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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040677 Kosakonia sacchari strain DSM 107661 chromosome, complete genome 1 crisprs cas3,csa3,DEDDh,DinG,WYL 0 1 8 0

Results visualization

1. NZ_CP040677
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040677_1 1189672-1189747 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040677_1 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder 1189697-1189722 26 NC_017311 Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence 23204-23229 4 0.846
NZ_CP040677_1 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder 1189697-1189722 26 NC_005863 Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence 28648-28673 4 0.846
NZ_CP040677_1 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder 1189697-1189722 26 NC_008741 Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence 175125-175150 5 0.808
NZ_CP040677_1 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder 1189697-1189722 26 NZ_CP048288 Paenibacillus sp. 14171R-81 plasmid unnamed2 45219-45244 6 0.769

1. spacer 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 4, identity: 0.846

agccgaatcagatgagcatgccgata	CRISPR spacer
tgccgaaacagatgaccatgccgaga	Protospacer
 ****** ******* ******** *

2. spacer 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 4, identity: 0.846

agccgaatcagatgagcatgccgata	CRISPR spacer
tgccgaaacagatgaccatgccgaga	Protospacer
 ****** ******* ******** *

3. spacer 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 5, identity: 0.808

agccgaatcagatgagcatgccgata	CRISPR spacer
tgccgaaacagatgaccatgccgagg	Protospacer
 ****** ******* ******** .

4. spacer 1.1|1189697|26|NZ_CP040677|CRISPRCasFinder matches to NZ_CP048288 (Paenibacillus sp. 14171R-81 plasmid unnamed2) position: , mismatch: 6, identity: 0.769

agccgaatcagatgagcatgccgata	CRISPR spacer
gatcgaatccgatgagcatgccgacg	Protospacer
...****** **************..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 586518 : 638734 53 Cronobacter_phage(50.0%) portal,integrase,capsid,holin,terminase attL 601933:601949|attR 628368:628384
DBSCAN-SWA_2 1150986 : 1216365 66 Erwinia_phage(30.56%) lysis,tail,integrase,tRNA,plate attL 1142987:1143001|attR 1211063:1211077
DBSCAN-SWA_3 1659082 : 1667451 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1742313 : 1750288 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_5 2870026 : 2920307 64 Salmonella_phage(31.25%) lysis,tail,integrase,transposase,tRNA,holin attL 2871254:2871268|attR 2925204:2925218
DBSCAN-SWA_6 3282111 : 3292006 15 Cronobacter_phage(75.0%) integrase,portal attL 3276837:3276854|attR 3292081:3292098
DBSCAN-SWA_7 3670316 : 3691575 29 Salmonella_phage(26.32%) integrase,holin,tail attL 3680879:3680893|attR 3691577:3691591
DBSCAN-SWA_8 4837729 : 4849574 20 Salmonella_phage(57.14%) integrase,holin attL 4838666:4838684|attR 4857163:4857181
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage