP_160593887.1\|1461001_1461538_+	hypothetical protein	NA	NA	NA	NA
WP_160592586.1\|1461537_1461756_+	hypothetical protein	NA	NA	NA	NA
WP_160592587.1\|1461752_1462592_+\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	1.5e-10	34.1
WP_160592588.1\|1462588_1462900_+	gene transfer agent family protein	NA	NA	NA	NA
WP_160592589.1\|1462902_1463103_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_160592590.1\|1463095_1463683_+\|tail	tail tape measure protein	D6PGQ1	uncultured_phage	3.7e-05	40.8
WP_160592591.1\|1463720_1466009_+	DUF2460 domain-containing protein	A0A023MH11	Escherichia_phage	1.4e-47	29.1
WP_160592592.1\|1466005_1466824_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.8e-26	29.2
WP_160592593.1\|1466820_1467201_+	peptidoglycan endopeptidase	NA	NA	NA	NA
WP_160592594.1\|1467182_1469339_+	hypothetical protein	M4QNR6	Tetraselmis_viridis_virus	9.4e-46	28.8
WP_160592595.1\|1469606_1470794_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_160592596.1\|1470793_1472947_-	hypothetical protein	NA	NA	NA	NA
WP_160592597.1\|1472957_1473344_+	hypothetical protein	NA	NA	NA	NA
WP_160592598.1\|1473333_1473657_-	hypothetical protein	NA	NA	NA	NA
WP_160592599.1\|1473812_1475159_-	hypothetical protein	M4M9M5	Vibrio_phage	3.1e-47	39.4
WP_160592600.1\|1475158_1477093_-	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	5.1e-75	43.6
WP_160592601.1\|1477094_1478630_-	hypothetical protein	Q6QIC1	Burkholderia_phage	7.0e-112	46.1
WP_160592602.1\|1478626_1478989_-	hypothetical protein	NA	NA	NA	NA
WP_160592603.1\|1478997_1479540_-	DUF3486 family protein	A0A1B0T6K5	Pelagibaca_phage	9.1e-06	28.5
WP_160592604.1\|1479541_1479835_-	hypothetical protein	NA	NA	NA	NA
WP_160592605.1\|1479831_1480125_-	hypothetical protein	NA	NA	NA	NA
WP_160592606.1\|1480241_1480661_-	hypothetical protein	NA	NA	NA	NA
WP_160592607.1\|1480744_1481455_-	regulatory protein GemA	NA	NA	NA	NA
WP_160592608.1\|1481376_1481877_-	hypothetical protein	NA	NA	NA	NA
WP_160592609.1\|1481891_1482122_-	hypothetical protein	NA	NA	NA	NA
WP_160592610.1\|1482386_1482959_-	hypothetical protein	NA	NA	NA	NA
WP_160592611.1\|1483103_1483334_-	hypothetical protein	NA	NA	NA	NA
WP_160593888.1\|1483334_1483715_-	hypothetical protein	NA	NA	NA	NA
WP_160592612.1\|1484287_1485049_-	ATP-binding protein	L7P7S2	Pseudomonas_phage	8.8e-39	43.0
WP_160592613.1\|1485045_1486845_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0M4U788	Ralstonia_phage	4.2e-31	30.6
WP_160592614.1\|1486939_1487221_-	transcriptional regulator	A0A2H4J3B6	uncultured_Caudovirales_phage	1.8e-05	42.3
WP_160592615.1\|1487297_1487933_+	hypothetical protein	A5X9F5	Aeromonas_virus	3.3e-15	32.1
WP_160592616.1\|1487932_1488340_+	hypothetical protein	NA	NA	NA	NA
WP_160592617.1\|1488500_1488707_-	hypothetical protein	NA	NA	NA	NA
WP_160593889.1\|1488838_1489639_-	DNA adenine methylase	A0A291AUP9	Sinorhizobium_phage	5.9e-86	62.3
WP_160592618.1\|1489921_1490854_+	hypothetical protein	G8GWE4	Rhodobacter_phage	2.5e-43	43.8
WP_160592619.1\|1490895_1491228_+	DUF2190 family protein	NA	NA	NA	NA
WP_160592620.1\|1491313_1492243_+	hypothetical protein	R9U4B8	Rhizobium_phage	4.9e-68	43.4
WP_160592621.1\|1492276_1492531_-	hypothetical protein	NA	NA	NA	NA
WP_160592622.1\|1492674_1492881_+	hypothetical protein	NA	NA	NA	NA
WP_160592623.1\|1492877_1493603_+	DUF1320 domain-containing protein	Q6QIB3	Burkholderia_phage	5.3e-09	47.0
WP_160592624.1\|1493599_1494106_+	phage virion morphogenesis protein	A0A1B1P725	Rhodovulum_phage	8.8e-11	38.3
1494048:1494064	attR	NA	NA	NA	NA
WP_160592625.1\|1494102_1494513_+	hypothetical protein	NA	NA	NA	NA
WP_160592626.1\|1494523_1494709_+	hypothetical protein	NA	NA	NA	NA
WP_160592627.1\|1494712_1495651_+	hypothetical protein	G8GWF3	Rhodobacter_phage	5.9e-29	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage