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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028247 Pediococcus acidilactici strain SRCM102731 chromosome, complete genome 4 crisprs csn2,cas2,cas9,csa3,DinG,cas3,DEDDh 2 0 137 1
NZ_CP028248 Pediococcus acidilactici strain SRCM102731 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP028247
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028247_1 58151-58254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028247_2 271540-271641 TypeII NA
1 spacers
csn2,cas2,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028247_3 332276-332425 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028247_4 672927-673088 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP028247_3 3.1|332327|48|NZ_CP028247|CRISPRCasFinder 332327-332374 48 NZ_CP028247.1 332623-332670 1 0.979
NZ_CP028247_4 4.2|673053|22|NZ_CP028247|PILER-CR 673053-673074 22 NZ_CP028247.1 673205-673226 1 0.955
NZ_CP028247_4 4.2|673053|22|NZ_CP028247|PILER-CR 673053-673074 22 NZ_CP028247.1 673445-673466 2 0.909
NZ_CP028247_4 4.2|673053|22|NZ_CP028247|PILER-CR 673053-673074 22 NZ_CP028247.1 673532-673553 2 0.909

1. spacer 3.1|332327|48|NZ_CP028247|CRISPRCasFinder matches to position: 332623-332670, mismatch: 1, identity: 0.979

ggccccaacttcctccggctaaccaaattaaggcaccaattgctaaac	CRISPR spacer
ggccccaacttcctccggttaaccaaattaaggcaccaattgctaaac	Protospacer
******************.*****************************

2. spacer 4.2|673053|22|NZ_CP028247|PILER-CR matches to position: 673205-673226, mismatch: 1, identity: 0.955

gtcagatgctgacgtcgagcga	CRISPR spacer
gtcagatgctgacgtcgaacga	Protospacer
******************.***

3. spacer 4.2|673053|22|NZ_CP028247|PILER-CR matches to position: 673445-673466, mismatch: 2, identity: 0.909

gtcagatgctgacgtcgagcga	CRISPR spacer
gtcagatgccgacgttgagcga	Protospacer
*********.*****.******

4. spacer 4.2|673053|22|NZ_CP028247|PILER-CR matches to position: 673532-673553, mismatch: 2, identity: 0.909

gtcagatgctgacgtcgagcga	CRISPR spacer
gtcagatgccgacgttgagcga	Protospacer
*********.*****.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 55330 62 Lactobacillus_phage(40.0%) capsid,protease,integrase,tRNA,head,terminase,portal attL 5609:5623|attR 33378:33392
DBSCAN-SWA_2 68046 : 77943 9 Hokovirus(25.0%) protease NA
DBSCAN-SWA_3 82651 : 84577 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_4 102719 : 156778 49 Escherichia_phage(21.43%) protease,integrase,transposase attL 137220:137236|attR 164174:164190
DBSCAN-SWA_5 164477 : 165515 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_6 168698 : 169073 1 Aeribacillus_phage(100.0%) NA NA
DBSCAN-SWA_7 176633 : 194292 16 Enterococcus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_8 205163 : 206981 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_9 212598 : 221697 11 Ostreococcus_lucimarinus_virus(20.0%) tRNA NA
DBSCAN-SWA_10 228112 : 238090 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_11 241170 : 245131 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_12 249624 : 251202 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_13 255466 : 256171 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_14 261242 : 263232 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_15 266828 : 268758 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_16 273298 : 274372 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_17 280092 : 288741 5 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_18 292553 : 293471 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_19 305274 : 309549 7 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_20 313014 : 314367 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_21 320084 : 326232 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_22 329958 : 333814 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_23 338224 : 338644 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_24 357891 : 358830 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_25 362098 : 363034 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_26 377381 : 378764 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_27 382876 : 386952 4 Halovirus(33.33%) NA NA
DBSCAN-SWA_28 391226 : 392081 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_29 401866 : 409914 6 Proteus_phage(20.0%) NA NA
DBSCAN-SWA_30 414047 : 419216 4 Hokovirus(50.0%) NA NA
DBSCAN-SWA_31 441195 : 445241 4 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_32 460076 : 460835 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_33 469566 : 472519 2 Klosneuvirus(50.0%) tRNA NA
DBSCAN-SWA_34 483972 : 484938 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_35 496520 : 497774 1 Cronobacter_phage(100.0%) tRNA NA
DBSCAN-SWA_36 523615 : 527165 3 Geobacillus_virus(50.0%) NA NA
DBSCAN-SWA_37 531503 : 532821 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_38 539806 : 544035 4 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_39 582096 : 585882 3 Listeria_phage(50.0%) integrase attL 582010:582032|attR 583209:583231
DBSCAN-SWA_40 590351 : 591029 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_41 597659 : 598553 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_42 644925 : 647698 3 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_43 653190 : 656970 4 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_44 688388 : 688664 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_45 701652 : 702201 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_46 706426 : 710239 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_47 713513 : 726551 11 Bacillus_virus(40.0%) NA NA
DBSCAN-SWA_48 733994 : 734741 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 740677 : 741076 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_50 744596 : 747618 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_51 752173 : 755890 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_52 776619 : 777432 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_53 784006 : 787103 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_54 790287 : 792904 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_55 803522 : 804422 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 821090 : 824479 3 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_57 855620 : 868285 13 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_58 873279 : 883353 11 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_59 888136 : 889423 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_60 930989 : 946577 12 Tupanvirus(33.33%) holin NA
DBSCAN-SWA_61 970880 : 971954 1 unidentified_phage(100.0%) transposase NA
DBSCAN-SWA_62 978240 : 980094 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_63 999237 : 1010579 7 Cafeteria_roenbergensis_virus(20.0%) NA NA
DBSCAN-SWA_64 1014144 : 1015116 1 Shigella_phage(100.0%) NA NA
DBSCAN-SWA_65 1024684 : 1027413 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_66 1037131 : 1037863 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_67 1042295 : 1046633 4 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_68 1056418 : 1060346 5 Diachasmimorpha_longicaudata_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_69 1071113 : 1078794 6 Chrysochromulina_ericina_virus(33.33%) tRNA NA
DBSCAN-SWA_70 1084782 : 1097930 10 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_71 1114985 : 1145299 36 Streptococcus_phage(21.43%) tRNA NA
DBSCAN-SWA_72 1153497 : 1154388 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_73 1157398 : 1158727 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_74 1162979 : 1165873 4 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_75 1172099 : 1174295 2 Lactobacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_76 1178253 : 1188225 3 Cronobacter_phage(33.33%) protease NA
DBSCAN-SWA_77 1191284 : 1193378 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_78 1207987 : 1209669 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_79 1215685 : 1228582 12 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_80 1233063 : 1236703 3 Catovirus(33.33%) NA NA
DBSCAN-SWA_81 1240162 : 1244474 3 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_82 1251390 : 1260788 8 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_83 1269407 : 1273011 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1277888 : 1284432 7 Lactococcus_phage(20.0%) NA NA
DBSCAN-SWA_85 1294167 : 1300464 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_86 1308100 : 1309378 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_87 1316164 : 1318828 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_88 1323627 : 1328011 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_89 1333109 : 1362382 22 Bacillus_phage(16.67%) tRNA NA
DBSCAN-SWA_90 1366891 : 1367623 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_91 1371067 : 1374431 3 Cedratvirus(33.33%) NA NA
DBSCAN-SWA_92 1384116 : 1384764 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_93 1407563 : 1409915 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_94 1424114 : 1427823 3 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_95 1433119 : 1436671 2 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_96 1442151 : 1446920 5 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_97 1452194 : 1456162 4 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_98 1461146 : 1580300 127 Lactobacillus_phage(31.48%) plate,capsid,protease,holin,tail,integrase,tRNA,head,terminase,portal attL 1488182:1488202|attR 1527764:1527784
DBSCAN-SWA_99 1584874 : 1590606 7 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_100 1595018 : 1608168 15 Bacillus_phage(20.0%) tRNA NA
DBSCAN-SWA_101 1613134 : 1614562 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_102 1621401 : 1621827 1 Anguillid_herpesvirus(100.0%) NA NA
DBSCAN-SWA_103 1634421 : 1644532 10 Synechococcus_phage(28.57%) NA NA
DBSCAN-SWA_104 1648625 : 1661221 10 Mollivirus(33.33%) protease NA
DBSCAN-SWA_105 1666416 : 1667748 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_106 1671412 : 1684549 10 Bacillus_virus(33.33%) protease NA
DBSCAN-SWA_107 1687675 : 1694415 4 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_108 1698372 : 1698966 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_109 1702900 : 1706260 3 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_110 1710307 : 1716176 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_111 1729831 : 1730740 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_112 1737126 : 1737726 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_113 1741491 : 1744275 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_114 1752787 : 1763465 9 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_115 1768504 : 1769383 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_116 1773505 : 1776580 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_117 1780778 : 1790130 6 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_118 1794088 : 1794838 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_119 1798355 : 1802438 7 Paramecium_bursaria_Chlorella_virus(50.0%) tRNA NA
DBSCAN-SWA_120 1811902 : 1812631 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_121 1816121 : 1819090 5 Rhodobacter_phage(50.0%) NA NA
DBSCAN-SWA_122 1827504 : 1828203 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_123 1836657 : 1845876 8 Golden_Marseillevirus(25.0%) tRNA NA
DBSCAN-SWA_124 1851030 : 1853225 2 Acanthamoeba_polyphaga_moumouvirus(50.0%) NA NA
DBSCAN-SWA_125 1858386 : 1858926 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_126 1865056 : 1865791 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_127 1874912 : 1875569 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_128 1879274 : 1880321 1 Bodo_saltans_virus(100.0%) tRNA NA
DBSCAN-SWA_129 1888965 : 1891466 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_130 1898770 : 1921341 21 Bacillus_phage(22.22%) holin,tRNA NA
DBSCAN-SWA_131 1932036 : 1933725 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_132 1937922 : 1939110 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_133 1943319 : 1949801 6 Leuconostoc_phage(33.33%) NA NA
DBSCAN-SWA_134 1955813 : 1958434 3 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_135 1990848 : 1992216 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_136 2001600 : 2001936 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_137 2007243 : 2014417 9 Lactobacillus_phage(80.0%) holin,plate NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP028247.1|WP_128211592.1|332830_333814_-|NAD(P)/FAD-dependent-oxidoreductase 332830_333814_- 327 aa aa NA NA NA 329958-333814 yes