CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045522	Shigella flexneri strain 5908.2 chromosome, complete genome	6 crisprs	csa3,DEDDh,DinG,PrimPol,RT,cas3,c2c9_V-U4	0	3	12	0
NZ_CP045523	Shigella flexneri strain 5908.2 plasmid p5908-2	0 crisprs	DEDDh,RT	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045522_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_1

702851-702992

Orphan

Consensus_repeat	Method
AATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045522_1

>merge|NZ_CP045522|1|702851-702992|CRISPRCasFinder
AATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACA

>NZ_CP045522|1|1|702851-702992|CRISPRCasFinder
AATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACA	GGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCAC
AATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_119182041.1\|696352_696766_+\|DNA-polymerase-III-subunit-psi	unknown	unknown	gnl\|CDD\|225592
NZ_CP045522.1\|WP_000175952.1\|697963_699553_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP045522.1\|WP_119182042.1\|703026_703890_-\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NZ_CP045522.1\|WP_005114785.1\|699945_700551_+\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
NZ_CP045522.1\|WP_001272299.1\|695218_696250_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	unknown	unknown	gnl\|CDD\|181902
NZ_CP045522.1\|WP_005053752.1\|700960_702034_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013
NZ_CP045522.1\|WP_001092461.1\|696734_697181_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NZ_CP045522.1\|WP_000816463.1\|707940_709164_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP045522.1\|WP_001423769.1\|694422_694659_+\|DUF1435-domain-containing-protein	unknown	unknown	gnl\|CDD\|369291
NZ_CP045522.1\|WP_000224879.1\|709220_709940_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP045522.1\|WP_000566150.1\|710100_710364_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP045522.1\|WP_005053736.1\|713206_714589_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP045522.1\|WP_000490275.1\|700677_700839_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP045522.1\|WP_025759286.1\|712189_713158_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP045522.1\|WP_000563017.1\|702030_702813_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP045522.1\|WP_152030385.1\|706566_707889_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP045522.1\|WP_119182043.1\|703861_705403_-\|YjjI-family-glycine-radical-enzyme	unknown	unknown	gnl\|CDD\|182879
NZ_CP045522.1\|WP_025759279.1\|705660_706440_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP045522.1\|WP_025759284.1\|711439_712084_-\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP045522.1\|WP_000870701.1\|697195_697873_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_119182041.1\|696352_696766_+\|DNA-polymerase-III-subunit-psi	gnl\|CDD\|225592	COG3050, HolD, DNA polymerase III, psi subunit [DNA replication, recombination, and repair].	1.85995e-68
NZ_CP045522.1\|WP_000175952.1\|697963_699553_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP045522.1\|WP_119182042.1\|703026_703890_-\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	1.99884e-164
NZ_CP045522.1\|WP_005114785.1\|699945_700551_+\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	5.85983e-100
NZ_CP045522.1\|WP_001272299.1\|695218_696250_-\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	0
NZ_CP045522.1\|WP_005053752.1\|700960_702034_+\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	2.39026e-166
NZ_CP045522.1\|WP_001092461.1\|696734_697181_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	1.40837e-111
NZ_CP045522.1\|WP_000816463.1\|707940_709164_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP045522.1\|WP_001423769.1\|694422_694659_+\|DUF1435-domain-containing-protein	gnl\|CDD\|369291	pfam07256, DUF1435, Protein of unknown function (DUF1435). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.	1.62934e-26
NZ_CP045522.1\|WP_000224879.1\|709220_709940_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	1.02509e-171
NZ_CP045522.1\|WP_000566150.1\|710100_710364_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	2.82032e-05
NZ_CP045522.1\|WP_005053736.1\|713206_714589_+\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP045522.1\|WP_000490275.1\|700677_700839_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	4.97087e-08
NZ_CP045522.1\|WP_025759286.1\|712189_713158_+\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP045522.1\|WP_000563017.1\|702030_702813_+\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	2.16631e-176
NZ_CP045522.1\|WP_152030385.1\|706566_707889_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP045522.1\|WP_119182043.1\|703861_705403_-\|YjjI-family-glycine-radical-enzyme	gnl\|CDD\|182879	PRK10977, PRK10977, hypothetical protein; Provisional.	0
NZ_CP045522.1\|WP_025759279.1\|705660_706440_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP045522.1\|WP_025759284.1\|711439_712084_-\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	2.51903e-150
NZ_CP045522.1\|WP_000870701.1\|697195_697873_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	5.67081e-172

>NZ_CP045522.1|WP_000563017.1|702030_702813_+|metal-dependent-hydrolase
MICRFIDTHCHFDFPPFIGDEEASLQRAAQAGVGKIIVPATEAENFARVQALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRAGVVHGFSGSQQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRPEPADEIAEVLLNNTYAVFNVRG
>NZ_CP045522.1|WP_005053752.1|700960_702034_+|patatin-family-protein
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRISEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVANDTLVAEVSDAPQANDPTFNNEDLA
>NZ_CP045522.1|WP_000490275.1|700677_700839_+|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>NZ_CP045522.1|WP_005114785.1|699945_700551_+|molecular-chaperone-OsmY
MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKDYAGDTATTSEIKAKLLADDIVPSRKVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK
>NZ_CP045522.1|WP_000175952.1|697963_699553_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLNGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>NZ_CP045522.1|WP_000870701.1|697195_697873_+|pyrimidine-5'-nucleotidase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHNREQPEGIAPTWTVSSLHELEQLLCKH
>NZ_CP045522.1|WP_001092461.1|696734_697181_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM
>NZ_CP045522.1|WP_119182041.1|696352_696766_+|DNA-polymerase-III-subunit-psi
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIASPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRVNPTARAALWQQICTYEHDFFPRND
>NZ_CP045522.1|WP_001272299.1|695218_696250_-|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSCQMGDNARFSLVATANDVADCDTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGCFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>NZ_CP045522.1|WP_001423769.1|694422_694659_+|DUF1435-domain-containing-protein
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYILLPSCLALIAGIMLMIMNLNQG
>NZ_CP045522.1|WP_119182042.1|703026_703890_-|YjjW-family-glycine-radical-enzyme-activase
MNSRCALVCKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEVLSHVRKAVLFIEGITVSGGEVTTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLMIPGQVDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALYL
>NZ_CP045522.1|WP_119182043.1|703861_705403_-|YjjI-family-glycine-radical-enzyme
MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQLPAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPYVRILTQNEIDVRIKRFWRYLDRTLPDAFMHANIGPSDSPITRAILRADAQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQMRFSL
>NZ_CP045522.1|WP_025759279.1|705660_706440_+|deoxyribose-phosphate-aldolase
MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVDVVFPYRALMAGDEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRYMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP045522.1|WP_152030385.1|706566_707889_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMVLCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVILAKDENSWQEAAKAVKAAIKLADNAPESTPTVYRRISE
>NZ_CP045522.1|WP_000816463.1|707940_709164_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLIRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGHWEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMSLLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>NZ_CP045522.1|WP_000224879.1|709220_709940_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>NZ_CP045522.1|WP_000566150.1|710100_710364_-|helix-turn-helix-transcriptional-regulator
MIDLENQEREIINLMFSQRISWLAAVRIRHKLSLAEVSKMLGISINSLKQIEKTERLSSNIKSKMAEIYGCPPELLICPSWMTAEHK
>NZ_CP045522.1|WP_025759284.1|711439_712084_-|YtjB-family-periplasmic-protein
MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQLEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIARSGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDNTTNILRLMLLLSLAIGVVLTRTQLQGKRTRWQQSPFLLTASKPVPEEEESEKKE
>NZ_CP045522.1|WP_025759286.1|712189_713158_+|phosphoserine-phosphatase
MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAARSGWLLYGRGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRSRVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKLRLTAVLANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK
>NZ_CP045522.1|WP_005053736.1|713206_714589_+|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSIMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

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Crispr_ID: NZ_CP045522_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_2

793103-793214

Orphan

Consensus_repeat	Method
GCTTATCCGGTCTACAAAATCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045522_2

>merge|NZ_CP045522|2|793103-793214|CRISPRCasFinder
GCTTATCCGGTCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCG

>NZ_CP045522|2|2|793103-793214|CRISPRCasFinder
GCTTATCCGGTCTACAAAATCGCAGCG	CGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTT
GCTTATCCGGCCTACAAAATCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_025757823.1\|798666_799365_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP045522.1\|WP_000818230.1\|805285_805891_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP045522.1\|WP_001200573.1\|785278_786094_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP045522.1\|WP_000525171.1\|786210_786870_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP045522.1\|WP_001148403.1\|797788_798553_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP045522.1\|WP_025757820.1\|792378_793074_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP045522.1\|WP_025757812.1\|781330_782617_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP045522.1\|WP_000151746.1\|793273_794776_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP045522.1\|WP_025757816.1\|786881_789788_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP045522.1\|WP_025757818.1\|789952_792304_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP045522.1\|WP_001248770.1\|803825_803957_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP045522.1\|WP_005065955.1\|796824_797703_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP045522.1\|WP_000610901.1\|779143_779521_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP045522.1\|WP_025757811.1\|780341_781331_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP045522.1\|WP_000637840.1\|804058_805237_+\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP045522.1\|WP_000235706.1\|799348_800959_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP045522.1\|WP_001065381.1\|779523_780345_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP045522.1\|WP_119182030.1\|782669_785024_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP045522.1\|WP_001295536.1\|800934_801918_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP045522.1\|WP_005065968.1\|802081_803737_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_025757823.1\|798666_799365_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	4.83654e-165
NZ_CP045522.1\|WP_000818230.1\|805285_805891_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.8073e-142
NZ_CP045522.1\|WP_001200573.1\|785278_786094_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP045522.1\|WP_000525171.1\|786210_786870_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	8.45806e-159
NZ_CP045522.1\|WP_001148403.1\|797788_798553_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.87417e-49
NZ_CP045522.1\|WP_025757820.1\|792378_793074_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.13204e-178
NZ_CP045522.1\|WP_025757812.1\|781330_782617_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP045522.1\|WP_000151746.1\|793273_794776_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP045522.1\|WP_025757816.1\|786881_789788_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP045522.1\|WP_025757818.1\|789952_792304_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP045522.1\|WP_001248770.1\|803825_803957_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP045522.1\|WP_005065955.1\|796824_797703_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP045522.1\|WP_000610901.1\|779143_779521_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP045522.1\|WP_025757811.1\|780341_781331_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP045522.1\|WP_000637840.1\|804058_805237_+\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP045522.1\|WP_000235706.1\|799348_800959_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP045522.1\|WP_001065381.1\|779523_780345_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP045522.1\|WP_119182030.1\|782669_785024_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP045522.1\|WP_001295536.1\|800934_801918_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP045522.1\|WP_005065968.1\|802081_803737_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0

>NZ_CP045522.1|WP_025757820.1|792378_793074_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSDVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP045522.1|WP_025757818.1|789952_792304_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIHADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPLLLEKLNAWFANHDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWVRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP045522.1|WP_025757816.1|786881_789788_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNTVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP045522.1|WP_000525171.1|786210_786870_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARAVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP045522.1|WP_001200573.1|785278_786094_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP045522.1|WP_119182030.1|782669_785024_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTYVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP045522.1|WP_025757812.1|781330_782617_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKLSEEAASWMQEQRASAYVKILSN
>NZ_CP045522.1|WP_025757811.1|780341_781331_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDASIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGITEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP045522.1|WP_001065381.1|779523_780345_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP045522.1|WP_000610901.1|779143_779521_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP045522.1|WP_000151746.1|793273_794776_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLPVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP045522.1|WP_005065955.1|796824_797703_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGCHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPYFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP045522.1|WP_001148403.1|797788_798553_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP045522.1|WP_025757823.1|798666_799365_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIVWQGKTEELLSGKASASAILGITG
>NZ_CP045522.1|WP_000235706.1|799348_800959_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP045522.1|WP_001295536.1|800934_801918_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP045522.1|WP_005065968.1|802081_803737_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHITDIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPCEWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGDLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP045522.1|WP_001248770.1|803825_803957_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP045522.1|WP_000637840.1|804058_805237_+|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGDWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSDLGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVVAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNTISTGVILAGVIQGAIAQSWGHFAVYWVIAIISVVALFLTAKVKDV
>NZ_CP045522.1|WP_000818230.1|805285_805891_-|3-isopropylmalate-dehydratase-small-subunit
MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIGLTLQHDDAIASYEAKQPAFMN

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Crispr_ID: NZ_CP045522_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_3

1570259-1570407

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP045522_3

>merge|NZ_CP045522|3|1570259-1570407|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>NZ_CP045522|3|3|1570259-1570407|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_047563365.1\|1577789_1581896_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP045522.1\|WP_000934041.1\|1567770_1570047_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP045522.1\|WP_000886683.1\|1584106_1585399_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP045522.1\|WP_000491142.1\|1558503_1559403_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP045522.1\|WP_000228473.1\|1577160_1577655_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP045522.1\|WP_001040187.1\|1570790_1571009_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP045522.1\|WP_000599806.1\|1560979_1562638_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP045522.1\|WP_025758850.1\|1572039_1573761_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP045522.1\|WP_001241678.1\|1571293_1571998_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP045522.1\|WP_000067746.1\|1582672_1584016_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP045522.1\|WP_000746448.1\|1563741_1564857_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP045522.1\|WP_025758851.1\|1582050_1582662_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP045522.1\|WP_000520781.1\|1567419_1567740_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP045522.1\|WP_005067329.1\|1562634_1563591_-\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP045522.1\|WP_000188162.1\|1564853_1566800_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP045522.1\|WP_001043574.1\|1573761_1575528_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP045522.1\|WP_161550571.1\|1559859_1560555_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP045522.1\|WP_000410785.1\|1566872_1567097_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP045522.1\|WP_000458819.1\|1556707_1558360_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP045522.1\|WP_000537402.1\|1575650_1576616_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_047563365.1\|1577789_1581896_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP045522.1\|WP_000934041.1\|1567770_1570047_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP045522.1\|WP_000886683.1\|1584106_1585399_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP045522.1\|WP_000491142.1\|1558503_1559403_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.74036e-118
NZ_CP045522.1\|WP_000228473.1\|1577160_1577655_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP045522.1\|WP_001040187.1\|1570790_1571009_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP045522.1\|WP_000599806.1\|1560979_1562638_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP045522.1\|WP_025758850.1\|1572039_1573761_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP045522.1\|WP_001241678.1\|1571293_1571998_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
NZ_CP045522.1\|WP_000067746.1\|1582672_1584016_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP045522.1\|WP_000746448.1\|1563741_1564857_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP045522.1\|WP_025758851.1\|1582050_1582662_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	3.45399e-125
NZ_CP045522.1\|WP_000520781.1\|1567419_1567740_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP045522.1\|WP_005067329.1\|1562634_1563591_-\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	5.24558e-131
NZ_CP045522.1\|WP_000188162.1\|1564853_1566800_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP045522.1\|WP_001043574.1\|1573761_1575528_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP045522.1\|WP_161550571.1\|1559859_1560555_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.42347e-143
NZ_CP045522.1\|WP_000410785.1\|1566872_1567097_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP045522.1\|WP_000458819.1\|1556707_1558360_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP045522.1\|WP_000537402.1\|1575650_1576616_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0

>NZ_CP045522.1|WP_000934041.1|1567770_1570047_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP045522.1|WP_000520781.1|1567419_1567740_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP045522.1|WP_000410785.1|1566872_1567097_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP045522.1|WP_000188162.1|1564853_1566800_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLNIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDIATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTATGILFGWLPARNAARLDPVDALARE
>NZ_CP045522.1|WP_000746448.1|1563741_1564857_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSLQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMGGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP045522.1|WP_005067329.1|1562634_1563591_-|VirK/YbjX-family-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRCSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP045522.1|WP_000599806.1|1560979_1562638_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP045522.1|WP_161550571.1|1559859_1560555_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYAEHSPGGYSMLSALVVELILSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP045522.1|WP_000491142.1|1558503_1559403_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP045522.1|WP_000458819.1|1556707_1558360_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPSFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP045522.1|WP_001040187.1|1570790_1571009_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP045522.1|WP_001241678.1|1571293_1571998_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP045522.1|WP_025758850.1|1572039_1573761_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGSVMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAKMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP045522.1|WP_001043574.1|1573761_1575528_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAAKLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP045522.1|WP_000537402.1|1575650_1576616_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMARMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP045522.1|WP_000228473.1|1577160_1577655_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP045522.1|WP_047563365.1|1577789_1581896_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAVDPDDVLFLGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSIFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFTQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQQVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP045522.1|WP_025758851.1|1582050_1582662_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDEQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP045522.1|WP_000067746.1|1582672_1584016_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP045522.1|WP_000886683.1|1584106_1585399_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NZ_CP045522_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_4

3058237-3058363

Orphan

Consensus_repeat	Method
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045522_4

>merge|NZ_CP045522|4|3058237-3058363|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

>NZ_CP045522|4|4|3058237-3058363|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	TCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGA
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_025758937.1\|3065285_3066545_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP045522.1\|WP_000012288.1\|3043877_3045566_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP045522.1\|WP_001000362.1\|3066541_3067732_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP045522.1\|WP_000948723.1\|3062036_3063395_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP045522.1\|WP_000301058.1\|3059857_3060508_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP045522.1\|WP_000332036.1\|3058419_3059550_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP045522.1\|WP_005069859.1\|3051282_3052944_-\|AidA-family-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP045522.1\|WP_000990752.1\|3048488_3049211_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP045522.1\|WP_001281242.1\|3045714_3048342_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP045522.1\|WP_000140527.1\|3067924_3068824_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP045522.1\|WP_005069839.1\|3037465_3038188_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP045522.1\|WP_000857224.1\|3063667_3065296_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP045522.1\|WP_173020738.1\|3053007_3054237_+\|IS3-like-element-IS2-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP045522.1\|WP_161550615.1\|3039740_3040909_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP045522.1\|WP_000406458.1\|3049338_3051270_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP045522.1\|WP_001215763.1\|3043257_3043881_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP045522.1\|WP_001075180.1\|3055900_3058186_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP045522.1\|WP_000768975.1\|3060955_3062032_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP045522.1\|WP_025758941.1\|3068842_3069064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_CP045522.1\|WP_000135039.1\|3059549_3059804_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_025758937.1\|3065285_3066545_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP045522.1\|WP_000012288.1\|3043877_3045566_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP045522.1\|WP_001000362.1\|3066541_3067732_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP045522.1\|WP_000948723.1\|3062036_3063395_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP045522.1\|WP_000301058.1\|3059857_3060508_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.75717e-156
NZ_CP045522.1\|WP_000332036.1\|3058419_3059550_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP045522.1\|WP_005069859.1\|3051282_3052944_-\|AidA-family-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP045522.1\|WP_000990752.1\|3048488_3049211_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.1156e-171
NZ_CP045522.1\|WP_001281242.1\|3045714_3048342_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP045522.1\|WP_000140527.1\|3067924_3068824_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP045522.1\|WP_005069839.1\|3037465_3038188_-\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	5.05355e-54
NZ_CP045522.1\|WP_000857224.1\|3063667_3065296_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP045522.1\|WP_173020738.1\|3053007_3054237_+\|IS3-like-element-IS2-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	0
NZ_CP045522.1\|WP_161550615.1\|3039740_3040909_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.04867e-152
NZ_CP045522.1\|WP_000406458.1\|3049338_3051270_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP045522.1\|WP_001215763.1\|3043257_3043881_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	2.24238e-138
NZ_CP045522.1\|WP_001075180.1\|3055900_3058186_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP045522.1\|WP_000768975.1\|3060955_3062032_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP045522.1\|WP_025758941.1\|3068842_3069064_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	4.59328e-32
NZ_CP045522.1\|WP_000135039.1\|3059549_3059804_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.23742e-52

>NZ_CP045522.1|WP_001075180.1|3055900_3058186_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP045522.1|WP_173020738.1|3053007_3054237_+|IS3-like-element-IS2-family-transposase
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKVDSARALIARGWGVSLVSRCLRGARAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGVEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSQREYLRQRACNGLSDNRCLEI
>NZ_CP045522.1|WP_005069859.1|3051282_3052944_-|AidA-family-protein
MSGDSGGQSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYSGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSVRAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSTAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDK
>NZ_CP045522.1|WP_000406458.1|3049338_3051270_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTFTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLADVTVNGDLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPEPDPTPDPDPTPDPDPTPDPAPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGRYHYTAAGQLAQQEDTSTVLLSGGLFSGCWGTDGEWMLGAVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEHEDGVDRYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAVKLRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP045522.1|WP_000990752.1|3048488_3049211_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>NZ_CP045522.1|WP_001281242.1|3045714_3048342_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP045522.1|WP_000012288.1|3043877_3045566_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEERTAEKTPVRLRIVASARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWCREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGVAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGVAWQWLPITWQPL
>NZ_CP045522.1|WP_001215763.1|3043257_3043881_-|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSRLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGSGKNGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP045522.1|WP_161550615.1|3039740_3040909_-|IS3-family-transposase
MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATQRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
>NZ_CP045522.1|WP_005069839.1|3037465_3038188_-|hypothetical-protein
MTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTCEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP045522.1|WP_000332036.1|3058419_3059550_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_CP045522.1|WP_000135039.1|3059549_3059804_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_CP045522.1|WP_000301058.1|3059857_3060508_-|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSRVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP045522.1|WP_000768975.1|3060955_3062032_-|glycerophosphodiester-phosphodiesterase
MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP045522.1|WP_000948723.1|3062036_3063395_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_CP045522.1|WP_000857224.1|3063667_3065296_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIAHHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP045522.1|WP_025758937.1|3065285_3066545_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGSGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRATWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNKENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQITQRAGGQQ
>NZ_CP045522.1|WP_001000362.1|3066541_3067732_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP045522.1|WP_000140527.1|3067924_3068824_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFIFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRPMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDESDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDHDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLAATQLTDADIPNCY
>NZ_CP045522.1|WP_025758941.1|3068842_3069064_+|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLVGLQQGKLEGLQQGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH

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Crispr_ID: NZ_CP045522_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_5

3572945-3573028

Orphan

I-E

Consensus_repeat	Method
TTATCCCCGCTGACGCGGGGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045522_5

>merge|NZ_CP045522|5|3572945-3573028|CRISPRCasFinder
TTATCCCCGCTGACGCGGGGAACTCGAATAACTGACCAACGTCTGGCTCTCTAAATCCGGTTTATCCCCGCTGGCGCGGGGAAC

>NZ_CP045522|5|5|3572945-3573028|CRISPRCasFinder
TTATCCCCGCTGACGCGGGGAAC	TCGAATAACTGACCAACGTCTGGCTCTCTAAATCCGGT
TTATCCCCGCTGGCGCGGGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_025759009.1\|3565296_3566076_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP045522.1\|WP_000036723.1\|3576042_3577341_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP045522.1\|WP_025757798.1\|3583820_3586577_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP045522.1\|WP_005070649.1\|3564439_3565300_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP045522.1\|WP_119182075.1\|3570112_3571390_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP045522.1\|WP_119182076.1\|3562177_3563449_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP045522.1\|WP_001130276.1\|3563716_3564292_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP045522.1\|WP_000210881.1\|3577428_3579066_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP045522.1\|WP_001288222.1\|3574956_3575097_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045522.1\|WP_001071652.1\|3579293_3580085_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP045522.1\|WP_000098267.1\|3586808_3588149_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP045522.1\|WP_000046798.1\|3582462_3583764_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP045522.1\|WP_000109523.1\|3563439_3563700_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP045522.1\|WP_000147663.1\|3566053_3567463_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP045522.1\|WP_001268465.1\|3575110_3575983_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP045522.1\|WP_000226816.1\|3580180_3582415_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP045522.1\|WP_025759008.1\|3571416_3572895_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP045522.1\|WP_000211949.1\|3559619_3561419_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP045522.1\|WP_001199973.1\|3574146_3574818_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045522.1\|WP_000108294.1\|3561737_3562100_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_025759009.1\|3565296_3566076_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.85169e-63
NZ_CP045522.1\|WP_000036723.1\|3576042_3577341_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045522.1\|WP_025757798.1\|3583820_3586577_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP045522.1\|WP_005070649.1\|3564439_3565300_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.65851e-86
NZ_CP045522.1\|WP_119182075.1\|3570112_3571390_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.48026e-29
NZ_CP045522.1\|WP_119182076.1\|3562177_3563449_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	4.54263e-123
NZ_CP045522.1\|WP_001130276.1\|3563716_3564292_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	2.40189e-86
NZ_CP045522.1\|WP_000210881.1\|3577428_3579066_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045522.1\|WP_001071652.1\|3579293_3580085_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	7.13709e-159
NZ_CP045522.1\|WP_000098267.1\|3586808_3588149_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP045522.1\|WP_000046798.1\|3582462_3583764_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP045522.1\|WP_000109523.1\|3563439_3563700_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.70901e-40
NZ_CP045522.1\|WP_000147663.1\|3566053_3567463_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.12927e-50
NZ_CP045522.1\|WP_001268465.1\|3575110_3575983_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.25311e-95
NZ_CP045522.1\|WP_000226816.1\|3580180_3582415_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP045522.1\|WP_025759008.1\|3571416_3572895_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.35082e-107
NZ_CP045522.1\|WP_000211949.1\|3559619_3561419_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP045522.1\|WP_001199973.1\|3574146_3574818_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP045522.1\|WP_000108294.1\|3561737_3562100_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.01593e-59

>NZ_CP045522.1|WP_025759008.1|3571416_3572895_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVIYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMEKFNIPRHILFDVQMPGTVLGHITPQGALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP045522.1|WP_119182075.1|3570112_3571390_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASHGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP045522.1|WP_000147663.1|3566053_3567463_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLCQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP045522.1|WP_025759009.1|3565296_3566076_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRCGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP045522.1|WP_005070649.1|3564439_3565300_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDAMVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVSRDPLAEARRVLVVGQGGEADNQEIVMLAEKLGTEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFMVAINHDASAAVFSQADIDVVDDWKVVLEALVTNIHAEYQ
>NZ_CP045522.1|WP_001130276.1|3563716_3564292_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEVFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP045522.1|WP_000109523.1|3563439_3563700_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQMVQRLINACPVGLFSLTQEGGLRIDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP045522.1|WP_119182076.1|3562177_3563449_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPSWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP045522.1|WP_000108294.1|3561737_3562100_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP045522.1|WP_000211949.1|3559619_3561419_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPVALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDSDVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTLIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANLETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP045522.1|WP_001199973.1|3574146_3574818_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP045522.1|WP_001288222.1|3574956_3575097_+|hypothetical-protein
MSEENKENGFNHVKIFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP045522.1|WP_001268465.1|3575110_3575983_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTGLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVSTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYPANPSESESTSSTDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIHLLDLFLFSDKTFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP045522.1|WP_000036723.1|3576042_3577341_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045522.1|WP_000210881.1|3577428_3579066_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVVGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP045522.1|WP_001071652.1|3579293_3580085_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKVNEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP045522.1|WP_000226816.1|3580180_3582415_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLYGS
>NZ_CP045522.1|WP_000046798.1|3582462_3583764_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP045522.1|WP_025757798.1|3583820_3586577_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISCVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVITLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP045522.1|WP_000098267.1|3586808_3588149_-|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDASGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Crispr_ID: NZ_CP045522_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045522_6

3915535-3915636

Orphan

Consensus_repeat	Method
TACAAAACACAACAACATCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045522_6

>merge|NZ_CP045522|6|3915535-3915636|CRISPRCasFinder
TACAAAACACAACAACATCAACAAATTAAACACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCATCAGGTACAAAACACAACAACATCAACAA

>NZ_CP045522|6|6|3915535-3915636|CRISPRCasFinder
TACAAAACACAACAACATCAACAA	ATTAAACACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCATCAGG
TACAAAACACAACAACATCAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045522.1\|WP_001314179.1\|3913029_3913398_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP045522.1\|WP_000031415.1\|3910101_3910407_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP045522.1\|WP_000531201.1\|3911750_3912737_+\|glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
NZ_CP045522.1\|WP_152030373.1\|3917025_3918303_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273283
NZ_CP045522.1\|WP_001166768.1\|3909179_3909563_+\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728
NZ_CP045522.1\|WP_000096086.1\|3910803_3911103_+\|YqjK-like-family-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP045522.1\|WP_000719978.1\|3920013_3920403_-\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP045522.1\|WP_040235176.1\|3913604_3914501_-\|DNA-binding-transcriptional-regulator-YhaJ	unknown	unknown	gnl\|CDD\|176122
NZ_CP045522.1\|WP_025757597.1\|3923977_3925309_-\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP045522.1\|WP_000145836.1\|3927545_3927890_+\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP045522.1\|WP_000104211.1\|3926418_3927357_-\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP045522.1\|WP_000633582.1\|3914605_3915307_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP045522.1\|WP_128861682.1\|3911198_3911681_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP045522.1\|WP_025757598.1\|3922743_3923952_-\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP045522.1\|WP_032326884.1\|3918577_3919942_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP045522.1\|WP_000548347.1\|3925330_3926320_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP045522.1\|WP_000675742.1\|3928145_3928685_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045522.1\|WP_000785722.1\|3910409_3910814_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP045522.1\|WP_000460494.1\|3915705_3916998_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP045522.1\|WP_005115878.1\|3915329_3915494_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP045522.1\|WP_001314179.1\|3913029_3913398_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.06295e-42
NZ_CP045522.1\|WP_000031415.1\|3910101_3910407_+\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP045522.1\|WP_000531201.1\|3911750_3912737_+\|glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP045522.1\|WP_152030373.1\|3917025_3918303_-\|hypothetical-protein	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	8.07898e-150
NZ_CP045522.1\|WP_001166768.1\|3909179_3909563_+\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	1.13391e-71
NZ_CP045522.1\|WP_000096086.1\|3910803_3911103_+\|YqjK-like-family-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP045522.1\|WP_000719978.1\|3920013_3920403_-\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	3.78516e-82
NZ_CP045522.1\|WP_040235176.1\|3913604_3914501_-\|DNA-binding-transcriptional-regulator-YhaJ	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.24846e-51
NZ_CP045522.1\|WP_000145836.1\|3927545_3927890_+\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	1.4676e-66
NZ_CP045522.1\|WP_000104211.1\|3926418_3927357_-\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP045522.1\|WP_000785722.1\|3910409_3910814_+\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP045522.1\|WP_128861682.1\|3911198_3911681_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.82695e-26
NZ_CP045522.1\|WP_025757598.1\|3922743_3923952_-\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP045522.1\|WP_032326884.1\|3918577_3919942_-\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP045522.1\|WP_000548347.1\|3925330_3926320_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP045522.1\|WP_000633582.1\|3914605_3915307_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.70011e-68
NZ_CP045522.1\|WP_000460494.1\|3915705_3916998_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP045522.1\|WP_025757597.1\|3923977_3925309_-\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0

>NZ_CP045522.1|WP_005115878.1|3915329_3915494_+|hypothetical-protein
MSKKSTKKRQLAKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP045522.1|WP_000633582.1|3914605_3915307_+|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDTCPQRENPLIQKLALNMDKQQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP045522.1|WP_040235176.1|3913604_3914501_-|DNA-binding-transcriptional-regulator-YhaJ
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYIMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGQLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFAGK
>NZ_CP045522.1|WP_001314179.1|3913029_3913398_+|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEQE
>NZ_CP045522.1|WP_000531201.1|3911750_3912737_+|glutathionyl-hydroquinone-reductase-YqjG
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP045522.1|WP_128861682.1|3911198_3911681_+|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVAHILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFSFLTRTTTLFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP045522.1|WP_000096086.1|3910803_3911103_+|YqjK-like-family-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP045522.1|WP_000785722.1|3910409_3910814_+|phage-holin-family-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP045522.1|WP_000031415.1|3910101_3910407_+|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR
>NZ_CP045522.1|WP_001166768.1|3909179_3909563_+|EnvZ/OmpR-regulon-moderator-MzrA
MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG
>NZ_CP045522.1|WP_000460494.1|3915705_3916998_-|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGITVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGAKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP045522.1|WP_152030373.1|3917025_3918303_-|hypothetical-protein
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTDMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYSVSFTLAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSLFLAFS
>NZ_CP045522.1|WP_032326884.1|3918577_3919942_-|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCD
>NZ_CP045522.1|WP_000719978.1|3920013_3920403_-|enamine/imine-deaminase
MKKIIETQRALGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP045522.1|WP_025757598.1|3922743_3923952_-|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLALHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWIASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSFGERIVSSENAHVICVVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP045522.1|WP_025757597.1|3923977_3925309_-|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKVQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTLSMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP045522.1|WP_000548347.1|3925330_3926320_-|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP045522.1|WP_000104211.1|3926418_3927357_-|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP045522.1|WP_000145836.1|3927545_3927890_+|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP045522.1|WP_000675742.1|3928145_3928685_+|hypothetical-protein
MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVLSAITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTPPRHFNKTCITSDCWQILFFSPDHFNNDFY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4158-4217	8	0.867
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4157-4216	8	0.867
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115798-115857	8	0.867
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4157-4216	8	0.867
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4157-4216	8	0.867
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229131	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229232	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229285-229333	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239625	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239726	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239779-239827	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230537	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230638	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230691-230739	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211507	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211608	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211661-211709	9	0.816
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229434	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239928	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230840	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211810	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7490	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84314	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386556	10	0.796
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14244	10	0.796
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7435-7494	11	0.817
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84259-84318	11	0.817
NZ_CP045522_2	2.1\|793130\|58\|NZ_CP045522\|CRISPRCasFinder	793130-793187	58	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101181-101238	11	0.81
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194051	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194096-194144	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194282-194330	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204545	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204590-204638	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204776-204824	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195379	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195424-195472	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195610-195658	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176334	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176379-176427	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176565-176613	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27282-27330	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27381-27429	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51882	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19437	11	0.776
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211778	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211978	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194189-194237	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222272	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222472	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204683-204731	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213106	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213306	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195517-195565	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194061	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194261	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176472-176520	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11559	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397136	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404181	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28042	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31347	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33059-33107	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141016-141064	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MF374379	Escherichia phage DN1, complete genome	31158-31206	12	0.755
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14153	13	0.735
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6907	13	0.735
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NC_049343	Escherichia phage 500465-2, complete genome	31797-31845	13	0.735
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-142	13	0.735
NZ_CP045522_1	1.1\|702892\|60\|NZ_CP045522\|CRISPRCasFinder	702892-702951	60	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40377-40436	14	0.767
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82890	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313640	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63937	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110186-110234	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	198909-198957	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40353	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	91418-91466	14	0.714
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102592	15	0.694
NZ_CP045522_4	4.1\|3058276\|49\|NZ_CP045522\|CRISPRCasFinder	3058276-3058324	49	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56079	15	0.694

1. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

2. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

3. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

4. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

5. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.867

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgca	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt-gtgca	Protospacer
 ..******* **** ***** ******************************** *.***

6. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

7. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

8. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

9. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

10. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

11. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

12. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

13. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

14. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

15. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

16. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

17. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

18. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

19. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

20. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

21. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

22. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

23. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

24. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga--	CRISPR spacer
cacaagtgccggatgcggcgtaaacgccttatccggcctacg--ccagact	Protospacer
. *..***********.****.********************  .*.**

25. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gctggttgccggatgcggcgtgaacgccttatccggcctacattcggca	Protospacer
 *.** **********.************************. .. * *

26. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.817

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgcac	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt-gtgcac	Protospacer
.. .**..*. ***************************************.** *.****

27. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.817

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttggcgcac	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt-gtgcac	Protospacer
.. .**..*. ***************************************.** *.****

28. spacer 2.1|793130|58|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.81

cgtaggcctgataagacgcgccagcgtcgcatcaggcgttgaatgccggatgcgcttt	CRISPR spacer
acaaggcctgataagacgcgccagcgtcgcatcaggcgctgaatgccggattgttacc	Protospacer
   ***********************************.************   . ..

29. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

30. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

31. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

32. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

33. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

34. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

35. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

36. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

37. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

38. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

39. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

40. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

41. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagc	Protospacer
. *.. .*********.************************** * .*

42. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagt	Protospacer
. *.. .*********.************************** * .*

43. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agctggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgc	Protospacer
  * ************.****.*******************.. *  *

44. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggtgtgaacgccttatccggcctacggatggcc	Protospacer
* .  .**********.*.************************ * *

45. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

46. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

47. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

48. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

49. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

50. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

51. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

52. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

53. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

54. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

55. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

56. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

57. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
aatttttgccggatgcggcgtgaacgccttatccggcctacaacgggca	Protospacer
  .   **********.************************..*  * *

58. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga---	CRISPR spacer
cacaattgccggatgcggcgtaaacgccttatccggcctaca---tggataa	Protospacer
. *.. **********.****.*******************.   .***

59. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttttcttgccggatgcggcgtaaacgccttatccggcctacaggacgtg	Protospacer
*..   **********.****.*******************.*  ** .

60. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ctcaaatgccggatgcggcgtgaacgccttatccggcctacgcacacta	Protospacer
..*...**********.*************************  .   *

61. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agcaaatgccggatgcggcgtaaacgccttatccggcctacatttggca	Protospacer
  *...**********.****.*******************. .* * *

62. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

63. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

64. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
* .  .**********.************************.. .** .

65. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gttgattgccggatgcggcgtaaacgccttatccggcctacattcggca	Protospacer
 ..*. **********.****.*******************. .. * *

66. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttgttttgccggatgcggcgtgaacgccttatccggcctacaaaaccat	Protospacer
*.    **********.************************..  * .

67. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtgtttgccggatgcggcgtgaacgccttatccgacctacgtgtgacg	Protospacer
  .*  **********.******************.******  * . .

68. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttatgttgccggatgcggcgtaaacgccttatccggcctacaaaagcaa	Protospacer
*.  * **********.****.*******************..    .*

69. spacer 1.1|702892|60|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.767

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagttgg-cgca	CRISPR spacer
cactcgcaccaaaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgta	Protospacer
 ..*.*..**.***********************.***************.  .* **.*

70. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gtaaaatgccggatgcggcgtgaacgccttatccggcctacaaaccaag	Protospacer
 . ...**********.************************.. .*...

71. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acaaaatgccggatgcggcgtaaacgccttatccggcctacaaaatcgt	Protospacer
 * ...**********.****.*******************..  . *

72. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

73. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

74. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

75. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtaaacgccttatccggcctacaaaaagcg	Protospacer
* .  .**********.****.*******************..   * .

76. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

77. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtcaatgccggatgcggcgtgaacgccttatccggcctacaaaagcat	Protospacer
  . ..**********.************************..    .

78. spacer 4.1|3058276|49|NZ_CP045522|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtaaacgccttatccggcctacaaaaaacg	Protospacer
. * . **********.****.*******************..   . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

932033 : 1011263

Shigella_phage(33.33%)

plate,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161550544.1\|932033_933332_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|933380_933641_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|933627_933828_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|933993_934539_+	YaeQ family protein	NA	NA	NA	NA
WP_000635531.1\|934535_934958_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239155.1\|934971_935682_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_025759217.1\|935836_936661_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260712.1\|936713_938432_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094029.1\|938542_939250_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202325.1\|939246_939651_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|939768_940584_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|940623_941277_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593997.1\|941269_942301_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140187.1\|942488_943064_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_152030441.1\|948821_949625_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.1e-38	36.2
WP_001230983.1\|952198_952999_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211684.1\|953076_953847_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|953894_955253_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052755.1\|955324_956080_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_025759002.1\|956113_956836_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|956832_957300_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001366128.1\|957364_958096_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_000402248.1\|958435_959482_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_075288131.1\|959492_960368_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001276640.1\|962383_962878_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000183809.1\|962874_963705_-	hypothetical protein	NA	NA	NA	NA
WP_000950657.1\|963691_964069_-	type VI secretion system-associated protein TagK	NA	NA	NA	NA
WP_000804009.1\|964305_964605_-	FHA domain-containing protein	NA	NA	NA	NA
WP_173020723.1\|964702_965915_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.7e-169	99.3
WP_025757874.1\|967313_967700_+	hypothetical protein	NA	NA	NA	NA
WP_005053237.1\|970426_970834_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_128567422.1\|974263_974467_+	hypothetical protein	NA	NA	NA	NA
WP_152061091.1\|975305_975581_+	hypothetical protein	NA	NA	NA	NA
WP_001139559.1\|975988_976759_-	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000532697.1\|976912_977386_+	C-lysozyme inhibitor	NA	NA	NA	NA
WP_161550546.1\|977428_979873_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000284050.1\|980111_980690_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000333379.1\|980895_981663_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_001225676.1\|981633_982374_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000006251.1\|983454_983952_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_000952758.1\|984168_985908_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000207560.1\|985852_986638_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226172.1\|986708_987764_+	DNA polymerase IV	NA	NA	NA	NA
WP_000554759.1\|987815_988109_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001263492.1\|988111_988531_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_001059862.1\|989295_989748_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_025759252.1\|991770_993228_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291990.1\|993489_993948_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189558.1\|994039_995284_+	esterase FrsA	NA	NA	NA	NA
WP_000174677.1\|995341_995743_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749862.1\|995781_996837_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	4.5e-118	60.9
WP_001285280.1\|997124_998228_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.2e-62	40.4
WP_000893267.1\|998239_999493_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
WP_000747032.1\|1000736_1001905_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_000287051.1\|1002954_1003215_-	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	1.8e-36	96.5
WP_024261189.1\|1004425_1005049_+	hypothetical protein	A0A088CQ58	Enterobacteria_phage	2.3e-77	74.9
WP_000688544.1\|1005115_1006381_-	hypothetical protein	Q05056	Shigella_phage	1.9e-235	100.0
WP_000703648.1\|1006393_1007311_-	glycosyltransferase family 2 protein	M1FQW5	Enterobacteria_phage	3.5e-167	96.7
WP_000915539.1\|1007307_1007670_-	bactoprenol glucosyl transferase	U5P0S6	Shigella_phage	2.1e-54	90.0
WP_000747032.1\|1009073_1010242_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_001524120.1\|1010345_1011263_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	4.4e-170	99.7

DBSCAN-SWA_2

1179148 : 1250852

Shigella_phage(43.75%)

transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001158007.1\|1179148_1180243_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_000460142.1\|1180311_1181238_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776388.1\|1181467_1181950_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141275.1\|1182027_1182843_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_001096884.1\|1182932_1184714_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	6.0e-38	26.8
WP_024260233.1\|1186443_1187676_-	allantoate deiminase	NA	NA	NA	NA
WP_000855389.1\|1188322_1189216_+	carbamate kinase	NA	NA	NA	NA
WP_000815547.1\|1189352_1190420_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_005052935.1\|1190416_1190926_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_000212252.1\|1191043_1191766_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256011.1\|1191768_1192263_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912345.1\|1192436_1193822_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143547.1\|1193857_1194379_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|1194486_1194699_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729155.1\|1194700_1195567_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|1196047_1196590_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988387.1\|1196790_1197483_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_025758772.1\|1199116_1199878_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
WP_001224555.1\|1200060_1200951_-	DUF4434 family protein	NA	NA	NA	NA
WP_119182149.1\|1200951_1203924_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_040236460.1\|1203910_1206148_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_025757980.1\|1207074_1208517_-	Cu(+)/Ag(+) sensor histidine kinase CusS	NA	NA	NA	NA
WP_000770953.1\|1208506_1209190_-	copper response regulator transcription factor CusR	W8CYM9	Bacillus_phage	1.0e-30	35.1
WP_171763885.1\|1210543_1211772_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.9e-176	98.7
WP_025758469.1\|1215750_1217127_+	phenylalanine transporter	NA	NA	NA	NA
WP_025758468.1\|1217194_1218442_-	mechanosensitive ion channel YbdG	NA	NA	NA	NA
WP_025758467.1\|1218549_1219203_-	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
WP_000360957.1\|1219296_1219665_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_000682518.1\|1219729_1219978_-	DUF1158 domain-containing protein	NA	NA	NA	NA
WP_025758466.1\|1220043_1221162_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_173020725.1\|1222072_1223229_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.5e-66	43.7
WP_094110470.1\|1223587_1224756_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.9e-184	99.7
WP_000002447.1\|1227519_1228422_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005073221.1\|1228631_1229378_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA
WP_000052796.1\|1229749_1230313_+	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA
WP_001313644.1\|1230557_1232123_+	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	7.6e-45	34.6
WP_000276167.1\|1232243_1232672_-	universal stress protein UspG	A0A1W6JNV4	Morganella_phage	1.9e-19	39.2
WP_000089727.1\|1234360_1234771_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_005066726.1\|1234999_1235806_-	ribonuclease I	NA	NA	NA	NA
WP_000050319.1\|1235919_1237383_-	citrate/succinate antiporter CitT	NA	NA	NA	NA
WP_000062460.1\|1237433_1238312_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA
WP_000550398.1\|1238286_1238838_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_005066735.1\|1238841_1240374_-	citrate lyase subunit alpha	NA	NA	NA	NA
WP_000622357.1\|1240384_1241293_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA
WP_000700703.1\|1241289_1241586_-	citrate lyase acyl carrier protein	NA	NA	NA	NA
WP_000497905.1\|1241600_1242659_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA
WP_000126490.1\|1244665_1245049_+	response regulator	NA	NA	NA	NA
WP_000514021.1\|1245124_1245820_-	hypothetical protein	A0A0C4UQZ7	Shigella_phage	5.2e-131	98.3
WP_001311352.1\|1245770_1245959_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	3.7e-31	98.4
WP_071993817.1\|1246052_1246250_-	recombinase family protein	A0A0C4UR34	Shigella_phage	2.0e-24	100.0
WP_005066757.1\|1246343_1247099_+	hypothetical protein	A0A0C4UQV0	Shigella_phage	3.7e-130	91.0
WP_000972106.1\|1248106_1248634_+\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	7.1e-88	92.6
WP_000972124.1\|1248662_1249196_-\|tail	tail fiber assembly protein	A0A0C4UQZ5	Shigella_phage	3.5e-95	97.7
WP_173020726.1\|1249695_1250852_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-66	44.4

DBSCAN-SWA_3

1386661 : 1443414

Enterobacteria_phage(37.5%)

integrase,transposase,tail,terminase

attL 1400575:1400634|attR 1443409:1444719

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075328310.1\|1386661_1387105_-\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	8.4e-34	48.7
WP_001277359.1\|1388840_1389137_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-41	83.5
WP_005066385.1\|1389114_1390476_-	hypothetical protein	A0A0U2I1R6	Escherichia_phage	2.7e-171	83.1
WP_171763907.1\|1390983_1392196_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.3e-168	99.0
WP_025757756.1\|1394659_1394938_+	hypothetical protein	Q9ZWY1	Enterobacteria_phage	4.6e-46	94.5
WP_000814621.1\|1394934_1395345_+	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	8.0e-71	98.5
WP_001254220.1\|1395341_1395518_+	NinE family protein	K7PHE6	Enterobacteria_phage	2.7e-28	100.0
WP_000147081.1\|1395559_1395868_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	3.5e-47	98.0
WP_032156969.1\|1395857_1396187_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.6e-42	94.3
WP_119176018.1\|1396211_1397069_+	Rha family phage regulatory protein	S5MQL6	Escherichia_phage	6.5e-115	77.0
WP_000618004.1\|1397065_1397299_+	hypothetical protein	A0A1C9II64	Salmonella_phage	5.1e-14	51.4
WP_000988187.1\|1398203_1399082_+	ATP-binding protein	Q8W641	Enterobacteria_phage	7.8e-140	96.0
1400575:1400634	attL	NA	NA	NA	NA
WP_171763904.1\|1400628_1401841_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-168	99.3
WP_161550562.1\|1403632_1404307_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	9.9e-10	30.1
WP_011069285.1\|1404645_1405158_-	VTT domain-containing protein	NA	NA	NA	NA
WP_152030432.1\|1405352_1406117_+	hypothetical protein	G8C7P2	Escherichia_phage	5.9e-11	53.8
WP_005073316.1\|1406067_1406751_+\|terminase	PBSX family phage terminase large subunit	K4NXU1	Acinetobacter_phage	3.1e-96	73.4
WP_088895425.1\|1406826_1408054_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000586905.1\|1408091_1408217_+	DUF2737 family protein	A0A1V0E5L8	Salmonella_phage	8.4e-16	100.0
WP_000034209.1\|1408213_1408438_+	ead/Ea22-like family protein	A0A1I9LJV0	Stx_converting_phage	2.8e-30	93.8
WP_000747032.1\|1408412_1409581_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_025758499.1\|1409763_1410834_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.1e-201	99.7
WP_001091541.1\|1410968_1412252_+	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA
WP_000593939.1\|1412392_1414573_-	hydratase	NA	NA	NA	NA
WP_025759641.1\|1417089_1418142_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_119182165.1\|1420096_1421092_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_161550563.1\|1423389_1424007_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	4.5e-78	75.9
WP_094099498.1\|1424072_1425228_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.0e-67	44.4
WP_000447263.1\|1425979_1426309_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	8.9e-57	96.3
WP_025758205.1\|1426308_1427007_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.9e-120	89.2
WP_000194737.1\|1427011_1427755_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-145	94.7
WP_152030413.1\|1431901_1432501_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.4e-103	92.5
WP_161550566.1\|1433926_1434550_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	7.8e-78	75.9
WP_000805588.1\|1434729_1436493_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_047563448.1\|1438477_1439884_+	phage DNA ejection protein	I6RSG0	Salmonella_phage	2.4e-130	56.3
WP_005067134.1\|1439883_1441725_+	hypothetical protein	A0A192Y934	Salmonella_phage	4.5e-246	74.2
WP_047563444.1\|1441856_1442198_+\|tail	tail protein	A0A088CQ58	Enterobacteria_phage	5.4e-49	96.0
WP_171763904.1\|1442200_1443414_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.9e-168	99.3
1443409:1444719	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1640505 : 1708196

Stx2-converting_phage(38.46%)

protease,transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000117881.1\|1640505_1641906_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1
WP_001297200.1\|1642074_1643277_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000193850.1\|1643542_1646155_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	9.1e-19	22.8
WP_119182121.1\|1646361_1647129_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.7e-29	37.6
WP_000055960.1\|1647784_1648930_-	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_025758719.1\|1648926_1649886_-	aliphatic sulfonate ABC transporter substrate-binding protein SsuA	NA	NA	NA	NA
WP_001263928.1\|1649878_1650454_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_171803710.1\|1651282_1651753_-	fimbrial protein	NA	NA	NA	NA
WP_025758228.1\|1655825_1656896_+	fimbrial protein	NA	NA	NA	NA
WP_000730630.1\|1656907_1657450_+	fimbrial protein	NA	NA	NA	NA
WP_000919489.1\|1657457_1657973_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_001111451.1\|1657938_1658676_+	fimbrial chaperone	NA	NA	NA	NA
WP_001370288.1\|1658786_1659797_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_004991542.1\|1659970_1660513_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224274.1\|1660509_1661619_-	6-N-hydroxylaminopurine resistance protein YcbX	NA	NA	NA	NA
WP_025758232.1\|1661862_1663971_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_025758233.1\|1666019_1667273_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000445541.1\|1667277_1668918_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759120.1\|1668914_1669478_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000828648.1\|1669733_1669901_+	ribosome modulation factor	NA	NA	NA	NA
WP_005074171.1\|1669970_1670489_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156487.1\|1670557_1672318_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877161.1\|1672502_1672955_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_005047463.1\|1673030_1674077_-	porin OmpA	NA	NA	NA	NA
WP_000288715.1\|1674432_1674942_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_000839153.1\|1675160_1675790_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA
WP_000875052.1\|1675752_1677915_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261235.1\|1677924_1678371_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420536.1\|1678493_1680548_+	DNA helicase IV	A7KV33	Bacillus_phage	1.0e-20	27.9
WP_000424181.1\|1680579_1681038_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847791.1\|1681133_1681796_-	DUF2057 family protein	NA	NA	NA	NA
WP_000665217.1\|1681968_1682382_+	CoA-binding protein	NA	NA	NA	NA
WP_001295356.1\|1682426_1682744_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000116288.1\|1682801_1683992_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000048219.1\|1684086_1684365_+	acylphosphatase	NA	NA	NA	NA
WP_025758239.1\|1684361_1684691_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000375136.1\|1684781_1685441_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
WP_025758242.1\|1686160_1687279_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_001186413.1\|1689069_1689777_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003657.1\|1689773_1690361_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_000063973.1\|1690357_1690756_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
WP_000004911.1\|1690752_1691610_+	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_000263563.1\|1691743_1693288_+	cytochrome bd-II oxidase subunit 1	NA	NA	NA	NA
WP_000460803.1\|1693299_1694436_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_000270304.1\|1694447_1694540_+	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA
WP_005061766.1\|1694619_1695918_+	bifunctional acid phosphatase/4-phytase	NA	NA	NA	NA
WP_001088287.1\|1696346_1697021_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
WP_161550575.1\|1697017_1697365_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.6e-43	72.9
WP_161550577.1\|1699079_1700247_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.6e-183	99.7
WP_047563296.1\|1700480_1700978_-	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	3.2e-90	97.0
WP_005067459.1\|1700977_1701193_-\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	9.4e-31	90.1
WP_000111770.1\|1703385_1703577_-	protein ninH	A0A088CC23	Shigella_phage	4.3e-19	73.3
WP_001088287.1\|1703939_1704614_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
WP_000631709.1\|1704610_1704958_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.1e-44	73.8
WP_161550639.1\|1707008_1708196_-\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1721672 : 1781874

Stx2-converting_phage(23.08%)

integrase,transposase

attL 1774358:1774417|attR 1784607:1785374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161550640.1\|1721672_1722860_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000124119.1\|1722859_1723225_-	hypothetical protein	NA	NA	NA	NA
WP_000611845.1\|1723422_1724409_+	hypothetical protein	NA	NA	NA	NA
WP_000279879.1\|1724775_1725993_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.7e-44	34.4
WP_005067490.1\|1726162_1727692_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000070931.1\|1727663_1727951_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001258873.1\|1728051_1729887_+	hypothetical protein	NA	NA	NA	NA
WP_000282110.1\|1731261_1731825_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_042196155.1\|1731931_1732138_+	helicase	NA	NA	NA	NA
WP_001189109.1\|1733875_1735384_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6
WP_001415943.1\|1737280_1737436_+	hypothetical protein	NA	NA	NA	NA
WP_053884943.1\|1737540_1738611_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203522.1\|1738607_1739513_-	chemotaxis protein	NA	NA	NA	NA
WP_000544701.1\|1739509_1741894_-	dynamin family protein	NA	NA	NA	NA
WP_005061994.1\|1742111_1742984_-	GTPase family protein	NA	NA	NA	NA
WP_000250228.1\|1743068_1743986_-	hypothetical protein	NA	NA	NA	NA
WP_000813456.1\|1745185_1745788_-	hypothetical protein	NA	NA	NA	NA
WP_000235221.1\|1745882_1746089_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000840364.1\|1746229_1746496_+	hypothetical protein	NA	NA	NA	NA
WP_001344112.1\|1746796_1746973_+	hemolysin activation protein	NA	NA	NA	NA
WP_088895425.1\|1747439_1748667_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000221544.1\|1749053_1749623_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000270978.1\|1749882_1750284_+	hypothetical protein	NA	NA	NA	NA
WP_001221615.1\|1750271_1750706_+	hypothetical protein	NA	NA	NA	NA
WP_001282144.1\|1751051_1751441_+	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	3.9e-67	98.4
WP_000612632.1\|1751437_1751785_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.4e-60	98.3
WP_000998091.1\|1751834_1753220_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-258	89.1
WP_000823243.1\|1753458_1754817_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000555341.1\|1755549_1755807_-	hypothetical protein	NA	NA	NA	NA
WP_001283626.1\|1756724_1757246_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_001068910.1\|1757242_1758196_+	fec operon regulator FecR	NA	NA	NA	NA
WP_000188248.1\|1758282_1760607_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_000879153.1\|1760651_1761554_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000125175.1\|1761550_1762549_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000684856.1\|1762545_1763502_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000175457.1\|1763502_1764270_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000177057.1\|1764827_1765085_-	hypothetical protein	NA	NA	NA	NA
WP_160371899.1\|1766549_1767392_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000428546.1\|1770445_1771039_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|1771151_1772357_-	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_000088605.1\|1772438_1773062_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|1773039_1773726_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|1773733_1774120_-	hypothetical protein	NA	NA	NA	NA
WP_049802299.1\|1774112_1774376_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
1774358:1774417	attL	NA	NA	NA	NA
WP_000412211.1\|1775348_1776008_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|1776208_1776586_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|1776652_1779619_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|1779621_1780182_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|1780307_1780658_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|1780860_1781874_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
1784607:1785374	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1892294 : 1905423

uncultured_Caudovirales_phage(91.67%)

head,terminase,capsid,integrase,tail,portal,protease

attL 1882573:1882587|attR 1901254:1901268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1882573:1882587	attL	NA	NA	NA	NA
WP_000085257.1\|1892294_1893524_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.4e-132	55.9
WP_000953271.1\|1893898_1894087_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_005067819.1\|1894144_1894891_+	hypothetical protein	A0A2H4JGN8	uncultured_Caudovirales_phage	1.4e-12	51.0
WP_024260618.1\|1894899_1895100_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_005005155.1\|1895089_1895311_+	hypothetical protein	NA	NA	NA	NA
WP_001204964.1\|1895525_1895759_+	hypothetical protein	NA	NA	NA	NA
WP_000770157.1\|1895764_1896064_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761799.1\|1896060_1897809_+	DNA primase	Q7M2A8	Enterobacteria_phage	7.3e-89	39.3
WP_000557476.1\|1898088_1898367_+	hypothetical protein	NA	NA	NA	NA
WP_001294165.1\|1898363_1898669_+	hypothetical protein	NA	NA	NA	NA
WP_000126701.1\|1898678_1898840_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_025758364.1\|1899142_1900300_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	6.2e-137	64.6
WP_000504059.1\|1900339_1900912_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.3e-60	63.0
WP_000267614.1\|1900913_1902125_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.8e-187	79.0
1901254:1901268	attR	NA	NA	NA	NA
WP_001020662.1\|1902121_1902460_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-31	52.7
WP_000134108.1\|1902456_1902753_+\|head,tail	phage head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	4.4e-31	63.3
WP_001145905.1\|1902752_1903193_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
WP_000174068.1\|1903176_1903359_+	hypothetical protein	NA	NA	NA	NA
WP_025758361.1\|1903481_1903838_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	2.1e-51	80.5
WP_025758359.1\|1903821_1905423_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	1.2e-268	82.3

DBSCAN-SWA_7

2150682 : 2313436

121

Escherichia_phage(29.79%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173020731.1\|2150682_2151838_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_025760003.1\|2156195_2157836_+	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_025760001.1\|2157873_2158797_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000375966.1\|2160580_2162236_+	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_001296778.1\|2162375_2162600_+	YdcH family protein	NA	NA	NA	NA
WP_000140884.1\|2162662_2163199_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001234070.1\|2163193_2164174_-	LbetaH domain-containing protein	NA	NA	NA	NA
WP_005047890.1\|2164297_2165290_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_000586723.1\|2165286_2165880_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001261020.1\|2166182_2166851_+	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000555458.1\|2170493_2171288_+	ABC transporter permease	NA	NA	NA	NA
WP_000867989.1\|2172944_2173754_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	5.9e-17	41.0
WP_001303494.1\|2174155_2174251_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_000061178.1\|2174445_2174619_+	orphan toxin OrtT	NA	NA	NA	NA
WP_001076539.1\|2174937_2175387_-	DMT family transporter	NA	NA	NA	NA
WP_000027563.1\|2175383_2175902_-	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	NA	NA	NA	NA
WP_162943461.1\|2176060_2177288_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.9e-176	99.0
WP_025758818.1\|2177418_2178456_+	NADPH-dependent curcumin/dihydrocurcumin reductase	NA	NA	NA	NA
WP_005068010.1\|2178653_2179319_+	colanic acid/biofilm transcriptional regulator McbR	NA	NA	NA	NA
WP_000631709.1\|2180501_2180849_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.1e-44	73.8
WP_005065617.1\|2180868_2182470_+\|transposase	IS66-like element ISSfl3 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-147	61.2
WP_000124119.1\|2183371_2183737_-	hypothetical protein	NA	NA	NA	NA
WP_119182145.1\|2190127_2191459_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_064734200.1\|2191568_2191970_-	hypothetical protein	NA	NA	NA	NA
WP_000768386.1\|2192994_2194095_-	porin OmpC	Q1MVN1	Enterobacteria_phage	3.5e-137	64.8
WP_000198219.1\|2194353_2195235_-	aromatic amino acid efflux DMT transporter YddG	NA	NA	NA	NA
WP_094099508.1\|2195466_2198514_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_001240582.1\|2198526_2199411_+	formate dehydrogenase N subunit beta	NA	NA	NA	NA
WP_000045648.1\|2199403_2200057_+	formate dehydrogenase-N subunit gamma	NA	NA	NA	NA
WP_005050353.1\|2200106_2200391_-	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	2.2e-19	50.0
WP_000845078.1\|2200536_2201547_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	7.3e-25	25.3
WP_000433464.1\|2201680_2203378_-	malate dehydrogenase	NA	NA	NA	NA
WP_000152305.1\|2204434_2204866_+	peroxiredoxin OsmC	NA	NA	NA	NA
WP_000193536.1\|2205840_2206827_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-18	32.1
WP_000979624.1\|2206823_2207720_-	D,D-dipeptide ABC transporter permease	NA	NA	NA	NA
WP_005062918.1\|2208865_2210011_-	diguanylate cyclase DosC	A0A127AWB9	Bacillus_phage	1.9e-05	41.9
WP_000350395.1\|2210375_2211695_-	glycoside hydrolase family 10 protein	NA	NA	NA	NA
WP_000246019.1\|2211825_2213361_-	acid resistance gamma-aminobutyrate antiporter GadC	NA	NA	NA	NA
WP_000358930.1\|2213516_2214917_-	glutamate decarboxylase	NA	NA	NA	NA
WP_001245022.1\|2215278_2218062_-	insulinase family protein	A0A167R9K4	Powai_lake_megavirus	1.7e-18	23.5
WP_000832421.1\|2218118_2220491_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_120795387.1\|2222416_2222539_+	protein YneP	NA	NA	NA	NA
WP_000060475.1\|2225796_2226558_-	acid stress response transcriptional regulator YdeO	NA	NA	NA	NA
WP_000543382.1\|2226631_2226829_-	two-component system connector SafA	NA	NA	NA	NA
WP_000726665.1\|2227076_2229356_-	acid resistance putative oxidoreductase YdeP	NA	NA	NA	NA
WP_173020720.1\|2230494_2230770_+\|transposase	IS1 family transposase	Q71TE9	Escherichia_phage	4.2e-44	92.3
WP_173020721.1\|2230688_2231012_+	hypothetical protein	U5P0U6	Shigella_phage	1.5e-43	87.1
WP_000747032.1\|2233442_2234610_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_173020732.1\|2234647_2235803_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-66	44.7
WP_071818640.1\|2235800_2236106_-	hypothetical protein	NA	NA	NA	NA
WP_000534858.1\|2236130_2236370_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_000323025.1\|2236369_2236657_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000813254.1\|2236728_2236884_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_024258459.1\|2237418_2237697_+	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	48.4
WP_025759563.1\|2237698_2238748_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.6e-107	53.7
WP_000904111.1\|2238760_2239117_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_000762884.1\|2239131_2239953_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.6e-78	59.0
WP_005068100.1\|2240849_2240981_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.8e-05	96.4
WP_000871291.1\|2241261_2241597_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_000874243.1\|2241856_2242045_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_001323614.1\|2242041_2242203_+	hypothetical protein	Q08JA2	Stx2-converting_phage	5.4e-15	91.3
WP_000372593.1\|2242352_2242532_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	2.7e-23	93.0
WP_173020733.1\|2242556_2243713_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-66	44.4
WP_088895425.1\|2244240_2245469_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_000788996.1\|2246307_2247054_+	ATP-binding protein	V5UQI5	Shigella_phage	2.1e-122	89.2
WP_001118171.1\|2247068_2247491_+	DUF977 family protein	A0A2I6TCA7	Escherichia_phage	1.0e-52	76.6
WP_000403784.1\|2247548_2247905_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.4e-58	99.2
WP_000256997.1\|2247997_2248216_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	6.8e-29	91.7
WP_000610655.1\|2249244_2249610_+	DUF551 domain-containing protein	Q08J61	Stx2-converting_phage	6.1e-30	53.7
WP_000018421.1\|2250007_2250220_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.1e-27	92.9
WP_000940329.1\|2251556_2252156_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.4e-108	94.5
WP_000228038.1\|2252155_2252446_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
WP_000640143.1\|2252442_2252997_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.7e-71	70.5
WP_000124119.1\|2254595_2254961_-	hypothetical protein	NA	NA	NA	NA
WP_000775779.1\|2256544_2257204_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_000057968.1\|2257217_2258300_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.6e-23	34.7
WP_021577276.1\|2258344_2259250_+	monomeric porin OmpG	NA	NA	NA	NA
WP_000075372.1\|2259360_2260359_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000825773.1\|2260513_2261911_+	YcjX family protein	NA	NA	NA	NA
WP_000138744.1\|2261907_2262969_+	TIGR01620 family protein	NA	NA	NA	NA
WP_001306544.1\|2263116_2264658_+	transcriptional regulator TyrR	NA	NA	NA	NA
WP_000084385.1\|2264701_2265208_-	thiol peroxidase	NA	NA	NA	NA
WP_005062222.1\|2265326_2266286_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_005068481.1\|2266260_2266989_-	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_161550600.1\|2268745_2269942_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_119182169.1\|2270317_2271229_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_025759889.1\|2272034_2273495_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	7.3e-42	29.1
WP_000214712.1\|2273530_2273734_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000636575.1\|2274711_2275458_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_005068122.1\|2275594_2277640_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_000901367.1\|2278159_2278255_-	protein MgtS	NA	NA	NA	NA
WP_000087214.1\|2279762_2280662_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_000803659.1\|2280692_2280911_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000091199.1\|2280942_2281326_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000843419.1\|2281345_2281780_-	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000885033.1\|2281991_2282657_+	NAAT family transporter MarC	NA	NA	NA	NA
WP_000210809.1\|2282681_2283872_-	L-arabinose MFS transporter	NA	NA	NA	NA
WP_000257409.1\|2287148_2288075_+	glutaminase B	NA	NA	NA	NA
WP_001735245.1\|2288074_2288434_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_000558039.1\|2288572_2289991_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.1e-18	37.5
WP_000854633.1\|2290217_2291669_+	tagaturonate reductase	NA	NA	NA	NA
WP_161550602.1\|2291965_2293165_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000957853.1\|2293174_2293363_-	hypothetical protein	NA	NA	NA	NA
WP_025759140.1\|2293563_2294478_+	hypothetical protein	NA	NA	NA	NA
WP_001286595.1\|2294481_2295240_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_025759137.1\|2295278_2295569_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_000774196.1\|2295592_2296468_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_025759135.1\|2297529_2298522_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911162.1\|2298521_2299550_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_119182139.1\|2299543_2301079_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	1.2e-21	30.9
WP_000154339.1\|2301327_2302281_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_025759131.1\|2302401_2303262_+	autoinducer kinase	NA	NA	NA	NA
WP_000705197.1\|2305642_2305984_+	DUF1283 family protein	NA	NA	NA	NA
WP_001321287.1\|2306581_2307292_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_005050191.1\|2307399_2307705_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_077697513.1\|2307903_2309025_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	1.6e-89	49.3
WP_077697514.1\|2309058_2309382_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	6.0e-13	45.2
WP_000177820.1\|2309974_2310964_-	hypothetical protein	NA	NA	NA	NA
WP_025759878.1\|2311038_2311548_-	hypothetical protein	NA	NA	NA	NA
WP_040235573.1\|2311649_2311871_-	hypothetical protein	NA	NA	NA	NA
WP_087880099.1\|2312268_2313436_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0

DBSCAN-SWA_8

2561545 : 2687254

Enterobacteria_phage(28.26%)

lysis,head,terminase,holin,capsid,transposase,integrase,tail,portal,protease

attL 2631800:2631859|attR 2641127:2641896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000984517.1\|2561545_2562427_-\|protease	protease HtpX	NA	NA	NA	NA
WP_025757849.1\|2562618_2564667_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	5.7e-85	33.4
WP_000431370.1\|2564686_2565385_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_001043881.1\|2565481_2565979_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA
WP_025757846.1\|2570074_2571514_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001295499.1\|2571631_2571868_+	DUF1480 family protein	NA	NA	NA	NA
WP_001296140.1\|2571972_2572164_+	YebW family protein	NA	NA	NA	NA
WP_077128820.1\|2574828_2576544_+	T3SS effector E3 ubiquitin-protein ligase IpaH3	NA	NA	NA	NA
WP_152030437.1\|2576723_2577347_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	9.9e-73	71.1
WP_005127484.1\|2579182_2579464_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	9.8e-12	42.4
WP_025758140.1\|2579429_2580506_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	5.3e-98	51.7
WP_000976476.1\|2580898_2581240_-	YebY family protein	NA	NA	NA	NA
WP_025758141.1\|2582128_2582503_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|2582641_2582872_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_000011667.1\|2582973_2583630_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_000944269.1\|2583653_2584316_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	3.5e-07	41.6
WP_025758144.1\|2584312_2586373_-	oligopeptidase B	NA	NA	NA	NA
WP_000024749.1\|2586581_2587241_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_005068964.1\|2587567_2587924_-	protein YebF	NA	NA	NA	NA
WP_000173488.1\|2588414_2589593_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_152030404.1\|2589647_2590289_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069457.1\|2590325_2592137_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301720.1\|2592371_2593847_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.9e-79	37.3
WP_001056694.1\|2594185_2595055_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
WP_000044414.1\|2595182_2596625_+	pyruvate kinase	NA	NA	NA	NA
WP_000448385.1\|2596755_2597727_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184045.1\|2597846_2599169_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_001342995.1\|2599184_2600117_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202992.1\|2600195_2600951_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	3.8e-18	28.3
WP_000571470.1\|2600947_2601733_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568525.1\|2601879_2602890_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.8e-08	25.2
WP_000580323.1\|2602898_2603510_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_001386853.1\|2603648_2603714_-	hypothetical protein	NA	NA	NA	NA
WP_005079859.1\|2607664_2607964_+	hypothetical protein	NA	NA	NA	NA
WP_000450409.1\|2608135_2608465_+	DUF496 family protein	NA	NA	NA	NA
WP_005115548.1\|2610020_2610698_-	hypothetical protein	NA	NA	NA	NA
WP_025759760.1\|2610833_2611904_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_021528432.1\|2611900_2612806_-	hypothetical protein	NA	NA	NA	NA
WP_001069642.1\|2617381_2617825_-	hypothetical protein	NA	NA	NA	NA
WP_000711882.1\|2618339_2619182_+	hypothetical protein	NA	NA	NA	NA
WP_000973202.1\|2620178_2620724_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_025759701.1\|2620720_2621464_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_001165578.1\|2621475_2622555_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_128861733.1\|2622616_2623552_+	L,D-transpeptidase	NA	NA	NA	NA
WP_119182152.1\|2624009_2624894_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_000747040.1\|2624868_2626037_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.1e-184	99.7
WP_001010995.1\|2627228_2628179_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_000532920.1\|2630555_2631272_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
2631800:2631859	attL	NA	NA	NA	NA
WP_086558215.1\|2633771_2635001_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_171769178.1\|2635042_2635183_-	hypothetical protein	NA	NA	NA	NA
WP_000747032.1\|2635552_2636721_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_025759341.1\|2636891_2638154_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.1e-73	39.3
WP_001325918.1\|2638491_2639289_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_004974968.1\|2639499_2640537_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_025759339.1\|2640536_2640740_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_001317924.1\|2640798_2641113_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.1e-31	62.6
WP_005069274.1\|2641910_2642327_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.5e-24	72.0
2641127:2641896	attR	NA	NA	NA	NA
WP_000935258.1\|2642921_2643134_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_000929754.1\|2643301_2643580_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.4e-10	43.8
WP_025759819.1\|2643581_2644640_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	47.7
WP_000140020.1\|2644640_2645006_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.1e-39	68.1
WP_025759817.1\|2645002_2645713_+	antiterminator	I6PDF8	Cronobacter_phage	6.7e-57	48.3
WP_000839572.1\|2646513_2646729_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_001088287.1\|2646827_2647502_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
WP_000631709.1\|2647498_2647846_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.1e-44	73.8
WP_000092290.1\|2651252_2651717_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	1.2e-67	90.8
WP_001139556.1\|2651759_2652110_+	HNH endonuclease	Q8W633	Enterobacteria_phage	4.7e-64	99.1
WP_024166447.1\|2652257_2652740_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	8.7e-85	98.1
WP_040235539.1\|2652739_2654497_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.7
WP_000478600.1\|2654508_2654691_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.4e-19	80.0
WP_000466011.1\|2654690_2655932_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	2.2e-228	93.5
WP_025759107.1\|2655909_2657640_+\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	5.5e-198	99.2
WP_000924704.1\|2657684_2658008_+\|head,tail	phage gp6-like head-tail connector protein	Q8W626	Enterobacteria_phage	9.7e-56	99.1
WP_000702444.1\|2658004_2658421_+\|head	phage head closure protein	Q8HAC9	Salmonella_phage	9.0e-46	69.1
WP_025759103.1\|2658386_2658911_+	hypothetical protein	Q8W625	Enterobacteria_phage	3.3e-93	97.1
WP_000497744.1\|2659479_2659641_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.2e-15	76.6
WP_000155744.1\|2659637_2661134_+\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8W623	Enterobacteria_phage	5.9e-273	97.4
WP_001062338.1\|2661133_2661490_+\|tail	phage tail tube protein	Q8W622	Enterobacteria_phage	5.3e-63	98.3
WP_025759099.1\|2661910_2663860_+\|tail	phage tail tape measure protein	Q8W620	Enterobacteria_phage	0.0e+00	97.8
WP_040234363.1\|2664968_2665592_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	7.3e-76	74.9
WP_032156999.1\|2665771_2667415_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_161550607.1\|2667730_2668399_-	methyltransferase	NA	NA	NA	NA
WP_000937511.1\|2668455_2668725_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-19	81.7
WP_001007781.1\|2669802_2670453_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_000920127.1\|2672458_2672872_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_001347103.1\|2673004_2673676_+	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_025759261.1\|2673675_2675034_+	two-component system sensor histidine kinase HprS	NA	NA	NA	NA
WP_000218218.1\|2675141_2675993_-	protein deglycase HchA	NA	NA	NA	NA
WP_152030430.1\|2677363_2677576_-	porin	NA	NA	NA	NA
WP_171763895.1\|2677635_2678863_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.1e-171	95.7
WP_032155863.1\|2680848_2681106_+	hypothetical protein	NA	NA	NA	NA
WP_025758774.1\|2681752_2683171_+	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.8e-101	55.1
WP_000228688.1\|2683151_2683622_+	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	7.6e-33	47.6
WP_025758775.1\|2683610_2684531_-	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_152030428.1\|2684703_2685621_+	DUF808 domain-containing protein	NA	NA	NA	NA
WP_000009302.1\|2685699_2685882_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_173020735.1\|2686040_2687254_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	5.5e-168	99.3

DBSCAN-SWA_9

2708676 : 2772082

Enterobacteria_phage(53.33%)

transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005079763.1\|2708676_2709447_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1W6JP07	Morganella_phage	3.7e-130	97.3
WP_000790504.1\|2710263_2710497_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000118897.1\|2710493_2711699_-	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_001392280.1\|2711885_2712299_+	lipoprotein	NA	NA	NA	NA
WP_001245691.1\|2712332_2713820_-	alpha-amylase	NA	NA	NA	NA
WP_001057836.1\|2713897_2714263_-	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_000270672.1\|2714262_2714673_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_000146784.1\|2714697_2716104_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_025759942.1\|2716369_2718022_+	flagellin FliC	NA	NA	NA	NA
WP_025759941.1\|2718186_2718906_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA
WP_005048734.1\|2718951_2719503_+	flagella biosynthesis regulatory protein FliZ	NA	NA	NA	NA
WP_005069139.1\|2719590_2720391_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001128248.1\|2720495_2721482_+	D-cysteine desulfhydrase	NA	NA	NA	NA
WP_001158220.1\|2721496_2722165_+	cystine ABC transporter permease	NA	NA	NA	NA
WP_001272995.1\|2722161_2722914_+	L-cystine ABC transporter ATP-binding protein YecC	G9BWD6	Planktothrix_phage	6.0e-32	41.4
WP_000106474.1\|2723796_2724021_-	DUF2594 family protein	NA	NA	NA	NA
WP_000590347.1\|2724007_2724184_-	hypothetical protein	NA	NA	NA	NA
WP_000611335.1\|2724479_2725136_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_001283406.1\|2725132_2726965_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_001160187.1\|2727021_2727570_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_000847902.1\|2728219_2728885_+	UPF0149 family protein YecA	NA	NA	NA	NA
WP_025759935.1\|2728946_2730158_-	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000377224.1\|2730347_2730587_+	YecH family protein	NA	NA	NA	NA
WP_000917208.1\|2730623_2731121_-	non-heme ferritin	NA	NA	NA	NA
WP_001237866.1\|2731291_2731615_-	hypothetical protein	NA	NA	NA	NA
WP_010723106.1\|2731877_2731964_+	stress response protein AzuC	NA	NA	NA	NA
WP_000082120.1\|2732078_2732330_+	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_000179469.1\|2732409_2732913_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_025759934.1\|2733709_2734699_+	arabinose ABC transporter substrate-binding protein AraF	NA	NA	NA	NA
WP_025759932.1\|2734768_2734909_+	hypothetical protein	NA	NA	NA	NA
WP_025758825.1\|2736117_2737851_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	2.6e-86	33.5
WP_005048653.1\|2738066_2738633_+	VOC family protein	NA	NA	NA	NA
WP_001185715.1\|2738646_2739393_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214307.1\|2739780_2740881_+	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_119182133.1\|2740905_2743335_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564755.1\|2743499_2744471_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_025758823.1\|2744467_2745211_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
WP_000252980.1\|2745251_2745647_-	MAPEG family protein	NA	NA	NA	NA
WP_050544124.1\|2745699_2746470_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_040234742.1\|2749174_2749864_+	antiterminator	I6PDF8	Cronobacter_phage	1.1e-56	48.9
WP_000140459.1\|2751049_2752246_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001074424.1\|2752509_2752911_+	hypothetical protein	A0A2R9YJP4	Escherichia_phage	8.7e-38	66.9
WP_000753026.1\|2752922_2753294_+\|tail	tail attachment protein	NA	NA	NA	NA
WP_000677116.1\|2753280_2753871_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.4e-78	78.2
WP_005067061.1\|2754277_2755018_+	Ig-like domain-containing protein	A5LH35	Enterobacteria_phage	3.5e-125	94.3
WP_000478925.1\|2755076_2755463_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	9.2e-61	91.4
WP_001161002.1\|2755471_2755801_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	3.8e-55	98.2
WP_000447263.1\|2758813_2759143_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	8.9e-57	96.3
WP_025758205.1\|2759142_2759841_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.9e-120	89.2
WP_001233104.1\|2764733_2765333_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	3.6e-104	93.0
WP_173020736.1\|2765396_2766683_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	6.7e-39	59.2
WP_005140132.1\|2767556_2769308_-	hypothetical protein	NA	NA	NA	NA
WP_001217553.1\|2769908_2770157_-	DinI-like family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_000530007.1\|2770253_2770430_+	hypothetical protein	NA	NA	NA	NA
WP_134799987.1\|2770885_2772082_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

2856483 : 2913831

Enterobacteria_phage(43.75%)

transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000140459.1\|2856483_2857680_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_025759052.1\|2858655_2861778_+	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA
WP_000130874.1\|2864844_2866260_+	MFS transporter	NA	NA	NA	NA
WP_000675135.1\|2866256_2867660_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	9.2e-34	29.8
WP_025759047.1\|2867656_2868379_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.3e-31	33.6
WP_005049106.1\|2869038_2870400_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	7.1e-217	99.5
WP_001295425.1\|2870741_2871059_-	hypothetical protein	NA	NA	NA	NA
WP_000807346.1\|2871464_2872364_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	9.8e-13	29.0
WP_119182064.1\|2872445_2873225_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844249.1\|2873324_2874365_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000823288.1\|2875772_2876057_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182919.1\|2876087_2876540_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_025759044.1\|2876549_2877812_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_025759041.1\|2877840_2878695_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129573.1\|2879002_2880055_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_025759039.1\|2880208_2880685_+	MFS transporter	NA	NA	NA	NA
WP_000011983.1\|2881681_2882647_+	sugar kinase	NA	NA	NA	NA
WP_000434038.1\|2882620_2883367_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_005069468.1\|2883418_2884237_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	2.5e-23	37.1
WP_024222623.1\|2884301_2885102_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195611.1\|2885098_2885887_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2886109_2886382_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_025759034.1\|2886502_2887351_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153074.1\|2887569_2887908_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_025759032.1\|2889038_2891519_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677392.1\|2891534_2892209_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830468.1\|2892289_2892832_-	fimbrial protein	NA	NA	NA	NA
WP_011110605.1\|2893124_2893406_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|2893667_2894777_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_040234817.1\|2894908_2896942_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.0e-54	27.6
WP_086020934.1\|2897337_2898493_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.4e-67	44.7
WP_005063603.1\|2898518_2898710_-	hypothetical protein	NA	NA	NA	NA
WP_161550645.1\|2898846_2900274_+\|tail	tail fiber protein	Q7Y4D4	Escherichia_virus	3.4e-169	63.6
WP_000902877.1\|2900276_2900822_+\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	2.5e-72	73.1
WP_161550612.1\|2902210_2902834_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	9.9e-73	71.1
WP_032156999.1\|2903013_2904657_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA
WP_161550607.1\|2904972_2905641_-	methyltransferase	NA	NA	NA	NA
WP_000937511.1\|2905697_2905967_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-19	81.7
WP_001261936.1\|2906082_2906331_-	DinI-like family protein	A5LH55	Enterobacteria_phage	4.1e-38	97.6
WP_161550613.1\|2906728_2908075_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_001295431.1\|2908282_2909968_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_005048999.1\|2909964_2910684_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_005063442.1\|2910730_2911201_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.6e-81	98.7
WP_005049020.1\|2911241_2911703_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-75	99.3
WP_025759950.1\|2911827_2913831_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4

DBSCAN-SWA_11

3366675 : 3436496

Enterobacteria_phage(15.79%)

integrase,transposase,tail,tRNA

attL 3387611:3387628|attR 3403445:3403462

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094099486.1\|3366675_3367371_+\|transposase	IS1 family transposase	A0A077SLN4	Escherichia_phage	8.9e-123	92.2
WP_040234980.1\|3367364_3370484_-	DUF5107 domain-containing protein	NA	NA	NA	NA
WP_000189282.1\|3370490_3370664_-	hypothetical protein	NA	NA	NA	NA
WP_025758211.1\|3370781_3371975_+	ROK family protein	NA	NA	NA	NA
WP_000919159.1\|3372172_3373426_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
WP_000883129.1\|3373752_3374943_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000717694.1\|3374987_3375326_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_005047323.1\|3375386_3376721_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
WP_001215861.1\|3376710_3377424_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_005047325.1\|3377588_3379016_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.3e-16	24.9
WP_000970142.1\|3379573_3383461_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	2.2e-130	58.6
WP_000734212.1\|3383718_3385275_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001295367.1\|3385271_3385808_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190655.1\|3385832_3386468_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_025758216.1\|3386676_3387525_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
3387611:3387628	attL	NA	NA	NA	NA
WP_161550620.1\|3391486_3392716_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	2.7e-74	40.8
WP_000902877.1\|3392739_3393285_-\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	2.5e-72	73.1
WP_011069472.1\|3393287_3393806_-	hypothetical protein	Q7Y4D4	Escherichia_virus	3.5e-39	53.0
WP_173020739.1\|3393869_3395097_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.2e-176	98.7
WP_000631709.1\|3398537_3398885_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.1e-44	73.8
WP_001088287.1\|3398881_3399556_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
WP_001138333.1\|3402099_3403200_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000054752.1\|3403414_3403675_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
3403445:3403462	attR	NA	NA	NA	NA
WP_000128776.1\|3403868_3403949_-	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_000986029.1\|3404368_3404749_-	holo-ACP synthase	NA	NA	NA	NA
WP_004969731.1\|3404748_3405480_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_161550623.1\|3405491_3406220_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000020748.1\|3406231_3407137_-	GTPase Era	NA	NA	NA	NA
WP_001068343.1\|3407133_3407814_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_000002542.1\|3408085_3409060_-	signal peptidase I	NA	NA	NA	NA
WP_000790168.1\|3409075_3410875_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000589070.1\|3411072_3411552_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_025759265.1\|3411548_3412505_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168466.1\|3412504_3413155_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_005070454.1\|3413187_3413763_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_032157127.1\|3413759_3413915_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001094509.1\|3414170_3415793_+	L-aspartate oxidase	NA	NA	NA	NA
WP_001298974.1\|3415777_3416515_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3416646_3417981_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_005070459.1\|3418015_3418897_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000187873.1\|3418999_3419587_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|3419642_3420026_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|3420330_3421020_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997396.1\|3421067_3422105_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3422311_3422731_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_025759270.1\|3422799_3423498_+	DTW domain-containing protein	NA	NA	NA	NA
WP_119182095.1\|3423529_3426190_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_005051257.1\|3426303_3427659_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_005105704.1\|3427704_3428028_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3428024_3429323_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_000483770.1\|3435149_3436496_+\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

3528705 : 3547909

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272898.1\|3528705_3531267_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
WP_000613355.1\|3532075_3532843_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847961.1\|3533038_3533947_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	6.6e-118	76.5
WP_001278995.1\|3535202_3535841_+	aldolase	A0A077SK32	Escherichia_phage	3.5e-81	75.5
WP_161550624.1\|3535874_3536570_+\|transposase	IS1 family transposase	A0A077SLN4	Escherichia_phage	1.5e-122	92.2
WP_000987799.1\|3536627_3536855_-	hypothetical protein	C9DGL3	Escherichia_phage	2.5e-34	92.0
WP_000606608.1\|3536870_3537782_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	6.1e-55	41.2
WP_094099499.1\|3537867_3539023_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-67	44.4
WP_119182078.1\|3539163_3541260_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	8.0e-175	48.9
WP_001249841.1\|3541261_3541513_-	helix-turn-helix domain-containing protein	A0A2D1GNH1	Pseudomonas_phage	1.1e-17	53.0
WP_001224023.1\|3541665_3542229_+	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	1.1e-35	55.8
WP_000767712.1\|3542926_3543520_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_001208075.1\|3543666_3544074_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000081550.1\|3544193_3545186_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_119182077.1\|3545248_3546388_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|3546527_3547154_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_024260645.1\|3547147_3547909_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.9e-58	47.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP045523

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39302 : 46202

Salmonella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000239590.1\|39302_40178_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001245884.1\|40730_41033_-	hypothetical protein	NA	NA	NA	NA
WP_000587689.1\|41029_41656_-	ParA family plasmid-partitioning AAA ATPase	E5FFJ3	Burkholderia_phage	2.0e-17	31.1
WP_000457515.1\|41859_43131_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.2e-143	60.4
WP_000109071.1\|43130_43568_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
WP_000618110.1\|43564_43813_-	DinI-like family protein	Q2A098	Sodalis_phage	1.9e-14	48.0
WP_001134370.1\|44207_45134_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_001310011.1\|45130_45442_+	hypothetical protein	NA	NA	NA	NA
WP_000086153.1\|45518_46202_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	37.9

DBSCAN-SWA_2

50610 : 58215

Pseudomonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000936285.1\|50610_52512_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.1e-32	29.1
WP_031222835.1\|52661_53147_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.0e-41	72.8
WP_000006020.1\|53204_53438_+	DUF905 domain-containing protein	A0A096XUX0	Cronobacter_phage	1.7e-06	53.2
WP_001145488.1\|53496_55455_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.5e-21	29.6
WP_001387500.1\|55509_55944_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276270.1\|55940_56660_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000977995.1\|56656_57253_+	hypothetical protein	A0A0N7KZV3	Escherichia_phage	9.0e-15	56.6
WP_000117611.1\|57714_58215_+	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	2.4e-05	27.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045522

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP045523

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection