CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP028264	Pediococcus pentosaceus strain SRCM102738 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas3,csa3,DinG	0	0	8	0
NZ_CP028265	Pediococcus pentosaceus strain SRCM102738 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028264_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028264_1

434946-435051

Orphan

Consensus_repeat	Method
CAGATGCTCTACCAACTGAGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028264_1

>merge|NZ_CP028264|1|434946-435051|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAA

>NZ_CP028264|1|1|434946-435051|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAA	CGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGG
CAGATGCTCTCCCAACTGAGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028264.1\|WP_002833902.1\|446589_446856_-\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP028264.1\|WP_002833906.1\|450030_450876_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP028264.1\|WP_011673184.1\|430458_431190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028264.1\|WP_011673183.1\|431259_432993_-\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|213733
NZ_CP028264.1\|WP_002833744.1\|426944_427508_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	unknown	unknown	gnl\|CDD\|377744
NZ_CP028264.1\|WP_002833900.1\|444019_444793_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP028264.1\|WP_011673186.1\|426319_426952_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP028264.1\|WP_002833905.1\|449668_450031_-\|DUF1634-domain-containing-protein	unknown	unknown	gnl\|CDD\|377927
NZ_CP028264.1\|WP_002833903.1\|447001_447190_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028264.1\|WP_002833742.1\|429095_430286_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP028264.1\|WP_002833748.1\|420938_421658_-\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP028264.1\|WP_002833746.1\|423555_425973_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP028264.1\|WP_002833899.1\|442754_443930_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340844
NZ_CP028264.1\|WP_002833898.1\|441688_442705_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP028264.1\|WP_041526957.1\|447394_449614_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP028264.1\|WP_002833897.1\|440640_441675_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP028264.1\|WP_011673185.1\|427554_429021_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP028264.1\|WP_002833901.1\|444865_446590_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP028264.1\|WP_002833749.1\|420076_420916_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP028264.1\|WP_011673187.1\|421666_423352_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529

Protein	Function_ID	Function_description	E-value
NZ_CP028264.1\|WP_002833902.1\|446589_446856_-\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	1.69391e-54
NZ_CP028264.1\|WP_002833906.1\|450030_450876_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.61547e-34
NZ_CP028264.1\|WP_011673183.1\|431259_432993_-\|pyruvate-oxidase	gnl\|CDD\|213733	TIGR02720, Pyruvate_oxidase, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. [Energy metabolism, Aerobic].	0
NZ_CP028264.1\|WP_002833744.1\|426944_427508_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	3.74975e-74
NZ_CP028264.1\|WP_002833900.1\|444019_444793_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.25951e-24
NZ_CP028264.1\|WP_011673186.1\|426319_426952_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.97509e-52
NZ_CP028264.1\|WP_002833905.1\|449668_450031_-\|DUF1634-domain-containing-protein	gnl\|CDD\|377927	pfam07843, DUF1634, Protein of unknown function (DUF1634). This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.	1.23608e-28
NZ_CP028264.1\|WP_002833742.1\|429095_430286_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP028264.1\|WP_002833748.1\|420938_421658_-\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	3.21573e-88
NZ_CP028264.1\|WP_002833746.1\|423555_425973_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP028264.1\|WP_002833899.1\|442754_443930_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	3.14908e-136
NZ_CP028264.1\|WP_002833898.1\|441688_442705_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.79241e-34
NZ_CP028264.1\|WP_041526957.1\|447394_449614_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP028264.1\|WP_002833897.1\|440640_441675_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.50457e-33
NZ_CP028264.1\|WP_011673185.1\|427554_429021_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.50566e-64
NZ_CP028264.1\|WP_002833901.1\|444865_446590_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP028264.1\|WP_002833749.1\|420076_420916_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	6.78853e-78
NZ_CP028264.1\|WP_011673187.1\|421666_423352_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.01369e-136

>NZ_CP028264.1|WP_011673183.1|431259_432993_-|pyruvate-oxidase
MTEKINASDAMIKVLESWGVHNVYGLPGGSFDSTMNALYNRKSTINYVQVRHEEVGALAAVGEAKVTGKLGVTFGSAGPGAVHLLNGLYDAKHDHMPVLALVGQVPTTLMNTDYFQELNENPIFTDVAVYNRTVMTAEQMPHVVDEAIRQAYKYSGVAVVTIPKDLGWQPIEDNYVSSANLYQAPILPEPDVKQVDEALEILSNAKHPVMYIGQGTRGAGSDIIALSEKLHIPIVTSALAKGIVPDSYKANMGSAGRVATKPGVEVLQAADAVMFVGSDFPFQPYFVAPDAKYIQVDIDASKFGRRHVVDLAILADSHKFLKVMLEKAETTAESKWYKAALENKKNWEEWKNSFVGQQDTPLNVENVFAKINALATDDAIFQVDVGNVTIDGMRFLKADQAQRFTTSGWYATMGYALPAAIGAQAEYPDRQVWSISGDGGYAMVMQDVLTQVKYHMPIINVILTNESLGFIEAEQDDSKQPHSGVDLIDADYGTSAQALGAEGFEVRTYDELEQAFEKAKDRKGPVVIDIKITNLRPLPVEQLLLDKETQDPEAVEQFVKKYHAESLIPFRKLLEEA
>NZ_CP028264.1|WP_011673184.1|430458_431190_+|hypothetical-protein
MNKINLPKFNYPIEKKSYLPAINALLLSVVPWYLSSHFSSEIFSKHLSIQILFFLATFMVNFLTIDRLTNKTNLRLMAPLAIIPILTFIILLFSENTYVALLGLLSFVPFLTTFLPFEQKNGVGLLTFSLSVGTLAPLAFFYIRNGFVTSILLKMGLLLSLMIIVILFAIFIKTSFKFAIFALALTLIITIFAFILLKSWTALIYPILAVFSWFVPKLHLPRNFTLLVLIALIGLASFFITIN
>NZ_CP028264.1|WP_002833742.1|429095_430286_-|methionine-adenosyltransferase
MSERHLFTSESVSEGHPDKIADQISDSILDELLKNDPDARVACETTVTTGLVVVVGEISTTAYIDIQKVVRKTIKDIGYVGGEYGFDGENCAVIVAIDEQSPDIAQGVDDSLETREGHEDRLNQIGAGDQGLMFGYATNETEELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVTVEYDDNDHPVRVDTVVLSTQHDPDVTLEQIRQDVIEQVIKAVIPATLLDENTNFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGAARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAKLAERVEVQIAYAIGVAEPVSVMVDTFGTGTVSEEKLTQAVRKIFDLRPAGIIEMLDLKRPIYKQTAAYGHFGRTDVELPWEKTDKVEALNDFFKN
>NZ_CP028264.1|WP_011673185.1|427554_429021_-|MFS-transporter
MEKKQTNVVVVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVSLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIFGIIIFLIGSMLSGMAHSMGFLILWRALQGIGAGSIMPVSNTIIADIYPIEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINLPIGIITIFLIQFFLKEEVSVHSKKIDYLGSFWLMVALLGLMYGFQLMGESSFSWITLVISFVIFIVGAGLFIRQEKRAEDPIIFLDLFNNRTFVIQNVATMLVSGLLIGFEVYLPSWTQGILGVPASLAGFAVTPSSILWIFGSFLAGRMIVKLKANQILTISLSILAVGSLLLALVPASTPFLAFFFIAAILGVGFGITITSTLVISQQLVTKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTMNAGVKANPKINMDMMNKVINPQTAKTLPETLLPTLRNVLYQALHNIYIGCFILIVVALIINAFDRRSKDNI
>NZ_CP028264.1|WP_002833744.1|426944_427508_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase
MLDNAMQYSHQLLTEIVQPGDVVIDATMGNGHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFEHQHQTLINVELIHASHDQIDHYVTEPITGAIFNLGYLPGGDKSIITHPTSTISAVQQSLNQLKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQHHYSCLRYEFINQINNPPILLCIERKK
>NZ_CP028264.1|WP_011673186.1|426319_426952_+|phosphatase-PAP2-family-protein
MHSRKYTHLLINILPTLLFILIVSLVIFKPSWVHAYDNSISSLVQSVRTPGFNQVVSIYTQLGNSIPYIIISLIVCLILILKHLKKAALFLACNIVLGNGLNHLIKQIIQRQRPEFRLISIGGYSFPSGHSVAAMVLFGSLIFITFQVVHHQLKRNLLALIYLILMLGIGLSRIYLNVHFPTDVTAGFLLGLIVLQFTTYLFYGRKIKNA
>NZ_CP028264.1|WP_002833746.1|423555_425973_-|leucine--tRNA-ligase
MAYNHKDIEQKWQQFWSDNETFKTVEDADKPKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRMKRMQGYKVLHPMGWDAFGLPAEQYAMKTGNNPRDFTAKNIQNFKRQIQSLGFSYDWSREVNTTDPAYYKWTQWIFEQLYKKGLAYEKETLVNWAPDLMGGTVVANEEVVDGKTERGGFPVYRKPMKQWILKITAYADRLIDDLDLVDWPDSIKEMQKNWIGRSVGASVFFNVEDSEKQIEVFTTRPDTLFGATYLVISPEHDLVDQITTPESKAAVEEYKKAVATKSDLERTDLNKDKTGVFTGAYAVNPVNGKKIPVWISDYVLASYGTGAVMAVPAHDGRDYEFAKKFKIDMVPVYEGGNLEDGVLDSEGGLINSGFLDGMDKQTAIDTMISWLEEHGVGHKKVNYRLRDWVFSRQRYWGEPIPVIHWEDGETTLIPEDELPLRLPAATDIRPSGTGESPLANLDDWVNVVDENGRKGRRETNTMPQWAGSSWYFLRYVDPKNDQKIADEDLLKEWLPVDLYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLVNQGMILGSNHEKMSKSKGNVVNPDDIVERFGADTLRLYEMFMGPLTESVAWSEDGLNGSRKWIDRVWRLMIDDENQLRDHIVTENDGSLDMIYNQTVKKVTDDYENMRFNTAISQMMVFVNEAYKADKLPAVYMEGLVKMLAPIIPHVAEELWSLLGHEGGISYAEWPTYDESKLVEATVQVILQVNGKVRSKITVDKDIAKEELEKLALADAKIQQWTADKTVRKVIVIPNKIVNIVVG
>NZ_CP028264.1|WP_011673187.1|421666_423352_-|polysaccharide-biosynthesis-protein
MDKQSEMDNSESLYMGSQPLRDNSGKSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALFTKGYNIYSFFLIAAIAGIPSAISKQVSHYNAINEFALGQRLYKRGLLLSVGTGIICAAILYFGAPFLKDGDPNVITVLHALAWAVLVIPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVIYMLTTAYFIMGKSGQGDWVYGVSQSTFAAFIGALGGLLVLGIYFIKYRKRLSYLSQHSANELVVSTSTLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMNAVSDYSTAVLNNMYAIFAFNANKLVMIVISLASAMAVTSVPILSEAKTRGDRAEISRQVTDSILLFAFLMIPAALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAIMQGIGENVLAVKYFCVGMIVKFIFQFPMVALFSAVGSLISTAIGFMVVNWMILRHINLEYGLDYRRINTFIGKIITYAFGTFLIAMVVTNGLYIVMDPASKVQSLLVIAAAVVLGGAFYLYFVLKSRLADEIVGARAAGLRRMLKIS
>NZ_CP028264.1|WP_002833748.1|420938_421658_-|16S-rRNA-pseudouridine(516)-synthase
MRVDKFLHDMNMGTRTQIRKMIKDKLIFVNDTVVKTGRVKVDPVVDEVRLKDQVIEYQQYFYFMMNKPLGVLTATEDRKQKTVMDLFNKVDLRNDLFPVGRLDKDTQGLLLITNNGQLAHDLLAPERHVDKTYEAVVTGKITDQAVEEFQKGITLRDGTTLKPAQLIIEHYSELDDQTVVKVVLKEGKYHQVRRMFGSLGEKVVTLRRTSFGPLELDVGLLPGTYRELTDDEINRLVEG
>NZ_CP028264.1|WP_002833749.1|420076_420916_+|NAD(P)H-hydrate-dehydratase
MLKINQDGLNNLWPVRSNDSHKGSYGRILIVAGNDQYGGAGILSSSAAVYAGGGLVTLATDKTNFTAVRSTLAEVMLLDFLDFDALKAALKKSTGVVIGPGLGTNATSLKILKFVLDHVQPQTPLVIDGSAIDLIATHQIQVDHPQTIFTPHQMEWQRLSGIKIVDQNPSLNQRAVDRLKAMVVLKHYETEIYAPHTDFRQIMAGNPGMATGGSGDALTGVIIALVNQVDSLALGVTLGTFLHSYTADQIYQKEAVVLPHRLIRRLPFTLKQLQKNKLL
>NZ_CP028264.1|WP_002833897.1|440640_441675_-|flippase-like-domain-containing-protein
MSRRNKVVLAVMILAGIIIFGFSLRNVNLNQMARDVVHLNMWWLLVALGCIVLYLGLEAVATKMLIQSNGDRLSWRDAIRIPLIEQLFNGITPFSSGGQPAQLVALMQNGIEGGRASSVLLMKFVVFQSMVVINFIFSLLIGFQYLEEKIRFLSWFVLFGFLIHLAVIIGLLMIMYWHNFTKRLISAIFIPIKHFVSKERYTTWKVTLNEKVDSFYQESVRMKSQWRLLAKVALVTFLQLLFYYLIPYFILLALGKSDVNIVMVTCLHVLIFMVISLFPIPGGAGGAEYGFSVIFAQFVGNNSKLVLAMMIWRILTYYFGMFAGMVATVVKPHKVNRVKVVKNE
>NZ_CP028264.1|WP_002833898.1|441688_442705_-|glycosyltransferase-family-4-protein
MPIKVNMFSSASKVKGQGVGSAYEELIRLLKTHFPKQIDVSINKFTKADISHYHTIDPNFYLSTFSKKRGIKVGYVHFLPETIEGSLNIPQPFRSIFYKYIISFYKRMDHIVVVNPTFIDKLVAYGISRDIITYIPNFVRKNEFYRFTEANRDAVRERLEVNNRFTVLGIGQVQERKGVKDFIKLAENNPDKYFIWAGGFSFGRLTDGYADLKQVVDNPPRNLKFTGIVDRNALVEYYNAADLFLLPSYNELFPMSVLEAFSCGVPVMLRDLELYHSIIKGYYIPTQDYEDMNTQLKLVSEDKERLNKFKQLSDEASEEYSEDHLADIWLDFYSSLTK
>NZ_CP028264.1|WP_002833899.1|442754_443930_-|glycosyltransferase-family-4-protein
MNIGLFTDTYFPQVSGVATSIKTLRDQLEKQGHQVYIFTTTDPKVDTNVYERNIFRFTSVPFVSFTDRRIAVSGFIRAAQLAKELNLDIVHTQTEFSLGWMGKFVAKSLKIPLIHTYHTMYEDYLHYVANGKLLKPYHVKQMTRAFCYHIDGIVAPSERVLDTIEGYGINVPIRVIPTGVNLEQYQKPNKRKQWREKLGYDESSPILLSLSRLAYEKNIQEVIDSFPAILKEVPNAQLLIVGDGPARTSLENQVHDLHLEDSVQFTGEINNDHVYGFYQLADLFVSASDTESQGLTYIEALASNLKVVAKSGPYTDELLDDISLGKVFNTEDQLVAAIKDYIEHPDAYNDPAPREKKLYEISADYFGKQVVDYYSSAISTHTDLELDEDSE
>NZ_CP028264.1|WP_002833900.1|444019_444793_-|alpha/beta-hydrolase
MKLKLKSGAQIFFEDEGQGTPILFLTGFGGNTEIWSGQVNFFLQRGYRVIRLDYLNHGQSDRVDGELQIGDLADEVLQLVDYLQLKEPIGIGNSMGAAVLWNIINLRGWDFLSKAIFVDQSPKMLNDQQWHLGFKNLAEDNFDEVMNEPIVRPAYKHIDDFVFKNSKAIDSAYPFSQPRNRALVKGHAKKDWRFVLEQATKPVLFIMGEKSPFFDSTKTAELSALNANITVNVMKNVGHIPMAEDPTEFNRLVLQFV
>NZ_CP028264.1|WP_002833901.1|444865_446590_-|phosphoenolpyruvate--protein-phosphotransferase
MAGTLKGIAASDGIAIAKAYLMVDPDLSFEKKNITDVDAEIKRLHDALEKSKEELSLIKAKAAENLGAEEAEVFEAHLTILSDPELIGNIEDKIKNDTINAEEATKEVTDNFISMFEAMTDNAYMQERAADIRDVTKRLMSHLLGVELPNPALIDSEVVIVAHDLTPSDTAQLDRRYVKGFITDIGGRTSHSAIMSRTLEIPAVVGSEKATTSVKQGEMMIVDGLTGDAIIAPTDDEIKAYQQKGEEFKAQKAEWEKLKNEKTVSKDGVHFDLAANIGTPDDLQGVLDNGGEAVGLFRSEFLYMNASELPSEDEQFEAYKKVVEGMNGKQVVVRTMDIGGDKELPYLPLPEEMNPFLGYRAIRISLDRTDLFRTQLRALLRASAFGKLAIMFPMIATVAEFKKARAIYDDERQKMVDAGQEVGEIQVGMMMEIPAAAMIADKLAKYVDFFSIGTNDLIQYSFAADRGNEKVSYLYQPYNPSLLRLIKQTIDASHAEGKWTGMCGEMAGDQIAVPILMGLGLDEFSMSATSILKTRSLMKKLTTDDMKKLAEKAVTEAETNEDVIKLVQETVDNI
>NZ_CP028264.1|WP_002833902.1|446589_446856_-|phosphocarrier-protein-HPr
MEKRDFHVIAETGIHARPATLLVQSASKFNSDIQLTYKDKSVNLKSIMGVMSLGVGQGADVTISADGDDEADAIAALEDTMKKEGLSD
>NZ_CP028264.1|WP_002833903.1|447001_447190_-|hypothetical-protein
MRDYLQLLNDLKDGSIKELKITAEEFQDFQPRFMEFPERKQVIGKADRGGIVVYHFERIKDK
>NZ_CP028264.1|WP_041526957.1|447394_449614_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLCQNCQKNEASIHLYTNVNGQRTEVNLCQNCYQLLKNQRNNNINRNGGARMAQDPFGFGNLDDIFRAMQGGNMGQPENLYGQQVPPTQPGGGNGSGGNPNNRGNGGSLLSQYGLNLTDLAKQGKIDPVIGRDSEIERVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQRIVEGSVPQKLVNKQIVRLDVVSLVQGTGIRGQFEQRMQQLMKEVQANKDMVVFIDEIHEIVGAGNAEGGMDAGNVLKPALARGDFQLVGATTLKEFRDIEKDAALARRLQPVQVDEPSEEEAIKILKGIQKKYEDYHHVHYTDDAIEAAVKLSKRYIQDRFLPDKAIDLLDEAGSKKNLTINIADPETIQKKIDEAEAQKKAALQSEDYEKAAYYRDQVSKLEKNKDGATSSEEQPTVTEEDMEKIIETKTDIPVGDLQKQEQEQLQNLSENLKDHVIGQNEAVDKISRAIRRNRIGLNGTGRPIGSFLFVGPTGVGKTELAKQLAQQLFGSKDSMIRFDMSEYMEPHSISKLIGSPPGYVGYEEAGQLTEQVRRHPYSLVLLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGTGDVQADVGFGAAAQGKTHSVLDKLGNYFKPEFLNRFDDIVEFQALTKENLMQIVDLMIADVNSMLATQGLHVDVTKPVEERLVDLGYNPKMGARPLRRVIQEQIEDRIADFYLDHPAEKQLNAKIKDDQIEITGAPKKD
>NZ_CP028264.1|WP_002833905.1|449668_450031_-|DUF1634-domain-containing-protein
MNAKKQEMQHVELVIGRVLQVGVYISALVILLGIGLWLFKNGSGYSGALPTRITPIFHGVLAFKPYAVLMFGIFLLILTPVLRVIVSIYAFAKEGDRLYVVITTIVLVILIIGMAIGYRG
>NZ_CP028264.1|WP_002833906.1|450030_450876_-|sulfite-exporter-TauE/SafE-family-protein
MASHLIILLLVGLMAGIFGAILGIGGGMIITPVLTVAMGLDIKYAIGASIIAVIATSSGATIAYLKDEMLNLRVAMFLEIATTVGAIVGAIMTGIFNSTVLFVLFGSFLVFSSWNMYRKLRRGGGEEGSTKNDRLANQLNLNGSYYDKALKKNVDYQVENVPGGSAVMFGAGLASGLLGIGSGAFKVMAMDNIMKMPLKPSSATSNLMMGVTAAASAMVYFFNGSIHADIAGPLAIGILFGAQLGSRIMQHLQPRWIRMIFIPVLLYMGLQMILKGFGVNI

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Crispr_ID: NZ_CP028264_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028264_2

1167094-1167208

Orphan

Consensus_repeat	Method
GTGGCGTTCAACAATTAGATTCAGGAAGTCA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP028264_2

>merge|NZ_CP028264|2|1167094-1167208|CRISPRCasFinder
GTGGCGTTCAACAATTAGATTCAGGAAGTCACACATTGAATAGCGGACTTCAAACTCTAAACGGAAGCACAGGAACCTTGATTAGTGGCGTTCAACAGTTAGATTCAGGAAGTCA

>NZ_CP028264|2|2|1167094-1167208|CRISPRCasFinder
GTGGCGTTCAACAATTAGATTCAGGAAGTCA	CACATTGAATAGCGGACTTCAAACTCTAAACGGAAGCACAGGAACCTTGATTA
GTGGCGTTCAACAGTTAGATTCAGGAAGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028264.1\|WP_011673871.1\|1172096_1173440_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP028264.1\|WP_011673868.1\|1176800_1178090_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_CP028264.1\|WP_002834184.1\|1175827_1176808_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
NZ_CP028264.1\|WP_011673869.1\|1174706_1175825_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|213783
NZ_CP028264.1\|WP_160211257.1\|1158322_1159435_+\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NZ_CP028264.1\|WP_011673875.1\|1168243_1168879_+\|DUF4767-domain-containing-protein	unknown	unknown	gnl\|CDD\|374270
NZ_CP028264.1\|WP_160211259.1\|1178092_1179499_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235798
NZ_CP028264.1\|WP_160211256.1\|1155356_1156559_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP028264.1\|WP_160211258.1\|1169136_1169790_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP028264.1\|WP_011673872.1\|1170699_1172082_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP028264.1\|WP_011673881.1\|1159577_1161383_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP028264.1\|WP_049752783.1\|1163725_1164229_+\|DUF1836-domain-containing-protein	unknown	unknown	gnl\|CDD\|378076
NZ_CP028264.1\|WP_011673873.1\|1169826_1170540_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP028264.1\|WP_011673877.1\|1164320_1164641_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP028264.1\|WP_011673885.1\|1156555_1157281_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP028264.1\|WP_011673880.1\|1161800_1162640_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_CP028264.1\|WP_011673887.1\|1153234_1154677_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP028264.1\|WP_011673879.1\|1162842_1163706_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP028264.1\|WP_011673870.1\|1173708_1174695_+\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|161920
NZ_CP028264.1\|WP_011673884.1\|1157332_1158169_-\|manganese-catalase	unknown	unknown	gnl\|CDD\|252986

Protein	Function_ID	Function_description	E-value
NZ_CP028264.1\|WP_011673871.1\|1172096_1173440_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.22632e-117
NZ_CP028264.1\|WP_011673868.1\|1176800_1178090_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	3.65771e-161
NZ_CP028264.1\|WP_002834184.1\|1175827_1176808_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	2.88289e-177
NZ_CP028264.1\|WP_011673869.1\|1174706_1175825_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	2.73298e-159
NZ_CP028264.1\|WP_160211257.1\|1158322_1159435_+\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	1.459e-45
NZ_CP028264.1\|WP_011673875.1\|1168243_1168879_+\|DUF4767-domain-containing-protein	gnl\|CDD\|374270	pfam15983, DUF4767, Domain of unknown function (DUF4767). This domain family is found in bacteria, and is approximately 140 amino acids in length. There is a single completely conserved residue Q that may be functionally important.	4.49139e-48
NZ_CP028264.1\|WP_160211259.1\|1178092_1179499_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP028264.1\|WP_160211256.1\|1155356_1156559_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.90143e-49
NZ_CP028264.1\|WP_160211258.1\|1169136_1169790_+\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	3.49208e-40
NZ_CP028264.1\|WP_011673872.1\|1170699_1172082_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	3.1049e-172
NZ_CP028264.1\|WP_011673881.1\|1159577_1161383_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	9.19183e-116
NZ_CP028264.1\|WP_049752783.1\|1163725_1164229_+\|DUF1836-domain-containing-protein	gnl\|CDD\|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	9.77839e-38
NZ_CP028264.1\|WP_011673873.1\|1169826_1170540_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.10343e-54
NZ_CP028264.1\|WP_011673877.1\|1164320_1164641_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	8.63436e-15
NZ_CP028264.1\|WP_011673885.1\|1156555_1157281_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.26463e-22
NZ_CP028264.1\|WP_011673880.1\|1161800_1162640_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	2.35429e-39
NZ_CP028264.1\|WP_011673887.1\|1153234_1154677_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.25243e-61
NZ_CP028264.1\|WP_011673879.1\|1162842_1163706_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.57368e-94
NZ_CP028264.1\|WP_011673870.1\|1173708_1174695_+\|lipoate--protein-ligase	gnl\|CDD\|161920	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus. [Protein fate, Protein modification and repair].	1.05582e-87
NZ_CP028264.1\|WP_011673884.1\|1157332_1158169_-\|manganese-catalase	gnl\|CDD\|252986	pfam05067, Mn_catalase, Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.	2.02993e-119

>NZ_CP028264.1|WP_011673877.1|1164320_1164641_+|winged-helix-turn-helix-transcriptional-regulator
MVKNNAALAAFKKNIPLLDALSDERRQQIMITLGESDAGLTVSELTKLIGLSQPAVSHHIKQLKDLNLVSVRKVGTSNIYQLTIKDALAQVQELIDILRKDKKLLR
>NZ_CP028264.1|WP_049752783.1|1163725_1164229_+|DUF1836-domain-containing-protein
MDSKQLENFAKMSLPKWDELPNIELHLDQVIDLANNYLRPLEVDLLTPTMMHNYLKQAVIIRPQGKLYGRMQLAAVIIIGCLKSILSLDEIKRGFEAELKLTSSRRAYNNFVNAFNEEVQRISQHGPRNLWNELLAETAVVSLQHSAIISMLTKKMAKDLLSDLEEK
>NZ_CP028264.1|WP_011673879.1|1162842_1163706_+|DegV-family-protein
MLKQKIAVLVDSCSDVPAEIANREYFEMIPMGVFFGEEEYQDRVNIEPDEFYQKLAKANPLPTTASPKGELITKALDNLSKRGFTQIIAVCISSGLSGTAQQVKIYAKNYPQLQIEVIDTKNIGIASGFAAVRASEVIEEGWEFDQIVEEVQRVANQTKVFFYVPTLKYLIAGGRIGRVAGLVGSIINLKPIISCDDEGIYYPVAKAHGEKKALKKMLQLVDDTLENAQKFNLAVVHGLNEGLMNQISTEFKNKYPNMGKFYNGDISPALGVHTGPGLIGIGVQIIK
>NZ_CP028264.1|WP_011673880.1|1161800_1162640_-|methyltransferase-domain-containing-protein
MNKIELATQFIQRHLHQFQCPICKSNFNEVQSGTLICNNQHSFNIAKKGSLFFLNNPVNTEYTNEMLTYRNQFLTAGFFNPMLEEVINNISGDLILDAGCGEGTTTKWMASHFDGDFVGLDISKPAINIAGSGIAPQPYPLFMVGDLAQLPFADQGLTSIVNILSPANYQEFDRTLATHGELIKVIPGNHYLSELRQLVYPDGEHATYDNAPVKNHFIEHYEHVEFSKISYKFPLNDKLFTALFNMTPLTWQAQDRKEAILQDGLKEITAEFEIGVVHK
>NZ_CP028264.1|WP_011673881.1|1159577_1161383_+|DUF2207-domain-containing-protein
MKFFTKRTFLLLVTMLTFGIFWNVKTVKADYEISQFRMQINVNKDGSANINQSVLYDFDDDYHGVYLTQDLRGTAGAELEGITVSNNKGTQNQVPINNSGENLTAKVESSKKQMKIRVYNAVSSDDQTKITYHYRINGVVTNYKDTAEINWKVIGSGWDVPLEDAQVTIKLPGKNVKGLHAWSHGEAAGYTTVDKAKGKVTLDIGDNPENTFVEAHMVFPTALTPDNKKIVNQNHLAAVKKQEYQLVKRENEAQARAQRIAAYAKITSAIISVLILIGMMGWLKKHGYHQYDIPTPMEHSFDVPSISPAEAEALFNKSKADTKGVSAEMLVLAAEGKLKFKQIPYGKRGKETTEIERQGKFNMSFVDRCLDRIGDGQQVTIKQINDYAKKDKKNNVATWYKEWQSEVDTNLARFKDTYNISYRHGLLGLAIATPILAFIVGIIGRFGEATNLYWIGGIVLTLIIEAWVLATWDKVSMYNEAGLQQYNQIRGFKQMMKDIAHFNTAEIGDLILWEQILPYATAFGLAEKVAKKLKTDFGTQLNENVPFYAYYYGINGMHVGIANSISTSISHSVSASSSGSSGGFSGGSSGGFGGGSGGGAF
>NZ_CP028264.1|WP_160211257.1|1158322_1159435_+|low-temperature-requirement-protein-A
MKNELLKKVSMIELFYDLVFVYMISQVTGLIHHLQNGVISPSALSIFTLVVIVSINSWMVQTVFNNRYGKSQWSNVILSFVDMAIVLYMSNAFSDTFDRHLIGFFIAAGLLSLTLAIQYLLVFVQTKNEYDRNIAMVFMRILFFRTACLLAGGVLAGRWGTTIALFGIITSWIIPAFTGKHTQKHPIIFSHLLERLTALIIIMFGETIVGISKYFTQNTFSIQSIMIFIIVVSLFFTYIVEFDHLIEEQRTHETGNLLIYLHYFILFGLSLVTVALDFTHESEANAIFSITCLYVGIALFYIGIVIASYYNKTTLKLENYVVVAFIVVTLMGYFTSMCFATFSIIAGVTALTTLINAVVITLSLVRRYER
>NZ_CP028264.1|WP_011673884.1|1157332_1158169_-|manganese-catalase
MFKHQKELQFEAKPDRPDPIVAKYLQELIGGQYGEMSVAMQYLFQGWSCRGEEKYKDMIMDIATEEIGHVEMLATMVARLLEDAPIADQQAAMQANPTVGAIISGMNPQHAIVAGLGPRPADSVGNPWSGAYIIASGNLLADFRANLNAESQGRLQVARIYEMIDDQGVKDLLSVLLARDSYHQNLWASAVKELEEKEGSMLVPTTFPRDKERKDIAYDFYNFSQGDESSTGPWASGEALDGEGEYHWYDEPKVEGSAPNLKPVSPKMYGTSENKSEI
>NZ_CP028264.1|WP_011673885.1|1156555_1157281_+|EAL-domain-containing-protein
MSELEQKLEGICFYEQPIFLIDAAEKEEKKVIGSELLLRKTGGENRFPAMLYKEYMRDDASNLVFCTWLVKNIIEIINDNPGIQYSFNLDPQQLLYDSTFEAMKGLIPYCDRVMIEVTESIPSNRDIDQYFNYSVRDQIKRIHEMGFSVAVDDVSSGMNSFNAVREYTQDIDRLKLSLIQLRNVEEGMITVTISLWKALAASTGIDLVIEGIDSLEVSKWLLENGLEKQQGYYFATPRKLK
>NZ_CP028264.1|WP_160211256.1|1155356_1156559_+|GGDEF-domain-containing-protein
MENTVMNTIIYWAKGFFSFNTVVIAAITVGVLFMLAAGTYVVEMNMDKTKTSSTLIEELLWGVGLTIAMVFLQNVFTHLYSTIASSELGWEYSTAQFVVLFYCLYIVHRKVVLWFNIILPMYVYGLGIVRGQIGFDIAPILATLVIILISYTIYQQNDTLIDENVKYYSTLIMFGLAWWFVLKDIHHLTIVDIICLTLEFLIAMSIVHFGNKKVRMIMKQYLNLMQEVDTDALTGVYNRNSFNKVVKGVFEFYSNNDAPLTMVMFDIDHFKQFNDQYGHQVGDKVLRLVADRFSYELVDRKAHGQLFRVGGEEFAIIFRGRTADDCEKIVRAIRDDLVKETIRVNNHDRVGIKVSIGISQLRDDDFDFQTFYKRVDDYLYQSKRNKRNSITVEGKVASLN
>NZ_CP028264.1|WP_011673887.1|1153234_1154677_-|MFS-transporter
MESTSFVNNPEIQKHRWWILIAVCSFTFMSTLDGSIVNIALPVMSSTMHVPMNVPMNKAEWVVSIYLIVICTLLLLFGKLGDAHGKIRVFKIGTMLFTIGSLLCGFNTGLTFLLIARIIQAVGAAMTMSTNNGIITEVFPAQERGRALGMIGSFVALGSIAGPGIGGLILAHFNWGYIFWINVPIGLLAILVGHKILPKDVIMTHQKIDKPGTILFAITMITLFVGISMGQEVGFTQPLILTMLFVALIALGTFLYVELHVETPILALYIFKNMRFTLSIICAFLIFITGFFFNVISPFYLENTLGLPANYAGYTLMIYPLINVVTAPVAGAISDKIGSEKLTFVGLLIILAAQLGYIVTNLATPLWLFMIFIGLNGLGNGIFQAPNNALVMGSVEPKDLGIAGGINSLARNLGMVVGISFATTVLFSAMSHIAGHSVTSVVPGHPEIFIAGMHVAFTVSFGVCLIATLITGYRLLRRQK
>NZ_CP028264.1|WP_011673875.1|1168243_1168879_+|DUF4767-domain-containing-protein
MRHMKKPEKRSFGSINSVVWVILALIVVIAGYKFFYPNHVTNTTSSSDRSSSTKVIKVEEGKSSSSKAQSSSKKTKKTEKKIWTDKQDSELAAFISSWQQTMGQTYTGTNANASVSFGGVSFPDYLSKGQIYVNQQEVSMQWTRSEKADSEYKVVAVYTGDQYMYLFTFHNGQPEVLVTSQSASNGMNFKVTENADLVAEFQKVAAENTDK
>NZ_CP028264.1|WP_160211258.1|1169136_1169790_+|nitroreductase
MEVKQAIQKRHSVRHFTDRKIDSKQLKEMIGIAQKAPSWVNSQPQKVYVAQGETLEAIRKQQQELAITGAKTNSDIPPMSRKRWSEQAQKNMAEWSHGIPAVLGDNWQETLGKEASQLYNAQAVVYLTLPKGYTPWSLFDLGAFSQNILLATTEQGIDSIVAYNFVKYPQILREELNIPSDEEIIVGIGLGFEDEQAQVNRITSKRMDTESILKIKK
>NZ_CP028264.1|WP_011673873.1|1169826_1170540_-|GntR-family-transcriptional-regulator
MYKYEKISQAIRKQIIEQKIKPGALLPDQNQLAKEFNTTRITIGKALQSLIIEGLIYSKRGAGTFVRKDAHLNDEFTNDVDKPLGTTSTHPHSKVTSKYIHLTARIANEVEKKNLLLEDGETVYVIKRTRFIEGKAYSYEQTIMPTKIATITEEVLKKSIYQYLEHEYHLELAGSHRQITARKVSEEDAKFLGEKLGDPILVISQTSYLVDGTPFEFSESRFPYRSSAVSADVNLLE
>NZ_CP028264.1|WP_011673872.1|1170699_1172082_+|glycoside-hydrolase-family-1-protein
MKGKLPDNFLWGNSTSSMQTEGGVHEGGKGPSVYDTYEATETTSNWDVAIDNYHHYEEDLDLMANQGMNCYRFQISWSRVNPTGDGDFNEEGIQYYDRLINDLLKRGIKPMICLYHFDMPLHLAEKYNGFMSRHVVDAFVRFGKKMVDCFSDRVKLWVTFNEQNLYSQTEAFHIAGYLKGDQTDEELQLIAHHVMTAHAQVANYVHETSDAQIGGMLAYVESYPKNCRPRDVYVARQIDEFLNRNLLEAWVHGHYSTEVTQYIKNHHFDIDFTEQDQIAFEKLKSDFISFSYYASNVVDSTKIPQGTMPNRYLDYGGVENPYLKATDWGWNIDPLGFRDVITKTYNEYGIPMFPIENGIGYREKFDGTEIQDDYRIEYHRDHIQAMIDAVVEDGVPVLGYLGWGLIDIPSSSGNMEKRYGMVYVNRGNHELRDMKRVPKKSYKWFKKVIETNGNDLENDL
>NZ_CP028264.1|WP_011673871.1|1172096_1173440_+|PTS-sugar-transporter-subunit-IIC
MGSSNKESVNDKMQNSKFIAKFTEISVKVGNWVYLRSLRDAFAVILPMFIVAGIGVLLNNVVFTWFLSGDMLTKFQVIGNAIVNGTLNVAGILVAPMIGYSLARNKGFNNPIAAAAMSLASIFILMPGSIQLGTVASAGAKMATVTGGLSYLNTGTQGMFGGIFVGLIATGLFIKLASIKKLQIHLGENVPPAVSASFSVLIPAILLMSFFAIIAALLAGFFNTDLINLIKTWIQEPLRGFNTSIVGYCVIYTLANFLFGLGIHQTVLSGALLDPLVLVNMNENMTAYAHHQAIPNIITTSFVSNYTLIGGSGSTIALIIAILIFSKAKSSRQIAGLSLAPGIFNINEPMIFGFPIVFNLPLIIPFVLFPVVGSLMGYFATLWGWVSRTVVLVPWTTPPLIGPYLSTAGDWRAVILQILIIVVGVFLYLPFLKISERVSEIQAEENL
>NZ_CP028264.1|WP_011673870.1|1173708_1174695_+|lipoate--protein-ligase
MRYVTYMGTDAYTNIATDTWLLNNLNAKEPVFALWQNNNAIIVGQNQNTFGEVNQDFVDEHQIEVVRRVTGGGAVYHDLGNLNFTLFVPIESAANVDFKKFSEPVLRALHTLGIDAEASGRNDLLVNGKKISGVAQRYAKGYLMHHGTLLFDSNVDTMVRSLNVADEKFISKAAKSVRSRVGMIKDAAPKGLTLQDFWDAVQYELTDHGKDQEIVLTPQQKQEIIQLTADKFSTWDWNYGRSPEFNFKNHAKYDGGIIDVQVQAEGGTIRDINFTGDFLGLRDWREIKDQFIGLPFETVEIKPVFERNHEGRYFGNITDDELIKLFEA
>NZ_CP028264.1|WP_011673869.1|1174706_1175825_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MAVKDDNKQVLDFNLQMEKQTDSFPMLQVLNNDGEIVDEDALKEAGLSDDQLVELMKQMVFSRVLHERSTKLAKQGRLGFYAPTIGEEASQIASNYAFEKGDWLFPGYRDIPQLVMKGWPIYKAFLWSRGHYEGNEFDDVNGWMPQIIIGAQYVEAAGAALGLKMRKQPNVAYAYTGDGGTSQGDFYEGMNFAGAYNAPAVFFSQNNEYAISTPRKLQTKAPHLAAKGWAAGLPSLVVDGMDPIAMYLASKKARQWAVDGNGPVFIETITNRLGAHSMSGDDPLRYRTQEEIDEWTKKEPLIRFRKYLEGLGFWSEEIENDWTEVVNEQIDDGVKQADGIDKQKISDFIEQTLEVPGQAAQEQINKFRGEGK
>NZ_CP028264.1|WP_002834184.1|1175827_1176808_+|alpha-ketoacid-dehydrogenase-subunit-beta
MAQKTYIQAITEAQDLALANDENVVIFGEDVGKNGGVFRATDGLQAKYGEDRVFNTPLAESGIGGMAIGMTTQNYRPIMEIQFFGFVYEVMDSLAGQMARGRFRFHGTRTFPIVVRSPYGGGTKTPEMHADSLEGLVAQTPGLRVVMPATPADAKGLLLSAVESNDPVIFLENLRLYRSIRGDVPEGYYTTPLDKANVIREGKDVSIITYGGMVHTSLAAAEELAKDGIDAEVVDLRTVSPLDLDTIGESVEKTGRVVVAQEAQRQAGIGAMVMSEISERFIMSLKAPIGRVAAPDSVYPFALAENEWLPKADDIIEKVKEVVNFD
>NZ_CP028264.1|WP_011673868.1|1176800_1178090_+|2-oxo-acid-dehydrogenase-subunit-E2
MTEIFKMPDIGEGMAEGEIANWLVKVGDTIKEEDAVAEVQNDKLLQEILSPYGGKITKLFVEAGTVVKVGEPLIEFDGDGSGAGAESEVPKETPASTEPEPESSAPVDQTAPEVTKVGAEYTSNGQLLAMPSVREYARKNDIDLTQVPATGRHGHITMADVENFKASPAPAASVPETESEKAPSAPVTPAAPAEVKAGRVPLSPVRKVIAKTLTNQVQTIPHVTIMDEVEVSKLMDLRNQFKEQAKQKGYKLTYMPFIAKALAGAAHKYPELSAMVDIEKQEIVYYEDTNVSFAVDTDNGLFVPNVKNVKSKSIMEVAQEIDDMAIRGRAGDLKPNELKGGTVTITNIGSESGSGFFTPIINPGESAILGIGRIRKTPVVNEDGELAVGNTLKLSLSFDHRLIDGALAQKIMNELKALLSNPAYMLMEV
>NZ_CP028264.1|WP_160211259.1|1178092_1179499_+|dihydrolipoyl-dehydrogenase
MVVGTQAINVDTLIIGSGPGGYVAAIRAAELGQKVVIVERDYIGGVCLNVGCIPSKALIQAGHLYSTLQHGNPFGVSVSESKIDFTKTQEWKQNQVVNKLTGGVELLLKKHKVAIVRGEAYFNDNETVNVINGDDSHVYRFKRALIATGSRPVEIPHFKFSGRVIDSTGALNLKDVPEHLIIIGGGVIGAELAGAYMNLGSKITIIEGLDHILNGFDGELIQPVLNNFKKNGVEIVTEATAVEANQTDKDVTVTYEADGTTKTVTGDYCLVSVGRRPNTDQLGLNNTNIKLSKRGLIEVNDSMQTSVKHIYAIGDVVAGPALAHKASFEAKVAAAAMGGEDAHDTHYVLPAVAYTNIELATVGETPQSIAEKKLDAKSSKFPFAASGRAMTMDQTEGFIRLITDNPTGGIIGAQIVGPEASNLISELTLAIENGLTIKDIELTIHPHPTLGEEIMDAAELAAGLPIHV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

33277 : 42895

Staphylococcus_phage(37.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002833201.1\|33277_33748_+	nucleoside deoxyribosyltransferase	A0A1G5S9Z4	Enterococcus_phage	3.8e-16	40.1
WP_002833200.1\|33802_34687_-	YitT family protein	M1Q1P6	Streptococcus_phage	2.1e-52	38.1
WP_041526969.1\|34940_36149_+\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	3.5e-34	40.0
WP_160211131.1\|36151_38029_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.8e-51	30.5
WP_011673474.1\|38041_38992_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	3.4e-117	62.7
WP_099046115.1\|39029_39506_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	3.8e-24	38.8
WP_011673472.1\|39627_41079_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_011673471.1\|41075_41813_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-33	39.9
WP_011673470.1\|42049_42895_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.0e-16	35.2

DBSCAN-SWA_2

74216 : 143342

Lactobacillus_phage(69.23%)

integrase,holin,tail,protease,terminase,portal,head,capsid

attL 73245:73262|attR 142773:142790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
73245:73262	attL	NA	NA	NA	NA
WP_011673446.1\|74216_75290_-\|integrase	site-specific integrase	Q9ZXG6	Leuconostoc_phage	6.8e-45	36.0
WP_011673445.1\|75514_75712_-	hypothetical protein	NA	NA	NA	NA
WP_160211133.1\|75994_76213_-	hypothetical protein	NA	NA	NA	NA
WP_160211134.1\|76215_76950_-	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	6.9e-41	54.8
WP_160211135.1\|76957_77533_-	hypothetical protein	NA	NA	NA	NA
WP_160211136.1\|77597_78005_-	ImmA/IrrE family metallo-endopeptidase	A0A0M7RF74	Lactobacillus_phage	6.8e-06	32.3
WP_160211276.1\|78013_78358_-	helix-turn-helix transcriptional regulator	D2IZV9	Enterococcus_phage	2.9e-18	37.7
WP_160211137.1\|78628_78844_+	hypothetical protein	NA	NA	NA	NA
WP_160211138.1\|78926_79712_+	phage antirepressor	A0A1Q1PVU2	Staphylococcus_phage	1.6e-80	55.8
WP_160211139.1\|79886_80090_-	hypothetical protein	NA	NA	NA	NA
WP_160211140.1\|80368_80590_-	hypothetical protein	NA	NA	NA	NA
WP_160211141.1\|80916_81126_+	hypothetical protein	NA	NA	NA	NA
WP_160211142.1\|81224_81452_+	hypothetical protein	A0A182BQC3	Lactococcus_phage	3.4e-15	61.6
WP_160211143.1\|81546_82092_-	hypothetical protein	NA	NA	NA	NA
WP_160211144.1\|82381_83014_+	ERF superfamily protein	NA	NA	NA	NA
WP_160211145.1\|83029_83428_+	single-stranded DNA-binding protein	D6PSU2	Lactobacillus_phage	5.6e-37	58.3
WP_160211146.1\|83449_84193_+	DNA replication protein	A7DYC7	Streptococcus_phage	2.7e-69	54.5
WP_160211147.1\|84173_84992_+	ATP-binding protein	O03914	Lactobacillus_phage	3.6e-62	50.0
WP_160211148.1\|85108_85519_+	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	8.6e-41	58.1
WP_002833142.1\|85515_85734_+	hypothetical protein	NA	NA	NA	NA
WP_160211149.1\|85747_85885_+	hypothetical protein	NA	NA	NA	NA
WP_002833141.1\|85871_86066_+	hypothetical protein	NA	NA	NA	NA
WP_160211150.1\|86065_86581_+	hypothetical protein	NA	NA	NA	NA
WP_160211151.1\|86573_86819_+	hypothetical protein	O03923	Lactobacillus_phage	2.6e-13	43.8
WP_160211152.1\|86811_87150_+	hypothetical protein	NA	NA	NA	NA
WP_160211153.1\|87189_87471_+	hypothetical protein	NA	NA	NA	NA
WP_160211154.1\|87474_87666_+	hypothetical protein	NA	NA	NA	NA
WP_160211155.1\|87671_88034_+	hypothetical protein	NA	NA	NA	NA
WP_011673250.1\|88109_88568_+	DNA-directed RNA polymerase sigma-70 factor	O03925	Lactobacillus_phage	2.2e-13	34.8
WP_160211156.1\|88844_90023_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_160211157.1\|90019_90880_+	DNA processing protein DprA	S6BFL3	Thermus_phage	8.2e-17	35.9
WP_160211277.1\|91182_91650_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	4.3e-81	92.9
WP_160211158.1\|91846_92305_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	1.0e-79	95.4
WP_011673412.1\|94262_94457_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	4.8e-26	96.9
WP_160211159.1\|94459_95623_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	2.5e-210	94.0
WP_160211278.1\|95600_96344_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	1.3e-124	94.7
WP_160211160.1\|96343_97576_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	5.0e-209	91.2
WP_011673408.1\|97649_97982_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	4.3e-43	83.3
WP_011673407.1\|97971_98319_+\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	5.4e-44	73.9
WP_011673406.1\|98321_98729_+	hypothetical protein	A0A2P0ZLE6	Lactobacillus_phage	7.9e-63	89.4
WP_011673405.1\|98728_99109_+	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	4.6e-57	84.1
WP_011673404.1\|99124_99778_+\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	5.5e-106	90.3
WP_011673403.1\|99851_100226_+	hypothetical protein	A0A2P0ZLH4	Lactobacillus_phage	1.4e-58	95.2
WP_011673402.1\|100270_100456_+	hypothetical protein	NA	NA	NA	NA
WP_011673401.1\|100487_105248_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	63.7
WP_011673400.1\|105325_107092_+\|tail	phage tail protein	E9LUR2	Lactobacillus_phage	3.6e-229	64.9
WP_011673399.1\|107112_109503_+	hypothetical protein	E9LUR3	Lactobacillus_phage	0.0e+00	69.5
WP_160211161.1\|109519_112708_+	hypothetical protein	A0A1S5RCP2	Lactobacillus_phage	2.2e-27	48.6
WP_011673397.1\|112700_112928_+	hypothetical protein	NA	NA	NA	NA
WP_011673396.1\|112920_113124_+	hypothetical protein	NA	NA	NA	NA
WP_011673395.1\|113136_113385_+	hypothetical protein	NA	NA	NA	NA
WP_011673394.1\|113418_113778_+	hypothetical protein	E9LUR7	Lactobacillus_phage	6.6e-45	79.0
WP_041527003.1\|113822_114953_+	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	6.3e-33	61.3
WP_011673392.1\|114952_115216_+\|holin	holin	E9LUR9	Lactobacillus_phage	6.1e-32	85.1
WP_011673391.1\|115225_115603_+\|holin	holin	A0A2K9VCG4	Lactobacillus_phage	7.4e-23	82.5
WP_011673390.1\|115720_115963_+	hypothetical protein	NA	NA	NA	NA
WP_011673389.1\|117192_117984_+	hypothetical protein	NA	NA	NA	NA
WP_011673388.1\|118139_118793_+	WxL domain-containing protein	NA	NA	NA	NA
WP_160211162.1\|118779_119838_+	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA
WP_011673386.1\|119839_120178_+	hypothetical protein	NA	NA	NA	NA
WP_011673385.1\|120164_122210_+	hypothetical protein	NA	NA	NA	NA
WP_002833100.1\|122493_124608_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.5e-117	39.3
WP_011673384.1\|124875_125202_+	hypothetical protein	NA	NA	NA	NA
WP_011673383.1\|125620_127651_+	hypothetical protein	NA	NA	NA	NA
WP_011673382.1\|127852_129187_+	hypothetical protein	NA	NA	NA	NA
WP_011673381.1\|129982_130846_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_011673380.1\|130832_131600_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	2.3e-26	42.6
WP_011673379.1\|131640_132501_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	1.5e-26	32.8
WP_011673378.1\|132600_133554_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_011673377.1\|133697_135041_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_011673376.1\|135066_137319_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_011673375.1\|137334_137994_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_002833092.1\|138303_140376_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.3e-92	34.8
WP_002833090.1\|140447_141353_+	tyrosine recombinase XerC	A0A1I9SC88	Mycobacterium_phage	6.6e-17	29.7
WP_002833088.1\|141371_141926_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_041526965.1\|141926_143342_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IEP8	Erwinia_phage	8.7e-32	25.3
142773:142790	attR	NA	NA	NA	NA

DBSCAN-SWA_3

203889 : 210245

Lactobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160211166.1\|203889_204411_-	DUF4373 domain-containing protein	A0A0P0HRQ2	Lactobacillus_phage	1.2e-42	56.5
WP_011673331.1\|204534_205275_-	3-oxoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.8e-17	30.5
WP_011673330.1\|205275_205497_-	DUF2829 domain-containing protein	G3MBC9	Bacillus_virus	2.0e-07	33.3
WP_011673329.1\|205513_205996_-	QueT transporter family protein	E7DN70	Pneumococcus_phage	4.9e-11	35.0
WP_011673327.1\|206232_206703_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_002833626.1\|206831_207059_+	DUF378 domain-containing protein	NA	NA	NA	NA
WP_002833625.1\|207164_208289_-	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	1.3e-22	33.2
WP_011673326.1\|208385_210245_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	5.3e-138	47.2

DBSCAN-SWA_4

328775 : 425973

111

Lactobacillus_phage(52.08%)

integrase,holin,tail,protease,terminase,portal,head,tRNA,capsid

attL 374742:374759|attR 416410:416427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002833798.1\|328775_329504_-\|holin	antiholin	NA	NA	NA	NA
WP_002833797.1\|329505_329910_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_011673207.1\|330138_330870_-	response regulator	A0A2R2ZGH8	Clostridioides_phage	8.2e-10	27.0
WP_011673206.1\|330875_332615_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.1e-59	31.1
WP_002833794.1\|332767_334714_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	4.9e-94	32.6
WP_002833793.1\|335006_335936_-	primosomal protein DnaI	S5MU12	Brevibacillus_phage	3.2e-27	37.3
WP_002833792.1\|335938_337309_-	replication initiation and membrane attachment family protein	NA	NA	NA	NA
WP_002833791.1\|337309_337783_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_002833790.1\|337814_338405_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_002833789.1\|338409_339237_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	3.8e-19	28.5
WP_011673205.1\|339249_341913_-	DNA polymerase I	A0A142F1Q9	Bacillus_phage	3.4e-61	29.9
WP_002833786.1\|342812_344123_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_160211173.1\|344164_346081_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	3.8e-91	47.5
WP_002833784.1\|346094_346727_-\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_011673203.1\|346809_347136_+	membrane protein	NA	NA	NA	NA
WP_011673202.1\|347192_347831_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_002833780.1\|347846_349046_-	ABC transporter permease	NA	NA	NA	NA
WP_002833779.1\|349038_349776_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.0e-20	29.4
WP_002833778.1\|349913_350345_+	HIT family protein	D7NW73	Streptomyces_phage	1.7e-07	32.9
WP_002833777.1\|350347_350713_+	hypothetical protein	NA	NA	NA	NA
WP_011673201.1\|350819_351707_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_029257856.1\|351747_352695_-	HD domain-containing protein	NA	NA	NA	NA
WP_011673199.1\|352709_355286_-	AAA family ATPase	NA	NA	NA	NA
WP_160211174.1\|355275_356499_-	DNA repair exonuclease	NA	NA	NA	NA
WP_002833772.1\|356613_356958_-	YlbF family regulator	NA	NA	NA	NA
WP_041526990.1\|357022_359170_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011673196.1\|359278_359737_-	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_011673195.1\|359759_360431_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011673194.1\|360696_362385_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	4.6e-80	33.3
WP_011673193.1\|362645_363491_-	aldo/keto reductase	NA	NA	NA	NA
WP_002833766.1\|363699_364512_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_002833765.1\|364589_364874_+	hypothetical protein	NA	NA	NA	NA
WP_002833764.1\|365149_366595_-	amino acid permease	NA	NA	NA	NA
WP_011673192.1\|366726_367539_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_002833762.1\|367608_368316_-	amino acid racemase	NA	NA	NA	NA
WP_011673191.1\|368321_369578_-	carboxylate--amine ligase	NA	NA	NA	NA
WP_002833760.1\|369577_371101_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_002833758.1\|371116_372997_-	asparagine synthase (glutamine-hydrolyzing)	R4TIC1	Phaeocystis_globosa_virus	5.9e-28	28.1
WP_011673190.1\|373333_373843_+	membrane protein	NA	NA	NA	NA
WP_002833756.1\|373922_374561_-	carbonic anhydrase family protein	NA	NA	NA	NA
374742:374759	attL	NA	NA	NA	NA
WP_160211175.1\|375153_376044_-	hypothetical protein	NA	NA	NA	NA
WP_160211176.1\|376046_376457_-	DUF4065 domain-containing protein	A0A0R6PCI9	Moraxella_phage	1.4e-06	26.0
WP_160211177.1\|376735_377860_-	N-acetylmuramoyl-L-alanine amidase	A0A0P0I386	Lactobacillus_phage	3.7e-94	51.4
WP_160211178.1\|377843_378095_-\|holin	holin	NA	NA	NA	NA
WP_160211179.1\|378428_378560_-	XkdX family protein	NA	NA	NA	NA
WP_160211180.1\|378559_378877_-	DUF2977 domain-containing protein	NA	NA	NA	NA
WP_160211181.1\|378877_379618_-	hypothetical protein	NA	NA	NA	NA
WP_160211182.1\|379629_381459_-	hypothetical protein	O03968	Lactobacillus_phage	2.2e-59	32.3
WP_160211183.1\|381460_381787_-	hypothetical protein	NA	NA	NA	NA
WP_160211184.1\|381783_382554_-	hypothetical protein	D2KRC0	Lactobacillus_phage	6.0e-19	29.2
WP_160211185.1\|382537_384511_-	hypothetical protein	E9LUJ4	Lactobacillus_phage	4.2e-101	34.4
WP_160211186.1\|384507_385344_-\|tail	phage tail family protein	A0A0M7RF73	Lactobacillus_phage	5.8e-44	35.8
WP_160211279.1\|385355_389342_-\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	8.4e-157	53.9
WP_146419265.1\|389848_390061_-\|tail	phage tail tape measure protein	A0A2P0ZLD9	Lactobacillus_phage	8.4e-16	60.9
WP_160211187.1\|390102_390414_-	hypothetical protein	NA	NA	NA	NA
WP_160211188.1\|390471_390765_-	collagen-like protein	NA	NA	NA	NA
WP_160211189.1\|390777_391431_-\|tail	phage tail protein	A0A2P0ZLF5	Lactobacillus_phage	1.4e-72	69.2
WP_160211190.1\|391443_391857_-	hypothetical protein	A0A2P0ZLE4	Lactobacillus_phage	4.6e-26	44.3
WP_160211191.1\|391853_392261_-	hypothetical protein	A0A2P0ZLD7	Lactobacillus_phage	1.6e-39	60.0
WP_160211192.1\|392257_392644_-	hypothetical protein	A0A2P0ZLD1	Lactobacillus_phage	1.1e-24	42.6
WP_005917217.1\|392603_392912_-\|head,tail	phage gp6-like head-tail connector protein	A0A059T7R0	Listeria_phage	1.4e-14	48.9
WP_005917219.1\|393048_394224_-\|capsid	phage major capsid protein	A0A2P0ZLD6	Lactobacillus_phage	2.2e-137	64.8
WP_159251215.1\|394248_394989_-\|protease	Clp protease ClpP	A0A059T5F2	Listeria_phage	1.6e-40	38.3
WP_160211193.1\|394972_396124_-\|portal	phage portal protein	A0A2P0ZLC9	Lactobacillus_phage	3.5e-124	57.4
WP_160211194.1\|396142_397825_-\|terminase	terminase large subunit	A0A2P0ZLE5	Lactobacillus_phage	1.6e-197	59.6
WP_159251217.1\|397821_398154_-	hypothetical protein	NA	NA	NA	NA
WP_160211195.1\|398263_398485_-	hypothetical protein	A0A2P0ZLD2	Lactobacillus_phage	1.6e-17	67.7
WP_160211280.1\|398601_398928_-	HNH endonuclease	A0A2P0ZLC6	Lactobacillus_phage	1.2e-26	62.1
WP_160211196.1\|398912_399320_-	hypothetical protein	NA	NA	NA	NA
WP_160211197.1\|399319_399481_-	hypothetical protein	NA	NA	NA	NA
WP_160211198.1\|399483_399765_-	hypothetical protein	NA	NA	NA	NA
WP_160211199.1\|399999_400761_-	hypothetical protein	NA	NA	NA	NA
WP_160211200.1\|401078_401495_-	RNA polymerase subunit sigma-70	O03925	Lactobacillus_phage	4.7e-10	30.2
WP_160211201.1\|401570_401930_-	hypothetical protein	NA	NA	NA	NA
WP_160211202.1\|401941_402109_-	hypothetical protein	NA	NA	NA	NA
WP_160211203.1\|402109_402406_-	hypothetical protein	A0A0A1EL18	Lactobacillus_phage	6.4e-14	42.7
WP_160211204.1\|402399_402714_-	hypothetical protein	A8ASM5	Listeria_phage	2.6e-13	48.3
WP_160211205.1\|402817_402994_-	hypothetical protein	NA	NA	NA	NA
WP_160211206.1\|402986_403232_-	hypothetical protein	O03923	Lactobacillus_phage	7.0e-14	46.6
WP_160211207.1\|403224_403776_-	DUF1642 domain-containing protein	A0A126GGJ0	Streptococcus_phage	1.1e-09	34.8
WP_160211208.1\|403776_404070_-	hypothetical protein	NA	NA	NA	NA
WP_160211209.1\|404069_404525_-	hypothetical protein	A0A2K9VCS9	Lactobacillus_phage	1.1e-23	44.1
WP_002833141.1\|404709_404904_-	hypothetical protein	NA	NA	NA	NA
WP_155115371.1\|404890_405028_-	hypothetical protein	NA	NA	NA	NA
WP_160211210.1\|405041_405260_-	hypothetical protein	NA	NA	NA	NA
WP_160211211.1\|405264_405666_-	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	3.5e-31	50.0
WP_160211212.1\|405662_406079_-	hypothetical protein	NA	NA	NA	NA
WP_160211213.1\|406086_407313_-	DNA helicase	A0A0P0IXJ2	Lactobacillus_phage	3.5e-61	36.7
WP_160211214.1\|408218_408740_-	DUF669 domain-containing protein	A0A1P8VVN0	Streptococcus_phage	1.5e-29	46.6
WP_160211215.1\|408739_409507_-	AAA family ATPase	A8YQL5	Lactobacillus_phage	6.7e-63	52.6
WP_160211216.1\|409506_409968_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_160211217.1\|410189_410807_+	hypothetical protein	NA	NA	NA	NA
WP_160211218.1\|410803_410977_-	hypothetical protein	NA	NA	NA	NA
WP_128887006.1\|411074_411377_-	DUF771 domain-containing protein	Q4ZD49	Staphylococcus_phage	1.5e-05	30.4
WP_160211219.1\|411393_412221_-	ORF6N domain-containing protein	Q8SBM8	Clostridium_phage	4.1e-50	41.4
WP_160211220.1\|412279_412669_+	DUF2513 domain-containing protein	A0A097PAT1	Streptococcus_pyogenes_phage	1.1e-21	46.4
WP_160211221.1\|413098_413287_-	hypothetical protein	NA	NA	NA	NA
WP_160211222.1\|413551_413893_+	helix-turn-helix transcriptional regulator	A0A097QQ00	Enterococcus_phage	4.2e-17	42.7
WP_160211223.1\|413896_414334_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	8.1e-13	36.6
WP_160211224.1\|414394_415051_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_160211225.1\|415201_416350_+\|integrase	site-specific integrase	E9LUS1	Lactobacillus_phage	6.5e-94	47.7
WP_002833755.1\|416666_416891_+	hypothetical protein	NA	NA	NA	NA
416410:416427	attR	NA	NA	NA	NA
WP_011673189.1\|416990_417269_-	hypothetical protein	NA	NA	NA	NA
WP_002833753.1\|417269_417485_-	hypothetical protein	NA	NA	NA	NA
WP_002833752.1\|417686_418508_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_002833751.1\|418752_419412_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	6.4e-46	45.5
WP_002833750.1\|419489_419942_-	universal stress protein	NA	NA	NA	NA
WP_002833749.1\|420076_420916_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_002833748.1\|420938_421658_-	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA
WP_011673187.1\|421666_423352_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_002833746.1\|423555_425973_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	67.9

DBSCAN-SWA_5

602568 : 610187

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002834094.1\|602568_603327_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-18	30.5
WP_011673074.1\|603340_604141_-	phosphate ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.4e-09	42.0
WP_002834456.1\|604158_605046_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011673073.1\|605046_605955_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_002834458.1\|605954_606836_-	phosphate ABC transporter substrate-binding protein PstS family protein	H6WG65	Cyanophage	9.3e-08	25.9
WP_002834459.1\|606998_608384_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	6.3e-27	33.3
WP_002834460.1\|608355_609060_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.9e-38	37.3
WP_147628902.1\|609070_610187_-	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	1.9e-05	47.1

DBSCAN-SWA_6

1223623 : 1234469

Bacillus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011673833.1\|1223623_1224475_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	1.6e-12	35.6
WP_002834122.1\|1224488_1224674_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_002834120.1\|1224890_1225997_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_011673832.1\|1226025_1226730_+	DUF1129 domain-containing protein	NA	NA	NA	NA
WP_011673831.1\|1226751_1227894_+	guanosine monophosphate reductase	A0A1V0SHK8	Klosneuvirus	2.4e-64	34.0
WP_160211262.1\|1228024_1228522_+	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2P1EI66	Megavirus	1.3e-14	38.1
WP_002834114.1\|1228604_1229294_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.7e-37	37.3
WP_011673829.1\|1229305_1230442_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.8e-25	25.8
WP_011673828.1\|1230622_1231879_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.8e-07	23.3
WP_002834111.1\|1232010_1232799_+	branched-chain amino acid ABC transporter	NA	NA	NA	NA
WP_002834110.1\|1232819_1233152_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_011673827.1\|1233293_1234469_-	class I SAM-dependent methyltransferase	A0A2K9L4K8	Tupanvirus	4.8e-44	33.3

DBSCAN-SWA_7

1463465 : 1472333

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011673697.1\|1463465_1465631_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	3.9e-249	59.9
WP_011673696.1\|1465732_1465963_-	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	8.0e-12	48.1
WP_011673695.1\|1466174_1466780_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_011673694.1\|1466772_1467258_+	nucleoside deaminase	A0A2H4PQS8	Staphylococcus_phage	1.8e-05	31.6
WP_011673693.1\|1467470_1469216_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.8e-56	48.4
WP_002833269.1\|1469231_1469546_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_002833270.1\|1469572_1470172_+	recombination protein RecR	NA	NA	NA	NA
WP_002833271.1\|1470336_1470966_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.0e-52	52.7
WP_002833272.1\|1470981_1471317_+	hypothetical protein	NA	NA	NA	NA
WP_011673692.1\|1471316_1472333_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-33	30.6

DBSCAN-SWA_8

1481693 : 1490257

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011673684.1\|1481693_1482176_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-20	42.9
WP_011673683.1\|1482159_1483299_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_011673682.1\|1483298_1484027_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	9.6e-43	43.4
WP_011673681.1\|1484019_1484274_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_011673680.1\|1484276_1484951_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_041526973.1\|1484968_1487176_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.7e-147	41.6
WP_011673678.1\|1487160_1488630_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-56	32.3
WP_011673677.1\|1488629_1489679_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D8KLC2	Synechococcus_phage	5.2e-58	40.2
WP_011673676.1\|1489675_1490257_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-22	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028264

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection