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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040122 Klebsiella pneumoniae strain LSH-KPN148 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,DinG,WYL 0 0 12 0
NZ_CP040124 Klebsiella pneumoniae strain LSH-KPN148 plasmid pLSH-KPN148-2, complete sequence 0 crisprs RT 0 0 1 0
NZ_CP040123 Klebsiella pneumoniae strain LSH-KPN148 plasmid pLSH-KPN148-1, complete sequence 0 crisprs csa3,RT 0 0 4 0
NZ_CP040125 Klebsiella pneumoniae strain LSH-KPN148 plasmid pLSH-KPN148-3, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP040122
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040122_1 4600581-4600675 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 450004 : 483262 33 uncultured_Caudovirales_phage(73.33%) integrase,tRNA,capsid,head,portal,tail,terminase,protease attL 467612:467629|attR 483607:483624
DBSCAN-SWA_2 1220375 : 1269693 60 Salmonella_phage(79.55%) integrase,lysis,coat,tRNA,capsid,head,plate,portal,transposase,tail,terminase attL 1205994:1206011|attR 1249227:1249244
DBSCAN-SWA_3 1366700 : 1427153 63 Salmonella_phage(40.0%) integrase,tRNA,transposase,holin,tail,terminase attL 1351948:1351963|attR 1411864:1411879
DBSCAN-SWA_4 1757335 : 1764241 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1806606 : 1815254 7 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_6 1953897 : 1992363 56 uncultured_Caudovirales_phage(34.04%) integrase,terminase attL 1951978:1951992|attR 1960918:1960932
DBSCAN-SWA_7 2221989 : 2232863 8 Escherichia_phage(85.71%) NA NA
DBSCAN-SWA_8 3089499 : 3155506 65 Enterobacteria_phage(31.43%) integrase,holin,transposase attL 3118092:3118109|attR 3158526:3158543
DBSCAN-SWA_9 3283180 : 3374073 93 Klebsiella_phage(43.18%) lysis,integrase,tRNA,capsid,head,portal,transposase,tail,terminase attL 3309983:3309997|attR 3371884:3371898
DBSCAN-SWA_10 3590415 : 3683366 93 Salmonella_phage(56.9%) lysis,integrase,tRNA,capsid,head,plate,portal,tail,terminase,protease attL 3645941:3645959|attR 3683441:3683459
DBSCAN-SWA_11 4336216 : 4348935 14 Enterobacteria_phage(63.64%) integrase,transposase attL 4336666:4336680|attR 4360788:4360802
DBSCAN-SWA_12 4817070 : 4826595 10 Enterobacteria_phage(83.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040124
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22093 : 48340 24 Escherichia_phage(75.0%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP040123
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 40167 : 78615 33 Macacine_betaherpesvirus(22.22%) transposase,integrase attL 49664:49681|attR 78675:78692
DBSCAN-SWA_2 82958 : 145087 72 Escherichia_phage(26.92%) transposase NA
DBSCAN-SWA_3 151440 : 209711 50 Escherichia_phage(41.18%) transposase,integrase attL 151378:151437|attR 178622:179441
DBSCAN-SWA_4 215072 : 221249 7 Stx2-converting_phage(50.0%) bacteriocin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage