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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042596 Granulicella sp. WH15 chromosome, complete genome 6 crisprs RT,csa3,cas3,PD-DExK,cas2,cas1,cas9,DinG,WYL 3 2 2 0

Results visualization

1. NZ_CP042596
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_1 750641-750728 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_2 800044-800143 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_3 1358765-1359525 TypeII NA
11 spacers
cas2,cas1,cas9,PD-DExK

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_4 2600182-2600276 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_5 4084275-4084361 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042596_6 4333830-4333991 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042596_3 3.5|1359065|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359065-1359094 30 NZ_CP042596.1 3486492-3486521 0 1.0
NZ_CP042596_3 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359131-1359160 30 NZ_CP042596.1 3485648-3485677 0 1.0
NZ_CP042596_3 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359394-1359423 30 NZ_CP042596.1 3459042-3459071 1 0.967

1. spacer 3.5|1359065|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to position: 3486492-3486521, mismatch: 0, identity: 1.0

ggaattcaatgagcactcttcagcctggtg	CRISPR spacer
ggaattcaatgagcactcttcagcctggtg	Protospacer
******************************

2. spacer 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to position: 3485648-3485677, mismatch: 0, identity: 1.0

gagcggctgcaacagcagtggcaacagact	CRISPR spacer
gagcggctgcaacagcagtggcaacagact	Protospacer
******************************

3. spacer 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to position: 3459042-3459071, mismatch: 1, identity: 0.967

cgccgcccggatctcatccatcgagccgcg	CRISPR spacer
cgccgcccggatctcatccatcgaaccgcg	Protospacer
************************.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042596_3 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359131-1359160 30 MH319755 Marine virus AG-345-L05 Ga0172272_12 genomic sequence 32440-32469 7 0.767
NZ_CP042596_3 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359131-1359160 30 MK733259 Yersinia phage YeP1, complete genome 11251-11280 8 0.733
NZ_CP042596_3 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359131-1359160 30 MK733261 Yersinia phage YeP3, complete genome 11262-11291 8 0.733
NZ_CP042596_3 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359131-1359160 30 MK733260 Yersinia phage YeP2, complete genome 11262-11291 8 0.733
NZ_CP042596_3 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359394-1359423 30 NZ_CP041205 Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence 358231-358260 9 0.7
NZ_CP042596_3 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT 1359394-1359423 30 NZ_CP032923 Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence 142851-142880 9 0.7

1. spacer 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to MH319755 (Marine virus AG-345-L05 Ga0172272_12 genomic sequence) position: , mismatch: 7, identity: 0.767

gagcggctgcaacagcagtggcaacagact	CRISPR spacer
taggtgctgcagcagcagtggcaagagaag	Protospacer
 **  ******.************ ***  

2. spacer 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to MK733259 (Yersinia phage YeP1, complete genome) position: , mismatch: 8, identity: 0.733

gagcggctgcaacagcagtggcaacagact	CRISPR spacer
ttaccgctgtaacaccagtggcaacagaaa	Protospacer
  .* ****.**** *************  

3. spacer 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to MK733261 (Yersinia phage YeP3, complete genome) position: , mismatch: 8, identity: 0.733

gagcggctgcaacagcagtggcaacagact	CRISPR spacer
ttaccgctgtaacaccagtggcaacagaaa	Protospacer
  .* ****.**** *************  

4. spacer 3.6|1359131|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to MK733260 (Yersinia phage YeP2, complete genome) position: , mismatch: 8, identity: 0.733

gagcggctgcaacagcagtggcaacagact	CRISPR spacer
ttaccgctgtaacaccagtggcaacagaaa	Protospacer
  .* ****.**** *************  

5. spacer 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 9, identity: 0.7

cgccgcccggatctcatccatcgagccgcg	CRISPR spacer
gtttgcccggatctcatccattgcgcccat	Protospacer
  ..*****************.* ***   

6. spacer 3.10|1359394|30|NZ_CP042596|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 9, identity: 0.7

cgccgcccggatctcatccatcgagccgcg	CRISPR spacer
gtttgcccggatctcatccattgcgcccat	Protospacer
  ..*****************.* ***   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2025887 : 2068779 39 Pseudomonas_phage(14.29%) transposase,tRNA,integrase attL 2044563:2044577|attR 2072446:2072460
DBSCAN-SWA_2 3038744 : 3103249 47 Streptomyces_phage(33.33%) transposase,plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage