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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028255 Leuconostoc mesenteroides strain SRCM102735 chromosome, complete genome 0 crisprs DEDDh,RT,cas3,csa3 0 0 146 0
NZ_CP028256 Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP028257 Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed2, complete sequence 1 crisprs csa3 0 1 3 0
NZ_CP028258 Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed3, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP028255
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 13254 10 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_2 18059 : 18983 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 25169 : 27589 3 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 35002 : 37913 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_5 51289 : 52576 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_6 60426 : 63472 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_7 71016 : 78311 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_8 82616 : 85347 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_9 89028 : 99456 10 Bacillus_phage(33.33%) protease NA
DBSCAN-SWA_10 118740 : 129153 11 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_11 138549 : 146107 8 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_12 153635 : 154025 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_13 168223 : 168862 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_14 172472 : 179582 8 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_15 184905 : 191034 7 Lactobacillus_phage(33.33%) NA NA
DBSCAN-SWA_16 197386 : 254911 73 Leuconostoc_phage(38.24%) head,tail,portal,holin,terminase,tRNA,capsid,protease,integrase attL 198973:198990|attR 223537:223554
DBSCAN-SWA_17 260602 : 268094 9 Anomala_cuprea_entomopoxvirus(25.0%) NA NA
DBSCAN-SWA_18 278053 : 282601 4 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_19 285723 : 287088 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_20 291247 : 300260 7 Catovirus(33.33%) NA NA
DBSCAN-SWA_21 306833 : 307544 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_22 325876 : 339076 14 Bacillus_virus(28.57%) NA NA
DBSCAN-SWA_23 350131 : 350950 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_24 360356 : 370002 9 Staphylococcus_phage(42.86%) protease,integrase attL 355591:355605|attR 365263:365277
DBSCAN-SWA_25 376151 : 380649 5 Acanthamoeba_castellanii_mimivirus(50.0%) NA NA
DBSCAN-SWA_26 397526 : 400319 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_27 407463 : 411156 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_28 415724 : 418257 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_29 422374 : 429695 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_30 437107 : 447776 12 Sphingomonas_phage(25.0%) NA NA
DBSCAN-SWA_31 457400 : 458674 2 Indivirus(50.0%) NA NA
DBSCAN-SWA_32 464867 : 467397 3 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_33 474200 : 475514 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_34 489892 : 492080 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_35 499160 : 502668 4 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_36 506782 : 513032 5 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_37 524360 : 532637 5 Bacillus_virus(66.67%) tRNA NA
DBSCAN-SWA_38 536726 : 539231 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_39 545122 : 548561 3 Catovirus(33.33%) NA NA
DBSCAN-SWA_40 556530 : 559174 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_41 569601 : 572712 1 Herpes_simplex_virus(100.0%) NA NA
DBSCAN-SWA_42 579023 : 580325 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_43 586316 : 591996 8 uncultured_Mediterranean_phage(40.0%) NA NA
DBSCAN-SWA_44 597758 : 601295 5 Geobacillus_virus(50.0%) NA NA
DBSCAN-SWA_45 608050 : 613266 4 Thermus_virus(33.33%) NA NA
DBSCAN-SWA_46 619720 : 630181 10 Caulobacter_phage(16.67%) NA NA
DBSCAN-SWA_47 634598 : 640084 7 Leuconostoc_phage(50.0%) integrase,holin,tRNA attL 635993:636007|attR 643007:643021
DBSCAN-SWA_48 646408 : 649909 3 Methanothermobacter_phage(50.0%) tRNA NA
DBSCAN-SWA_49 653859 : 657117 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_50 661701 : 662340 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_51 673625 : 675479 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_52 679584 : 690874 11 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_53 694351 : 694924 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_54 700108 : 701287 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_55 704848 : 705730 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_56 714137 : 715508 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_57 725814 : 787497 62 Staphylococcus_phage(20.0%) protease,integrase,transposase attL 772091:772150|attR 784553:784658
DBSCAN-SWA_58 793655 : 797573 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_59 804031 : 805000 1 Streptococcus_virus(100.0%) NA NA
DBSCAN-SWA_60 815991 : 816192 1 Clostridioides_phage(100.0%) NA NA
DBSCAN-SWA_61 819212 : 824290 5 Clostridioides_phage(33.33%) transposase NA
DBSCAN-SWA_62 835537 : 837233 2 Leuconostoc_phage(50.0%) NA NA
DBSCAN-SWA_63 847383 : 849505 2 Tetraselmis_virus(50.0%) NA NA
DBSCAN-SWA_64 852896 : 855587 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_65 862242 : 862914 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_66 867243 : 867987 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_67 892354 : 902754 11 Prochlorococcus_phage(25.0%) NA NA
DBSCAN-SWA_68 929704 : 930712 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_69 939895 : 942148 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_70 958406 : 959249 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_71 962819 : 963689 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_72 989329 : 991182 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_73 998495 : 1004887 5 Staphylococcus_phage(60.0%) NA NA
DBSCAN-SWA_74 1019586 : 1022772 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_75 1027723 : 1034261 7 Erysipelothrix_phage(25.0%) NA NA
DBSCAN-SWA_76 1043742 : 1046844 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_77 1056348 : 1063660 4 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_78 1068378 : 1071135 3 Indivirus(50.0%) NA NA
DBSCAN-SWA_79 1075545 : 1078099 3 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_80 1081301 : 1088568 6 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_81 1094270 : 1095680 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_82 1104317 : 1105607 1 Turkeypox_virus(100.0%) NA NA
DBSCAN-SWA_83 1110632 : 1120844 10 Prochlorococcus_phage(42.86%) NA NA
DBSCAN-SWA_84 1125307 : 1129772 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_85 1135214 : 1135439 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_86 1141544 : 1147261 5 Hokovirus(33.33%) NA NA
DBSCAN-SWA_87 1150351 : 1154665 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_88 1158590 : 1161293 2 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_89 1180915 : 1185768 2 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_90 1194322 : 1204364 9 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_91 1209890 : 1218058 8 Staphylococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_92 1223605 : 1237683 15 Organic_Lake_phycodnavirus(14.29%) tRNA NA
DBSCAN-SWA_93 1241801 : 1243744 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_94 1248395 : 1264586 16 Synechococcus_phage(22.22%) NA NA
DBSCAN-SWA_95 1268726 : 1282301 10 Bacillus_phage(33.33%) protease NA
DBSCAN-SWA_96 1286260 : 1290533 2 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_97 1295378 : 1296287 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_98 1301757 : 1303614 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_99 1308525 : 1308774 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_100 1314715 : 1320623 6 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_101 1329518 : 1331132 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_102 1336548 : 1337895 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_103 1346796 : 1350357 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_104 1368249 : 1369745 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_105 1373942 : 1376248 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_106 1381656 : 1382958 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_107 1388973 : 1391536 3 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_108 1394906 : 1420537 21 Streptococcus_phage(18.18%) tRNA NA
DBSCAN-SWA_109 1426948 : 1431264 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_110 1435342 : 1441502 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_111 1445099 : 1451639 5 Klosneuvirus(25.0%) protease,tRNA NA
DBSCAN-SWA_112 1457394 : 1467250 6 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_113 1471017 : 1474517 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_114 1483209 : 1489585 6 Planktothrix_phage(50.0%) tRNA NA
DBSCAN-SWA_115 1495169 : 1496063 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_116 1499516 : 1500710 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_117 1505238 : 1510754 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_118 1524156 : 1526145 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_119 1530816 : 1537927 5 Lactobacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_120 1544679 : 1545411 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_121 1554952 : 1563901 8 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_122 1574029 : 1581199 9 Streptococcus_phage(60.0%) NA NA
DBSCAN-SWA_123 1595075 : 1599102 4 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_124 1604793 : 1606727 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_125 1612204 : 1613530 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_126 1619259 : 1620911 2 Brazilian_cedratvirus(50.0%) NA NA
DBSCAN-SWA_127 1639987 : 1649835 8 Mycoplasma_phage(50.0%) protease NA
DBSCAN-SWA_128 1653696 : 1655004 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_129 1662407 : 1663814 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_130 1669137 : 1669677 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_131 1674504 : 1735417 56 Erysipelothrix_phage(25.0%) protease,bacteriocin NA
DBSCAN-SWA_132 1745485 : 1747042 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_133 1758594 : 1773308 14 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_134 1784820 : 1786005 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_135 1797115 : 1805318 6 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_136 1820418 : 1821246 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_137 1826521 : 1835625 9 Planktothrix_phage(25.0%) tRNA NA
DBSCAN-SWA_138 1840110 : 1843310 3 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_139 1856484 : 1866236 9 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_140 1895330 : 1908507 12 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_141 1913526 : 1916349 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_142 1922090 : 1929162 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_143 1937578 : 1942064 3 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_144 1948373 : 1952359 3 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_145 1962647 : 1964204 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_146 1968768 : 1969344 1 Lactobacillus_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP028257
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028257_1 25955-26057 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP028257 Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed2, complete sequence 25992-26020 0 1.0
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP035749 Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed3, complete sequence 1513-1541 0 1.0
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016938 Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence 61410-61438 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016934 Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence 8689-8717 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016941 Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence 21621-21649 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016932 Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence 15146-15174 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016932 Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence 125277-125305 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 CP016947 Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence 73663-73691 7 0.759
NZ_CP028257_1 1.1|25992|29|NZ_CP028257|CRISPRCasFinder 25992-26020 29 NZ_CP016942 Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence 9705-9733 7 0.759

1. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP028257 (Leuconostoc mesenteroides strain SRCM102735 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
agaacttgtattcgttgccgtttctggaa	Protospacer
*****************************

2. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP035749 (Leuconostoc mesenteroides strain SRCM103460 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
agaacttgtattcgttgccgtttctggaa	Protospacer
*****************************

3. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016938 (Yersinia enterocolitica strain YE6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

4. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016934 (Yersinia enterocolitica strain YE7 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

5. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016941 (Yersinia enterocolitica strain YE5 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

6. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

7. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016932 (Yersinia enterocolitica strain YE165 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

8. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to CP016947 (Yersinia enterocolitica strain YE1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

9. spacer 1.1|25992|29|NZ_CP028257|CRISPRCasFinder matches to NZ_CP016942 (Yersinia enterocolitica strain YE3 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

agaacttgtattcgttgccgtttctggaa	CRISPR spacer
gcaacttgtatttgttgccgtctctttga	Protospacer
. **********.********.***  .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 10268 12 uncultured_virus(20.0%) holin NA
DBSCAN-SWA_2 14520 : 15675 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_3 25442 : 28383 3 Streptococcus_pyogenes_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage