CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP026084	Streptococcus agalactiae strain NJ1606 chromosome, complete genome	1 crisprs	csa3,cas3,DinG,cas9,cas1,cas2,csn2,csm6,RT,DEDDh	0	11	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP026084_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP026084_1

898798-899757

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CRT

14 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP026084_1

>merge|NZ_CP026084|1|898798-899757|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGAGTTGTAATAGAGCCACTTCCGATTGAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATCTTGGGGCATCGTCTGTTTTTAGTGCTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTTTGACCATGACTTATCAATTTCTTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGCACCTTCTTTTGTTTTGGTATCCATGCCGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAACAACGCTTATATTAAAACCGATAACAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACATTTAATCTAAAACAACTACGAGAGAAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCTTTCCATCCATACGAACCCCAGTTATAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTAAAAAATACCAACTATCAAAAGTGATAGTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCGTAGTAGTTATTCCAATTCTCTATATGTAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAACCACTTGATGCTGTATCTCTCATAAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTATTCTCAACAGTAGCTAAAGTTGCTTTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAAAGAGCCAGAAACTCAATCAGAAGAAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTGGTGTTGGCTGTTCTGGGATGACTACGTTGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACTTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGA

>NZ_CP026084|1|1|898798-899691|PILER-CR
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAGTTGTAATAGAGCCACTTCCGATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATCTTGGGGCATCGTCTGTTTTTAGTGCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTTGACCATGACTTATCAATTTCTTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCACCTTCTTTTGTTTTGGTATCCATGCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAACAACGCTTATATTAAAACCGATAACAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTAATCTAAAACAACTACGAGAGAAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTCCATCCATACGAACCCCAGTTATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAAAAATACCAACTATCAAAAGTGATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTAGTAGTTATTCCAATTCTCTATATGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAACCACTTGATGCTGTATCTCTCATAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTATTCTCAACAGTAGCTAAAGTTGCTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_CP026084|1|1|898798-899691|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAGTTGTAATAGAGCCACTTCCGATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATCTTGGGGCATCGTCTGTTTTTAGTGCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTTGACCATGACTTATCAATTTCTTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCACCTTCTTTTGTTTTGGTATCCATGCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAACAACGCTTATATTAAAACCGATAACAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTAATCTAAAACAACTACGAGAGAAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTCCATCCATACGAACCCCAGTTATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAAAAATACCAACTATCAAAAGTGATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTAGTAGTTATTCCAATTCTCTATATGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAACCACTTGATGCTGTATCTCTCATAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTATTCTCAACAGTAGCTAAAGTTGCTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC

>NZ_CP026084|1|1|898798-899757|CRT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGAGTTGTAATAGAGCCACTTCCGATTGAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATCTTGGGGCATCGTCTGTTTTTAGTGCTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTTGACCATGACTTATCAATTTCTTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGCACCTTCTTTTGTTTTGGTATCCATGCC
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAACAACGCTTATATTAAAACCGATAACAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	ATTTAATCTAAAACAACTACGAGAGAAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CTTTCCATCCATACGAACCCCAGTTATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TAAAAAATACCAACTATCAAAAGTGATAGT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	CGTAGTAGTTATTCCAATTCTCTATATGTA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAACCACTTGATGCTGTATCTCTCATAAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTATTCTCAACAGTAGCTAAAGTTGCTTTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	AAAAAGAGCCAGAAACTCAATCAGAAGAAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TGGTGTTGGCTGTTCTGGGATGACTACGTT
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	TTTAATATCGTCTATATAGATTCCTGGACG
GTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP026084.1\|WP_000323544.1\|891027_891798_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP026084.1\|WP_001241816.1\|888682_889063_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP026084.1\|WP_000168908.1\|907379_910172_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_CP026084.1\|WP_000590706.1\|898031_898697_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP026084.1\|WP_000914667.1\|889155_890286_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP026084.1\|WP_001019133.1\|900849_902682_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP026084.1\|WP_000146569.1\|911393_912032_-\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
NZ_CP026084.1\|WP_000665410.1\|906792_907227_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP026084.1\|WP_001056394.1\|912717_913329_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP026084.1\|WP_017648376.1\|892723_896836_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP026084.1\|WP_000122194.1\|897703_898045_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP026084.1\|WP_000523796.1\|890289_891027_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP026084.1\|WP_000159230.1\|888286_888658_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP026084.1\|WP_000653357.1\|891787_892444_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP026084.1\|WP_161508552.1\|905660_906320_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP026084.1\|WP_000678290.1\|902927_905561_+\|pneumococcal-type-histidine-triad-protein	unknown	unknown	gnl\|CDD\|380193
NZ_CP026084.1\|WP_161508503.1\|906328_906793_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP026084.1\|WP_000929493.1\|896837_897707_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP026084.1\|WP_000065324.1\|910171_911275_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_CP026084.1\|WP_000438313.1\|900297_900714_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085

Protein	Function_ID	Function_description	E-value
NZ_CP026084.1\|WP_000323544.1\|891027_891798_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_CP026084.1\|WP_001241816.1\|888682_889063_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_CP026084.1\|WP_000168908.1\|907379_910172_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP026084.1\|WP_000590706.1\|898031_898697_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_CP026084.1\|WP_000914667.1\|889155_890286_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP026084.1\|WP_001019133.1\|900849_902682_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP026084.1\|WP_000146569.1\|911393_912032_-\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	3.59126e-72
NZ_CP026084.1\|WP_000665410.1\|906792_907227_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_CP026084.1\|WP_001056394.1\|912717_913329_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	6.1265e-31
NZ_CP026084.1\|WP_017648376.1\|892723_896836_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP026084.1\|WP_000122194.1\|897703_898045_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_CP026084.1\|WP_000523796.1\|890289_891027_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	1.5045e-110
NZ_CP026084.1\|WP_000159230.1\|888286_888658_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	3.86733e-28
NZ_CP026084.1\|WP_000653357.1\|891787_892444_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_CP026084.1\|WP_161508552.1\|905660_906320_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	1.27235e-32
NZ_CP026084.1\|WP_000678290.1\|902927_905561_+\|pneumococcal-type-histidine-triad-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	8.21797e-22
NZ_CP026084.1\|WP_161508503.1\|906328_906793_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.70644e-18
NZ_CP026084.1\|WP_000929493.1\|896837_897707_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.68617e-138
NZ_CP026084.1\|WP_000065324.1\|910171_911275_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	2.245e-105
NZ_CP026084.1\|WP_000438313.1\|900297_900714_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	6.25805e-79

>NZ_CP026084.1|WP_000590706.1|898031_898697_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_CP026084.1|WP_000122194.1|897703_898045_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_CP026084.1|WP_000929493.1|896837_897707_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCNDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_CP026084.1|WP_017648376.1|892723_896836_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTASDRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEDDKRGSKYPIFATMQEEKDYHEKFPTIYHLRKELADKKEKADLRLFYLALAHIIKFRGHFLIEDDSFDVRNTDIQRQYQAFLEIFDTTFENNHLLSQNIDVEGILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKHFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSVAKKLYDSVLLSGILTVTDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFTDSSKDGYAGYIEGKTNQGAFYKYLSKLLTKQEGSEYFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENLDRIEKILTFRIPYYVGPLAREKSDFAWMTRKTDDSIRPWNFEELVDKEASAEAFIHRMTNNDLYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLKKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGKSNRNFMQLIHDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGKALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQVNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRDDKLMILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNELKGKPEEIEQKQEFVVQHVSYFDDILQIINDFSNRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_CP026084.1|WP_000653357.1|891787_892444_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_CP026084.1|WP_000323544.1|891027_891798_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_CP026084.1|WP_000523796.1|890289_891027_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDSIHAQARIEWQEKKED
>NZ_CP026084.1|WP_000914667.1|889155_890286_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELTRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDDLKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_CP026084.1|WP_001241816.1|888682_889063_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_CP026084.1|WP_000159230.1|888286_888658_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCNVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_CP026084.1|WP_000438313.1|900297_900714_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_CP026084.1|WP_001019133.1|900849_902682_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_CP026084.1|WP_000678290.1|902927_905561_+|pneumococcal-type-histidine-triad-protein
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPNANAKTNKNQAVRNFKAGAVAVNTLNDGYVFNPADIVSEDANGYVVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHHPTSDGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQENADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_CP026084.1|WP_161508552.1|905660_906320_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANIFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILQNISFKAGTGLTMKTLEGKIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRYDFLELYLAEFYAEWNGKR
>NZ_CP026084.1|WP_161508503.1|906328_906793_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLLAIAELLKQILVLHHGVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_CP026084.1|WP_000665410.1|906792_907227_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_CP026084.1|WP_000168908.1|907379_910172_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALKKMLPSYSRVLRKSSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNRLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINRQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILNLSDYVLSDDKVIPLNKEERNKIQLANDTFAKDGLRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDNAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIRALSIFGNKLINFGIIMEILAFLVLVYVPPFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR
>NZ_CP026084.1|WP_000065324.1|910171_911275_+|DUF2974-domain-containing-protein
MSNIITYLKNNSNLTFDELALNDVDILCLNEFGYISFEKLINTTEMKSVLVCELYHEYLQTMAKSYSFMFTSQRHDLCQLMMTSKRFKNLTLSYYRAEVSLEFEKQFAAMVFTIPNIDYHQVVFRGTDANLIGWKEDFKLTYMREISAHRSAIKYLNTILPYFDKVVLSGHSKGGNLALYAAMFTKPDLKAKIDLIWLIDSPGLQKTLLPTTEYKTTKQKCIRLLPEESIVGMMLYSDIEPLIISSNARGILQHDVTTWEIQEPAILKTGAGLSLKSICFEKTFQQWMAELKSQERKLFFDLLFDSFLSSGVSSLDDFNLASRAKMMKAFHSFRELDDDKKRLFNKSLKLLVTIFWGAYHDNSRKTK
>NZ_CP026084.1|WP_000146569.1|911393_912032_-|CatB-related-O-acetyltransferase
MASILKKHLEKRLELKNDPMRTDMSTGASYPKYGFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTITGMNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
>NZ_CP026084.1|WP_001056394.1|912717_913329_+|TVP38/TMEM64-family-protein
MNMKLSKRYRFWQKVIKALGVLALIATLVLVVYLYKLGILNDSNELKDLVHKYEFWGPMIFIVAQIVQIVFPVIPGGVTTVAGFLIFGPTLGFIYNYIGIIIGSVILFWLVKFYGRKFVLLFMDQKTFDKYESKLETSGYEKFFIFCMASPISPADIMVMITGLSNMSIKRFVTIIMITKPISIIGYSYLWIYGGDILKNFLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	MK448736	Streptococcus phage Javan35, complete genome	4874-4903	0	1.0
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	MK448781	Streptococcus phage Javan5, complete genome	4874-4903	0	1.0
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	MK448938	Streptococcus phage Javan44, complete genome	4874-4903	0	1.0
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	MK448911	Streptococcus phage Javan34, complete genome	4874-4903	0	1.0
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	MK448916	Streptococcus phage Javan36, complete genome	4874-4903	0	1.0
NZ_CP026084_1	1.2\|898900\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898900-898929	30	MK448796	Streptococcus phage Javan53, complete genome	32666-32695	2	0.933
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MK448749	Streptococcus phage Javan39, complete genome	26048-26077	2	0.933
NZ_CP026084_1	1.5\|899098\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899098-899127	30	NC_004585	Streptococcus prophage 315.2, complete genome	19258-19287	2	0.933
NZ_CP026084_1	1.5\|899098\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899098-899127	30	MK448966	Streptococcus phage Javan508, complete genome	19113-19142	2	0.933
NZ_CP026084_1	1.5\|899098\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899098-899127	30	MK448772	Streptococcus phage Javan483, complete genome	19127-19156	2	0.933
NZ_CP026084_1	1.7\|899230\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899230-899259	30	MK448796	Streptococcus phage Javan53, complete genome	38071-38100	2	0.933
NZ_CP026084_1	1.7\|899230\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899230-899259	30	MK448956	Streptococcus phage Javan48, complete genome	32575-32604	2	0.933
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	MK448924	Streptococcus phage Javan384, complete genome	8131-8160	3	0.9
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	JX409894	Streptococcus phage LYGO9, complete genome	22341-22370	3	0.9
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	JX409895	Streptococcus phage JX01, complete genome	34188-34217	3	0.9
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	MK448721	Streptococcus phage Javan263, complete genome	11225-11254	5	0.833
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	MK448986	Streptococcus phage Javan570, complete genome	6794-6823	5	0.833
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	49644-49673	6	0.8
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	KX987999	Bacillus phage BCP12, complete genome	1741-1770	6	0.8
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	JN797797	Bacillus phage BCP78, complete genome	32667-32696	6	0.8
NZ_CP026084_1	1.6\|899164\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899164-899193	30	NC_047735	Bacillus phage BCU4, complete genome	25000-25029	6	0.8
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	27570-27599	6	0.8
NZ_CP026084_1	1.10\|899428\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899428-899457	30	NZ_CP019583	Lactobacillus helveticus strain LH5 plasmid pCBTLH5_2, complete sequence	2104-2133	6	0.8
NZ_CP026084_1	1.10\|899428\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899428-899457	30	NZ_AP018406	Lactobacillus plantarum strain SN35N plasmid pSN35N-1, complete sequence	11383-11412	6	0.8
NZ_CP026084_1	1.10\|899428\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899428-899457	30	NC_014386	Lactobacillus helveticus R0052 plasmid pIR52-1, complete sequence	4282-4311	6	0.8
NZ_CP026084_1	1.12\|899560\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899560-899589	30	MK580972	Stenotrophomonas phage YB07, complete genome	157678-157707	6	0.8
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	MT774395	CrAssphage cr52_1, complete genome	80676-80705	7	0.767
NZ_CP026084_1	1.3\|898966\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	898966-898995	30	MN379647	Chicken microvirus mg8_45, complete genome	5219-5248	7	0.767
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	28078-28107	7	0.767
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	26344-26373	7	0.767
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	48040-48069	7	0.767
NZ_CP026084_1	1.11\|899494\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899494-899523	30	NZ_CP050315	Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence	125604-125633	7	0.767
NZ_CP026084_1	1.12\|899560\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899560-899589	30	MN095772	Stenotrophomonas phage Moby, complete genome	147461-147490	7	0.767
NZ_CP026084_1	1.13\|899626\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899626-899655	30	MT375042	Acinetobacter phage vB_AbaP_Alexa, complete genome	22918-22947	7	0.767
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MN694227	Marine virus AFVG_250M515, complete genome	9749-9778	8	0.733
NZ_CP026084_1	1.5\|899098\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899098-899127	30	MH729874	Klebsiella phage KP179, complete genome	98384-98413	8	0.733
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	KY653128	Staphylococcus phage IME1364_01, complete genome	2960-2989	8	0.733
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	MF417959	Uncultured Caudovirales phage clone 2F_5, partial genome	6398-6427	8	0.733
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	36961-36990	8	0.733
NZ_CP026084_1	1.8\|899296\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899296-899325	30	HQ632860	Vibrio phage jenny 12G5 genomic sequence	37630-37659	8	0.733
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	NZ_CP024789	Nostoc flagelliforme CCNUN1 plasmid pNFSY04, complete sequence	136728-136757	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH892366	Streptococcus phage SW18, complete genome	8963-8992	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937460	Streptococcus phage CHPC640, complete genome	8300-8329	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	KY705258	Streptococcus phage P4761, complete genome	8441-8470	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937498	Streptococcus phage CHPC1057, complete genome	8994-9023	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	KY705285	Streptococcus phage P9852, complete genome	8387-8416	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	NC_007019	Streptococcus phage 2972, complete genome	9316-9345	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	AY699705	Streptococcus thermophilus bacteriophage 2972, complete genome	9316-9345	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	CP029253	Streptococcus phage VS-2018a, complete genome	21736-21765	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937476	Streptococcus phage CHPC933, partial genome	8119-8148	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH892363	Streptococcus phage SW14, complete genome	8773-8802	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937475	Streptococcus phage CHPC931, complete genome	9199-9228	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	KY705268	Streptococcus phage P7571, complete genome	8390-8419	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH892364	Streptococcus phage SW15, complete genome	8895-8924	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937463	Streptococcus phage CHPC676, complete genome	8406-8435	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	KY705269	Streptococcus phage P7572, complete genome	8390-8419	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	NC_010353	Streptococcus phage 858, complete genome	9324-9353	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	MH937484	Streptococcus phage CHPC1008, complete genome	8974-9003	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	KY705286	Streptococcus phage P9853, complete genome	8415-8444	9	0.7
NZ_CP026084_1	1.4\|899032\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899032-899061	30	NC_022776	Streptococcus phage TP-778L complete genome	21830-21859	9	0.7
NZ_CP026084_1	1.12\|899560\|30\|NZ_CP026084\|PILER-CR,CRISPRCasFinder,CRT	899560-899589	30	MN693441	Marine virus AFVG_25M481, complete genome	6991-7020	9	0.7

1. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448736 (Streptococcus phage Javan35, complete genome) position: , mismatch: 0, identity: 1.0

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
atttaatctaaaacaactacgagagaaaaa	Protospacer
******************************

2. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448781 (Streptococcus phage Javan5, complete genome) position: , mismatch: 0, identity: 1.0

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
atttaatctaaaacaactacgagagaaaaa	Protospacer
******************************

3. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448938 (Streptococcus phage Javan44, complete genome) position: , mismatch: 0, identity: 1.0

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
atttaatctaaaacaactacgagagaaaaa	Protospacer
******************************

4. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448911 (Streptococcus phage Javan34, complete genome) position: , mismatch: 0, identity: 1.0

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
atttaatctaaaacaactacgagagaaaaa	Protospacer
******************************

5. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448916 (Streptococcus phage Javan36, complete genome) position: , mismatch: 0, identity: 1.0

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
atttaatctaaaacaactacgagagaaaaa	Protospacer
******************************

6. spacer 1.2|898900|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 2, identity: 0.933

atcttggggcatcgtctgtttttagtgcta	CRISPR spacer
atcttggagcatcatctgtttttagtgcta	Protospacer
*******.*****.****************

7. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 2, identity: 0.933

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccctcttttgtttttgtatccatgcc	Protospacer
******.*********** ***********

8. spacer 1.5|899098|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_004585 (Streptococcus prophage 315.2, complete genome) position: , mismatch: 2, identity: 0.933

taacaacgcttatattaaaaccgataacaa	CRISPR spacer
taacaatgcttatattaaaacggataacaa	Protospacer
******.************** ********

9. spacer 1.5|899098|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448966 (Streptococcus phage Javan508, complete genome) position: , mismatch: 2, identity: 0.933

taacaacgcttatattaaaaccgataacaa	CRISPR spacer
taacaatgcttatattaaaacggataacaa	Protospacer
******.************** ********

10. spacer 1.5|899098|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448772 (Streptococcus phage Javan483, complete genome) position: , mismatch: 2, identity: 0.933

taacaacgcttatattaaaaccgataacaa	CRISPR spacer
taacaatgcttatattaaaacggataacaa	Protospacer
******.************** ********

11. spacer 1.7|899230|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 2, identity: 0.933

ctttccatccatacgaaccccagttatagt	CRISPR spacer
ctttccatccatacgaaccccaattataat	Protospacer
**********************.*****.*

12. spacer 1.7|899230|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 2, identity: 0.933

ctttccatccatacgaaccccagttatagt	CRISPR spacer
ctttccatccatacgaaccccaattgtagt	Protospacer
**********************.**.****

13. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448924 (Streptococcus phage Javan384, complete genome) position: , mismatch: 3, identity: 0.9

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
attttgaccaagacttatcgatttcttttt	Protospacer
 ********* ********.**********

14. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 3, identity: 0.9

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
cgcaccttctttcgttttggtttccatgcc	Protospacer
.***********.******** ********

15. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 3, identity: 0.9

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
cgcaccttctttcgttttggtttccatgcc	Protospacer
.***********.******** ********

16. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448721 (Streptococcus phage Javan263, complete genome) position: , mismatch: 5, identity: 0.833

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
actgagaccacgacttatcaatttcttttt	Protospacer
 .*  *****.*******************

17. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK448986 (Streptococcus phage Javan570, complete genome) position: , mismatch: 5, identity: 0.833

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
cttttgaccatgatttatcaatctgcttct	Protospacer
*************.********.* .**.*

18. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 6, identity: 0.8

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
ctttagaacatgacttatcaattaccactt	Protospacer
**** ** *************** *. .**

19. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KX987999 (Bacillus phage BCP12, complete genome) position: , mismatch: 6, identity: 0.8

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
aattaatcaaaaacaactacaagagtatat	Protospacer
* ****** ***********.**** * *

20. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to JN797797 (Bacillus phage BCP78, complete genome) position: , mismatch: 6, identity: 0.8

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
aattaatcaaaaacaactacaagagtatat	Protospacer
* ****** ***********.**** * *

21. spacer 1.6|899164|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_047735 (Bacillus phage BCU4, complete genome) position: , mismatch: 6, identity: 0.8

atttaatctaaaacaactacgagagaaaaa	CRISPR spacer
aattaatcaaaaacaactacaagagtatat	Protospacer
* ****** ***********.**** * *

22. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 6, identity: 0.8

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
taaaaaagaccaactatgaaaagtcaaggg	Protospacer
******* ********* ****** * .*

23. spacer 1.10|899428|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019583 (Lactobacillus helveticus strain LH5 plasmid pCBTLH5_2, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

24. spacer 1.10|899428|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018406 (Lactobacillus plantarum strain SN35N plasmid pSN35N-1, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

25. spacer 1.10|899428|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_014386 (Lactobacillus helveticus R0052 plasmid pIR52-1, complete sequence) position: , mismatch: 6, identity: 0.8

--aaaccacttgatgctgtatctctcataaaa	CRISPR spacer
tcaaataa--agatgctttatctctcataaaa	Protospacer
  ***. *   ****** **************

26. spacer 1.12|899560|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MK580972 (Stenotrophomonas phage YB07, complete genome) position: , mismatch: 6, identity: 0.8

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
cagaggagccagaatctcaatcagaaggta	Protospacer
 *.*.********* ************. *

27. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MT774395 (CrAssphage cr52_1, complete genome) position: , mismatch: 7, identity: 0.767

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
tttaatctcatgacttattaatttcttttt	Protospacer
.**    .**********.***********

28. spacer 1.3|898966|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MN379647 (Chicken microvirus mg8_45, complete genome) position: , mismatch: 7, identity: 0.767

cttttgaccatgacttatcaatttcttttt	CRISPR spacer
attttgaccatgacttctcaataaaatgtt	Protospacer
 *************** *****    * **

29. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 7, identity: 0.767

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
taaaaaatactaactatcaaactggagatg	Protospacer
**********.**********   ** *

30. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 7, identity: 0.767

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
taaaaaatactaactatcaaactggagatg	Protospacer
**********.**********   ** *

31. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.767

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
taaaaaatactaactatcaaactggagatg	Protospacer
**********.**********   ** *

32. spacer 1.11|899494|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050315 (Shewanella aestuarii strain PN3F2 plasmid pPN3F2_2, complete sequence) position: , mismatch: 7, identity: 0.767

-ttattctcaacagtagctaaagttgctttt	CRISPR spacer
attgcacat-acagtagctaaagttgttttt	Protospacer
 **.. * . ****************.****

33. spacer 1.12|899560|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MN095772 (Stenotrophomonas phage Moby, complete genome) position: , mismatch: 7, identity: 0.767

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
cagcggagccagaatctcaatcagaaggta	Protospacer
 *. .********* ************. *

34. spacer 1.13|899626|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MT375042 (Acinetobacter phage vB_AbaP_Alexa, complete genome) position: , mismatch: 7, identity: 0.767

tggtgttggctgttctgggatgactacgtt	CRISPR spacer
tggtgttggctgttctggaatggtcggctt	Protospacer
******************.***....  **

35. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MN694227 (Marine virus AFVG_250M515, complete genome) position: , mismatch: 8, identity: 0.733

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccaccttttgttttggtattttttat	Protospacer
****** .***************.. *  .

36. spacer 1.5|899098|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH729874 (Klebsiella phage KP179, complete genome) position: , mismatch: 8, identity: 0.733

taacaacgcttatattaaaaccgataacaa	CRISPR spacer
cgaatttgcttatattaaaagctataacaa	Protospacer
..*   .************* * *******

37. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY653128 (Staphylococcus phage IME1364_01, complete genome) position: , mismatch: 8, identity: 0.733

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
acaaaaatatcaattatcaaaagtggttaa	Protospacer
  *******.***.***********.* .

38. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MF417959 (Uncultured Caudovirales phage clone 2F_5, partial genome) position: , mismatch: 8, identity: 0.733

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
acaaaaatatcaattatcaaaagtggttca	Protospacer
  *******.***.***********.*

39. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 8, identity: 0.733

taaaaaataccaactatcaaaagtgatagt	CRISPR spacer
aaaaaattaccaactatcaaaattataaac	Protospacer
 ***** *************** *.  *..

40. spacer 1.8|899296|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to HQ632860 (Vibrio phage jenny 12G5 genomic sequence) position: , mismatch: 8, identity: 0.733

taaaaaataccaactatcaaa--agtgatagt	CRISPR spacer
taaaacataccaactatcaaatcaacacca--	Protospacer
***** ***************  *... .*

41. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024789 (Nostoc flagelliforme CCNUN1 plasmid pNFSY04, complete sequence) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
aatcagttcttttttttttgtatccatgct	Protospacer
 ..   ******* **** **********.

42. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH892366 (Streptococcus phage SW18, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

43. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937460 (Streptococcus phage CHPC640, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

44. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY705258 (Streptococcus phage P4761, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

45. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937498 (Streptococcus phage CHPC1057, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

46. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY705285 (Streptococcus phage P9852, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

47. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_007019 (Streptococcus phage 2972, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

48. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to AY699705 (Streptococcus thermophilus bacteriophage 2972, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

49. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to CP029253 (Streptococcus phage VS-2018a, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

50. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937476 (Streptococcus phage CHPC933, partial genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

51. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH892363 (Streptococcus phage SW14, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

52. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937475 (Streptococcus phage CHPC931, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

53. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY705268 (Streptococcus phage P7571, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

54. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH892364 (Streptococcus phage SW15, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

55. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937463 (Streptococcus phage CHPC676, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

56. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY705269 (Streptococcus phage P7572, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

57. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_010353 (Streptococcus phage 858, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

58. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MH937484 (Streptococcus phage CHPC1008, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

59. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to KY705286 (Streptococcus phage P9853, complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

60. spacer 1.4|899032|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to NC_022776 (Streptococcus phage TP-778L complete genome) position: , mismatch: 9, identity: 0.7

tgcaccttcttttgttttggtatccatgcc	CRISPR spacer
tgcaccatcttttgttttggtgctatctgc	Protospacer
****** **************...  .  *

61. spacer 1.12|899560|30|NZ_CP026084|PILER-CR,CRISPRCasFinder,CRT matches to MN693441 (Marine virus AFVG_25M481, complete genome) position: , mismatch: 9, identity: 0.7

aaaaagagccagaaactcaatcagaagaaa	CRISPR spacer
ccatcctatcacaaactcaatcagaagaaa	Protospacer
  *    ..** ******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40527 : 48633

Mollivirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000638885.1\|40527_41982_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.2e-54	32.7
WP_001291326.1\|42009_43032_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	6.9e-63	44.3
WP_000685110.1\|43199_43748_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
WP_000780018.1\|43770_44523_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166556.1\|44542_46090_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-78	48.9
WP_001045907.1\|46282_47182_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783420.1\|47328_48633_+	LysM peptidoglycan-binding domain-containing protein	F1B2Q4	Tsukamurella_phage	3.0e-10	35.8

DBSCAN-SWA_2

247714 : 257256

Streptococcus_phage(62.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017648199.1\|247714_248068_+	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	1.3e-05	42.2
WP_017648198.1\|248079_248259_+	helix-turn-helix transcriptional regulator	A0A139ZPJ2	Marinitoga_camini_virus	1.9e-05	44.4
WP_017648195.1\|249654_250512_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_017648194.1\|250522_251209_+	helix-turn-helix transcriptional regulator	Q6DMX1	Streptococcus_phage	6.6e-70	57.0
WP_017648193.1\|251213_252629_+	Y-family DNA polymerase	M1Q231	Streptococcus_phage	4.7e-195	72.3
WP_017648192.1\|252628_253015_+	hypothetical protein	A0A1B0RXA8	Streptococcus_phage	1.4e-24	48.7
WP_017648191.1\|252986_253292_+	hypothetical protein	A0A1B0RX98	Streptococcus_phage	5.2e-19	53.9
WP_017648190.1\|253386_255900_+	AAA family ATPase	A0A1B1IUG5	uncultured_Mediterranean_phage	8.2e-09	27.3
WP_079265803.1\|256089_256263_-	FanG protein	NA	NA	NA	NA
WP_017648189.1\|256291_256906_+	CadD family cadmium resistance transporter	NA	NA	NA	NA
WP_017648188.1\|256917_257256_+	Cd(II)/Zn(II)-sensing metalloregulatory transcriptional regulator CadX	E4ZFI8	Streptococcus_phage	5.8e-11	34.3

DBSCAN-SWA_3

586922 : 594476

Streptococcus_phage(50.0%)

transposase,integrase

attL 580268:580283|attR 597755:597770

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
580268:580283	attL	NA	NA	NA	NA
WP_000595708.1\|586922_588119_+	voltage-gated chloride channel family protein	A0A1X9I5Z9	Streptococcus_phage	4.6e-103	54.5
WP_001068667.1\|588698_589046_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_071659971.1\|589190_589805_-\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001872365.1\|589807_590074_-	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_000640620.1\|590073_590478_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001122304.1\|590639_590840_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_001865698.1\|590861_591122_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.4e-11	43.0
WP_001867107.1\|591247_591457_+\|transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	1.4e-15	55.4
WP_000508795.1\|591629_591791_-	TM2 domain-containing protein	NA	NA	NA	NA
WP_000594360.1\|592532_593810_+	ABC transporter permease	NA	NA	NA	NA
WP_000353149.1\|593819_594476_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
597755:597770	attR	NA	NA	NA	NA

DBSCAN-SWA_4

606558 : 616524

Streptococcus_phage(90.0%)

integrase

attL 601810:601825|attR 618714:618729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
601810:601825	attL	NA	NA	NA	NA
WP_000137373.1\|606558_607014_-	YueI family protein	W6LLD2	Streptococcus_phage	7.8e-27	48.9
WP_000022832.1\|607211_608519_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
WP_001021808.1\|608678_609842_-\|integrase	site-specific integrase	A0A1X9I6A9	Streptococcus_phage	4.7e-209	93.0
WP_000528105.1\|609914_610430_-	helix-turn-helix transcriptional regulator	Q9AZN3	Lactococcus_phage	2.6e-10	47.9
WP_000587633.1\|610581_610770_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001218610.1\|610946_611222_+	hypothetical protein	A0A1X9I5W5	Streptococcus_phage	2.7e-38	90.1
WP_000998226.1\|611211_611415_+	hypothetical protein	A0A1X9I5V6	Streptococcus_phage	8.9e-23	85.1
WP_000190301.1\|611622_611889_+	hypothetical protein	A0A1X9I6M4	Streptococcus_phage	6.1e-40	96.6
WP_001883560.1\|612248_613037_+	DnaD domain protein	A0A1X9I617	Streptococcus_phage	4.2e-129	87.5
WP_000957430.1\|613052_613898_+	ATP-binding protein	A0A1X9I6C4	Streptococcus_phage	4.5e-145	92.1
WP_000273649.1\|614155_614338_+	hypothetical protein	NA	NA	NA	NA
WP_000213653.1\|614435_615014_+	hypothetical protein	NA	NA	NA	NA
WP_000639503.1\|615010_615298_+	hypothetical protein	NA	NA	NA	NA
WP_000918211.1\|615336_615765_+	hypothetical protein	NA	NA	NA	NA
WP_000624041.1\|615757_616084_+	hypothetical protein	NA	NA	NA	NA
WP_000162609.1\|616101_616524_+	hypothetical protein	K4JTJ9	Streptococcus_phage	1.1e-30	51.6
618714:618729	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1093431 : 1138185

Streptococcus_phage(97.22%)

transposase,tail,portal,capsid,protease,terminase,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047209398.1\|1093431_1094997_-	recombinase family protein	Q6DMS5	Streptococcus_phage	2.4e-176	60.5
WP_047209397.1\|1094999_1096208_-	recombinase family protein	Q6DMS6	Streptococcus_phage	1.8e-102	50.5
WP_047209395.1\|1096422_1096824_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_047209394.1\|1096933_1098403_-	LysM peptidoglycan-binding domain-containing protein	A0A1X9I678	Streptococcus_phage	1.1e-226	79.1
WP_047209393.1\|1098404_1098809_-\|holin	phage holin family protein	D0R0E9	Streptococcus_phage	1.1e-45	74.0
WP_047209392.1\|1098826_1100683_-	prophage minor structural protein	Q6DMS9	Streptococcus_phage	2.5e-257	73.1
WP_047209402.1\|1100695_1103611_-	carbamoylsarcosine amidase	Q6DMT0	Streptococcus_phage	0.0e+00	64.6
WP_047209391.1\|1103610_1104336_-\|tail	phage tail protein	Q6DMT1	Streptococcus_phage	3.6e-82	57.9
WP_161508510.1\|1104332_1107386_-\|tail	phage tail tape measure protein	Q6DMT2	Streptococcus_phage	8.1e-253	76.0
WP_001249612.1\|1107568_1107988_-	hypothetical protein	A0A1X9I691	Streptococcus_phage	1.3e-57	78.4
WP_000818568.1\|1107999_1108569_-\|tail	phage tail protein	A0A1B0RXE2	Streptococcus_phage	3.3e-99	95.7
WP_001209976.1\|1108571_1108898_-	hypothetical protein	M1Q1Z4	Streptococcus_phage	4.1e-38	68.5
WP_047209389.1\|1108906_1109275_-	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	4.5e-33	61.2
WP_000684960.1\|1109267_1109606_-\|head,tail	head-tail adaptor protein	A0A1B0RXJ6	Streptococcus_phage	4.3e-38	70.5
WP_000988606.1\|1109605_1109863_-\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	7.3e-30	78.8
WP_000040503.1\|1109859_1111068_-\|capsid	phage major capsid protein	M1Q1R5	Streptococcus_phage	1.4e-211	91.5
WP_047209388.1\|1111081_1111780_-\|protease	Clp protease ClpP	M1PLE5	Streptococcus_phage	4.5e-106	84.1
WP_047209387.1\|1111772_1113062_-\|portal	phage portal protein	A0A1B0RXD8	Streptococcus_phage	1.0e-228	90.2
WP_000666492.1\|1113431_1113737_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001140393.1\|1113736_1114039_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_017647181.1\|1114094_1115687_-\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	3.5e-308	95.7
WP_000290863.1\|1115683_1116157_-\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	7.7e-86	98.1
WP_000998548.1\|1116207_1116657_-	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	7.2e-17	66.7
WP_000164558.1\|1116667_1116922_-	hypothetical protein	NA	NA	NA	NA
WP_047209386.1\|1116998_1118252_-	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	2.5e-232	94.2
WP_047209385.1\|1118248_1119505_-	DNA modification methylase	A0A1B0RXE5	Streptococcus_phage	2.3e-225	90.4
WP_001004990.1\|1119476_1119932_-	hypothetical protein	A0A1X9I6V0	Streptococcus_phage	2.4e-52	62.7
WP_001138029.1\|1120219_1120585_-	HNH endonuclease	Q6DMV2	Streptococcus_phage	5.1e-61	86.0
WP_000604173.1\|1120586_1121624_-	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	8.0e-168	83.8
WP_000166941.1\|1121671_1121854_-	hypothetical protein	A0A1B0RXC3	Streptococcus_phage	1.5e-21	88.3
WP_000356296.1\|1122048_1122525_-	hypothetical protein	A0A1B0RXB9	Streptococcus_phage	4.1e-71	84.2
WP_047209384.1\|1122517_1123894_-	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	1.6e-232	86.7
WP_047209383.1\|1123874_1124156_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	1.8e-37	78.5
WP_161508511.1\|1124435_1126724_-	DNA primase	A0A1B0RXC5	Streptococcus_phage	0.0e+00	87.1
WP_047209381.1\|1127082_1127406_+	hypothetical protein	D0R0B4	Streptococcus_phage	3.4e-32	72.0
WP_047209380.1\|1127398_1128520_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	2.2e-200	89.5
WP_047212072.1\|1128524_1129088_+	DUF2815 family protein	E4ZFK3	Streptococcus_phage	2.1e-90	91.2
WP_047209453.1\|1129160_1131110_+	DNA polymerase	D0R0B0	Streptococcus_phage	0.0e+00	84.0
WP_000182251.1\|1131872_1132469_-	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	2.5e-12	30.5
WP_047212073.1\|1132902_1134021_+	hypothetical protein	NA	NA	NA	NA
WP_001176803.1\|1134020_1134245_+	hypothetical protein	NA	NA	NA	NA
WP_047209503.1\|1134235_1135894_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_000673009.1\|1135883_1136093_+	helix-turn-helix domain-containing protein	A0A2K5B263	Erysipelothrix_phage	4.8e-16	58.5
WP_047209502.1\|1136180_1136363_+	hypothetical protein	NA	NA	NA	NA
WP_000154547.1\|1136352_1136703_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000391861.1\|1136756_1136942_+\|transposase	transposase	NA	NA	NA	NA
WP_079432497.1\|1136913_1138185_+\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1189203 : 1234540

Streptococcus_phage(90.2%)

terminase,holin,integrase

attL 1185880:1185897|attR 1242557:1242574

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1185880:1185897	attL	NA	NA	NA	NA
WP_017648360.1\|1189203_1189383_-	hypothetical protein	J7KBZ4	Streptococcus_phage	6.4e-25	100.0
WP_000076696.1\|1189494_1189695_-	CsbD family protein	J7KJ36	Streptococcus_phage	7.4e-22	87.9
WP_000837685.1\|1189822_1190338_-	hypothetical protein	NA	NA	NA	NA
WP_017648359.1\|1190701_1192036_-	lysin	J7KH48	Streptococcus_phage	7.7e-248	91.9
WP_000609112.1\|1192161_1192389_-\|holin	phage holin	A7J2B3	Streptococcus_phage	2.2e-30	97.3
WP_001017826.1\|1192381_1192684_-	hypothetical protein	J7KH30	Streptococcus_phage	5.2e-27	63.4
WP_000889195.1\|1192843_1193236_-	DUF1366 domain-containing protein	J7KKA3	Streptococcus_phage	1.8e-11	39.6
WP_017648357.1\|1193247_1195251_-	hypothetical protein	J7KC14	Streptococcus_phage	0.0e+00	85.3
WP_017648355.1\|1197265_1197736_-\|terminase	phage terminase small subunit P27 family	J7KC46	Streptococcus_phage	1.6e-70	85.2
WP_017648354.1\|1197910_1198246_-	HNH endonuclease	J7KH36	Streptococcus_phage	3.1e-57	95.5
WP_001132272.1\|1198346_1198532_+	addiction module toxin, HicA family	F0PIL1	Enterococcus_phage	3.5e-10	61.3
WP_017647857.1\|1198583_1198961_+	pilus biosynthesis protein HicB	I3NLB2	Bifidobacterium_phage	2.0e-15	40.5
WP_017648353.1\|1200168_1200606_-	DUF1492 domain-containing protein	A0A097PBF1	Streptococcus_pyogenes_phage	1.1e-75	98.6
WP_000420682.1\|1201557_1201872_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|1201887_1202274_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000813488.1\|1202302_1203688_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000879507.1\|1203690_1203843_+	hypothetical protein	NA	NA	NA	NA
WP_161508513.1\|1203865_1205071_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	6.3e-233	99.8
WP_001009056.1\|1205113_1205335_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|1205451_1205949_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|1205923_1206430_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|1206413_1208861_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000804748.1\|1208863_1211041_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000769868.1\|1211037_1212039_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_001224319.1\|1212035_1212968_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
WP_001791010.1\|1213212_1213329_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_161508514.1\|1213344_1215270_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.7
WP_000336323.1\|1215388_1215556_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001227347.1\|1215615_1215969_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000804885.1\|1216473_1216896_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_000857133.1\|1216892_1217123_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000814511.1\|1217583_1217787_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|1217868_1219086_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_017648351.1\|1219303_1219603_-	hypothetical protein	M1PFH6	Streptococcus_phage	2.2e-17	44.3
WP_017648350.1\|1219623_1220136_-	DUF1642 domain-containing protein	A0A097PAV5	Streptococcus_pyogenes_phage	9.4e-29	44.5
WP_017285439.1\|1220139_1220631_-	hypothetical protein	U4KJB3	Streptococcus_phage	4.3e-31	44.5
WP_017648349.1\|1220635_1221121_-	class I SAM-dependent methyltransferase	A0A097PAU8	Streptococcus_pyogenes_phage	5.1e-85	88.8
WP_017647862.1\|1221123_1221393_-	hypothetical protein	A7J287	Streptococcus_phage	3.7e-24	70.8
WP_017647864.1\|1221550_1221934_-	hypothetical protein	J7KIZ4	Streptococcus_phage	2.9e-38	66.7
WP_017647866.1\|1222072_1222369_-	DUF1599 domain-containing protein	J7KDH9	Streptococcus_phage	1.1e-48	100.0
WP_017647944.1\|1222380_1222728_-	hypothetical protein	J7KK12	Streptococcus_phage	1.4e-60	100.0
WP_017647868.1\|1222717_1223194_-	RusA family crossover junction endodeoxyribonuclease	J7KBT1	Streptococcus_phage	5.1e-61	100.0
WP_017285433.1\|1223183_1223381_-	hypothetical protein	J7KIX6	Streptococcus_phage	2.3e-28	100.0
WP_017648348.1\|1223543_1224341_-	hypothetical protein	J7KGZ1	Streptococcus_phage	2.3e-154	100.0
WP_017648347.1\|1224337_1225300_-	recombinase RecT	J7KDK3	Streptococcus_phage	1.1e-179	100.0
WP_017648346.1\|1225302_1225632_-	hypothetical protein	J7KGX3	Streptococcus_phage	1.1e-54	99.1
WP_017648344.1\|1225797_1226052_-	hypothetical protein	J7KK18	Streptococcus_phage	9.7e-43	100.0
WP_000431576.1\|1226038_1226314_-	hypothetical protein	J7KJY6	Streptococcus_phage	1.2e-43	100.0
WP_000821202.1\|1226449_1227220_-	ATP-binding protein	J7KK37	Streptococcus_phage	5.6e-142	100.0
WP_161508515.1\|1227228_1228119_-	prephenate dehydrogenase	J7KBV5	Streptococcus_phage	6.0e-140	93.9
WP_017648341.1\|1228129_1228354_-	hypothetical protein	J7KBY5	Streptococcus_phage	7.5e-31	81.1
WP_000020983.1\|1228355_1228625_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000727654.1\|1228700_1228877_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_017648339.1\|1229247_1229436_-	hypothetical protein	NA	NA	NA	NA
WP_017648336.1\|1229949_1230861_-	hypothetical protein	J7KDG2	Streptococcus_phage	1.5e-130	89.1
WP_001166512.1\|1230908_1231097_-	helix-turn-helix transcriptional regulator	A0A0B5A7F0	Streptococcus_phage	1.8e-14	65.0
WP_000074050.1\|1231169_1231394_+	hypothetical protein	NA	NA	NA	NA
WP_017285238.1\|1231364_1231625_-	hypothetical protein	NA	NA	NA	NA
WP_000245837.1\|1231677_1232556_+	DUF4393 domain-containing protein	NA	NA	NA	NA
WP_000274022.1\|1232953_1233136_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_017648332.1\|1233757_1234540_+	helix-turn-helix transcriptional regulator	J7KJ52	Streptococcus_phage	9.2e-92	68.9
1242557:1242574	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1640361 : 1651094

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767486.1\|1640361_1641189_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.1e-124	78.0
WP_000287943.1\|1641229_1641586_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
WP_000966772.1\|1641587_1642064_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000232151.1\|1642119_1643301_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	3.1e-168	75.6
WP_001167084.1\|1643363_1643912_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	2.2e-55	59.0
WP_000158399.1\|1643979_1645071_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
WP_000603274.1\|1645203_1645839_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_000425861.1\|1646108_1646978_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.4e-109	70.4
WP_000358198.1\|1646977_1647304_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364568.1\|1647334_1648198_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
WP_000715591.1\|1648217_1648853_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.9e-67	61.1
WP_001144250.1\|1648941_1649601_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	3.6e-65	56.9
WP_000178146.1\|1649619_1650330_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.5
WP_001185985.1\|1650329_1651094_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage