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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040931 Bifidobacterium breve strain JR01 chromosome, complete genome 4 crisprs WYL,cas3,DEDDh 0 3 1 0

Results visualization

1. NZ_CP040931
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040931_1 117598-117674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040931_2 1169634-1169812 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040931_3 1904482-1904786 Orphan NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040931_4 2183129-2183465 Orphan NA
6 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040931_3 3.2|1904565|25|NZ_CP040931|CRISPRCasFinder 1904565-1904589 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP040931_3 3.4|1904682|25|NZ_CP040931|CRISPRCasFinder 1904682-1904706 25 NZ_AP022849 Bosea sp. ANAM02 plasmid pANAM02, complete sequence 158326-158350 4 0.84
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 139667-139700 6 0.824
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1786163-1786196 7 0.794
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 NC_016654 Rhodococcus phage REQ3, complete genome 8845-8878 9 0.735
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 671609-671642 10 0.706
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1652187-1652220 10 0.706
NZ_CP040931_3 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder 1904730-1904763 34 NZ_CP048421 Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence 166344-166377 11 0.676

1. spacer 3.2|1904565|25|NZ_CP040931|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

atcctcgtagtcatcctcgaaatcg	CRISPR spacer
gcgctcgcagtcatcctcgaaatcg	Protospacer
.. ****.*****************

2. spacer 3.4|1904682|25|NZ_CP040931|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

atcctcgtagtcatcctcgaaatcg	CRISPR spacer
gcgctcgcagtcatcctcgaaatcg	Protospacer
.. ****.*****************

3. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

gtcgtcgcgatcgtcgaagtcgcgatcgt-cacgg	CRISPR spacer
gtcgtcgcgatcggtgaagtcgcgtccgcgcacg-	Protospacer
************* .********* .**. **** 

4. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.794

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ggcagcacgatcgtcgaagtcgcgatggccacgc	Protospacer
* *. *.******************* *.**** 

5. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.735

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ggtggtgtcgtcgtcgaggtcgcggtcgtcacgg	Protospacer
* .* .*. .*******.******.*********

6. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
gtcgacgccatcgtcgaagtcgcggggacaaaag	Protospacer
**** *** ***************.  .. * .*

7. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
gtcgacgccatcgtcgaagtcgcggggacaaaag	Protospacer
**** *** ***************.  .. * .*

8. spacer 3.5|1904730|34|NZ_CP040931|CRISPRCasFinder matches to NZ_CP048421 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ccgatcgcgatcgtcgtggtcgcgatcgctttga	Protospacer
 . .************ .**********.. .*.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1139895 : 1174183 46 Bifidobacterium_phage(61.11%) transposase,coat,tail,portal,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage