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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045471 Staphylococcus aureus strain SAW1 plasmid pSAW1-4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP045468 Staphylococcus aureus strain SAW1 chromosome, complete genome 13 crisprs cas3,DEDDh,DinG,csa3,WYL 4 5 9 1
NZ_CP045469 Staphylococcus aureus strain SAW1 plasmid pSAW1-2, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP045470 Staphylococcus aureus strain SAW1 plasmid pSAW1-3, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP045468
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_1 641430-641537 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_2 705124-705231 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_3 757761-757846 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_4 767249-767333 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_5 934937-935094 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_6 1053465-1053557 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_7 1225564-1225656 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_8 1433648-1433727 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_9 1974807-1974888 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_10 2034520-2034605 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_11 2284318-2284402 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_12 2438882-2438974 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045468_13 2777914-2777999 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 604398-604423 0 1.0
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 1137938-1137963 0 1.0
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 1288231-1288256 0 1.0
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 804170-804188 1 0.947
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 813398-813416 1 0.947
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1288298-1288316 1 0.947
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1288356-1288374 1 0.947
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1976260-1976278 1 0.947
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 2318621-2318639 1 0.947
NZ_CP045468_11 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder 2284348-2284372 25 NZ_CP045468.1 1137824-1137848 1 0.96
NZ_CP045468_11 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder 2284348-2284372 25 NZ_CP045468.1 1833943-1833967 1 0.96
NZ_CP045468_11 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder 2284348-2284372 25 NZ_CP045468.1 2284404-2284428 1 0.96
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 767222-767247 1 0.962
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 1805096-1805121 1 0.962
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 2318679-2318704 1 0.962
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 813274-813299 1 0.962
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 2024476-2024501 1 0.962
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 2201898-2201923 1 0.962
NZ_CP045468_3 3.1|757789|30|NZ_CP045468|CRISPRCasFinder 757789-757818 30 NZ_CP045468.1 798825-798854 2 0.933
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 162952-162970 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 604339-604357 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 804229-804247 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 914753-914771 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1133687-1133705 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1362935-1362953 2 0.895
NZ_CP045468_5 5.2|935044|19|NZ_CP045468|PILER-CR 935044-935062 19 NZ_CP045468.1 1659551-1659569 2 0.895
NZ_CP045468_11 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder 2284348-2284372 25 NZ_CP045468.1 1137768-1137792 2 0.92
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 2120405-2120430 2 0.923
NZ_CP045468_13 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder 2777944-2777969 26 NZ_CP045468.1 2120743-2120768 2 0.923

1. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 604398-604423, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 1137938-1137963, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

3. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 1288231-1288256, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

4. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 804170-804188, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

5. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 813398-813416, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacccc	Protospacer
****************.**

6. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1288298-1288316, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

7. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1288356-1288374, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

8. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1976260-1976278, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

9. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 2318621-2318639, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

10. spacer 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder matches to position: 1137824-1137848, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgccagcttctgtgttggggccccg	Protospacer
**.**********************

11. spacer 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder matches to position: 1833943-1833967, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

12. spacer 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder matches to position: 2284404-2284428, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

13. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 767222-767247, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

14. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 1805096-1805121, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactatgttggggccccg	Protospacer
********* ****************

15. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 2318679-2318704, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

16. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 813274-813299, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

17. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 2024476-2024501, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgacagcttctatgttggggccccg	Protospacer
*** **********************

18. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 2201898-2201923, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

19. spacer 3.1|757789|30|NZ_CP045468|CRISPRCasFinder matches to position: 798825-798854, mismatch: 2, identity: 0.933

cagagaaattggaacgccaatttctacagg	CRISPR spacer
caaagaaattggaacaccaatttctacagg	Protospacer
**.************.**************

20. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 162952-162970, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccccacc	Protospacer
************** * **

21. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 604339-604357, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacacc	Protospacer
**.************* **

22. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 804229-804247, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctttgttggggcccacacc	Protospacer
** ************* **

23. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 914753-914771, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccgcccc	Protospacer
**************.*.**

24. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1133687-1133705, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacccc	Protospacer
**.*************.**

25. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1362935-1362953, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggagcccacccc	Protospacer
*********.******.**

26. spacer 5.2|935044|19|NZ_CP045468|PILER-CR matches to position: 1659551-1659569, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggccccatcc	Protospacer
**************  ***

27. spacer 11.1|2284348|25|NZ_CP045468|CRISPRCasFinder matches to position: 1137768-1137792, mismatch: 2, identity: 0.92

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgccagcttctatgttggggccccg	Protospacer
**.********.*************

28. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 2120405-2120430, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtcttggggccccg	Protospacer
************.* ***********

29. spacer 13.1|2777944|26|NZ_CP045468|CRISPRCasFinder matches to position: 2120743-2120768, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045468_4 4.1|767278|27|NZ_CP045468|CRISPRCasFinder 767278-767304 27 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333734-333760 6 0.778
NZ_CP045468_4 4.1|767278|27|NZ_CP045468|CRISPRCasFinder 767278-767304 27 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3358-3384 6 0.778
NZ_CP045468_4 4.1|767278|27|NZ_CP045468|CRISPRCasFinder 767278-767304 27 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715510-715536 6 0.778
NZ_CP045468_1 1.1|641469|30|NZ_CP045468|CRISPRCasFinder 641469-641498 30 NZ_CP023312 Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence 270977-271006 7 0.767
NZ_CP045468_2 2.1|705163|30|NZ_CP045468|CRISPRCasFinder 705163-705192 30 NC_019739 Microcoleus sp. PCC 7113 plasmid pMIC7113.01, complete sequence 124306-124335 8 0.733
NZ_CP045468_3 3.1|757789|30|NZ_CP045468|CRISPRCasFinder 757789-757818 30 KC139649 Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds 9669-9698 9 0.7
NZ_CP045468_3 3.1|757789|30|NZ_CP045468|CRISPRCasFinder 757789-757818 30 KC139636 Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds 9669-9698 9 0.7
NZ_CP045468_3 3.1|757789|30|NZ_CP045468|CRISPRCasFinder 757789-757818 30 NC_025443 Salmonella phage 9NA, complete genome 7835-7864 9 0.7
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP024776 Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence 3826-3857 9 0.719
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP009062 Borreliella afzelii K78 plasmid lp28-1, complete sequence 16532-16563 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP018749 Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7 15178-15209 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP028869 Borreliella garinii strain 20047 plasmid lp28-7, complete sequence 11910-11941 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP028878 Borreliella bavariensis PBi plasmid lp28-7, complete sequence 4741-4772 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP028879 Borreliella bavariensis PBi plasmid lp28-9, complete sequence 11876-11907 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP017215 Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence 11994-12025 10 0.688
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_018987 Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence 12713-12744 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_017412 Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence 17252-17283 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_017419 Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence 17030-17061 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_017408 Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence 14812-14843 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_015920 Borreliella bissettii DN127 plasmid lp56, complete sequence 16601-16632 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_011779 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence 16934-16965 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NC_001852 Borreliella burgdorferi B31 plasmid lp28-2, complete sequence 16891-16922 15 0.531
NZ_CP045468_9 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder 1974832-1974863 32 NZ_CP017219 Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence 14876-14907 15 0.531

1. spacer 4.1|767278|27|NZ_CP045468|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 6, identity: 0.778

cggggccccaacacagaagctggcggg	CRISPR spacer
taaggcctcaacacagaagctggcgtc	Protospacer
...****.*****************  

2. spacer 4.1|767278|27|NZ_CP045468|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.778

cggggccccaacacagaagctggcggg	CRISPR spacer
gtaggcccagacacagaagctggcggt	Protospacer
  .***** .**************** 

3. spacer 4.1|767278|27|NZ_CP045468|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

cggggccccaacacagaagctggcggg	CRISPR spacer
tcagggccaaacacagaagctggcgga	Protospacer
. .** ** *****************.

4. spacer 1.1|641469|30|NZ_CP045468|CRISPRCasFinder matches to NZ_CP023312 (Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence) position: , mismatch: 7, identity: 0.767

gttaaagaatacagttggtttgcttgcgca	CRISPR spacer
aagtaagaatacagttgctttgctcgcgcc	Protospacer
.   ************* ******.**** 

5. spacer 2.1|705163|30|NZ_CP045468|CRISPRCasFinder matches to NC_019739 (Microcoleus sp. PCC 7113 plasmid pMIC7113.01, complete sequence) position: , mismatch: 8, identity: 0.733

acaaaggaacgcagttgattgctaatgcat	CRISPR spacer
tcaaaggcacgcagttgattggtagcgtta	Protospacer
 ****** ************* **..*.  

6. spacer 3.1|757789|30|NZ_CP045468|CRISPRCasFinder matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

7. spacer 3.1|757789|30|NZ_CP045468|CRISPRCasFinder matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

8. spacer 3.1|757789|30|NZ_CP045468|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

9. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP024776 (Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence) position: , mismatch: 9, identity: 0.719

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
caaattaggatttcttttttcgaaatccttga	Protospacer
     ***.*****************.**. *

10. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP009062 (Borreliella afzelii K78 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

11. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP018749 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

12. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP028869 (Borreliella garinii strain 20047 plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

13. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP028878 (Borreliella bavariensis PBi plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

14. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP028879 (Borreliella bavariensis PBi plasmid lp28-9, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

15. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggcaacagaatttgttttttagaaattcttgt	Protospacer
. * ..******* ****** ********.  

16. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

17. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_017412 (Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

18. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_017419 (Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

19. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

20. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_015920 (Borreliella bissettii DN127 plasmid lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

21. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_011779 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

22. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NC_001852 (Borreliella burgdorferi B31 plasmid lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

23. spacer 9.1|1974832|32|NZ_CP045468|CRISPRCasFinder matches to NZ_CP017219 (Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 736112 : 743932 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 755913 : 770422 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 863578 : 872357 11 Staphylococcus_phage(87.5%) terminase NA
DBSCAN-SWA_4 962433 : 1006487 39 Streptococcus_phage(40.0%) transposase,holin,bacteriocin,tRNA,protease NA
DBSCAN-SWA_5 1038693 : 1047166 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1318393 : 1325897 14 Staphylococcus_phage(87.5%) capsid,head NA
DBSCAN-SWA_7 1595837 : 1604149 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_8 1674793 : 1683836 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1809811 : 1906862 114 Staphylococcus_phage(97.03%) capsid,holin,integrase,tail,head,tRNA,terminase,protease,portal attL 1887664:1887679|attR 1911777:1911792
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP045468.1|WP_000384171.1|1835222_1835447_-|hypothetical-protein 1835222_1835447_- 74 aa aa NA NA NA 1809811-1906862 yes
2. NZ_CP045469
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 11092 17 Staphylococcus_phage(86.67%) integrase,terminase,coat attL 4707:4721|attR 12013:12027
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP045470
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 129 : 12721 15 Staphylococcus_phage(85.71%) integrase,terminase attL 2954:2968|attR 10255:10269
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage