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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP028270 Pediococcus pentosaceus strain SRCM102740 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP028269 Pediococcus pentosaceus strain SRCM102740 chromosome, complete genome 2 crisprs cas3,DinG,csa3,DEDDh,WYL 0 0 125 0

Results visualization

1. NZ_CP028269
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028269_1 792960-793074 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP028269_2 1525117-1525222 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 67802 75 Lactobacillus_phage(71.05%) integrase,protease,capsid,portal,tail,holin,terminase,head attL 12847:12862|attR 70239:70254
DBSCAN-SWA_2 75045 : 75951 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 82822 : 83248 1 Anguillid_herpesvirus(100.0%) NA NA
DBSCAN-SWA_4 93857 : 110862 18 Staphylococcus_phage(27.27%) tRNA NA
DBSCAN-SWA_5 115210 : 116635 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_6 120055 : 137096 13 Virus_Rctr41k(14.29%) NA NA
DBSCAN-SWA_7 143136 : 161361 18 Rhizobium_phage(12.5%) tRNA NA
DBSCAN-SWA_8 164676 : 167518 2 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_9 172997 : 180586 7 Planktothrix_phage(25.0%) protease NA
DBSCAN-SWA_10 187495 : 199293 14 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_11 204511 : 208002 2 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_12 211058 : 216859 6 unidentified_phage(33.33%) tRNA NA
DBSCAN-SWA_13 230950 : 233302 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_14 238703 : 241031 3 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_15 255701 : 256310 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_16 264317 : 273837 10 Leuconostoc_phage(14.29%) NA NA
DBSCAN-SWA_17 307900 : 309193 1 Bandra_megavirus(100.0%) NA NA
DBSCAN-SWA_18 312849 : 313485 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_19 318165 : 324080 4 Catovirus(50.0%) tRNA NA
DBSCAN-SWA_20 327432 : 328710 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_21 335775 : 341823 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_22 351511 : 357817 7 Planktothrix_phage(25.0%) NA NA
DBSCAN-SWA_23 362211 : 365824 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_24 369442 : 371376 2 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_25 376246 : 380248 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_26 385862 : 386762 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_27 389825 : 392313 2 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_28 396787 : 401558 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_29 405498 : 408351 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_30 414120 : 415808 2 Anomala_cuprea_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_31 430172 : 432266 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_32 435374 : 449055 6 uncultured_Mediterranean_phage(40.0%) protease,tRNA NA
DBSCAN-SWA_33 456244 : 464494 10 Lactococcus_phage(25.0%) NA NA
DBSCAN-SWA_34 468360 : 504594 43 Synechococcus_phage(15.0%) tRNA NA
DBSCAN-SWA_35 508949 : 512055 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_36 524034 : 539313 13 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_37 545197 : 551491 5 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_38 563693 : 567541 5 Lactobacillus_phage(33.33%) NA NA
DBSCAN-SWA_39 571108 : 571690 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_40 576985 : 581321 4 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_41 594630 : 601327 7 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_42 608889 : 615775 5 Pandoravirus(33.33%) NA NA
DBSCAN-SWA_43 623494 : 627751 4 Oenococcus_phage(33.33%) NA NA
DBSCAN-SWA_44 642825 : 643545 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_45 655734 : 656910 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_46 664627 : 687838 20 Bacillus_virus(22.22%) NA NA
DBSCAN-SWA_47 693397 : 697437 6 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_48 700783 : 705899 6 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_49 711503 : 712502 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_50 716556 : 721979 5 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_51 725698 : 737895 14 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_52 742917 : 756241 15 Streptomyces_phage(16.67%) NA NA
DBSCAN-SWA_53 776563 : 777070 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 780668 : 786459 5 Erysipelothrix_phage(33.33%) NA NA
DBSCAN-SWA_55 803608 : 814104 8 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_56 828589 : 830920 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_57 834286 : 837650 4 Staphylococcus_phage(75.0%) NA NA
DBSCAN-SWA_58 846753 : 850461 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_59 854905 : 857885 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_60 861424 : 861823 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_61 870709 : 890961 19 Bacillus_virus(22.22%) NA NA
DBSCAN-SWA_62 894384 : 896039 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_63 904485 : 908340 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_64 915032 : 918746 5 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_65 922592 : 923345 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_66 943155 : 943887 1 Mycobacterium_virus(100.0%) NA NA
DBSCAN-SWA_67 950592 : 953356 3 Mollivirus(50.0%) NA NA
DBSCAN-SWA_68 962074 : 964249 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_69 967455 : 969267 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 975923 : 978792 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_71 983235 : 984672 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_72 1019809 : 1023759 3 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_73 1043211 : 1050750 7 Trichoplusia_ni_ascovirus(33.33%) NA NA
DBSCAN-SWA_74 1067761 : 1068817 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_75 1082583 : 1083705 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_76 1095486 : 1098725 3 Acanthocystis_turfacea_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_77 1112448 : 1116834 3 Herpes_simplex_virus(50.0%) NA NA
DBSCAN-SWA_78 1121397 : 1121982 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_79 1125179 : 1126829 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_80 1145292 : 1146546 1 Cronobacter_phage(100.0%) tRNA NA
DBSCAN-SWA_81 1156525 : 1157491 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_82 1180816 : 1183785 2 Kaumoebavirus(50.0%) tRNA NA
DBSCAN-SWA_83 1192057 : 1192816 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_84 1196648 : 1219984 22 Tupanvirus(23.08%) NA NA
DBSCAN-SWA_85 1226164 : 1229460 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_86 1233576 : 1234965 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_87 1249018 : 1249759 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_88 1263819 : 1264758 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_89 1270455 : 1272974 3 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_90 1276397 : 1276820 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_91 1281306 : 1284503 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_92 1288107 : 1293910 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_93 1297735 : 1304946 9 Moraxella_phage(25.0%) NA NA
DBSCAN-SWA_94 1313720 : 1340515 23 uncultured_virus(16.67%) protease NA
DBSCAN-SWA_95 1344016 : 1346022 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_96 1349980 : 1357599 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_97 1362044 : 1378322 12 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_98 1384562 : 1393550 11 Streptococcus_phage(40.0%) tRNA NA
DBSCAN-SWA_99 1397419 : 1400831 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_100 1406329 : 1412113 5 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_101 1418812 : 1421220 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_102 1427818 : 1453952 15 Bacillus_phage(18.18%) transposase,protease,tRNA NA
DBSCAN-SWA_103 1465256 : 1470644 5 Tupanvirus(50.0%) protease NA
DBSCAN-SWA_104 1475112 : 1478611 3 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_105 1494106 : 1501532 7 Klosneuvirus(33.33%) NA NA
DBSCAN-SWA_106 1504903 : 1512773 6 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_107 1527174 : 1632131 118 Lactobacillus_phage(48.08%) integrase,protease,tRNA,capsid,portal,tail,holin,terminase,head attL 1543741:1543758|attR 1585409:1585426
DBSCAN-SWA_108 1635912 : 1636557 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_109 1640433 : 1641852 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_110 1648006 : 1649053 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_111 1652757 : 1653414 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_112 1662377 : 1669590 8 Enterococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_113 1675199 : 1677395 2 Enterococcus_phage(50.0%) NA NA
DBSCAN-SWA_114 1682203 : 1691347 8 Murmansk_poxvirus(20.0%) tRNA NA
DBSCAN-SWA_115 1699355 : 1700393 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_116 1703950 : 1705171 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_117 1709846 : 1710170 1 Rhodobacter_phage(100.0%) NA NA
DBSCAN-SWA_118 1713607 : 1714336 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_119 1723969 : 1728143 7 Phage_Wrath(50.0%) tRNA NA
DBSCAN-SWA_120 1760047 : 1761889 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_121 1773186 : 1773966 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_122 1780371 : 1787416 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_123 1793781 : 1794684 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_124 1799000 : 1804170 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_125 1807304 : 1815070 5 Bacillus_virus(66.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage