CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP028252	Leuconostoc mesenteroides strain SRCM102733 plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP028251	Leuconostoc mesenteroides strain SRCM102733 chromosome, complete genome	0 crisprs	DEDDh,RT,cas3,csa3	5
NZ_CP028253	Leuconostoc mesenteroides strain SRCM102733 plasmid unnamed2, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

365512 : 418187

Lactobacillus_phage(39.29%)

tail,tRNA,terminase,integrase,head,protease,capsid,portal

attL 370817:370833|attR 388552:388568

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_105296113.1\|365512_366421_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_011680050.1\|366417_367368_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_011680049.1\|367489_368515_+	heat-inducible transcription repressor HrcA	NA	NA	NA	NA
WP_105296112.1\|368531_369101_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_011680047.1\|369187_371035_+	molecular chaperone DnaK	A0A1V0SAK3	Catovirus	9.0e-138	46.4
370817:370833	attL	NA	NA	NA	NA
WP_105296111.1\|371098_371980_+	DnaJ domain-containing protein	A0A2H4UVP1	Bodo_saltans_virus	3.3e-13	25.1
WP_011680045.1\|372029_372608_-	peptide deformylase	A0A2I7S809	Vibrio_phage	5.9e-11	35.7
WP_002815004.1\|372663_372936_+	UPF0223 family protein	NA	NA	NA	NA
WP_011680044.1\|372932_373721_+	inositol monophosphatase family protein	NA	NA	NA	NA
WP_002815002.1\|373782_375624_+	translational GTPase TypA	NA	NA	NA	NA
WP_010291057.1\|375933_376146_-	hypothetical protein	NA	NA	NA	NA
WP_011680043.1\|376515_378204_+	hypothetical protein	NA	NA	NA	NA
WP_011680042.1\|378246_378567_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_011680041.1\|378681_379401_-	hypothetical protein	NA	NA	NA	NA
WP_011680040.1\|379596_380487_-	EamA family transporter RarD	NA	NA	NA	NA
WP_011680039.1\|380581_381115_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.8e-31	38.1
WP_011680038.1\|381293_381812_-	hypothetical protein	NA	NA	NA	NA
WP_160215121.1\|382137_383205_-\|integrase	site-specific integrase	E3W8I1	Leuconostoc_phage	8.3e-120	60.3
WP_160215122.1\|383634_384231_+	hypothetical protein	NA	NA	NA	NA
WP_160215123.1\|384220_384358_-	hypothetical protein	NA	NA	NA	NA
WP_160215124.1\|384425_384863_-	hypothetical protein	NA	NA	NA	NA
WP_114666128.1\|384866_385205_-	helix-turn-helix transcriptional regulator	A0A097QQ00	Enterococcus_phage	1.3e-15	46.6
WP_114666127.1\|385459_385675_+	hypothetical protein	NA	NA	NA	NA
WP_160215125.1\|385691_385886_+	hypothetical protein	NA	NA	NA	NA
WP_160215126.1\|385882_386272_-	DUF2513 domain-containing protein	A0A0H4TJ44	Erysipelothrix_phage	1.7e-09	36.8
WP_160215127.1\|386365_386560_+	hypothetical protein	E3W8C1	Leuconostoc_phage	3.0e-28	90.6
WP_160215128.1\|386565_387288_+	oxidoreductase	A0A1X9H088	Staphylococcus_phage	5.0e-76	63.4
WP_160215129.1\|387553_387898_+	hypothetical protein	NA	NA	NA	NA
WP_160215130.1\|387900_388800_+	DUF1351 domain-containing protein	NA	NA	NA	NA
388552:388568	attR	NA	NA	NA	NA
WP_160215131.1\|388799_389501_+	DUF1071 domain-containing protein	O48509	Lactococcus_phage	3.0e-62	65.2
WP_160215132.1\|389466_389892_+	single-stranded DNA-binding protein	A0A097BYB0	Leuconostoc_phage	9.2e-54	75.2
WP_160215133.1\|389902_390817_+	hypothetical protein	Q9AZA0	Lactobacillus_prophage	5.4e-51	54.6
WP_160215134.1\|390821_391121_+	hypothetical protein	A0A097BYB9	Leuconostoc_phage	3.3e-26	61.8
WP_160215135.1\|391120_391825_+	hypothetical protein	E3W8D3	Leuconostoc_phage	9.4e-96	69.3
WP_160215136.1\|391827_392013_+	hypothetical protein	NA	NA	NA	NA
WP_160215137.1\|392132_392354_+	hypothetical protein	A0A097BYE4	Leuconostoc_phage	4.8e-14	60.6
WP_129531635.1\|392346_392745_+	hypothetical protein	NA	NA	NA	NA
WP_160215138.1\|392747_393188_+	hypothetical protein	NA	NA	NA	NA
WP_160215139.1\|393607_394030_+	DUF722 domain-containing protein	E3W8E2	Leuconostoc_phage	4.0e-09	31.7
WP_010292058.1\|394792_394990_+	hypothetical protein	NA	NA	NA	NA
WP_160215140.1\|395036_395354_+	hypothetical protein	NA	NA	NA	NA
WP_160215141.1\|395416_396217_+	hypothetical protein	NA	NA	NA	NA
WP_160215142.1\|396259_396445_+	hypothetical protein	NA	NA	NA	NA
WP_160215143.1\|396515_396767_+	hypothetical protein	NA	NA	NA	NA
WP_160215144.1\|396829_397723_+	hypothetical protein	NA	NA	NA	NA
WP_160215222.1\|397915_398368_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	3.8e-42	51.6
WP_129531644.1\|398555_399023_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	3.0e-50	65.8
WP_160215145.1\|399009_400887_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	2.6e-270	70.2
WP_128684384.1\|400883_401081_+	DUF1056 family protein	Q94MB1	Lactococcus_phage	5.1e-07	48.4
WP_160215146.1\|401083_402250_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.4e-115	53.1
WP_160215147.1\|402233_402953_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	6.9e-70	61.6
WP_160215148.1\|402958_404176_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	2.9e-116	56.1
WP_160215149.1\|404240_404579_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	1.9e-17	45.9
WP_160215150.1\|404559_404904_+\|head	phage head closure protein	NA	NA	NA	NA
WP_160215151.1\|404896_405325_+	HK97 gp10 family phage protein	A8YQJ5	Lactobacillus_phage	6.5e-15	38.1
WP_160215152.1\|405321_405693_+	DUF806 family protein	NA	NA	NA	NA
WP_160215153.1\|405696_406347_+	hypothetical protein	NA	NA	NA	NA
WP_160215154.1\|406426_406792_+	hypothetical protein	K4I0D9	Lactobacillus_phage	1.6e-06	35.0
WP_160215155.1\|407030_412121_+	hypothetical protein	E9LUR1	Lactobacillus_phage	3.2e-129	44.3
WP_160215223.1\|412186_413299_+	hypothetical protein	NA	NA	NA	NA
WP_160215156.1\|413312_418187_+	hypothetical protein	A0A2K9VCK7	Lactobacillus_phage	2.5e-25	44.2

DBSCAN-SWA_2

632475 : 685368

Streptococcus_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160215173.1\|632475_633501_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.0e-38	34.1
WP_160215174.1\|634223_636242_-	hypothetical protein	NA	NA	NA	NA
WP_160215175.1\|636309_637191_-	class A sortase	NA	NA	NA	NA
WP_160215176.1\|637201_639379_-	hypothetical protein	NA	NA	NA	NA
WP_013102158.1\|639394_639784_-	hypothetical protein	NA	NA	NA	NA
WP_150288706.1\|640078_640675_-	hypothetical protein	NA	NA	NA	NA
WP_150288707.1\|640677_641235_-	hypothetical protein	NA	NA	NA	NA
WP_150288708.1\|641237_641663_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_160215177.1\|641675_642926_-	M23 family metallopeptidase	A0A191KBX1	Streptococcus_virus	1.7e-07	35.0
WP_105296052.1\|642929_643124_-	hypothetical protein	NA	NA	NA	NA
WP_160215178.1\|643125_645081_-	type IV secretion system protein VirB4	NA	NA	NA	NA
WP_150288711.1\|645083_645737_-	hypothetical protein	NA	NA	NA	NA
WP_150288712.1\|645736_646066_-	hypothetical protein	NA	NA	NA	NA
WP_146992689.1\|646435_647215_+	AAA family ATPase	Q7M293	Enterobacteria_phage	1.9e-09	28.2
WP_004915935.1\|647214_647496_+	hypothetical protein	NA	NA	NA	NA
WP_150288713.1\|647541_648045_-	hypothetical protein	NA	NA	NA	NA
WP_150288714.1\|648107_650204_-	hypothetical protein	NA	NA	NA	NA
WP_150288715.1\|650200_653221_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_160215179.1\|653207_655106_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1S6UBG5	Serratia_phage	5.4e-61	29.8
WP_150288717.1\|655102_655585_-	hypothetical protein	NA	NA	NA	NA
WP_150288718.1\|655597_657865_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_150288719.1\|657851_658118_-	hypothetical protein	NA	NA	NA	NA
WP_146955676.1\|658570_659002_+	hypothetical protein	NA	NA	NA	NA
WP_146955675.1\|659019_659364_+	hypothetical protein	NA	NA	NA	NA
WP_146955674.1\|659374_659746_+	hypothetical protein	NA	NA	NA	NA
WP_146955673.1\|659732_659945_+	hypothetical protein	NA	NA	NA	NA
WP_146958288.1\|660300_660522_+	hypothetical protein	NA	NA	NA	NA
WP_160215180.1\|660521_660965_+	hypothetical protein	NA	NA	NA	NA
WP_160215181.1\|660957_661170_+	hypothetical protein	NA	NA	NA	NA
WP_021210377.1\|661180_661399_+	hypothetical protein	NA	NA	NA	NA
WP_146955671.1\|661619_661829_-	hypothetical protein	NA	NA	NA	NA
WP_146955670.1\|661846_662077_+	hypothetical protein	NA	NA	NA	NA
WP_146955669.1\|662057_662381_+	hypothetical protein	NA	NA	NA	NA
WP_146955668.1\|662393_662639_+	hypothetical protein	NA	NA	NA	NA
WP_146955667.1\|662672_663104_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_150288723.1\|663359_663728_-	hypothetical protein	E3W8I0	Leuconostoc_phage	1.6e-14	41.3
WP_160215182.1\|663720_665043_-	Y-family DNA polymerase	Q6DMX4	Streptococcus_phage	1.1e-84	39.7
WP_059442524.1\|665833_667096_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA
WP_102753266.1\|667112_668741_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_102753267.1\|668882_669776_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_102753268.1\|670104_670509_-	cytidine deaminase	NA	NA	NA	NA
WP_105296024.1\|670649_671492_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.7e-155	98.2
WP_102753270.1\|671545_671797_-\|transposase	transposase	Q6J1X3	Lactobacillus_phage	3.5e-37	95.2
WP_102753271.1\|671826_673080_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	9.8e-96	46.5
WP_102753272.1\|673385_674576_-	galactokinase	NA	NA	NA	NA
WP_102753273.1\|674598_675603_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.5e-51	37.4
WP_160215183.1\|675609_677118_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_102753275.1\|677243_678482_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_105296023.1\|678503_680423_-	phosphotransferase enzyme IIA component	NA	NA	NA	NA
WP_102753277.1\|680438_682490_-	beta-galactosidase	NA	NA	NA	NA
WP_102753278.1\|682702_683716_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_102753279.1\|683883_685368_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1001076 : 1009765

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025267927.1\|1001076_1001667_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.0e-27	40.3
WP_025267926.1\|1001660_1002698_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HPW9	Synechococcus_phage	1.8e-58	39.6
WP_025267925.1\|1002694_1004305_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.4e-46	31.3
WP_025267924.1\|1004283_1006500_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-143	38.9
WP_011679512.1\|1006504_1007173_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_004164272.1\|1007169_1007439_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_038534119.1\|1007440_1008190_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.2e-35	35.5
WP_025267922.1\|1008173_1009283_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_025267921.1\|1009279_1009765_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	45.6

DBSCAN-SWA_4

1137342 : 1146347

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011679413.1\|1137342_1138113_-	phosphate ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	3.7e-13	26.0
WP_011679412.1\|1138109_1138952_-	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.0e-11	28.4
WP_010291776.1\|1138959_1139844_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011679411.1\|1139843_1140767_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_014324427.1\|1140819_1141701_-	phosphate ABC transporter substrate-binding protein PstS family protein	M1U9L0	Synechococcus_phage	1.7e-09	32.0
WP_025267871.1\|1141842_1143183_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	6.1e-19	27.4
WP_025267870.1\|1143266_1144175_-	phosphate ABC transporter substrate-binding protein	M1U9L0	Synechococcus_phage	9.2e-11	28.2
WP_011679406.1\|1144414_1145107_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.8e-36	34.5
WP_011679405.1\|1145189_1146347_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.1e-117	65.1

DBSCAN-SWA_5

1625898 : 1631140

Organic_Lake_phycodnavirus(100.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010287275.1\|1625898_1626075_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_010287277.1\|1626236_1626416_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_011679065.1\|1626430_1626568_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_011679064.1\|1626724_1627030_-	hypothetical protein	NA	NA	NA	NA
WP_010287029.1\|1627026_1627188_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_010287032.1\|1627218_1627395_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_011679063.1\|1627625_1629773_+	peptide cleavage/export ABC transporter	F2Y352	Organic_Lake_phycodnavirus	1.1e-22	30.5
WP_011679062.1\|1629790_1631140_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage