CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP027113	Enterobacter hormaechei strain BW plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP027112	Enterobacter hormaechei strain BW plasmid unnamed1, complete sequence	0 crisprs	csa3	0	3
NZ_CP027111	Enterobacter hormaechei strain BW chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL,RT,DinG,cas3,PD-DExK	5	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

54605 : 59874

uncultured_Caudovirales_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000130816.1\|54605_55310_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000941305.1\|55396_55717_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_161503957.1\|55762_57052_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-167	71.2
WP_000065802.1\|57064_57490_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_161503958.1\|57549_58377_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.6e-46	39.2
WP_000927306.1\|58395_59874_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4

DBSCAN-SWA_2

73855 : 134720

Escherichia_phage(30.0%)

integrase,transposase

attL 77288:77347|attR 126580:127399

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072196614.1\|73855_74824_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_001572373.1\|75012_76632_+	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_001572372.1\|76708_77185_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
77288:77347	attL	NA	NA	NA	NA
WP_001067855.1\|77350_78055_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_045344018.1\|81216_81759_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_045344019.1\|81767_82301_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_045344021.1\|82308_83136_+	hypothetical protein	NA	NA	NA	NA
WP_072210013.1\|83174_83714_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_060635798.1\|83731_84478_+	hypothetical protein	NA	NA	NA	NA
WP_171817557.1\|84716_85157_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_042863089.1\|85291_85621_+	multidrug transporter	NA	NA	NA	NA
WP_042863090.1\|85748_86354_-	hypothetical protein	NA	NA	NA	NA
WP_052215425.1\|86630_87383_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042863091.1\|87393_87876_+	hypothetical protein	NA	NA	NA	NA
WP_022646508.1\|88981_89548_-	hypothetical protein	NA	NA	NA	NA
WP_022646507.1\|89544_89808_-	hypothetical protein	NA	NA	NA	NA
WP_022646506.1\|90083_91121_+	hypothetical protein	NA	NA	NA	NA
WP_007372364.1\|91117_91408_+	hypothetical protein	NA	NA	NA	NA
WP_007372363.1\|91939_92320_-	hypothetical protein	NA	NA	NA	NA
WP_007372362.1\|93299_94709_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_007372361.1\|94708_95719_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000859348.1\|95744_95891_+	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_161503959.1\|96051_97203_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_001141269.1\|97888_98164_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000765646.1\|98528_98960_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000038427.1\|99151_101803_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-156	33.8
WP_000233327.1\|102006_103317_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000440264.1\|103334_104165_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000664785.1\|104212_105547_-	DUF3422 family protein	NA	NA	NA	NA
WP_000070400.1\|105704_106103_-	VOC family protein	NA	NA	NA	NA
WP_000842119.1\|106153_107263_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.8e-32	30.3
WP_001120775.1\|107321_107597_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000103071.1\|107883_109860_+	excinuclease ABC subunit UvrB	A7WKH8	Acidianus_filamentous_virus	7.1e-08	39.0
WP_000699996.1\|110161_110428_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000139428.1\|110476_111190_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_085954987.1\|112270_112459_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001270901.1\|112574_113405_+	hypothetical protein	NA	NA	NA	NA
WP_000215804.1\|113556_116244_+	hypothetical protein	NA	NA	NA	NA
WP_001217270.1\|116413_118243_-	hypothetical protein	NA	NA	NA	NA
WP_007372357.1\|118449_118587_-	hypothetical protein	NA	NA	NA	NA
WP_022646501.1\|118764_119094_-	hypothetical protein	NA	NA	NA	NA
WP_000151478.1\|119988_120924_-	hypothetical protein	NA	NA	NA	NA
WP_000981293.1\|121102_121930_+	ParA family protein	J9QE36	Clostridium_phage	2.0e-12	27.4
WP_007372356.1\|121956_122214_+	hypothetical protein	NA	NA	NA	NA
WP_000778342.1\|122389_123085_-	hypothetical protein	NA	NA	NA	NA
WP_001071437.1\|123615_124239_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_000174662.1\|125401_126166_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.9e-25	52.4
WP_001067855.1\|126642_127347_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_087776199.1\|131223_132431_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-101	62.7
126580:127399	attR	NA	NA	NA	NA
WP_001371925.1\|132633_133014_+	hypothetical protein	NA	NA	NA	NA
WP_000019450.1\|133739_134720_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1

DBSCAN-SWA_3

145366 : 180791

Shigella_phage(14.29%)

protease,integrase,transposase

attL 150643:150702|attR 165761:167110

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000462754.1\|145366_146023_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_000341066.1\|146681_147074_-	hypothetical protein	NA	NA	NA	NA
WP_000211823.1\|147994_148981_+	hypothetical protein	NA	NA	NA	NA
150643:150702	attL	NA	NA	NA	NA
WP_000427623.1\|150919_151924_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_003100847.1\|152002_152560_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_021243030.1\|152553_152925_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|152921_153422_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|153418_153745_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|153999_154356_-	cupin domain-containing protein	NA	NA	NA	NA
WP_161503960.1\|154345_154747_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_001247892.1\|154743_155034_-	nucleotidyltransferase	NA	NA	NA	NA
WP_000427614.1\|155479_156484_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_010981353.1\|156562_156997_-	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA
WP_077269372.1\|156926_157280_+	hypothetical protein	NA	NA	NA	NA
WP_000761850.1\|157294_157933_+	organomercurial lyase MerB	NA	NA	NA	NA
WP_000995361.1\|158044_158410_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_005413392.1\|158406_158643_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_010981356.1\|158658_158979_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_010981357.1\|159017_159632_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	5.1e-37	51.0
WP_011405615.1\|159692_160910_-	TniQ family protein	NA	NA	NA	NA
WP_000393453.1\|160906_161815_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_010791757.1\|161817_163500_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	3.7e-05	24.7
WP_072135327.1\|164000_165404_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-106	50.9
WP_000427623.1\|166037_167042_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_107835450.1\|167126_167288_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
165761:167110	attR	NA	NA	NA	NA
WP_004729622.1\|167481_168234_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001567390.1\|168474_169344_+	DMT family transporter	NA	NA	NA	NA
WP_023287190.1\|169477_170701_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004729618.1\|170886_171660_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_020277918.1\|171725_172427_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_006687059.1\|172492_173599_-	alkene reductase	NA	NA	NA	NA
WP_002431133.1\|173812_174142_+	thioredoxin family protein	V9SJ74	Achromobacter_phage	1.3e-10	34.7
WP_020277919.1\|174171_174510_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_020277920.1\|174514_175096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000108589.1\|175237_175795_-	OsmC family protein	NA	NA	NA	NA
WP_012695450.1\|175979_176564_-	recombinase family protein	A0A219YA40	Aeromonas_phage	2.0e-22	36.1
WP_021242989.1\|176723_179708_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.8e-306	54.3
WP_000427623.1\|179786_180791_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP027111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP027111_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP027111_1

1592598-1592810

Orphan

I-F

Consensus_repeat	Method
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCT	PILER-CR
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CRT

3 spacers

The CRISPR arrays of NZ_CP027111_1

>merge|NZ_CP027111|1|1592598-1592810|PILER-CR,CRISPRCasFinder,CRT
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCTAACTGCCAGACTTCCTGGCTTTCTCCCTCGTTCACTGCCGGGCAGGCAGCTTAGAAATACGGCGACACCGACACGCGCCAGCGTGTTTTGTTCACTGCCGGGCAGGCAGCTTAGAAATCTTGCCTGATTTGCTCATGCCTTTAGTCACGGTTCACTGCCGTACAGGCCGTAGGCACAA

>NZ_CP027111|1|1|1592598-1592752|PILER-CR
TTCAGTTCACTGCCGGGCAGGCAGCTTAGAAATCT	AACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAATACGGCG	ACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAATCT

>NZ_CP027111|1|1|1592602-1592750|CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	ACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT

>NZ_CP027111|1|1|1592602-1592810|CRT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTAACTGCCAGACTTCCTGGCTTTCTCCCTC
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	ACGGCGACACCGACACGCGCCAGCGTGTTTT
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CTTGCCTGATTTGCTCATGCCTTTAGTCACG
GTTCACTGCCGTACAGGCCGTAGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP027111.1\|WP_058672411.1\|1585060_1586872_+\|chitinase	unknown	unknown	gnl\|CDD\|381595
NZ_CP027111.1\|WP_017384855.1\|1581680_1584383_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|119365
NZ_CP027111.1\|WP_017384846.1\|1596034_1596934_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP027111.1\|WP_006174393.1\|1604480_1604801_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP027111.1\|WP_161503793.1\|1588116_1589553_-\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP027111.1\|WP_161503795.1\|1599752_1600709_-\|DUF535-family-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP027111.1\|WP_161503794.1\|1590603_1592322_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP027111.1\|WP_015570984.1\|1601980_1603921_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP027111.1\|WP_017384851.1\|1589563_1590565_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NZ_CP027111.1\|WP_006809408.1\|1603991_1604213_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP027111.1\|WP_017384847.1\|1594237_1595890_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP027111.1\|WP_161503792.1\|1579016_1580150_+\|type-II-secretion-system-protein-GspL	unknown	unknown	gnl\|CDD\|273768
NZ_CP027111.1\|WP_017384857.1\|1580146_1580632_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
NZ_CP027111.1\|WP_017384852.1\|1587010_1588024_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP027111.1\|WP_017384854.1\|1584485_1584926_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
NZ_CP027111.1\|WP_017384856.1\|1580628_1581426_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP027111.1\|WP_017384844.1\|1598097_1599756_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP027111.1\|WP_017384842.1\|1600868_1601984_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP027111.1\|WP_017384848.1\|1593258_1594227_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
NZ_CP027111.1\|WP_026080729.1\|1597110_1597806_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453

Protein	Function_ID	Function_description	E-value
NZ_CP027111.1\|WP_058672411.1\|1585060_1586872_+\|chitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	4.3163e-72
NZ_CP027111.1\|WP_017384855.1\|1581680_1584383_+\|PKD-domain-containing-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	8.06876e-125
NZ_CP027111.1\|WP_017384846.1\|1596034_1596934_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	6.25563e-117
NZ_CP027111.1\|WP_006174393.1\|1604480_1604801_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP027111.1\|WP_161503793.1\|1588116_1589553_-\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.44722e-139
NZ_CP027111.1\|WP_161503795.1\|1599752_1600709_-\|DUF535-family-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	6.53308e-127
NZ_CP027111.1\|WP_161503794.1\|1590603_1592322_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP027111.1\|WP_015570984.1\|1601980_1603921_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP027111.1\|WP_017384851.1\|1589563_1590565_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
NZ_CP027111.1\|WP_006809408.1\|1603991_1604213_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP027111.1\|WP_017384847.1\|1594237_1595890_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP027111.1\|WP_161503792.1\|1579016_1580150_+\|type-II-secretion-system-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	3.12027e-38
NZ_CP027111.1\|WP_017384857.1\|1580146_1580632_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
NZ_CP027111.1\|WP_017384852.1\|1587010_1588024_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
NZ_CP027111.1\|WP_017384854.1\|1584485_1584926_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	5.32861e-87
NZ_CP027111.1\|WP_017384856.1\|1580628_1581426_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	9.55393e-41
NZ_CP027111.1\|WP_017384844.1\|1598097_1599756_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP027111.1\|WP_017384842.1\|1600868_1601984_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP027111.1\|WP_017384848.1\|1593258_1594227_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
NZ_CP027111.1\|WP_026080729.1\|1597110_1597806_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146

>NZ_CP027111.1|WP_161503794.1|1590603_1592322_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEVKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFTIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>NZ_CP027111.1|WP_017384851.1|1589563_1590565_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGSLPLAKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>NZ_CP027111.1|WP_161503793.1|1588116_1589553_-|DUF2867-domain-containing-protein
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLQKLHLPGVTCHNVDLSWPKALPVLLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRNALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDLALRALIPQELIRFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRENN
>NZ_CP027111.1|WP_017384852.1|1587010_1588024_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>NZ_CP027111.1|WP_058672411.1|1585060_1586872_+|chitinase
MNKRTLLSVLIAGACVAPLMAQAANLKETSSEPYTIKASDLAKKEKELTDFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDDGSSVTPDETPVTPTPTPSGDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLGAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>NZ_CP027111.1|WP_017384854.1|1584485_1584926_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGIDEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>NZ_CP027111.1|WP_017384855.1|1581680_1584383_+|PKD-domain-containing-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLAQGVQPGKIVVGAGMYGRGWTGVHGYTGDNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDTTAEAPYIFNKSTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDSTPVDPVVTNHAPIASSADQNVFGPATVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDVQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGTDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>NZ_CP027111.1|WP_017384856.1|1580628_1581426_+|prepilin-peptidase
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>NZ_CP027111.1|WP_017384857.1|1580146_1580632_+|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>NZ_CP027111.1|WP_161503792.1|1579016_1580150_+|type-II-secretion-system-protein-GspL
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGHGRAAKSMKAAMVAVGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQHTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMESELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>NZ_CP027111.1|WP_017384848.1|1593258_1594227_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSRELLQSVPDIANRIVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>NZ_CP027111.1|WP_017384847.1|1594237_1595890_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>NZ_CP027111.1|WP_017384846.1|1596034_1596934_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIMGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP027111.1|WP_026080729.1|1597110_1597806_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP027111.1|WP_017384844.1|1598097_1599756_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEEDLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP027111.1|WP_161503795.1|1599752_1600709_-|DUF535-family-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLENLVKQPRLMQILRVQPGLPCRLHRPWLTVNMDRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLLIGGMQGAKAYVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQISQATAR
>NZ_CP027111.1|WP_017384842.1|1600868_1601984_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP027111.1|WP_015570984.1|1601980_1603921_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP027111.1|WP_006809408.1|1603991_1604213_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP027111.1|WP_006174393.1|1604480_1604801_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972693	Salmonella phage SI23, complete genome	6397-6427	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK770415	Salmonella phage SF11, complete genome	15202-15232	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972694	Salmonella phage SE22, complete genome	27485-27515	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK770414	Salmonella phage SE16, complete genome	19098-19128	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	NC_013059	Salmonella phage c341, complete genome	37506-37536	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972686	Salmonella phage SF3, complete genome	38552-38582	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972685	Salmonella phage SE10, complete genome	39771-39801	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972687	Salmonella phage SE1 (in:P22virus), complete genome	30045-30075	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	FJ000341	Salmonella phage g341c, complete genome	37506-37536	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	EU570103	Salmonella phage epsilon34, complete genome	39547-39577	2	0.935
NZ_CP027111_1	1.5\|1592751\|31\|NZ_CP027111\|CRT	1592751-1592781	31	MK972692	Salmonella phage SE21, complete genome	26621-26651	2	0.935
NZ_CP027111_1	1.2\|1592697\|25\|NZ_CP027111\|PILER-CR	1592697-1592721	25	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714190-714214	4	0.84
NZ_CP027111_1	1.2\|1592697\|25\|NZ_CP027111\|PILER-CR	1592697-1592721	25	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62536-62560	4	0.84
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	21037-21067	6	0.806
NZ_CP027111_1	1.1\|1592633\|29\|NZ_CP027111\|PILER-CR	1592633-1592661	29	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36363	7	0.759
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	26631-26661	7	0.774
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1534665-1534695	7	0.774
NZ_CP027111_1	1.3\|1592631\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592631-1592661	31	NC_023006	Pseudomonas phage PPpW-3 DNA, complete sequence	36335-36365	8	0.742
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	62534-62564	8	0.742
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	283146-283176	8	0.742
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	22328-22358	9	0.71
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	475099-475129	9	0.71
NZ_CP027111_1	1.4\|1592691\|31\|NZ_CP027111\|CRISPRCasFinder,CRT	1592691-1592721	31	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	714186-714216	10	0.677

1. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972693 (Salmonella phage SI23, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

2. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK770415 (Salmonella phage SF11, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

3. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972694 (Salmonella phage SE22, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

4. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK770414 (Salmonella phage SE16, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

5. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to NC_013059 (Salmonella phage c341, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

6. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972686 (Salmonella phage SF3, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

7. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972685 (Salmonella phage SE10, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

8. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972687 (Salmonella phage SE1 (in:P22virus), complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

9. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to FJ000341 (Salmonella phage g341c, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

10. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to EU570103 (Salmonella phage epsilon34, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

11. spacer 1.5|1592751|31|NZ_CP027111|CRT matches to MK972692 (Salmonella phage SE21, complete genome) position: , mismatch: 2, identity: 0.935

cttgcctgatttgctcatgcctttagtcacg	CRISPR spacer
cctgcctgatttgctcatgccattagtcacg	Protospacer
*.******************* *********

12. spacer 1.2|1592697|25|NZ_CP027111|PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgacaccgacacgcgccagcgtg	CRISPR spacer
ggcgactccgacccgcgccagcgcc	Protospacer
****** ***** **********.

13. spacer 1.2|1592697|25|NZ_CP027111|PILER-CR matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 4, identity: 0.84

ggcgacaccgacacgcgccagcgtg	CRISPR spacer
ggcgacaccgacactcgcccgcgat	Protospacer
************** **** ***

14. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 6, identity: 0.806

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcattgt	Protospacer
**********.** ********* *..** *

15. spacer 1.1|1592633|29|NZ_CP027111|PILER-CR matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 7, identity: 0.759

aactgccagacttcctggctttctccctc	CRISPR spacer
tgctgcccgacttcctggccttctcgccg	Protospacer
 .***** ***********.***** *.

16. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

17. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

18. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

19. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

20. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

21. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

22. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

23. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

24. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
acggcgacactgaaacgcgccagagcatagt	Protospacer
**********.** ********* *..*  *

25. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acggcgacaccgacacgcgccag----cgtgtttt	CRISPR spacer
acggcgagaccgtcacgcgccaggtgccggg----	Protospacer
******* **** **********    ** *

26. spacer 1.3|1592631|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NC_023006 (Pseudomonas phage PPpW-3 DNA, complete sequence) position: , mismatch: 8, identity: 0.742

ctaactgccagacttcctggctttctccctc	CRISPR spacer
tttgctgcccgacttcctggccttctcgccg	Protospacer
.* .***** ***********.***** *.

27. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
gcggcgacaccgacactcgcccgcgatctca	Protospacer
.*************** **** ***  .*.

28. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
tcggcgatgccgacacgcgccagcagttcta	Protospacer
 ******..***************.  *.*

29. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacatcgacacgcggcagcccaggat	Protospacer
 ********.********* **** ..   *

30. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.71

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ccggcgacaccgacacccggcagcccaggat	Protospacer
 *************** ** **** ..   *

31. spacer 1.4|1592691|31|NZ_CP027111|CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.677

acggcgacaccgacacgcgccagcgtgtttt	CRISPR spacer
ggggcgactccgacccgcgccagcgccgcag	Protospacer
. ****** ***** **********.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1816096 : 1823125

Escherichia_phage(33.33%)

integrase

attL 1810320:1810332|attR 1818299:1818311

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1810320:1810332	attL	NA	NA	NA	NA
WP_022650038.1\|1816096_1816876_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.5e-51	89.3
WP_022650037.1\|1816974_1817253_-	hypothetical protein	NA	NA	NA	NA
WP_022650036.1\|1817252_1817891_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	5.8e-44	44.9
WP_022650035.1\|1818134_1819106_+	hypothetical protein	A0A222YXF2	Escherichia_phage	2.2e-66	42.9
1818299:1818311	attR	NA	NA	NA	NA
WP_022650034.1\|1819110_1819500_+	hypothetical protein	NA	NA	NA	NA
WP_022650033.1\|1819503_1820775_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.9e-156	63.7
WP_022650032.1\|1820774_1821203_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.3e-28	51.6
WP_080332517.1\|1821333_1821591_+	DUF1472 domain-containing protein	NA	NA	NA	NA
WP_022650031.1\|1821568_1822036_+	hypothetical protein	NA	NA	NA	NA
WP_022650030.1\|1822432_1823125_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	5.7e-29	36.7

DBSCAN-SWA_2

1869639 : 1922426

Ralstonia_phage(20.0%)

integrase,transposase

attL 1887377:1887436|attR 1922430:1923250

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088263190.1\|1869639_1870773_-\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	1.1e-42	40.2
WP_022649980.1\|1871373_1872711_-	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA
WP_022649979.1\|1872707_1873382_-	prepilin peptidase	NA	NA	NA	NA
WP_022649978.1\|1873366_1873924_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_022649977.1\|1873933_1874548_-	hypothetical protein	NA	NA	NA	NA
WP_032623575.1\|1874561_1875656_-	type II secretion system F family protein	NA	NA	NA	NA
WP_022649975.1\|1875648_1877208_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_022649974.1\|1877210_1877726_-	type IV pilus biogenesis protein PilP	NA	NA	NA	NA
WP_022649973.1\|1877709_1879014_-	type 4b pilus protein PilO2	NA	NA	NA	NA
WP_022649972.1\|1879015_1880692_-	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA
WP_022649971.1\|1880706_1881144_-	type IV pilus biogenesis protein PilM	NA	NA	NA	NA
WP_032623573.1\|1881143_1882241_-	TcpQ domain-containing protein	NA	NA	NA	NA
WP_022650068.1\|1882255_1882762_-	hypothetical protein	NA	NA	NA	NA
WP_022650067.1\|1882835_1883462_-	hypothetical protein	NA	NA	NA	NA
WP_022650066.1\|1883483_1884155_-	hypothetical protein	NA	NA	NA	NA
WP_032623570.1\|1884389_1884899_-	transcription termination factor NusG	NA	NA	NA	NA
WP_022650064.1\|1885184_1885445_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_022650063.1\|1885897_1886560_-	PAS domain-containing protein	NA	NA	NA	NA
1887377:1887436	attL	NA	NA	NA	NA
WP_001067855.1\|1887439_1888144_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001381192.1\|1888634_1889627_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_000376623.1\|1889595_1890096_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|1890223_1891063_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|1891056_1891404_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001206356.1\|1891567_1892359_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001336345.1\|1892364_1892655_-	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001083725.1\|1892766_1893264_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845054.1\|1893408_1894422_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_000454193.1\|1894624_1894975_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001161490.1\|1895150_1895711_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|1895714_1898681_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_174241491.1\|1898677_1898872_-	hypothetical protein	NA	NA	NA	NA
WP_032623594.1\|1898882_1899545_-	hypothetical protein	NA	NA	NA	NA
WP_022650047.1\|1899495_1900113_-	hypothetical protein	NA	NA	NA	NA
WP_012477564.1\|1900412_1901003_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_001493762.1\|1901139_1901712_+	recombinase family protein	A0JC18	Ralstonia_phage	9.9e-19	38.5
WP_001493761.1\|1901748_1903140_+\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
WP_001516695.1\|1903919_1904576_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_012477595.1\|1906172_1907030_-	class A beta-lactamase LAP-2	Q1MVP3	Enterobacteria_phage	2.0e-92	61.1
WP_161503965.1\|1907094_1908825_-	cell division protein FtsI	NA	NA	NA	NA
WP_032635084.1\|1909042_1910203_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_022650051.1\|1910478_1911348_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_022650052.1\|1911356_1911863_-	hypothetical protein	NA	NA	NA	NA
WP_022650053.1\|1911941_1912427_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_022650054.1\|1912565_1913369_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_022650055.1\|1913733_1915281_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_022650056.1\|1915400_1916033_+	LysE family transporter	NA	NA	NA	NA
WP_022650057.1\|1916212_1916608_+	hypothetical protein	NA	NA	NA	NA
WP_154591405.1\|1916772_1916940_-	hypothetical protein	NA	NA	NA	NA
WP_022650058.1\|1916953_1917523_-	AAA family ATPase	A0A219VHB7	Ochrobactrum_phage	8.6e-23	55.8
WP_022650059.1\|1917738_1918866_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_022650060.1\|1918967_1919753_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_161508576.1\|1920827_1921682_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001067855.1\|1921721_1922426_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
1922430:1923250	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2976782 : 2985811

Salmonella_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072196614.1\|2976782_2977751_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_058672335.1\|2978064_2979471_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.1e-37	28.3
WP_058672336.1\|2979560_2980646_+	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	1.4e-98	52.6
WP_017693099.1\|2980646_2981528_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.0e-104	62.7
WP_017693100.1\|2981767_2982934_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.8e-112	54.2
WP_047055211.1\|2982982_2983987_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	2.5e-33	28.7
WP_047055210.1\|2984179_2985160_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_017383295.1\|2985199_2985811_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	1.6e-14	29.3

DBSCAN-SWA_4

3175258 : 3226034

Cronobacter_phage(26.67%)

integrase,terminase,head,coat

attL 3177444:3177473|attR 3224093:3224122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003859784.1\|3175258_3175489_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
WP_017384342.1\|3175626_3175998_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_045341273.1\|3175999_3176869_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_003859787.1\|3176885_3177224_+	YebY family protein	NA	NA	NA	NA
3177444:3177473	attL	NA	NA	NA	NA
WP_161503863.1\|3177546_3178632_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	4.3e-148	69.0
WP_023300430.1\|3178600_3178873_-	hypothetical protein	A0A2H4J5E1	uncultured_Caudovirales_phage	2.9e-29	64.4
WP_049125635.1\|3178993_3179515_-	hypothetical protein	NA	NA	NA	NA
WP_161503862.1\|3179571_3179784_-	TraR/DksA C4-type zinc finger protein	M1FQT7	Enterobacteria_phage	5.8e-17	66.7
WP_161503861.1\|3179875_3180067_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.9e-14	66.1
WP_161503860.1\|3180063_3180381_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	3.5e-34	60.8
WP_161503859.1\|3180364_3180880_-	HNH endonuclease	A0A1B1PDT8	Salmonella_phage	4.7e-36	49.0
WP_161503858.1\|3180876_3181095_-	hypothetical protein	NA	NA	NA	NA
WP_161503857.1\|3181091_3181751_-	DNA methyltransferase	G8C7S6	Escherichia_phage	4.6e-121	92.7
WP_049125852.1\|3181747_3181900_-	DUF1317 family protein	T1SAR0	Salmonella_phage	2.1e-05	44.2
WP_121926622.1\|3181896_3182325_-	regulator	M9NYX4	Enterobacteria_phage	1.2e-72	95.8
WP_161503856.1\|3182321_3182945_-	YqaJ viral recombinase family protein	S0A2A9	Cellulophaga_phage	2.1e-46	49.0
WP_161503855.1\|3182941_3183250_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	2.9e-09	33.3
WP_063137355.1\|3183441_3183675_-	hypothetical protein	I2GUH8	Acinetobacter_phage	2.4e-11	48.6
WP_161503854.1\|3183686_3183971_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.9e-47	96.8
WP_001752704.1\|3184049_3184256_-	cell division protein FtsZ	G8C7T2	Escherichia_phage	3.6e-32	100.0
WP_174241495.1\|3184252_3184411_-	hypothetical protein	G8C7T3	Escherichia_phage	3.5e-19	88.5
WP_094948500.1\|3184569_3184854_-	hypothetical protein	NA	NA	NA	NA
WP_023300413.1\|3185326_3186019_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.5e-58	52.8
WP_001514164.1\|3186146_3186398_+	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	9.0e-17	54.7
WP_161503853.1\|3186427_3186970_+	regulator	M9NZI6	Enterobacteria_phage	1.9e-88	91.7
WP_161503852.1\|3187055_3187964_+	replication protein	K7PGZ0	Enterobacteria_phage	3.0e-155	97.0
WP_161503851.1\|3187960_3188650_+	phage replication protein	G8C7U6	Escherichia_phage	1.6e-127	96.9
WP_161503850.1\|3188651_3188996_+	helix-turn-helix transcriptional regulator	G8C7U7	Escherichia_phage	5.7e-54	92.9
WP_174241492.1\|3188992_3189352_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	1.2e-19	45.8
WP_161503849.1\|3189348_3189630_+	hypothetical protein	NA	NA	NA	NA
WP_161503848.1\|3189626_3190055_+	ead/Ea22-like family protein	NA	NA	NA	NA
WP_058655463.1\|3191003_3191285_+	hypothetical protein	NA	NA	NA	NA
WP_161503847.1\|3191495_3191951_+	recombination protein NinB	I6PD71	Cronobacter_phage	3.1e-60	66.9
WP_032644891.1\|3191950_3192121_+	NinE family protein	K7P7K0	Enterobacteria_phage	2.6e-20	94.3
WP_015964709.1\|3192113_3192404_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.3e-46	91.7
WP_161503846.1\|3192400_3192763_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.9e-52	83.2
WP_161503845.1\|3192872_3193562_+	antiterminator	I6PDF8	Cronobacter_phage	2.2e-57	52.2
WP_032141950.1\|3194290_3194611_+	hypothetical protein	H6WRZ3	Salmonella_phage	3.7e-39	79.0
WP_045324672.1\|3194603_3195119_+	lysozyme	I6PBN2	Cronobacter_phage	8.8e-51	62.9
WP_126496833.1\|3195115_3195493_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.7e-14	37.6
WP_042863127.1\|3195916_3196435_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	1.6e-92	98.8
WP_003859853.1\|3197034_3197265_+	hypothetical protein	NA	NA	NA	NA
WP_161503844.1\|3197483_3198134_+	hypothetical protein	G8C7P2	Escherichia_phage	6.0e-113	99.5
WP_161503843.1\|3198130_3199699_+\|terminase	terminase	G8C7P3	Escherichia_phage	8.9e-304	92.5
WP_161503842.1\|3199710_3201162_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	4.8e-118	50.1
WP_161503951.1\|3201085_3202084_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	7.1e-113	68.0
WP_164558558.1\|3202149_3202326_+	hypothetical protein	NA	NA	NA	NA
WP_161503841.1\|3202385_3203756_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	6.7e-122	52.5
WP_015571555.1\|3203755_3204217_+	hypothetical protein	A0A173GBX5	Salmonella_phage	9.1e-31	49.7
WP_032668715.1\|3204213_3205269_+\|coat	phage coat protein	A0A291AXD4	Shigella_phage	3.5e-102	53.5
WP_032668716.1\|3205301_3205535_+	hypothetical protein	NA	NA	NA	NA
WP_023306305.1\|3205611_3205995_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.5e-47	75.6
WP_023306304.1\|3206096_3206645_+	HNH endonuclease	K9L517	Pectobacterium_phage	9.4e-35	42.2
WP_045142326.1\|3206698_3206872_+	hypothetical protein	I6R0P9	Salmonella_phage	5.1e-11	50.0
WP_161503840.1\|3206871_3207228_+	hypothetical protein	G0ZNE2	Cronobacter_phage	3.6e-27	56.4
WP_045142327.1\|3207230_3207599_+	hypothetical protein	F1C5E3	Cronobacter_phage	2.5e-47	77.9
WP_045332036.1\|3207595_3207985_+	hypothetical protein	F1C5E4	Cronobacter_phage	2.4e-32	51.6
WP_161503839.1\|3208054_3208807_+	Ig-like domain-containing protein	G0ZNE6	Cronobacter_phage	3.8e-42	44.7
WP_032668721.1\|3208857_3209553_+	hypothetical protein	G0ZNE7	Cronobacter_phage	1.1e-67	56.2
WP_032668722.1\|3209661_3210024_+	hypothetical protein	NA	NA	NA	NA
WP_161503838.1\|3210081_3212388_+	tape measure protein	A0A1B1W284	Salmonella_phage	3.4e-110	43.4
WP_017693207.1\|3212398_3212626_+	hypothetical protein	NA	NA	NA	NA
WP_016245414.1\|3212667_3213165_+	hypothetical protein	F1C5F0	Cronobacter_phage	3.5e-89	91.5
WP_128613389.1\|3213164_3213635_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.8e-79	93.6
WP_161503950.1\|3213648_3214014_+	C40 family peptidase	F1C5F2	Cronobacter_phage	1.4e-63	91.6
WP_161503837.1\|3214000_3216478_+	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
WP_174241493.1\|3216536_3218705_+	hypothetical protein	A0A2P1MXB7	Escherichia_phage	3.5e-16	35.5
WP_058677604.1\|3218868_3219582_-	LexA family transcriptional regulator	A0A2H4J245	uncultured_Caudovirales_phage	1.7e-07	24.0
WP_161503836.1\|3219659_3219833_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_058677603.1\|3219825_3220533_+	hypothetical protein	H6WRU8	Salmonella_phage	1.8e-41	43.6
WP_058677607.1\|3220601_3221375_+	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	1.3e-82	67.8
WP_174241494.1\|3221526_3221835_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.1e-11	44.4
WP_023306289.1\|3221834_3223103_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	5.8e-229	91.5
WP_161503835.1\|3223095_3223767_-	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.3e-80	59.9
WP_045341271.1\|3224241_3225222_-	DUF535 domain-containing protein	NA	NA	NA	NA
3224093:3224122	attR	NA	NA	NA	NA
WP_045341270.1\|3225389_3226034_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.3e-55	49.3

DBSCAN-SWA_5

3559093 : 3659503

Cronobacter_phage(63.64%)

holin,capsid,integrase,head,transposase,tail,tRNA,terminase,portal,plate

attL 3605253:3605268|attR 3653413:3653428

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017383553.1\|3559093_3559831_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_017383554.1\|3559963_3561292_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-48	33.5
WP_003860727.1\|3561344_3561728_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.1e-33	71.8
WP_003860729.1\|3562043_3562733_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	7.9e-55	48.8
WP_017383555.1\|3562772_3563858_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_003860733.1\|3564062_3564482_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-13	37.2
WP_015572132.1\|3564552_3565251_+	DTW domain-containing protein	NA	NA	NA	NA
WP_017383556.1\|3565286_3567950_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_026080626.1\|3568059_3569415_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003860739.1\|3569460_3569784_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_017383558.1\|3569780_3571088_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.5e-43	29.6
WP_006811623.1\|3571239_3571692_-	DUF4385 domain-containing protein	M4QHR1	Cyanophage	3.9e-34	50.0
WP_017383975.1\|3577234_3579808_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
WP_017383976.1\|3579937_3580669_-	polyphenol oxidase	NA	NA	NA	NA
WP_017383977.1\|3580665_3581646_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_003863164.1\|3581777_3582515_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003863162.1\|3582782_3583124_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100229775.1\|3583229_3583277_+	hypothetical protein	NA	NA	NA	NA
WP_015571567.1\|3583384_3584545_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_161503897.1\|3584541_3585414_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_006811631.1\|3585474_3586596_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_006811632.1\|3586606_3587677_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.5e-89	51.5
WP_017383979.1\|3587888_3588263_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_017383980.1\|3588416_3588953_+	YfiR family protein	NA	NA	NA	NA
WP_017692859.1\|3588945_3590166_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_017382956.1\|3590178_3590664_+	OmpA family protein	NA	NA	NA	NA
WP_017382957.1\|3590666_3592037_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_017382958.1\|3592075_3592480_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|3592612_3592960_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_003863138.1\|3593003_3593771_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015571575.1\|3593802_3594342_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3594357_3594606_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_003863132.1\|3594722_3596084_-	signal recognition particle protein	NA	NA	NA	NA
WP_014832951.1\|3596250_3597042_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_026080585.1\|3597061_3598348_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003863126.1\|3598400_3598994_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_017383004.1\|3599116_3599995_+	NAD(+) kinase	NA	NA	NA	NA
WP_017383005.1\|3600080_3601742_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003863121.1\|3601880_3602219_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_017383006.1\|3602327_3602615_-	RnfH family protein	NA	NA	NA	NA
WP_006811645.1\|3602604_3603081_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003863115.1\|3603198_3603681_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.8e-29	46.8
WP_063159591.1\|3604226_3604499_-	hypothetical protein	NA	NA	NA	NA
WP_161503898.1\|3605117_3606794_-	hypothetical protein	F1BUJ7	Cronobacter_phage	1.6e-205	63.4
3605253:3605268	attL	NA	NA	NA	NA
WP_045891393.1\|3606796_3607345_-	protein phage	F1BUJ9	Cronobacter_phage	1.6e-63	73.5
WP_045891395.1\|3607316_3608042_-	hypothetical protein	F1BUK1	Cronobacter_phage	3.1e-62	51.0
WP_063159588.1\|3608031_3608466_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	5.7e-19	59.5
WP_080463558.1\|3608467_3610924_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	3.7e-171	58.3
WP_032657774.1\|3610933_3611521_-	hypothetical protein	F1BUK5	Cronobacter_phage	1.3e-90	80.5
WP_032657771.1\|3611513_3612698_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	4.8e-177	79.0
WP_063159587.1\|3612694_3613024_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	7.1e-38	73.4
WP_161503899.1\|3613020_3615333_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	2.9e-218	57.5
WP_045891402.1\|3615520_3615781_-\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	2.1e-21	62.8
WP_045891403.1\|3615900_3616269_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.0e-21	52.4
WP_032657755.1\|3616268_3616610_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	3.2e-49	89.1
WP_161503900.1\|3616606_3616903_-\|holin	holin	S4TP56	Salmonella_phage	1.2e-15	49.0
WP_032657750.1\|3616912_3617368_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	5.4e-60	73.5
WP_039268766.1\|3617364_3618492_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	4.3e-175	82.7
WP_058663725.1\|3618488_3619196_-	hypothetical protein	F1BUL6	Cronobacter_phage	2.3e-102	78.2
WP_063159583.1\|3619192_3619699_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-64	69.1
WP_045891406.1\|3619695_3620148_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.2e-58	77.3
WP_063159582.1\|3620246_3620948_-\|terminase	terminase	F1BUM0	Cronobacter_phage	4.4e-85	66.8
WP_039268761.1\|3620950_3621973_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.6e-152	79.1
WP_039268760.1\|3622032_3622830_-\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	8.2e-64	53.1
WP_063159580.1\|3623002_3624778_+\|terminase	terminase	F1BUM5	Cronobacter_phage	8.3e-290	82.6
WP_063159579.1\|3624774_3625827_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	1.4e-159	79.2
WP_059476555.1\|3625823_3626147_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	3.1e-46	85.6
WP_063159578.1\|3626120_3626333_-	hypothetical protein	NA	NA	NA	NA
WP_063159577.1\|3626451_3628500_-	replication endonuclease	F1BUM9	Cronobacter_phage	1.2e-305	75.7
WP_032657714.1\|3628468_3628681_-	hypothetical protein	NA	NA	NA	NA
WP_063159575.1\|3628677_3629544_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	3.8e-147	93.6
WP_058656534.1\|3629537_3629837_-	DUF3850 domain-containing protein	A0A0P0I3U9	Klebsiella_phage	2.3e-11	52.6
WP_013097407.1\|3629827_3630061_-	DUF2732 family protein	NA	NA	NA	NA
WP_063159574.1\|3630127_3630529_-	hypothetical protein	F1BUN2	Cronobacter_phage	1.7e-38	53.4
WP_013097409.1\|3630528_3630957_-	hypothetical protein	F1BUN5	Cronobacter_phage	5.8e-24	49.2
WP_042863261.1\|3630946_3631141_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_063159572.1\|3631150_3631654_-	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	3.6e-57	70.1
WP_063858900.1\|3632050_3632629_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	8.9e-84	77.5
WP_063159570.1\|3632625_3633639_+\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	3.9e-175	86.6
WP_017383007.1\|3634001_3635243_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	6.3e-103	47.5
WP_017383008.1\|3635520_3635817_-	DUF3892 domain-containing protein	NA	NA	NA	NA
WP_017383010.1\|3636968_3637445_-	DMT family transporter	NA	NA	NA	NA
WP_017383011.1\|3637450_3637609_-	hypothetical protein	NA	NA	NA	NA
WP_017383012.1\|3637717_3640378_-	DEAD/DEAH box helicase family protein	A0A1B1IUI1	uncultured_Mediterranean_phage	1.7e-33	25.6
WP_161503953.1\|3640374_3647883_-	hypothetical protein	NA	NA	NA	NA
WP_017383015.1\|3648279_3649359_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_161503901.1\|3650078_3654056_-	hypothetical protein	NA	NA	NA	NA
3653413:3653428	attR	NA	NA	NA	NA
WP_161503902.1\|3654655_3658153_-	hypothetical protein	NA	NA	NA	NA
WP_042893236.1\|3658237_3658480_-	hypothetical protein	A0A2H4J5Y0	uncultured_Caudovirales_phage	4.5e-13	54.7
WP_045341431.1\|3659251_3659503_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP027112

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP027111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection