CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP028228	Lactobacillus plantarum strain SRCM101187 plasmid unnamed2, complete sequence	0 crisprs	NA	0	1
NZ_CP028227	Lactobacillus plantarum strain SRCM101187 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0
NZ_CP028226	Lactobacillus plantarum strain SRCM101187 chromosome, complete genome	3 crisprs	csa3,WYL,DinG,cas3,DEDDh,cas1,cas8e,cse2gr11,cas7,cas5,cas6e	14	5

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12707 : 21288

Enterococcus_phage(42.86%)

integrase,transposase

attL 2657:2716|attR 29817:29879

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2657:2716	attL	NA	NA	NA	NA
WP_021356781.1\|12707_13508_+	ParA family protein	F0PIG8	Enterococcus_phage	1.6e-67	50.6
WP_027821221.1\|13509_13857_+	hypothetical protein	NA	NA	NA	NA
WP_021356783.1\|14446_15349_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.1e-51	40.3
WP_160246195.1\|15435_16068_-	recombinase family protein	B8Q5B2	Abalone_shriveling_syndrome-associated_virus	8.1e-14	33.0
WP_119463146.1\|16391_16994_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q716C2	Shigella_phage	2.0e-14	28.8
WP_021729932.1\|17122_18073_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.9e-99	55.0
WP_060418153.1\|18087_19014_-	ribonucleoside-diphosphate reductase	A0A2H4P8A9	Corynebacterium_phage	1.6e-34	31.1
WP_024002714.1\|19119_21288_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	6.2e-255	60.3
29817:29879	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028226

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028226_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028226_1

2343368-2344010

TypeI-E

Consensus_repeat	Method
GGATCACCCCCGTATACACGGGGAACAG	CRISPRCasFinder
GGATCACCCCCGTATACACGGGGAACAG	CRT
GGATCACCCCCGTATACACGGGGAACAG	PILER-CR

10 spacers

cas1,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP028226_1

>merge|NZ_CP028226|1|2343368-2344010|CRISPRCasFinder,CRT,PILER-CR
AGATTACCCCCGTATACACGGGGAACAGGTTGAGCCAGAAGCACCTATCTACAATGACACGGGATCACCCCCGTATACACGGGGAACAGTAAGCTGAACTAACAAGCTGGTTGATATCCAAAGGATCACCCCCGTATACACGGGGAACAGACGTACAAAAAACTGTTGGTAATCTGGAAACTAGGATCACCCCCGTATACACGGGGAACAGCCCATACCAATATCGGAGGACCAATTACTATCGGGATCACCCCCGTATACACGGGGAACAGAATTGCATTTCCCTGTCGGTAAGATTCCCACAGGGATCACCCCCGTATACACGGGGAACAGCGTCTACCTATTCCGCCACAAGCACACGTTAGGGGATCACCCCCGTATACACGGGGAACAGATGGAAGCGATGAGATGAGAGAAAAATACCATAGGATCACCCCCGTATACACGGGGAACAGTTCCAGTCCGTGATATAAGTAACTAAGTCATCGTTTAGGATCACCCCCGTATACACGGGGAACAGTAGTCGGGTGCCACGAATATGAGCAAAGTTGTGAGGATCACCCCCGTATACACGGGGAACAGTGGTAGGTGATTAAATGGGGCTAATACAGCGTAGGATCACCCCCGTATACACGGGGAACAG

>NZ_CP028226|1|1|2343368-2344010|CRISPRCasFinder
AGATTACCCCCGTATACACGGGGAACAG	GTTGAGCCAGAAGCACCTATCTACAATGACACG
GGATCACCCCCGTATACACGGGGAACAG	TAAGCTGAACTAACAAGCTGGTTGATATCCAAA
GGATCACCCCCGTATACACGGGGAACAG	ACGTACAAAAAACTGTTGGTAATCTGGAAACTA
GGATCACCCCCGTATACACGGGGAACAG	CCCATACCAATATCGGAGGACCAATTACTATCG
GGATCACCCCCGTATACACGGGGAACAG	AATTGCATTTCCCTGTCGGTAAGATTCCCACAG
GGATCACCCCCGTATACACGGGGAACAG	CGTCTACCTATTCCGCCACAAGCACACGTTAGG
GGATCACCCCCGTATACACGGGGAACAG	ATGGAAGCGATGAGATGAGAGAAAAATACCATA
GGATCACCCCCGTATACACGGGGAACAG	TTCCAGTCCGTGATATAAGTAACTAAGTCATCGTTTA
GGATCACCCCCGTATACACGGGGAACAG	TAGTCGGGTGCCACGAATATGAGCAAAGTTGTGA
GGATCACCCCCGTATACACGGGGAACAG	TGGTAGGTGATTAAATGGGGCTAATACAGCGTA
GGATCACCCCCGTATACACGGGGAACAG

>NZ_CP028226|1|1|2343368-2344010|CRT
AGATTACCCCCGTATACACGGGGAACAG	GTTGAGCCAGAAGCACCTATCTACAATGACACG
GGATCACCCCCGTATACACGGGGAACAG	TAAGCTGAACTAACAAGCTGGTTGATATCCAAA
GGATCACCCCCGTATACACGGGGAACAG	ACGTACAAAAAACTGTTGGTAATCTGGAAACTA
GGATCACCCCCGTATACACGGGGAACAG	CCCATACCAATATCGGAGGACCAATTACTATCG
GGATCACCCCCGTATACACGGGGAACAG	AATTGCATTTCCCTGTCGGTAAGATTCCCACAG
GGATCACCCCCGTATACACGGGGAACAG	CGTCTACCTATTCCGCCACAAGCACACGTTAGG
GGATCACCCCCGTATACACGGGGAACAG	ATGGAAGCGATGAGATGAGAGAAAAATACCATA
GGATCACCCCCGTATACACGGGGAACAG	TTCCAGTCCGTGATATAAGTAACTAAGTCATCGTTTA
GGATCACCCCCGTATACACGGGGAACAG	TAGTCGGGTGCCACGAATATGAGCAAAGTTGTGA
GGATCACCCCCGTATACACGGGGAACAG	TGGTAGGTGATTAAATGGGGCTAATACAGCGTA
GGATCACCCCCGTATACACGGGGAACAG

>NZ_CP028226|1|1|2343369-2344010|PILER-CR
GATTACCCCCGTATACACGGGGAACAGG	TTGAGCCAGAAGCACCTATCTACAATGACACGG
GATCACCCCCGTATACACGGGGAACAGT	AAGCTGAACTAACAAGCTGGTTGATATCCAAAG
GATCACCCCCGTATACACGGGGAACAGA	CGTACAAAAAACTGTTGGTAATCTGGAAACTAG
GATCACCCCCGTATACACGGGGAACAGC	CCATACCAATATCGGAGGACCAATTACTATCGG
GATCACCCCCGTATACACGGGGAACAGA	ATTGCATTTCCCTGTCGGTAAGATTCCCACAGG
GATCACCCCCGTATACACGGGGAACAGC	GTCTACCTATTCCGCCACAAGCACACGTTAGGG
GATCACCCCCGTATACACGGGGAACAGA	TGGAAGCGATGAGATGAGAGAAAAATACCATAG
GATCACCCCCGTATACACGGGGAACAGT	TCCAGTCCGTGATATAAGTAACTAAGTCATCGTTTAG
GATCACCCCCGTATACACGGGGAACAGT	AGTCGGGTGCCACGAATATGAGCAAAGTTGTGAG
GATCACCCCCGTATACACGGGGAACAGT	GGTAGGTGATTAAATGGGGCTAATACAGCGTAG
GATCACCCCCGTATACACGGGGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028226.1\|WP_152706990.1\|2335212_2336616_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|376478
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP028226.1\|WP_003638526.1\|2340616_2340811_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP028226.1\|WP_003645192.1\|2341447_2341759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_063724762.1\|2336619_2337555_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
NZ_CP028226.1\|WP_033608604.1\|2337887_2339852_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP028226.1\|WP_057717606.1\|2334040_2334634_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028226.1\|WP_003640274.1\|2334675_2335191_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP028226.1\|WP_057717620.1\|2358860_2359343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
NZ_CP028226.1\|WP_003644288.1\|2340073_2340595_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP028226.1\|WP_003640279.1\|2340847_2341204_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886

Protein	Function_ID	Function_description	E-value
NZ_CP028226.1\|WP_152706990.1\|2335212_2336616_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	6.29763e-45
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	6.30373e-58
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.35673e-28
NZ_CP028226.1\|WP_003638526.1\|2340616_2340811_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.05419e-84
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.44024e-71
NZ_CP028226.1\|WP_063724762.1\|2336619_2337555_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	1.19442e-168
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	5.16147e-102
NZ_CP028226.1\|WP_003644288.1\|2340073_2340595_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.07718e-91
NZ_CP028226.1\|WP_057717606.1\|2334040_2334634_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	2.50894e-82
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.02605e-83
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.44455e-131
NZ_CP028226.1\|WP_003640274.1\|2334675_2335191_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	4.13817e-88
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	2.37505e-179
NZ_CP028226.1\|WP_033608604.1\|2337887_2339852_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP028226.1\|WP_003640279.1\|2340847_2341204_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	8.52452e-62
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.15429e-151
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.50103e-45

>NZ_CP028226.1|WP_152706989.1|2341930_2343193_-|AAA-family-ATPase
MAFKTPLADQMRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKVIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTTENPIMSIVPAIRSRCQIFEFQPLSDTDIEIALRRAVTDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFSYDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVVRRLREIPYTYIGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCISPKSGSFDQSWEKLDQDTQNPSQHPMPRGLRDMHYKHSEEITGGGLIDNPFQMPHQIAQQNYMPKGLAGRRYYYPKDNENERKLGAQYLKLHRFIYNEDYHE
>NZ_CP028226.1|WP_003645192.1|2341447_2341759_+|hypothetical-protein
MATVLPKAVKVWMGANILQIEFDNGEFRYMRTHFIDDYVSAWSPKKGKGKRRNLWLMPSWEWLGANARIESDGTVVLFEKDVYTAQELWHNSVTRIDLVSGVH
>NZ_CP028226.1|WP_003640279.1|2340847_2341204_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYLYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKLANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>NZ_CP028226.1|WP_003638526.1|2340616_2340811_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>NZ_CP028226.1|WP_003644288.1|2340073_2340595_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKDREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>NZ_CP028226.1|WP_033608604.1|2337887_2339852_+|threonine--tRNA-ligase
MASINVKFPDGAEKQFDAGVTTEEIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPNIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAANNDQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENKEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKHYSRGASK
>NZ_CP028226.1|WP_063724762.1|2336619_2337555_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTAVYQDPDVRQFLAAHQNELSSDALERSAAKLYEFCEEKRKIARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQMQEQQAAHALQQRVRSISMPKNIQSADLKTYDQDGDRATALMAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANALAAKGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTLSQKGDEEPVKAQRIMQRVRYLASEIEMVGRNRRLNPDA
>NZ_CP028226.1|WP_152706990.1|2335212_2336616_+|helicase-DnaB
MPNDEPLTPKTGLVVPQAPALSAAQQAVLAELYLPLMGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNVDLPTVLAARRKLEATGLLRSYYQQDELGAMYIYQLQAPLLALQFFADDLLSVLLLDTVGELRYQQLAGDFAAQPIDLTAAKDVTANILDVFHVDSQKVTTPPLSVQKVRAQLAANEPAEDHSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIITESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPAVSSQQVATEATVATTTTKDNKASAQLSTAEQQLVTYAKQTAPYDFLSALKQEKHGFVTSGENRLVHDLIGRGVLPNAVINMVIYYLLQNRELAALNRNLLETVANDWQQHGITTPEAALMYLKQRKQPKSTPTRRKNNRPTRKEIMPKWAQQQQQTESGKQPARTGKQITAAQRKQLADRLAKLETNSEKED
>NZ_CP028226.1|WP_003640274.1|2334675_2335191_+|transcriptional-repressor-NrdR
MQCPHCHHNGSRVVDSRPTDDGRVIRRRRECENCGFRFTTFERVEATPLLVIKKNGAREEFNREKVLRGIIRSAEKRPVSMETMTGVVDDVENKVRSLGENEISSQVIGEYVMEQLADIDEISYIRFASVYRQFKDMHVFLNELQDMMERDKVKLAKPSAKTTHAPKRKKD
>NZ_CP028226.1|WP_057717606.1|2334040_2334634_+|dephospho-CoA-kinase
MTKLIGLTGGIATGKSTVSKLLATKLPIVDADKIAWQVEGPGQPTTQKIVAHFGQQAVLADGRLNRSWLGQLVFNDAQALQALTAITRLPIQYAMFEAIVAANQQQPDAIILDVPLLFESGWQHVCDQVLVVTAPPAVVLQRLMARNHLSQQAAQARIDSQMPLAQKVARADVVIDNGANIDKTKAAVLKWLKTITK
>NZ_CP028226.1|WP_152706988.1|2345011_2345737_+|amino-acid-racemase
MENCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVVLNDAQIPDRTAYILDHNCTNPLPSLKADVQLLDRLGVKFIVMTCNTAHYFMPGLTAITNVPILNMPALAVEAACQLQQSRPLRIGVLATTGTLKSQLYQQLILAKGHIPVVPTEQQQAQVMALIYEDIKQHDYVNRVKFHGLIDQLLNAANCDAAILGCTELSVAQDTAPYGSERIIDAQHELARVTVQCAQAAKTTMILR
>NZ_CP028226.1|WP_152706987.1|2346559_2347510_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKFGAKKPELSELSRIHDRLTFLYLEHAKLDRQDSAIRVSDARGVVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSRLLEAQARLFSNQRSRLAVARKMYQMRFPNDDVTTLSMQKLRGKEGARVRQVYRLESERTGVSWTRREYNPDNFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAETSIPVAFDIVAASTADEDIARSTRLAMRDAFVDGKLLRRMVSDLKAILGVSETTTEVSNLSLWDDRLGLQEFGVQYHETEVGGIE
>NZ_CP028226.1|WP_160246161.1|2349379_2352127_+|CRISPR-associated-helicase-Cas3'
MTEFSRLAQSLWAKKRSDDGQRLWLPLIVHLKDCENTINWLFNHWLSEGQRQQLSEVTSEEDIQRLVKFLGFTHDIGKATPAFQTKPAYNGDHQLDQLLIEQLMQNGFRDLASLNLSSARESPHAIAGEAILESFGVNPTVGAIIGGHHGQTASASPKRQIKDYTANYYQNDNQPDLQMAWQQVQRELVAYGLHTAGYQTTADIPTLNQPEAVILTGLLIMADWLASSEYLNENPDKPLFPLVTTMQSATDINLQARFRDAITTWQSDDEWVPAPLDRNRDPYQVRFGFHARPVQAAITNALEATTDPGMAIVEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLERVADEQSARLSIKLMHGKAQFNQMYKRLPNASNVNSTDEHDGAVTVNSWFGGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNKYLLRAIEWLGAYHVPVVVLSATLPKIKRNQLLKAYIKGKYGRRYHQILKVAPTGWEDTQAYPLLSMLDGPDIKQLTNFEGQSDQAALTLEVQRNNQDDQELIMRLLKQLREGGIAGIIVNTVKRAQDLAALIPADVPLMVLHSAFLAPDRAQQEMKLQAAIGKHGERPAKLVVIGTQVLEQSLDIDFDVLYTDIAPMDLILQRAGRLHRHQMIKRPRRFQRPQLNIMGIKGFGDYGDGNEAVYGKYLLMKTDHFLKNQIKLPDDISTLVQQVYDLATDIQVPGIKAAAEEFSTKLKAEQQKAQVFQICEPQLKHGQSIHGWLDREHRDIATDQQASAAVRDIQETLEVILIQHMNHDDFLLDGRRLDEVAPAEIAQQTLRLPVAVTPNITKAINQLEDLTRPYHARWQDDIWLRGVLVLPLDQKLTAEFSKWRLSYSSQLGLSYSKEE
>NZ_CP028226.1|WP_152706985.1|2352123_2353863_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKTVRMQTFNLTTDPWIVVIDARTNQAVTVSLIELFQNAQYYRRLAGDMRAQDLAILRLLLAILTTIYTRYGADNQAYEWLTMNDMFEVEHVDEDYGIDEIHDDLKQTWADLFASGHFSTIVTDYLQCHAGQFDLFGDQPFYQVTASAYDEFVPEAKSVARSKRTGKPTGQVAVRQMNRRISESGNSVALFAPKVDETKNELTLAELVRWLIMYQNYTGVTDKTKINSDEKFSNGAGWLYRLNPVYASGRSLFEILMLNLVLVPTVSDEQYIVQQPVWEYATLTAYLQERQRQQVPDNLAALYTTWSRLLHLEWDDHQRPTIYSAGIPMFDTEDALIEPMTLWRQDKKTSRFRPAVNGIKYMGKAMWRNFGQYVNVNRSDDIYEAGIVAWLHYLKTEGLVADDRQLWLASTALISDGNMSSQMPATEVYDDMQIQADVLFDEATADHWPVRIEEVIELTQRIGDGYYHFAATVGQIRNIDAKQFAQRHSAQFYASLNRPFKDWLASLTGNDDRDAKIKEWRQTLQQLTLQASSVMMATSSSRDVRGIVERDKNNVPRQVNIFTANDQFRRLVFTQLSGR
>NZ_CP028226.1|WP_152706984.1|2353876_2354482_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MESKIQSATISIIRQLYNNGNLNKGVLASVRHATALTSPQAQTLWPVMMAHLEPNMLSQDGQPTKAEVAVYTAIRFYAIQQQGTESLVYGPANPHADVKDQGMPLFRALARLRRNEETRVALDRRMQPLLATTNVASIINALTHLVSMLKANDQLQKIDYPRLAQDLYWFQQDYEHASQVRLQWGQQYYRPLTVTTEGKKN
>NZ_CP028226.1|WP_057717616.1|2354481_2355561_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MMTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVTRARVSSQSWKRAVRQSFKDDTVTVGFRTKAAAQLLKQALQKLTPELNDDDAWKQVNAVFKLASVKLDKDEETSALLLVSPGQIDQLAQYVTDNADEELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVDAAAQVAHAISTHEVVPEFDYFTALDDLQPEDSTGAAMLGTLEFNSATLYRYANVNINELIANLGETAAIDGIREFVKAFVLSMPTGKQNTFANKTLPNYVMVTLRPDTPVNLVSGFEDPVASKTGYVKQSVQQLATAYQAALSFVEQPILNVDLGADESQVATPADSLTGLLEQLVAKLTEVVKDEDGND
>NZ_CP028226.1|WP_160246162.1|2355541_2356249_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIKLTAPLQSYGNEANFDRRTSYDYPSKSAIIGMVAAALGYSRRDPRIKTLNQLAYAVRIDQPAKPLTDFQIVEWKRNRRKLTYRDYLQDAVFMVALGSEDGGFIDQIDWAIRHPHFQLALGRRANVPAGPMMTAIRSGRNPVQVLQAASWQASQFYMRQIRHHTFVAELIADAVLLPDYPSSMVKDAVVSFDQRHRQYGFRAVAVDRVSLENPYFATKDADTEHDIMNYL
>NZ_CP028226.1|WP_152706982.1|2356262_2356934_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDTNNRRKIKDLSHLGAYHNWVEQSFPDEINSGQRQRHLWRIDRLNGKSYLLLLSATRPAPKEFERYGVAGTAVTKSYDAWLDQLKVGMVMRFRLTANPTHSIVDPNHPKGRVVPHVTIEQQKQWLADRAIRAGFELVDHRETTSDKIHEFAFDVVSHDWPMLHRAKGHGVRLSRVTFEGLLCVKDLPTFKQTLTRGIGREKAFGMGLMTVIPEVQ
>NZ_CP028226.1|WP_160246163.1|2357543_2358857_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLIYRHRHKDDIEFKQLTPEAQPFITIMIPAHNEEVMIEHTINYLMNNLNYEKYEVLVTDDGSTDETPAILERLQSVYDNLRVVTIKKNQGKAHAFNVGVGFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRHDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVATHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>NZ_CP028226.1|WP_057717620.1|2358860_2359343_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKLWQTLVAIITWICVAVPVYWTISSTLLANNPQFIHAWKYEEGKTLFYFFDRFFIIAFILIAIVVIVSTIHNNHRVKQHISKERQYDEDQLDIRKRQLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHRLYED

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP028226_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028226_2

2348497-2348829

TypeI-E

Consensus_repeat	Method
GGATCACCCCCGCATACACGGGGAATAG	CRISPRCasFinder
GGATCACCCCCGCATACACGGGGAATAG	CRT
GGGATCACCCCCGCATACACGGGGAATAG	PILER-CR

5 spacers

cas1,cas3,cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP028226_2

>merge|NZ_CP028226|2|2348497-2348829|CRISPRCasFinder,CRT,PILER-CR
GGGTTACCCCCGTATACACGGGGAATAGTTTTTAAACCAGTCGAAATCGACGGGTTTAGAAGGAGCACCCCCACATACACGGGGAATAGCCACCATTCGGATACTTAGAAGTGTCGATCGTGGGATCACCCCCGCATACACGGGGAATAGTACCCGGCAATAACTGCACTAGCTGTTTCGCAAGGATCACCCCCGCATACACGGGGAATAGCCAAGTCCCAATGGGCTTTCGATGTTGATGTTGGGATCACCCCCGCATACACGGGGAATAGCAGCTAGCGAATTGGTTGGATAATGGCGGTTGGGGATCACCCCCGCATACACGGGGAATAG

>NZ_CP028226|2|2|2348497-2348829|CRISPRCasFinder
GGGTTACCCCCGTATACACGGGGAATAG	TTTTTAAACCAGTCGAAATCGACGGGTTTAGAA
GGAGCACCCCCACATACACGGGGAATAG	CCACCATTCGGATACTTAGAAGTGTCGATCGTG
GGATCACCCCCGCATACACGGGGAATAG	TACCCGGCAATAACTGCACTAGCTGTTTCGCAA
GGATCACCCCCGCATACACGGGGAATAG	CCAAGTCCCAATGGGCTTTCGATGTTGATGTTG
GGATCACCCCCGCATACACGGGGAATAG	CAGCTAGCGAATTGGTTGGATAATGGCGGTTGG
GGATCACCCCCGCATACACGGGGAATAG

>NZ_CP028226|2|2|2348497-2348829|CRT
GGGTTACCCCCGTATACACGGGGAATAG	TTTTTAAACCAGTCGAAATCGACGGGTTTAGAA
GGAGCACCCCCACATACACGGGGAATAG	CCACCATTCGGATACTTAGAAGTGTCGATCGTG
GGATCACCCCCGCATACACGGGGAATAG	TACCCGGCAATAACTGCACTAGCTGTTTCGCAA
GGATCACCCCCGCATACACGGGGAATAG	CCAAGTCCCAATGGGCTTTCGATGTTGATGTTG
GGATCACCCCCGCATACACGGGGAATAG	CAGCTAGCGAATTGGTTGGATAATGGCGGTTGG
GGATCACCCCCGCATACACGGGGAATAG

>NZ_CP028226|2|2|2348618-2348829|PILER-CR
GGGATCACCCCCGCATACACGGGGAATAG	TACCCGGCAATAACTGCACTAGCTGTTTCGCA
AGGATCACCCCCGCATACACGGGGAATAG	CCAAGTCCCAATGGGCTTTCGATGTTGATGTT
GGGATCACCCCCGCATACACGGGGAATAG	CAGCTAGCGAATTGGTTGGATAATGGCGGTTG
GGGATCACCCCCGCATACACGGGGAATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028226.1\|WP_152706990.1\|2335212_2336616_+\|helicase-DnaB	unknown	unknown	gnl\|CDD\|226138
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP028226.1\|WP_003638526.1\|2340616_2340811_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP028226.1\|WP_003645192.1\|2341447_2341759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_063724762.1\|2336619_2337555_+\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
NZ_CP028226.1\|WP_033608604.1\|2337887_2339852_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|376478
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028226.1\|WP_063724768.1\|2360558_2361695_+\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
NZ_CP028226.1\|WP_063724767.1\|2360031_2360562_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
NZ_CP028226.1\|WP_057717620.1\|2358860_2359343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
NZ_CP028226.1\|WP_003644288.1\|2340073_2340595_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP028226.1\|WP_003640279.1\|2340847_2341204_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886

Protein	Function_ID	Function_description	E-value
NZ_CP028226.1\|WP_152706990.1\|2335212_2336616_+\|helicase-DnaB	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	6.29763e-45
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.02605e-83
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.35673e-28
NZ_CP028226.1\|WP_003638526.1\|2340616_2340811_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.32915e-16
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.05419e-84
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.44024e-71
NZ_CP028226.1\|WP_063724762.1\|2336619_2337555_+\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	1.19442e-168
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	5.16147e-102
NZ_CP028226.1\|WP_033608604.1\|2337887_2339852_+\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	6.30373e-58
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.44455e-131
NZ_CP028226.1\|WP_063724768.1\|2360558_2361695_+\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
NZ_CP028226.1\|WP_063724767.1\|2360031_2360562_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	5.32184e-67
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	2.37505e-179
NZ_CP028226.1\|WP_003644288.1\|2340073_2340595_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.07718e-91
NZ_CP028226.1\|WP_003640279.1\|2340847_2341204_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	8.52452e-62
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.15429e-151
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.50103e-45

>NZ_CP028226.1|WP_152706987.1|2346559_2347510_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKFGAKKPELSELSRIHDRLTFLYLEHAKLDRQDSAIRVSDARGVVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSRLLEAQARLFSNQRSRLAVARKMYQMRFPNDDVTTLSMQKLRGKEGARVRQVYRLESERTGVSWTRREYNPDNFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAETSIPVAFDIVAASTADEDIARSTRLAMRDAFVDGKLLRRMVSDLKAILGVSETTTEVSNLSLWDDRLGLQEFGVQYHETEVGGIE
>NZ_CP028226.1|WP_152706988.1|2345011_2345737_+|amino-acid-racemase
MENCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVVLNDAQIPDRTAYILDHNCTNPLPSLKADVQLLDRLGVKFIVMTCNTAHYFMPGLTAITNVPILNMPALAVEAACQLQQSRPLRIGVLATTGTLKSQLYQQLILAKGHIPVVPTEQQQAQVMALIYEDIKQHDYVNRVKFHGLIDQLLNAANCDAAILGCTELSVAQDTAPYGSERIIDAQHELARVTVQCAQAAKTTMILR
>NZ_CP028226.1|WP_152706989.1|2341930_2343193_-|AAA-family-ATPase
MAFKTPLADQMRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKVIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTTENPIMSIVPAIRSRCQIFEFQPLSDTDIEIALRRAVTDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFSYDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVVRRLREIPYTYIGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCISPKSGSFDQSWEKLDQDTQNPSQHPMPRGLRDMHYKHSEEITGGGLIDNPFQMPHQIAQQNYMPKGLAGRRYYYPKDNENERKLGAQYLKLHRFIYNEDYHE
>NZ_CP028226.1|WP_003645192.1|2341447_2341759_+|hypothetical-protein
MATVLPKAVKVWMGANILQIEFDNGEFRYMRTHFIDDYVSAWSPKKGKGKRRNLWLMPSWEWLGANARIESDGTVVLFEKDVYTAQELWHNSVTRIDLVSGVH
>NZ_CP028226.1|WP_003640279.1|2340847_2341204_+|50S-ribosomal-protein-L20
MARVKGGTVTRKRRKRILKLAKGYRGAKHIQFKVAKDQVMKSYLYAFRDRRRRKSDFRRLWIARINAAARINDISYSQLMHGLKLANVDVNRKMLADLAVNDADAFKALVDTAKKALA
>NZ_CP028226.1|WP_003638526.1|2340616_2340811_+|50S-ribosomal-protein-L35
MPKQKTNRAAAKRFKVTAKGKIKSANAFTSHRFHGKTKKQRRQLRGTAIIEKPMVKTYHKLLQK
>NZ_CP028226.1|WP_003644288.1|2340073_2340595_+|translation-initiation-factor-IF-3
MTIAKDSMVNDGIRAREVRLIASDGEQLGVKSRQEAMQIAEDASLDLVLVAPKAKPPVARIMDYGKYRFEQQKKDREARKKQKVVSIKEVRLSPAIDTNDFNTKLKHAEKFLSKGDKVRVSIRFKGRAITHKDIGRQVLNRMIEATKEFSTVEAYPKMDGRSMFLVLAPKTDK
>NZ_CP028226.1|WP_033608604.1|2337887_2339852_+|threonine--tRNA-ligase
MASINVKFPDGAEKQFDAGVTTEEIAKSISPSLAKRSVAGKFNDQIVDYRQPLTTDGSIEIIAADSEDGLNVLRQTAAQVLANAVKQLFPNIHFGSGEGNANGFFFDTDNPDEDGKQVSEDDLEAISDKMAAIIKQDLPIEREVLSKADALALVGDNPYQQDLVNERAAANNDQVVVYKQGDFVDLSDGAQLASTGKVKVFKLLSVAGAYWQGKSSNPMLQRIYGTAFLKQKDLDADLKRRQEARERDHRVIGNELDLFFVDPKVGNGLPYWMPNGATIRRQIERYIIDKEVANGYQHVYTPVLANLDVYKQSGHWDHYREDMFPPMDMGDGEQLELRPMNCPSHIQIYNHHIRSYRELPLRIAELGMMHRYEKSGALTGLSRVREMTLNDGHTFVALDQIEEEFKKILSLMVEVYEDFDISDYRFRLSYRDPENKEKYFDDDAMWERSQKMLKSAMDDMGLDYFEAEGEAAFYGPKLDVQTKTALGGEETLSTIQLDFLLPERFDLKYVGADGEEHRPVMIHRGLVSTMERFVAYLTEIYKGAFPTWLAPKQVTIIPVNNGAHGAYAETVRRRLAAEGVRVSIDDRNEKMGYKIRESQTKKVPYLLVVGDQEVANGSVSVRKYGEERTESEAVDMFIGAITQEIKHYSRGASK
>NZ_CP028226.1|WP_063724762.1|2336619_2337555_+|primosomal-protein-DnaI
MENISETLRTLMNRKNLNHRYEALMTAVYQDPDVRQFLAAHQNELSSDALERSAAKLYEFCEEKRKIARHEPTQAPGYQPTLVMSNHLIDIAYQPTPQMQEQQAAHALQQRVRSISMPKNIQSADLKTYDQDGDRATALMAALDFIDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANALAAKGFNTTLIHFPSFAVEMKRSISNNTSADKVDAIKRAPILMIDDIGADASSTWIRDDVLGVILEYRMQEELPTCFSSNFSMQELQDGYLTLSQKGDEEPVKAQRIMQRVRYLASEIEMVGRNRRLNPDA
>NZ_CP028226.1|WP_152706990.1|2335212_2336616_+|helicase-DnaB
MPNDEPLTPKTGLVVPQAPALSAAQQAVLAELYLPLMGPLAYSLYAALRSLQSSENELSNRRSHAELLGILNVDLPTVLAARRKLEATGLLRSYYQQDELGAMYIYQLQAPLLALQFFADDLLSVLLLDTVGELRYQQLAGDFAAQPIDLTAAKDVTANILDVFHVDSQKVTTPPLSVQKVRAQLAANEPAEDHSPVLSDDDFDWQLLGQILKQNYVDLKQVASSRQLIITESRVYGISEIEMAKLISEVASLTTGQFDENQLKLLIARRYERPAVSSQQVATEATVATTTTKDNKASAQLSTAEQQLVTYAKQTAPYDFLSALKQEKHGFVTSGENRLVHDLIGRGVLPNAVINMVIYYLLQNRELAALNRNLLETVANDWQQHGITTPEAALMYLKQRKQPKSTPTRRKNNRPTRKEIMPKWAQQQQQTESGKQPARTGKQITAAQRKQLADRLAKLETNSEKED
>NZ_CP028226.1|WP_160246161.1|2349379_2352127_+|CRISPR-associated-helicase-Cas3'
MTEFSRLAQSLWAKKRSDDGQRLWLPLIVHLKDCENTINWLFNHWLSEGQRQQLSEVTSEEDIQRLVKFLGFTHDIGKATPAFQTKPAYNGDHQLDQLLIEQLMQNGFRDLASLNLSSARESPHAIAGEAILESFGVNPTVGAIIGGHHGQTASASPKRQIKDYTANYYQNDNQPDLQMAWQQVQRELVAYGLHTAGYQTTADIPTLNQPEAVILTGLLIMADWLASSEYLNENPDKPLFPLVTTMQSATDINLQARFRDAITTWQSDDEWVPAPLDRNRDPYQVRFGFHARPVQAAITNALEATTDPGMAIVEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLERVADEQSARLSIKLMHGKAQFNQMYKRLPNASNVNSTDEHDGAVTVNSWFGGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNKYLLRAIEWLGAYHVPVVVLSATLPKIKRNQLLKAYIKGKYGRRYHQILKVAPTGWEDTQAYPLLSMLDGPDIKQLTNFEGQSDQAALTLEVQRNNQDDQELIMRLLKQLREGGIAGIIVNTVKRAQDLAALIPADVPLMVLHSAFLAPDRAQQEMKLQAAIGKHGERPAKLVVIGTQVLEQSLDIDFDVLYTDIAPMDLILQRAGRLHRHQMIKRPRRFQRPQLNIMGIKGFGDYGDGNEAVYGKYLLMKTDHFLKNQIKLPDDISTLVQQVYDLATDIQVPGIKAAAEEFSTKLKAEQQKAQVFQICEPQLKHGQSIHGWLDREHRDIATDQQASAAVRDIQETLEVILIQHMNHDDFLLDGRRLDEVAPAEIAQQTLRLPVAVTPNITKAINQLEDLTRPYHARWQDDIWLRGVLVLPLDQKLTAEFSKWRLSYSSQLGLSYSKEE
>NZ_CP028226.1|WP_152706985.1|2352123_2353863_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKTVRMQTFNLTTDPWIVVIDARTNQAVTVSLIELFQNAQYYRRLAGDMRAQDLAILRLLLAILTTIYTRYGADNQAYEWLTMNDMFEVEHVDEDYGIDEIHDDLKQTWADLFASGHFSTIVTDYLQCHAGQFDLFGDQPFYQVTASAYDEFVPEAKSVARSKRTGKPTGQVAVRQMNRRISESGNSVALFAPKVDETKNELTLAELVRWLIMYQNYTGVTDKTKINSDEKFSNGAGWLYRLNPVYASGRSLFEILMLNLVLVPTVSDEQYIVQQPVWEYATLTAYLQERQRQQVPDNLAALYTTWSRLLHLEWDDHQRPTIYSAGIPMFDTEDALIEPMTLWRQDKKTSRFRPAVNGIKYMGKAMWRNFGQYVNVNRSDDIYEAGIVAWLHYLKTEGLVADDRQLWLASTALISDGNMSSQMPATEVYDDMQIQADVLFDEATADHWPVRIEEVIELTQRIGDGYYHFAATVGQIRNIDAKQFAQRHSAQFYASLNRPFKDWLASLTGNDDRDAKIKEWRQTLQQLTLQASSVMMATSSSRDVRGIVERDKNNVPRQVNIFTANDQFRRLVFTQLSGR
>NZ_CP028226.1|WP_152706984.1|2353876_2354482_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MESKIQSATISIIRQLYNNGNLNKGVLASVRHATALTSPQAQTLWPVMMAHLEPNMLSQDGQPTKAEVAVYTAIRFYAIQQQGTESLVYGPANPHADVKDQGMPLFRALARLRRNEETRVALDRRMQPLLATTNVASIINALTHLVSMLKANDQLQKIDYPRLAQDLYWFQQDYEHASQVRLQWGQQYYRPLTVTTEGKKN
>NZ_CP028226.1|WP_057717616.1|2354481_2355561_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MMTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVTRARVSSQSWKRAVRQSFKDDTVTVGFRTKAAAQLLKQALQKLTPELNDDDAWKQVNAVFKLASVKLDKDEETSALLLVSPGQIDQLAQYVTDNADEELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVDAAAQVAHAISTHEVVPEFDYFTALDDLQPEDSTGAAMLGTLEFNSATLYRYANVNINELIANLGETAAIDGIREFVKAFVLSMPTGKQNTFANKTLPNYVMVTLRPDTPVNLVSGFEDPVASKTGYVKQSVQQLATAYQAALSFVEQPILNVDLGADESQVATPADSLTGLLEQLVAKLTEVVKDEDGND
>NZ_CP028226.1|WP_160246162.1|2355541_2356249_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIKLTAPLQSYGNEANFDRRTSYDYPSKSAIIGMVAAALGYSRRDPRIKTLNQLAYAVRIDQPAKPLTDFQIVEWKRNRRKLTYRDYLQDAVFMVALGSEDGGFIDQIDWAIRHPHFQLALGRRANVPAGPMMTAIRSGRNPVQVLQAASWQASQFYMRQIRHHTFVAELIADAVLLPDYPSSMVKDAVVSFDQRHRQYGFRAVAVDRVSLENPYFATKDADTEHDIMNYL
>NZ_CP028226.1|WP_152706982.1|2356262_2356934_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDTNNRRKIKDLSHLGAYHNWVEQSFPDEINSGQRQRHLWRIDRLNGKSYLLLLSATRPAPKEFERYGVAGTAVTKSYDAWLDQLKVGMVMRFRLTANPTHSIVDPNHPKGRVVPHVTIEQQKQWLADRAIRAGFELVDHRETTSDKIHEFAFDVVSHDWPMLHRAKGHGVRLSRVTFEGLLCVKDLPTFKQTLTRGIGREKAFGMGLMTVIPEVQ
>NZ_CP028226.1|WP_160246163.1|2357543_2358857_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLIYRHRHKDDIEFKQLTPEAQPFITIMIPAHNEEVMIEHTINYLMNNLNYEKYEVLVTDDGSTDETPAILERLQSVYDNLRVVTIKKNQGKAHAFNVGVGFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRHDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVATHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>NZ_CP028226.1|WP_057717620.1|2358860_2359343_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKLWQTLVAIITWICVAVPVYWTISSTLLANNPQFIHAWKYEEGKTLFYFFDRFFIIAFILIAIVVIVSTIHNNHRVKQHISKERQYDEDQLDIRKRQLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHRLYED
>NZ_CP028226.1|WP_063724767.1|2360031_2360562_+|YqeG-family-HAD-IIIA-type-phosphatase
MIKQFKPTWMIPAIYNVTPAQLRAQGIKAVFTDLDNTLIAWNNPDGTPELKKWLHALQDAGIPLVVVSNNSEARIAKALQSLELPFVSRSLKPLPLGISKARHDLGLHKNEVVMVGDQYITDMWAAHLAGVPSILVQPIVKTDAWNTRINRFFERFIKLRLAHVYPEMHFQEDLNK
>NZ_CP028226.1|WP_063724768.1|2360558_2361695_+|ribosome-biogenesis-GTPase-YqeH
MSETSEETLYCIGCGAAIQTTDPKAAGYTPNSALQKSLASDAQDLYCQRCFRLRHYNEIVPVGLTDDDFRHLLATIRDANALVVYVVDIFDLNGSIIPGLQRFVGDNPVLLVGNKEDVLPRQLRRTKLREWMNQQVRAQGIKPVDVALTSAKKGHSIDELLAMIEKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLDDGHMMVDTPGIIHPEQMAHVLSGDDLKLVSPQREIRPKGFQLGNGQTLFLGGVARLDIVDTLKATGTVYVDNNLTLHRTRTENADNFYTKHVGELITPPTGDAVADFPLLVRHEFKVTEISDIVFEGLGWVTVAADTRVAAWAPKGVAVLTRPAMINKR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP028226_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028226_3

2357132-2357467

TypeI-E

Consensus_repeat	Method
GGATCACCCCCGCATACATGGGGAACAC	PILER-CR
GTGTTCCCCATGTATGCGGGGGTGATCC	CRISPRCasFinder
GTGTTCCCCATGTATGCGGGGGTGATCC	CRT

5 spacers

cas6e,cas5,cas7,cse2gr11,cas8e,cas3,cas1

The CRISPR arrays of NZ_CP028226_3

>merge|NZ_CP028226|3|2357132-2357467|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCATGTATGCGGGGGTGATCCTGACTGACATTGCGAAGTTGAGTGATCGCGATGGGTGTTCCCCATGTATGCGGGGGTGATCCTGAGCCTACTGCTGCTAAAGATGCAGTCGCTGCGTGTTCCCCATGTATGCGGGGGTGATCCACGTGAATTTTGCCATTACATTTCATCCTCTCCAGTGTTCCCCATGTATGCGGGGGTGATCCTACGCTTAAAACTCAAGTTTTCAAGTATGTTTAGGTGTTCCCCATGTATGCGGGGGTGATCCCGACTGTTCCAGCCTTGCCCGTGAAGCTAAGCGGTGTTCCCCGTGTATGCGGGGGTGTGAT

>NZ_CP028226|3|3|2357132-2357406|PILER-CR
GTGTTCCCCATGTATGCGGGGGTGATCC	TGACTGACATTGCGAAGTTGAGTGATCGCGATGG
GTGTTCCCCATGTATGCGGGGGTGATCC	TGAGCCTACTGCTGCTAAAGATGCAGTCGCTGC
GTGTTCCCCATGTATGCGGGGGTGATCC	ACGTGAATTTTGCCATTACATTTCATCCTCTCCA
GTGTTCCCCATGTATGCGGGGGTGATCC	TACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG
GTGTTCCCCATGTATGCGGGGGTGATCC

>NZ_CP028226|3|3|2357132-2357467|CRISPRCasFinder
GTGTTCCCCATGTATGCGGGGGTGATCC	TGACTGACATTGCGAAGTTGAGTGATCGCGATGG
GTGTTCCCCATGTATGCGGGGGTGATCC	TGAGCCTACTGCTGCTAAAGATGCAGTCGCTGC
GTGTTCCCCATGTATGCGGGGGTGATCC	ACGTGAATTTTGCCATTACATTTCATCCTCTCCA
GTGTTCCCCATGTATGCGGGGGTGATCC	TACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG
GTGTTCCCCATGTATGCGGGGGTGATCC	CGACTGTTCCAGCCTTGCCCGTGAAGCTAAGCG
GTGTTCCCCGTGTATGCGGGGGTGTGAT

>NZ_CP028226|3|3|2357132-2357467|CRT
GTGTTCCCCATGTATGCGGGGGTGATCC	TGACTGACATTGCGAAGTTGAGTGATCGCGATGG
GTGTTCCCCATGTATGCGGGGGTGATCC	TGAGCCTACTGCTGCTAAAGATGCAGTCGCTGC
GTGTTCCCCATGTATGCGGGGGTGATCC	ACGTGAATTTTGCCATTACATTTCATCCTCTCCA
GTGTTCCCCATGTATGCGGGGGTGATCC	TACGCTTAAAACTCAAGTTTTCAAGTATGTTTAG
GTGTTCCCCATGTATGCGGGGGTGATCC	CGACTGTTCCAGCCTTGCCCGTGAAGCTAAGCG
GTGTTCCCCGTGTATGCGGGGGTGTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP028226.1\|WP_003645187.1\|2363346_2363703_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP028226.1\|WP_003640289.1\|2361765_2362080_+\|ribosome-assembly-RNA-binding-protein-YhbY	unknown	unknown	gnl\|CDD\|198171
NZ_CP028226.1\|WP_063724767.1\|2360031_2360562_+\|YqeG-family-HAD-IIIA-type-phosphatase	unknown	unknown	gnl\|CDD\|225090
NZ_CP028226.1\|WP_003645192.1\|2341447_2341759_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_057717620.1\|2358860_2359343_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028226.1\|WP_063731850.1\|2363699_2364434_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP028226.1\|WP_060598912.1\|2364447_2365599_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|237464
NZ_CP028226.1\|WP_060598910.1\|2362711_2363329_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|376478
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP028226.1\|WP_063724768.1\|2360558_2361695_+\|ribosome-biogenesis-GTPase-YqeH	unknown	unknown	gnl\|CDD\|237511
NZ_CP028226.1\|WP_003640290.1\|2362092_2362728_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|236882

Protein	Function_ID	Function_description	E-value
NZ_CP028226.1\|WP_160246161.1\|2349379_2352127_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.02605e-83
NZ_CP028226.1\|WP_003645187.1\|2363346_2363703_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	1.15467e-48
NZ_CP028226.1\|WP_152706984.1\|2353876_2354482_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.35673e-28
NZ_CP028226.1\|WP_152706982.1\|2356262_2356934_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.44024e-71
NZ_CP028226.1\|WP_152706985.1\|2352123_2353863_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.05419e-84
NZ_CP028226.1\|WP_003640289.1\|2361765_2362080_+\|ribosome-assembly-RNA-binding-protein-YhbY	gnl\|CDD\|198171	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome.	1.26802e-30
NZ_CP028226.1\|WP_063724767.1\|2360031_2360562_+\|YqeG-family-HAD-IIIA-type-phosphatase	gnl\|CDD\|225090	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only].	5.32184e-67
NZ_CP028226.1\|WP_063731850.1\|2363699_2364434_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.15698e-23
NZ_CP028226.1\|WP_060598912.1\|2364447_2365599_+\|nucleotidyltransferase	gnl\|CDD\|237464	PRK13670, PRK13670, nucleotidyltransferase.	0
NZ_CP028226.1\|WP_060598910.1\|2362711_2363329_+\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	4.44891e-68
NZ_CP028226.1\|WP_152706988.1\|2345011_2345737_+\|amino-acid-racemase	gnl\|CDD\|376478	pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, maleate isomerases EC:5.2.1.1, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase EC:4.1.1.76.	6.30373e-58
NZ_CP028226.1\|WP_152706987.1\|2346559_2347510_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.44455e-131
NZ_CP028226.1\|WP_063724768.1\|2360558_2361695_+\|ribosome-biogenesis-GTPase-YqeH	gnl\|CDD\|237511	PRK13796, PRK13796, GTPase YqeH; Provisional.	0
NZ_CP028226.1\|WP_003640290.1\|2362092_2362728_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	6.09654e-91
NZ_CP028226.1\|WP_057717616.1\|2354481_2355561_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.15429e-151
NZ_CP028226.1\|WP_160246162.1\|2355541_2356249_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.50103e-45
NZ_CP028226.1\|WP_152706989.1\|2341930_2343193_-\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	2.37505e-179
NZ_CP028226.1\|WP_160246163.1\|2357543_2358857_-\|glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	5.16147e-102

>NZ_CP028226.1|WP_152706982.1|2356262_2356934_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDTNNRRKIKDLSHLGAYHNWVEQSFPDEINSGQRQRHLWRIDRLNGKSYLLLLSATRPAPKEFERYGVAGTAVTKSYDAWLDQLKVGMVMRFRLTANPTHSIVDPNHPKGRVVPHVTIEQQKQWLADRAIRAGFELVDHRETTSDKIHEFAFDVVSHDWPMLHRAKGHGVRLSRVTFEGLLCVKDLPTFKQTLTRGIGREKAFGMGLMTVIPEVQ
>NZ_CP028226.1|WP_160246162.1|2355541_2356249_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTVTIKLTAPLQSYGNEANFDRRTSYDYPSKSAIIGMVAAALGYSRRDPRIKTLNQLAYAVRIDQPAKPLTDFQIVEWKRNRRKLTYRDYLQDAVFMVALGSEDGGFIDQIDWAIRHPHFQLALGRRANVPAGPMMTAIRSGRNPVQVLQAASWQASQFYMRQIRHHTFVAELIADAVLLPDYPSSMVKDAVVSFDQRHRQYGFRAVAVDRVSLENPYFATKDADTEHDIMNYL
>NZ_CP028226.1|WP_057717616.1|2354481_2355561_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MMTNNLYLDIHVIQTVPSSNINRDDTGAPKTALYGGVTRARVSSQSWKRAVRQSFKDDTVTVGFRTKAAAQLLKQALQKLTPELNDDDAWKQVNAVFKLASVKLDKDEETSALLLVSPGQIDQLAQYVTDNADEELDKKAIKAVLKGNQSIDLALFGRMVADNPELNVDAAAQVAHAISTHEVVPEFDYFTALDDLQPEDSTGAAMLGTLEFNSATLYRYANVNINELIANLGETAAIDGIREFVKAFVLSMPTGKQNTFANKTLPNYVMVTLRPDTPVNLVSGFEDPVASKTGYVKQSVQQLATAYQAALSFVEQPILNVDLGADESQVATPADSLTGLLEQLVAKLTEVVKDEDGND
>NZ_CP028226.1|WP_152706984.1|2353876_2354482_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MESKIQSATISIIRQLYNNGNLNKGVLASVRHATALTSPQAQTLWPVMMAHLEPNMLSQDGQPTKAEVAVYTAIRFYAIQQQGTESLVYGPANPHADVKDQGMPLFRALARLRRNEETRVALDRRMQPLLATTNVASIINALTHLVSMLKANDQLQKIDYPRLAQDLYWFQQDYEHASQVRLQWGQQYYRPLTVTTEGKKN
>NZ_CP028226.1|WP_152706985.1|2352123_2353863_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKTVRMQTFNLTTDPWIVVIDARTNQAVTVSLIELFQNAQYYRRLAGDMRAQDLAILRLLLAILTTIYTRYGADNQAYEWLTMNDMFEVEHVDEDYGIDEIHDDLKQTWADLFASGHFSTIVTDYLQCHAGQFDLFGDQPFYQVTASAYDEFVPEAKSVARSKRTGKPTGQVAVRQMNRRISESGNSVALFAPKVDETKNELTLAELVRWLIMYQNYTGVTDKTKINSDEKFSNGAGWLYRLNPVYASGRSLFEILMLNLVLVPTVSDEQYIVQQPVWEYATLTAYLQERQRQQVPDNLAALYTTWSRLLHLEWDDHQRPTIYSAGIPMFDTEDALIEPMTLWRQDKKTSRFRPAVNGIKYMGKAMWRNFGQYVNVNRSDDIYEAGIVAWLHYLKTEGLVADDRQLWLASTALISDGNMSSQMPATEVYDDMQIQADVLFDEATADHWPVRIEEVIELTQRIGDGYYHFAATVGQIRNIDAKQFAQRHSAQFYASLNRPFKDWLASLTGNDDRDAKIKEWRQTLQQLTLQASSVMMATSSSRDVRGIVERDKNNVPRQVNIFTANDQFRRLVFTQLSGR
>NZ_CP028226.1|WP_160246161.1|2349379_2352127_+|CRISPR-associated-helicase-Cas3'
MTEFSRLAQSLWAKKRSDDGQRLWLPLIVHLKDCENTINWLFNHWLSEGQRQQLSEVTSEEDIQRLVKFLGFTHDIGKATPAFQTKPAYNGDHQLDQLLIEQLMQNGFRDLASLNLSSARESPHAIAGEAILESFGVNPTVGAIIGGHHGQTASASPKRQIKDYTANYYQNDNQPDLQMAWQQVQRELVAYGLHTAGYQTTADIPTLNQPEAVILTGLLIMADWLASSEYLNENPDKPLFPLVTTMQSATDINLQARFRDAITTWQSDDEWVPAPLDRNRDPYQVRFGFHARPVQAAITNALEATTDPGMAIVEAPMGLGKTEIALIAVEQLARMTGRDGVYMGLPTQATTNAMFARVNDWLERVADEQSARLSIKLMHGKAQFNQMYKRLPNASNVNSTDEHDGAVTVNSWFGGKKSILTKFTVGTIDNLLLMGLKQKHLFLRHLGFSGKVVVIDEVHAYDAYMNKYLLRAIEWLGAYHVPVVVLSATLPKIKRNQLLKAYIKGKYGRRYHQILKVAPTGWEDTQAYPLLSMLDGPDIKQLTNFEGQSDQAALTLEVQRNNQDDQELIMRLLKQLREGGIAGIIVNTVKRAQDLAALIPADVPLMVLHSAFLAPDRAQQEMKLQAAIGKHGERPAKLVVIGTQVLEQSLDIDFDVLYTDIAPMDLILQRAGRLHRHQMIKRPRRFQRPQLNIMGIKGFGDYGDGNEAVYGKYLLMKTDHFLKNQIKLPDDISTLVQQVYDLATDIQVPGIKAAAEEFSTKLKAEQQKAQVFQICEPQLKHGQSIHGWLDREHRDIATDQQASAAVRDIQETLEVILIQHMNHDDFLLDGRRLDEVAPAEIAQQTLRLPVAVTPNITKAINQLEDLTRPYHARWQDDIWLRGVLVLPLDQKLTAEFSKWRLSYSSQLGLSYSKEE
>NZ_CP028226.1|WP_152706987.1|2346559_2347510_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MEKFGAKKPELSELSRIHDRLTFLYLEHAKLDRQDSAIRVSDARGVVFVPAAIISVLMLGPGVDVTHRAMELMGDAGMAVVWVGERGVRQYAHGRALNHSSRLLEAQARLFSNQRSRLAVARKMYQMRFPNDDVTTLSMQKLRGKEGARVRQVYRLESERTGVSWTRREYNPDNFEASSPINQALTAAHQALYGLSYSVIMAMGASAGLGFVHTGHDLSFVYDFADLYKAETSIPVAFDIVAASTADEDIARSTRLAMRDAFVDGKLLRRMVSDLKAILGVSETTTEVSNLSLWDDRLGLQEFGVQYHETEVGGIE
>NZ_CP028226.1|WP_152706988.1|2345011_2345737_+|amino-acid-racemase
MENCFGIIGGMGTMATEDFVHTVNRLTVTHRDQDYLNYVVLNDAQIPDRTAYILDHNCTNPLPSLKADVQLLDRLGVKFIVMTCNTAHYFMPGLTAITNVPILNMPALAVEAACQLQQSRPLRIGVLATTGTLKSQLYQQLILAKGHIPVVPTEQQQAQVMALIYEDIKQHDYVNRVKFHGLIDQLLNAANCDAAILGCTELSVAQDTAPYGSERIIDAQHELARVTVQCAQAAKTTMILR
>NZ_CP028226.1|WP_152706989.1|2341930_2343193_-|AAA-family-ATPase
MAFKTPLADQMRPQSLEQMVGQQDLLKAGQPLRQIIDQHVNIPLILWGPPGTGKTSLAQIIASQDDYPFVAFNASTENKAQLTKVIAQYPEQSFVLLIDEIHRMTKTLQDFLLPYLENGHVMLIGSTTENPIMSIVPAIRSRCQIFEFQPLSDTDIEIALRRAVTDIYNLTDDQVDAKALNLIAISAEGDLRIALNILETLHAIDQKQITVAAVQHFAQQQHFSYDRKATKHYDYLSAYSDSMAGSDTDAALYYLTILLKNDDLPSVVRRLREIPYTYIGLANPEQVTQIVVAANQAEKIGMPKAKYPLMFATMLMCISPKSGSFDQSWEKLDQDTQNPSQHPMPRGLRDMHYKHSEEITGGGLIDNPFQMPHQIAQQNYMPKGLAGRRYYYPKDNENERKLGAQYLKLHRFIYNEDYHE
>NZ_CP028226.1|WP_003645192.1|2341447_2341759_+|hypothetical-protein
MATVLPKAVKVWMGANILQIEFDNGEFRYMRTHFIDDYVSAWSPKKGKGKRRNLWLMPSWEWLGANARIESDGTVVLFEKDVYTAQELWHNSVTRIDLVSGVH
>NZ_CP028226.1|WP_160246163.1|2357543_2358857_-|glycosyltransferase
MEIMQTLKPFESIWNFVLLLLVSYPILGAFAWFIGVLCYQLIYRHRHKDDIEFKQLTPEAQPFITIMIPAHNEEVMIEHTINYLMNNLNYEKYEVLVTDDGSTDETPAILERLQSVYDNLRVVTIKKNQGKAHAFNVGVGFARGEFILSNDADSIPEPDALWKYMSYFMGEEHANTAAVTANMDVQNRSTIIAKSQTVEFSSIVGVIKRSQVSALGNMYAYSGANTMYRHDALIDVGLFRQDRATEDISIAWDHQLNGWTTVFSPDILFYMNVPENLDALYHQRKRWAKGGTEVLLTNFKRVATHPGKYLKQWAFITDQTLSIIWSLFFFVSTLIFLISLVTFFFTGNYERVYHMFCMAFIFVTFEMFAGVLQLLSALIVDDRGRKFKYLIFMPLYMLIYWQVNALALVTTLIPAVKTILGYGSGTWVSPVRKHHTE
>NZ_CP028226.1|WP_057717620.1|2358860_2359343_-|hypothetical-protein
MEKKDVMKQYVTDKYFSKGHWWTKLWQTLVAIITWICVAVPVYWTISSTLLANNPQFIHAWKYEEGKTLFYFFDRFFIIAFILIAIVVIVSTIHNNHRVKQHISKERQYDEDQLDIRKRQLNNFYTQRFGQATFRQHVKHYTVDPEQNLDVNEIHRLYED
>NZ_CP028226.1|WP_063724767.1|2360031_2360562_+|YqeG-family-HAD-IIIA-type-phosphatase
MIKQFKPTWMIPAIYNVTPAQLRAQGIKAVFTDLDNTLIAWNNPDGTPELKKWLHALQDAGIPLVVVSNNSEARIAKALQSLELPFVSRSLKPLPLGISKARHDLGLHKNEVVMVGDQYITDMWAAHLAGVPSILVQPIVKTDAWNTRINRFFERFIKLRLAHVYPEMHFQEDLNK
>NZ_CP028226.1|WP_063724768.1|2360558_2361695_+|ribosome-biogenesis-GTPase-YqeH
MSETSEETLYCIGCGAAIQTTDPKAAGYTPNSALQKSLASDAQDLYCQRCFRLRHYNEIVPVGLTDDDFRHLLATIRDANALVVYVVDIFDLNGSIIPGLQRFVGDNPVLLVGNKEDVLPRQLRRTKLREWMNQQVRAQGIKPVDVALTSAKKGHSIDELLAMIEKYRRGRDVYVVGVTNVGKSTLINRIIANNTGLKDLITTSRFPGTTLDKIEIPLDDGHMMVDTPGIIHPEQMAHVLSGDDLKLVSPQREIRPKGFQLGNGQTLFLGGVARLDIVDTLKATGTVYVDNNLTLHRTRTENADNFYTKHVGELITPPTGDAVADFPLLVRHEFKVTEISDIVFEGLGWVTVAADTRVAAWAPKGVAVLTRPAMINKR
>NZ_CP028226.1|WP_003640289.1|2361765_2362080_+|ribosome-assembly-RNA-binding-protein-YhbY
MENLRGKQKHYLRGEAHHMRPLFAVGKNGLTDEWLTQLTGALDKRELIKVNILQNADVTTAEVKAAIEQKTAITVVQTIGRVLVLYLPASHEEDQHYSLEVAKL
>NZ_CP028226.1|WP_003640290.1|2362092_2362728_+|nicotinate-nucleotide-adenylyltransferase
MQTVNQTATKVLTETVTAIPHRRVGILGGTFNPPHLGHLIMAQQVGDQLGLDEVRFMPDAQPPHVDEKKTIAVEDRANMVQEAIVDNPLFRLETAEIERGGKSYTYETMKFLKAKHPDTQYYFIIGGDMVDYLHTWYHIDELVKLVTFVGIKRTGYPTTSQYPVIWVDAPLIDISSTQIRQKISHGHSVRYLVPEAVAAYIKEHHLYEQND
>NZ_CP028226.1|WP_060598910.1|2362711_2363329_+|HD-domain-containing-protein
MSKTIEYTEGIVPYRHEELMAKVAAQLTDKRYQHCLRVEDTARQLAADNGVDIELAGIAGLLHDYAKQRDDQTFIQLIKTRGMDPDLVSYGNGVWHGYVGAELIKDELHIYNEPILNAVRLHTVGAPYMTKLDQIIFMADFIEPARDFPGVEAAREATAKSLADGVRFQIQHTLDYLIQKGAPVYPQTLATYNAWVGGVDPQFAN
>NZ_CP028226.1|WP_003645187.1|2363346_2363703_+|ribosome-silencing-factor
MDSKELLQLTVEAADDKRADDIVALDVAEVSLMADYFVILSADSKRQVQAIADNIVDFVRKAGSDVKSVEGRTAGEWVLIDAGDVIVHVFQKDARAHYNLEKLWSDAPIVDVAQWVNA
>NZ_CP028226.1|WP_063731850.1|2363699_2364434_+|class-I-SAM-dependent-methyltransferase
MIYQTFAELYDELFDPAMYQQWLDFVRREYPNQDGQLLELACGTGRLGVLLAQAGYQVTGLDLSENMLALAQRHAGEAAVTLPLLQGDMLDLSEIGTFDAVTCFADSFCYLPDITTVQHAFEQVAQHLTADGEFLFDVITPYQTDEVYPGYMYNYRDEDRAFMWTSYAGEQPHSAEHDLTFFIYNDEKQAFDEVSELHQEQTYVLADYQQALQAAGFNHVTVSADFGRQQPDDQTTRWFFKCRK
>NZ_CP028226.1|WP_060598912.1|2364447_2365599_+|nucleotidyltransferase
MQAVGLITEYNPLHNGHRYHLQQAQQLTNADCVVVVMSGNWLQRGEPAILDKWTRAKLALENGADLVIELPVFFATQPAHLFARGGIELLSALDCTSVVFGAEHPELDFQRLTTAIAAQQGDFTHYNATFATQFNAALQAATGVTLTAANDMLSFCYYAANQALAHPMQLLPIKRRQADHATTTIAANSRYASGTAVRQAALAQDWAALKPVVPADTFTALTTQRLQRWRDFWPFLQYQLLTVDVARSGQYDQMAEGLEYRMQAMAQHATTFDDFIHQVKSKRYTYTRLQRVATAALLQLNQIEIQNAQAHNYLRVLGFTPKGQAYLHQVKKQLPLPLYTKINQDLRQHALNLDYRAGRVYQLINGQSQDLYRRPWRLPATIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP028226_2	2.5\|2348769\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348769-2348801	33	NC_004305	Lactobacillus phage phig1e, complete genome	36908-36940	1	0.97
NZ_CP028226_2	2.5\|2348769\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348769-2348801	33	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	36908-36940	1	0.97
NZ_CP028226_2	2.8\|2348769\|32\|NZ_CP028226\|PILER-CR	2348769-2348800	32	NC_004305	Lactobacillus phage phig1e, complete genome	36909-36940	1	0.969
NZ_CP028226_2	2.8\|2348769\|32\|NZ_CP028226\|PILER-CR	2348769-2348800	32	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	36909-36940	1	0.969
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MG765277	Lactobacillus phage Bacchae, complete genome	133909-133941	2	0.939
NZ_CP028226_1	1.7\|2343762\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343762-2343794	33	NC_047897	Lactobacillus phage Lenus, complete genome	6540-6572	2	0.939
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MG765277	Lactobacillus phage Bacchae, complete genome	133909-133941	2	0.939
NZ_CP028226_1	1.17\|2343763\|33\|NZ_CP028226\|PILER-CR	2343763-2343795	33	NC_047897	Lactobacillus phage Lenus, complete genome	6540-6572	2	0.939
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NC_006936	Lactobacillus phage phiJL-1, complete genome	36555-36587	3	0.909
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36555-36587	3	0.909
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	26031-26063	3	0.909
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NC_019489	Lactobacillus phage Sha1, complete genome	4039-4071	3	0.909
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MG557979	Lactobacillus phage Lpa804, complete genome	103790-103822	3	0.909
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NC_006936	Lactobacillus phage phiJL-1, complete genome	36555-36587	3	0.909
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	AY236756	Lactobacillus plantarum bacteriophage phiJL-1, complete genome	36555-36587	3	0.909
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	26031-26063	3	0.909
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NC_019489	Lactobacillus phage Sha1, complete genome	4039-4071	3	0.909
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MG557979	Lactobacillus phage Lpa804, complete genome	103790-103822	3	0.909
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	NC_004305	Lactobacillus phage phig1e, complete genome	30158-30190	3	0.909
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	30158-30190	3	0.909
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MH809530	Lactobacillus phage Dionysus, complete genome	133722-133754	4	0.879
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NC_048084	Lactobacillus phage Iacchus, complete genome	130351-130383	4	0.879
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MH809531	Lactobacillus phage Bromius, complete genome	133592-133624	4	0.879
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MH809530	Lactobacillus phage Dionysus, complete genome	133722-133754	4	0.879
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NC_048084	Lactobacillus phage Iacchus, complete genome	130351-130383	4	0.879
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MH809531	Lactobacillus phage Bromius, complete genome	133592-133624	4	0.879
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	JN700520	Staphylococcus phage StB12, complete genome	44655-44687	4	0.879
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NC_047897	Lactobacillus phage Lenus, complete genome	37353-37385	5	0.848
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	53932-53964	5	0.848
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NC_006565	Lactobacillus phage LP65, complete genome	53932-53964	5	0.848
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NC_047897	Lactobacillus phage Lenus, complete genome	37353-37385	5	0.848
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	53932-53964	5	0.848
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NC_006565	Lactobacillus phage LP65, complete genome	53932-53964	5	0.848
NZ_CP028226_2	2.7\|2348708\|32\|NZ_CP028226\|PILER-CR	2348708-2348739	32	NC_004305	Lactobacillus phage phig1e, complete genome	27501-27532	5	0.844
NZ_CP028226_2	2.7\|2348708\|32\|NZ_CP028226\|PILER-CR	2348708-2348739	32	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	27501-27532	5	0.844
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MG744354	Lactobacillus phage Satyr, complete genome	74847-74879	6	0.818
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	JX486088	Lactobacillus phage ATCC 8014-B2, complete genome	42482-42514	6	0.818
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	MG765274	Lactobacillus phage Maenad, complete genome	72772-72804	6	0.818
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MG744354	Lactobacillus phage Satyr, complete genome	74847-74879	6	0.818
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	JX486088	Lactobacillus phage ATCC 8014-B2, complete genome	42482-42514	6	0.818
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	MG765274	Lactobacillus phage Maenad, complete genome	72772-72804	6	0.818
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	MF417982	Uncultured Caudovirales phage clone 7F_2, partial genome	2658-2690	6	0.818
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	MF417982	Uncultured Caudovirales phage clone 7F_2, partial genome	2659-2691	6	0.818
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	JN700521	Staphylococcus phage StB20, complete genome	40864-40896	6	0.818
NZ_CP028226_2	2.4\|2348708\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348708-2348740	33	NC_004305	Lactobacillus phage phig1e, complete genome	27501-27533	6	0.818
NZ_CP028226_2	2.4\|2348708\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348708-2348740	33	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	27501-27533	6	0.818
NZ_CP028226_3	3.3\|2357283\|34\|NZ_CP028226\|PILER-CR,CRISPRCasFinder,CRT	2357283-2357316	34	NC_004305	Lactobacillus phage phig1e, complete genome	40503-40536	6	0.824
NZ_CP028226_3	3.3\|2357283\|34\|NZ_CP028226\|PILER-CR,CRISPRCasFinder,CRT	2357283-2357316	34	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	40503-40536	6	0.824
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	944208-944240	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1760869-1760901	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	95454-95486	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	22653-22685	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1393643-1393675	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1684598-1684630	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	290557-290589	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	70755-70787	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	944208-944240	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1760869-1760901	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	95454-95486	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	22653-22685	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1393643-1393675	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1684598-1684630	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	290557-290589	7	0.788
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	70755-70787	7	0.788
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	JN700521	Staphylococcus phage StB20, complete genome	40863-40895	7	0.788
NZ_CP028226_1	1.6\|2343701\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343701-2343733	33	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	417956-417988	8	0.758
NZ_CP028226_1	1.10\|2343950\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343950-2343982	33	MN694471	Marine virus AFVG_250M232, complete genome	14019-14051	8	0.758
NZ_CP028226_1	1.16\|2343702\|33\|NZ_CP028226\|PILER-CR	2343702-2343734	33	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	417956-417988	8	0.758
NZ_CP028226_1	1.20\|2343951\|33\|NZ_CP028226\|PILER-CR	2343951-2343983	33	MN694471	Marine virus AFVG_250M232, complete genome	14019-14051	8	0.758
NZ_CP028226_1	1.10\|2343950\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2343950-2343982	33	MF417903	Uncultured Caudovirales phage clone 10F_3, partial genome	24240-24272	9	0.727
NZ_CP028226_1	1.20\|2343951\|33\|NZ_CP028226\|PILER-CR	2343951-2343983	33	MF417903	Uncultured Caudovirales phage clone 10F_3, partial genome	24240-24272	9	0.727
NZ_CP028226_2	2.1\|2348525\|33\|NZ_CP028226\|CRISPRCasFinder,CRT	2348525-2348557	33	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	163363-163395	9	0.727
NZ_CP028226_3	3.4\|2357345\|34\|NZ_CP028226\|PILER-CR,CRISPRCasFinder,CRT	2357345-2357378	34	NZ_CP015884	Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence	86970-87003	9	0.735
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	JB137888	Sequence 7 from Patent WO2012159774	38070-38101	10	0.688
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	MN114083	Listeria phage LP-013, complete genome	10064-10095	10	0.688
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	NC_021787	Listeria phage LP-037, complete genome	32457-32488	10	0.688
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	MN904502	Listeria phage LP-018, complete genome	10064-10095	10	0.688
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	KJ094021	Listeria phage LP-114, complete genome	65575-65606	10	0.688
NZ_CP028226_2	2.6\|2348647\|32\|NZ_CP028226\|PILER-CR	2348647-2348678	32	MN114082	Listeria phage LP-010, complete genome	10064-10095	10	0.688

1. spacer 2.5|2348769|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 1, identity: 0.97

cagctagcgaattggttggataatggcggttgg	CRISPR spacer
cagctagcgaactggttggataatggcggttgg	Protospacer
***********.*********************

2. spacer 2.5|2348769|33|NZ_CP028226|CRISPRCasFinder,CRT matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 1, identity: 0.97

cagctagcgaattggttggataatggcggttgg	CRISPR spacer
cagctagcgaactggttggataatggcggttgg	Protospacer
***********.*********************

3. spacer 2.8|2348769|32|NZ_CP028226|PILER-CR matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 1, identity: 0.969

cagctagcgaattggttggataatggcggttg	CRISPR spacer
cagctagcgaactggttggataatggcggttg	Protospacer
***********.********************

4. spacer 2.8|2348769|32|NZ_CP028226|PILER-CR matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 1, identity: 0.969

cagctagcgaattggttggataatggcggttg	CRISPR spacer
cagctagcgaactggttggataatggcggttg	Protospacer
***********.********************

5. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MG765277 (Lactobacillus phage Bacchae, complete genome) position: , mismatch: 2, identity: 0.939

-cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
gcgtcta-ctattccgccacaagcacacgttaga	Protospacer
 ****** *************************.

6. spacer 1.7|2343762|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 2, identity: 0.939

atggaagcgatgagatgagagaaaaataccata	CRISPR spacer
atggaagtaatgagatgagagaaaaataccata	Protospacer
*******..************************

7. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MG765277 (Lactobacillus phage Bacchae, complete genome) position: , mismatch: 2, identity: 0.939

-cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
gcgtcta-ctattccgccacaagcacacgttaga	Protospacer
 ****** *************************.

8. spacer 1.17|2343763|33|NZ_CP028226|PILER-CR matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 2, identity: 0.939

atggaagcgatgagatgagagaaaaataccata	CRISPR spacer
atggaagtaatgagatgagagaaaaataccata	Protospacer
*******..************************

9. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccaccacaagcacacgttata	Protospacer
**************.**************** .

10. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccaccacaagcacacgttata	Protospacer
**************.**************** .

11. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacgtgttagc	Protospacer
*************************..*****

12. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacgtgttagc	Protospacer
*************************..*****

13. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MG557979 (Lactobacillus phage Lpa804, complete genome) position: , mismatch: 3, identity: 0.909

-cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
gcgtata-ctattccgccacaagcacacgttaga	Protospacer
 *** ** *************************.

14. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NC_006936 (Lactobacillus phage phiJL-1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccaccacaagcacacgttata	Protospacer
**************.**************** .

15. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to AY236756 (Lactobacillus plantarum bacteriophage phiJL-1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccaccacaagcacacgttata	Protospacer
**************.**************** .

16. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacgtgttagc	Protospacer
*************************..*****

17. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NC_019489 (Lactobacillus phage Sha1, complete genome) position: , mismatch: 3, identity: 0.909

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacgtgttagc	Protospacer
*************************..*****

18. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MG557979 (Lactobacillus phage Lpa804, complete genome) position: , mismatch: 3, identity: 0.909

-cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
gcgtata-ctattccgccacaagcacacgttaga	Protospacer
 *** ** *************************.

19. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 3, identity: 0.909

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
attctaaaccagtcgaaatcgacgggtttaaaa	Protospacer
 **.**************************.**

20. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 3, identity: 0.909

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
attctaaaccagtcgaaatcgacgggtttaaaa	Protospacer
 **.**************************.**

21. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MH809530 (Lactobacillus phage Dionysus, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

22. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_048084 (Lactobacillus phage Iacchus, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

23. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MH809531 (Lactobacillus phage Bromius, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

24. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MH809530 (Lactobacillus phage Dionysus, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

25. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NC_048084 (Lactobacillus phage Iacchus, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

26. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MH809531 (Lactobacillus phage Bromius, complete genome) position: , mismatch: 4, identity: 0.879

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
tgtctacctattccatcacaagcacacgttaga	Protospacer
.*************..****************.

27. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 4, identity: 0.879

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
gtataaaaccagtcgaattcgacgggtttagaa	Protospacer
 * * ************ ***************

28. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacacaatgtc	Protospacer
***************************. *.

29. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtatacctattccgccacaagcacacgatgtc	Protospacer
*** ************************ *.

30. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtatacctattccgccacaagcacacgatgtc	Protospacer
*** ************************ *.

31. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NC_047897 (Lactobacillus phage Lenus, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacacaatgtc	Protospacer
***************************. *.

32. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtatacctattccgccacaagcacacgatgtc	Protospacer
*** ************************ *.

33. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 5, identity: 0.848

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtatacctattccgccacaagcacacgatgtc	Protospacer
*** ************************ *.

34. spacer 2.7|2348708|32|NZ_CP028226|PILER-CR matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 5, identity: 0.844

ccaagtcccaatgggctttcgatgttgatgtt	CRISPR spacer
cctaagccgagtgggctttcgatgttgatgtt	Protospacer
** *. ** *.*********************

35. spacer 2.7|2348708|32|NZ_CP028226|PILER-CR matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 5, identity: 0.844

ccaagtcccaatgggctttcgatgttgatgtt	CRISPR spacer
cctaagccgagtgggctttcgatgttgatgtt	Protospacer
** *. ** *.*********************

36. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MG744354 (Lactobacillus phage Satyr, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacttttttac	Protospacer
************************* . ** .

37. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to JX486088 (Lactobacillus phage ATCC 8014-B2, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtttacctattccgccacaagcacaccattac	Protospacer
***.***********************  * .

38. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MG765274 (Lactobacillus phage Maenad, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacttttttac	Protospacer
************************* . ** .

39. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MG744354 (Lactobacillus phage Satyr, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacttttttac	Protospacer
************************* . ** .

40. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to JX486088 (Lactobacillus phage ATCC 8014-B2, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtttacctattccgccacaagcacaccattac	Protospacer
***.***********************  * .

41. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to MG765274 (Lactobacillus phage Maenad, complete genome) position: , mismatch: 6, identity: 0.818

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctacctattccgccacaagcacttttttac	Protospacer
************************* . ** .

42. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MF417982 (Uncultured Caudovirales phage clone 7F_2, partial genome) position: , mismatch: 6, identity: 0.818

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
gtataaaacccgtcgaattcgacgggtttagat	Protospacer
 * * ***** ****** **************

43. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MF417982 (Uncultured Caudovirales phage clone 7F_2, partial genome) position: , mismatch: 6, identity: 0.818

tttttaaaccagtcgaaatcgacgggtttagaa-	CRISPR spacer
-tataaaacccgtcgaattcgacgggtttagatt	Protospacer
 * * ***** ****** **************

44. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to JN700521 (Staphylococcus phage StB20, complete genome) position: , mismatch: 6, identity: 0.818

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
ttatagaacccgtcgaattcgacgggtttagat	Protospacer
** * .**** ****** **************

45. spacer 2.4|2348708|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 6, identity: 0.818

ccaagtcccaatgggctttcgatgttgatgttg	CRISPR spacer
cctaagccgagtgggctttcgatgttgatgtta	Protospacer
** *. ** *.*********************.

46. spacer 2.4|2348708|33|NZ_CP028226|CRISPRCasFinder,CRT matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 6, identity: 0.818

ccaagtcccaatgggctttcgatgttgatgttg	CRISPR spacer
cctaagccgagtgggctttcgatgttgatgtta	Protospacer
** *. ** *.*********************.

47. spacer 3.3|2357283|34|NZ_CP028226|PILER-CR,CRISPRCasFinder,CRT matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 6, identity: 0.824

acgtgaattttgccattacatttcatcctctcca	CRISPR spacer
ccttgcgtatttccattacatttcatcctctcca	Protospacer
 * ** .* ** **********************

48. spacer 3.3|2357283|34|NZ_CP028226|PILER-CR,CRISPRCasFinder,CRT matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 6, identity: 0.824

acgtgaattttgccattacatttcatcctctcca	CRISPR spacer
ccttgcgtatttccattacatttcatcctctcca	Protospacer
 * ** .* ** **********************

49. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

50. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

51. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

52. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

53. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

54. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

55. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

56. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

57. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

58. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

59. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

60. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

61. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

62. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

63. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

64. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.788

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtctg	Protospacer
******** **************.**.  *  *

65. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to JN700521 (Staphylococcus phage StB20, complete genome) position: , mismatch: 7, identity: 0.788

tttttaaaccagtcgaaatcgacgggtttagaa-	CRISPR spacer
-tatagaacccgtcgaattcgacgggtttagatt	Protospacer
 * * .**** ****** **************

66. spacer 1.6|2343701|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.758

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtcta	Protospacer
******** **************.**.  *  .

67. spacer 1.10|2343950|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MN694471 (Marine virus AFVG_250M232, complete genome) position: , mismatch: 8, identity: 0.758

tggtaggtgattaaatggggctaatacagcgta	CRISPR spacer
ttattggttattaaatggggctaatagagcagc	Protospacer
* .* *** ***************** ***.

68. spacer 1.16|2343702|33|NZ_CP028226|PILER-CR matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.758

cgtctacctattccgccacaagcacacgttagg	CRISPR spacer
cgtctaccaattccgccacaagcgcatcgtcta	Protospacer
******** **************.**.  *  .

69. spacer 1.20|2343951|33|NZ_CP028226|PILER-CR matches to MN694471 (Marine virus AFVG_250M232, complete genome) position: , mismatch: 8, identity: 0.758

tggtaggtgattaaatggggctaatacagcgta	CRISPR spacer
ttattggttattaaatggggctaatagagcagc	Protospacer
* .* *** ***************** ***.

70. spacer 1.10|2343950|33|NZ_CP028226|CRISPRCasFinder,CRT matches to MF417903 (Uncultured Caudovirales phage clone 10F_3, partial genome) position: , mismatch: 9, identity: 0.727

tggtaggtgattaaatggggctaatacagcgta	CRISPR spacer
gttgaggtgattaaatggggcgaataaagatca	Protospacer
    ***************** **** **  .*

71. spacer 1.20|2343951|33|NZ_CP028226|PILER-CR matches to MF417903 (Uncultured Caudovirales phage clone 10F_3, partial genome) position: , mismatch: 9, identity: 0.727

tggtaggtgattaaatggggctaatacagcgta	CRISPR spacer
gttgaggtgattaaatggggcgaataaagatca	Protospacer
    ***************** **** **  .*

72. spacer 2.1|2348525|33|NZ_CP028226|CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tttttaaaccagtcgaaatcgacgggtttagaa	CRISPR spacer
taagataacccgtcaaaatcgacgggtttaaac	Protospacer
*     **** ***.***************.*

73. spacer 3.4|2357345|34|NZ_CP028226|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015884 (Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence) position: , mismatch: 9, identity: 0.735

tacgctt----aaaactcaagttttcaagtatgtttag	CRISPR spacer
----ctttgaaaaaattcaagttttcacgtatgttggc	Protospacer
    ***    ****.*********** ******* .

74. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

75. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

76. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

77. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

78. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

79. spacer 2.6|2348647|32|NZ_CP028226|PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 10, identity: 0.688

tacccggcaataactgcactagctgtttcgca	CRISPR spacer
tcaggaataataactccattagctgtttcgcc	Protospacer
*    ...******* **.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105567 : 143011

Lactobacillus_phage(60.0%)

capsid,holin,terminase,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160246055.1\|105567_105945_-\|holin	holin	A0A2K9VCG4	Lactobacillus_phage	1.0e-16	68.8
WP_160246056.1\|105931_106228_-	hypothetical protein	A0A1I9KK55	Lactobacillus_phage	9.9e-39	76.5
WP_160246057.1\|106228_107407_-	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	4.6e-196	87.8
WP_160246058.1\|107418_107982_-	hypothetical protein	A0A2P0ZLH0	Lactobacillus_phage	6.3e-10	93.8
WP_134901158.1\|108577_108727_-	XkdX family protein	U5U4L4	Lactobacillus_phage	3.6e-05	56.8
WP_063491252.1\|108726_109038_-	hypothetical protein	NA	NA	NA	NA
WP_068874376.1\|111209_111485_-	hypothetical protein	NA	NA	NA	NA
WP_151502143.1\|111477_111843_-	hypothetical protein	NA	NA	NA	NA
WP_160246059.1\|111817_113005_-	hypothetical protein	NA	NA	NA	NA
WP_151502145.1\|112997_113909_-\|tail	phage tail family protein	Q9T1A6	Listeria_phage	1.3e-17	29.9
WP_060418026.1\|113981_114254_+	hypothetical protein	NA	NA	NA	NA
WP_160246184.1\|114278_118067_-	tape measure protein	A0A0A7DMV4	Lactobacillus_phage	1.0e-39	58.6
WP_027821927.1\|118291_118549_-	hypothetical protein	NA	NA	NA	NA
WP_061871562.1\|118623_119142_-	hypothetical protein	NA	NA	NA	NA
WP_027821925.1\|119170_119824_-	hypothetical protein	NA	NA	NA	NA
WP_027821924.1\|119872_120268_-	hypothetical protein	NA	NA	NA	NA
WP_160246060.1\|120270_120762_-	hypothetical protein	NA	NA	NA	NA
WP_033608065.1\|120762_121095_-	hypothetical protein	NA	NA	NA	NA
WP_027821922.1\|121091_121460_-	hypothetical protein	NA	NA	NA	NA
WP_160246061.1\|121477_122587_-\|capsid	major capsid protein E	A0A2H4J022	uncultured_Caudovirales_phage	3.1e-61	40.1
WP_105316084.1\|122602_122974_-	hypothetical protein	A0A0K2CNR0	Brevibacillus_phage	1.7e-08	36.1
WP_160246062.1\|122987_123638_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_160246063.1\|123748_124660_-	hypothetical protein	NA	NA	NA	NA
WP_160246064.1\|124659_126396_-\|portal	phage portal protein	A7J292	Streptococcus_phage	6.0e-67	34.6
WP_160246065.1\|126410_127724_-\|terminase	PBSX family phage terminase large subunit	D2IYW1	Enterococcus_phage	1.9e-126	54.3
WP_160246066.1\|127716_128232_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	1.2e-63	86.2
WP_053339019.1\|128290_128611_-	hypothetical protein	A0A1J1J9Q7	Escherichia_phage	9.4e-19	48.1
WP_063208246.1\|128834_129098_-	hypothetical protein	A0A1S5SBT9	Streptococcus_phage	2.3e-23	59.8
WP_160246067.1\|129066_129246_-	hypothetical protein	NA	NA	NA	NA
WP_160246068.1\|129302_130274_-	hypothetical protein	NA	NA	NA	NA
WP_160246069.1\|130270_130975_-	hypothetical protein	NA	NA	NA	NA
WP_128536992.1\|130958_131492_-	hypothetical protein	NA	NA	NA	NA
WP_128468002.1\|131807_132275_-	hypothetical protein	B4XYT9	Lactobacillus_phage	1.4e-15	40.0
WP_064578080.1\|132817_133192_-	hypothetical protein	NA	NA	NA	NA
WP_160246070.1\|133188_133707_-	hypothetical protein	O03915	Lactobacillus_phage	8.3e-41	54.6
WP_160246071.1\|133711_134434_-	oxidoreductase	A0A141E1D3	Streptococcus_phage	7.2e-51	46.4
WP_160246072.1\|134430_134718_-	hypothetical protein	NA	NA	NA	NA
WP_160246073.1\|134714_135623_-	DnaD domain protein	NA	NA	NA	NA
WP_160246074.1\|135702_136575_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	2.1e-73	49.2
WP_160246075.1\|136486_137386_-	recombinase RecT	E9LUM3	Lactobacillus_phage	8.7e-62	48.0
WP_160246076.1\|137382_137769_-	hypothetical protein	NA	NA	NA	NA
WP_160246077.1\|137901_138072_-	hypothetical protein	NA	NA	NA	NA
WP_160246078.1\|138139_138652_-	transcriptional regulator	D6PST4	Lactobacillus_phage	5.5e-29	44.7
WP_158178975.1\|138718_139024_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_160246079.1\|139434_139662_-	hypothetical protein	NA	NA	NA	NA
WP_033608054.1\|139658_139913_-	helix-turn-helix transcriptional regulator	A0A2H4JFN1	uncultured_Caudovirales_phage	1.5e-06	41.3
WP_160246080.1\|140054_140573_+	helix-turn-helix transcriptional regulator	S6C481	Thermus_phage	6.0e-15	34.1
WP_160246081.1\|140587_141010_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_160246185.1\|141134_141833_+	hypothetical protein	NA	NA	NA	NA
WP_160246082.1\|142000_142201_+	hypothetical protein	E9LUS6	Lactobacillus_phage	2.7e-24	95.5
WP_011101078.1\|142506_142683_+	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	1.2e-07	53.4
WP_011101078.1\|142834_143011_+	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	1.2e-07	53.4

DBSCAN-SWA_2

338636 : 347150

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054397750.1\|338636_339215_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-22	34.2
WP_054397752.1\|339207_340233_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	4.9e-61	41.7
WP_054397754.1\|340229_341684_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-50	34.0
WP_054397757.1\|341668_343888_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.8e-146	39.9
WP_072535386.1\|343880_344561_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003642588.1\|344560_344815_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003642587.1\|344816_345548_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.6e-37	37.3
WP_054397759.1\|345550_346681_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_054397761.1\|346664_347150_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.0e-17	41.7

DBSCAN-SWA_3

1410650 : 1469574

Bacillus_virus(25.0%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003643762.1\|1410650_1411214_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_054397358.1\|1411407_1412076_+	ribose 5-phosphate isomerase A	NA	NA	NA	NA
WP_054397361.1\|1412233_1413739_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_003643763.1\|1414003_1414372_+	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_003641932.1\|1414476_1414986_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_057717865.1\|1415016_1416213_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_003641934.1\|1416322_1416793_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_003641935.1\|1416811_1417267_+	hypothetical protein	NA	NA	NA	NA
WP_054397367.1\|1417370_1417943_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_044428959.1\|1418108_1419029_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_160246120.1\|1419165_1420077_+	oxidoreductase	NA	NA	NA	NA
WP_054397370.1\|1420965_1421412_-	ribonuclease H	NA	NA	NA	NA
WP_054397373.1\|1421649_1423176_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_054397376.1\|1423176_1424148_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.7
WP_054397379.1\|1424225_1425557_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003643773.1\|1426022_1427540_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_003643774.1\|1427554_1429384_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
WP_072535133.1\|1429398_1430121_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.4e-30	31.9
WP_054397384.1\|1430703_1434387_+	MucBP domain-containing protein	NA	NA	NA	NA
WP_033608293.1\|1436234_1436627_+	hypothetical protein	NA	NA	NA	NA
WP_054398068.1\|1438310_1438574_+	hypothetical protein	NA	NA	NA	NA
WP_060599143.1\|1438685_1438961_+	hypothetical protein	NA	NA	NA	NA
WP_060599145.1\|1439491_1439764_+	hypothetical protein	NA	NA	NA	NA
WP_072535410.1\|1439966_1440221_+	hypothetical protein	NA	NA	NA	NA
WP_047672638.1\|1441224_1441533_+	hypothetical protein	NA	NA	NA	NA
WP_057717861.1\|1442017_1442560_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_003646451.1\|1442574_1442838_+	hypothetical protein	NA	NA	NA	NA
WP_003643788.1\|1442954_1443158_+	hypothetical protein	NA	NA	NA	NA
WP_072535411.1\|1443246_1443522_+	hypothetical protein	NA	NA	NA	NA
WP_057717860.1\|1443539_1443926_+	hypothetical protein	NA	NA	NA	NA
WP_057717859.1\|1444151_1444307_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_072535412.1\|1444375_1444567_+	hypothetical protein	NA	NA	NA	NA
WP_054398069.1\|1444958_1445159_+	hypothetical protein	NA	NA	NA	NA
WP_053566430.1\|1445416_1445650_+	hypothetical protein	NA	NA	NA	NA
WP_003643792.1\|1445778_1446198_+	hypothetical protein	NA	NA	NA	NA
WP_033608295.1\|1446489_1446954_+	hypothetical protein	NA	NA	NA	NA
WP_003641962.1\|1447232_1447850_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_003646460.1\|1447853_1449008_-	MFS transporter	NA	NA	NA	NA
WP_054398071.1\|1449011_1449803_-	HAD family hydrolase	NA	NA	NA	NA
WP_054398072.1\|1449873_1450746_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003641966.1\|1450905_1451721_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_011100994.1\|1452246_1453623_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_033608300.1\|1453667_1454852_+	cation:proton antiporter	NA	NA	NA	NA
WP_054398074.1\|1455277_1455664_+	hypothetical protein	NA	NA	NA	NA
WP_054398076.1\|1455708_1456242_+	hypothetical protein	NA	NA	NA	NA
WP_003646466.1\|1456875_1457052_+\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_054398078.1\|1458137_1458341_+	hypothetical protein	NA	NA	NA	NA
WP_003643803.1\|1458574_1458727_-	hypothetical protein	NA	NA	NA	NA
WP_054398080.1\|1458751_1459420_-	hypothetical protein	NA	NA	NA	NA
WP_154816394.1\|1460010_1460178_+	hypothetical protein	NA	NA	NA	NA
WP_016527164.1\|1462195_1463194_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.9e-50	38.9
WP_114788251.1\|1463893_1464055_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_154589306.1\|1464074_1464233_-	hypothetical protein	NA	NA	NA	NA
WP_054397533.1\|1464516_1466667_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.1e-45	27.9
WP_054397535.1\|1466682_1468059_+	HlyD family secretion protein	NA	NA	NA	NA
WP_015825127.1\|1468148_1468838_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_054397537.1\|1468905_1469574_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_4

1657821 : 1666444

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054396901.1\|1657821_1659519_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.0e-55	37.0
WP_003640956.1\|1659540_1659849_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_003637790.1\|1659864_1660464_+	recombination protein RecR	NA	NA	NA	NA
WP_003640957.1\|1660478_1660730_+	YaaL family protein	NA	NA	NA	NA
WP_057716948.1\|1661127_1661793_+	dTMP kinase	M1PSC7	Streptococcus_phage	6.4e-54	53.2
WP_057716947.1\|1661789_1662119_+	hypothetical protein	NA	NA	NA	NA
WP_003640966.1\|1662135_1663155_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
WP_003640967.1\|1663179_1663527_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
WP_003643942.1\|1663624_1664521_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.9e-82	55.7
WP_003640969.1\|1664524_1665310_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_015379869.1\|1665448_1666444_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	7.7e-51	37.9

DBSCAN-SWA_5

2278439 : 2288277

Lactobacillus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057717579.1\|2278439_2279669_+	hypothetical protein	A0A2P0ZL72	Lactobacillus_phage	1.3e-214	97.2
WP_057717580.1\|2279759_2280731_-	peptidase S41	A0A2P0ZL68	Lactobacillus_phage	5.0e-180	98.1
WP_057717581.1\|2280916_2281864_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.1e-176	99.0
WP_003643097.1\|2282207_2282822_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
WP_057717582.1\|2282824_2285263_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.3
WP_057717583.1\|2285350_2285911_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	5.9e-101	99.5
WP_057717584.1\|2285981_2286422_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	2.0e-75	97.3
WP_015380221.1\|2286517_2286655_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_057717585.1\|2287281_2288277_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.2e-51	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028228

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028226

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection