CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	2 crisprs	cas9,cas14j	0	6	0	0
NZ_CP047142	Lactobacillus sp. C25 chromosome, complete genome	6 crisprs	cas14k,cas14j,cas2,cas3,c2c9_V-U4,RT,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,csa3,Cas14u_CAS-V	0	19	9	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047143_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047143_1

17563-17917

orTypeII

Consensus_repeat	Method
GTCTTAGATGGTGGTCAAAACAGAT	CRISPRCasFinder

5 spacers

cas14j

The CRISPR arrays of NZ_CP047143_1

>merge|NZ_CP047143|1|17563-17917|CRISPRCasFinder
GTCTTAGATGGTGGTCAAAACAGATACTTATAAAACATTAAAATCAATTTGATTTCCATCCGCATCGTCTTAGATGGCGGTCAAAATAGATACTTGTAAAACCTGAAATATAATCTTCCCAGTTGAATCCATGTCTTAGATAGTAGTCAAATCAGATACTTGTAAAACTAGATCAAAATAACATTAATACTCAGCCAGGTCTTAGATGGTAGTCAAATCAGATACTTGTAAAACTTTTCATCATTAATCCACCTTTCAGATTAGGTCTTAGATGGTGGTCAAAACAGATACTTATAAAACAACATGTGTAGCTTCTCCTTTGATGTATTCGTCTTAGATGGTGGTCAAAACAAAT

>NZ_CP047143|1|1|17563-17917|CRISPRCasFinder
GTCTTAGATGGTGGTCAAAACAGAT	ACTTATAAAACATTAAAATCAATTTGATTTCCATCCGCATC
GTCTTAGATGGCGGTCAAAATAGAT	ACTTGTAAAACCTGAAATATAATCTTCCCAGTTGAATCCAT
GTCTTAGATAGTAGTCAAATCAGAT	ACTTGTAAAACTAGATCAAAATAACATTAATACTCAGCCAG
GTCTTAGATGGTAGTCAAATCAGAT	ACTTGTAAAACTTTTCATCATTAATCCACCTTTCAGATTAG
GTCTTAGATGGTGGTCAAAACAGAT	ACTTATAAAACAACATGTGTAGCTTCTCCTTTGATGTATTC
GTCTTAGATGGTGGTCAAAACAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047143.1\|WP_065989273.1\|20310_21249_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989367.1\|7355_8516_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP047143.1\|WP_081307098.1\|12359_14696_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP047143.1\|WP_065989278.1\|17170_17437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_081307097.1\|21910_22126_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989272.1\|21248_21521_+\|DUF3850-domain-containing-protein	unknown	unknown	gnl\|CDD\|372409
NZ_CP047143.1\|WP_065989276.1\|17966_19352_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989263.1\|22384_22609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989259.1\|23218_23545_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989265.1\|22162_22360_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989280.1\|15303_16653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989288.1\|10493_11195_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989281.1\|14980_15172_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|317593
NZ_CP047143.1\|WP_065989282.1\|11876_12344_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989279.1\|16816_17158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989290.1\|8777_10136_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375451
NZ_CP047143.1\|WP_065989257.1\|23845_24157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989261.1\|22638_22911_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989275.1\|19486_19816_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989286.1\|11447_11720_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853

Protein	Function_ID	Function_description	E-value
NZ_CP047143.1\|WP_065989367.1\|7355_8516_-\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.26472e-42
NZ_CP047143.1\|WP_081307098.1\|12359_14696_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
NZ_CP047143.1\|WP_065989281.1\|14980_15172_-\|hypothetical-protein	gnl\|CDD\|317593	pfam15202, Adipogenin, Adipogenin. This family of proteins is involved in the stimulation of adipocyte differentiation and development.	0.00276403
NZ_CP047143.1\|WP_065989290.1\|8777_10136_-\|hypothetical-protein	gnl\|CDD\|375451	pfam17966, Mub_B2, Mub B2-like domain. This entry corresponds to the Mub B2 domain. This domain is related to the Mub B1 domain pfam17965. This domain may be involved in mucin binding. This domain is often found associated with the related pfam17965 in bacterial cell surface proteins.	1.54247e-05
NZ_CP047143.1\|WP_065989272.1\|21248_21521_+\|DUF3850-domain-containing-protein	gnl\|CDD\|372409	pfam12961, DUF3850, Domain of Unknown Function with PDB structure (DUF3850). The search results from NCBI sequence alignment indicates a conserved domain belonging to ASCH superfamily. Dali searching results show that the protein is a structurally similar to the PUA domain, suggesting it may be involved in RNA recognition. It has been reported that the deletion of PUA genes results in impaired growth (RluD) and competitive disadvantage (TruB) in Escherichia coli. Suggestions have been put forward that, apart from their usual catalytic role, certain PUS enzymes (e.g. TruB) may also act as chaperones for RNA folding. The interface interaction indicates that the biomolecule of protein NP_809782.1 should be a dimer.	5.98178e-25
NZ_CP047143.1\|WP_065989286.1\|11447_11720_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	9.28667e-43

>NZ_CP047143.1|WP_065989278.1|17170_17437_+|hypothetical-protein
MTKLIKFKKWKKFDEEEKDKQQSINIIGYYFGFMLMWAGIFSFICWLVTITKFNFDQQFGISVAFNIFFWSGIIIRYIFDRRERLLEQ
>NZ_CP047143.1|WP_065989279.1|16816_17158_+|hypothetical-protein
MVSNYDLKRIHQALWQLDLVNDYFKRMYQSKFNRKWKIIKQDVQTELIDNTWLITGYEGMQLKNGSDVLELLYSEKKKWYLRTSPSKTAFLRNMEYQGLYKLWEECCNDLNYE
>NZ_CP047143.1|WP_065989280.1|15303_16653_-|hypothetical-protein
MFEKFLDKFRGLFKTKSSVDNTADNKENKAEPFKQGVFLPSVSEKESRIINNPTIPKVLLEKDPALRKSWMIDLAKDEIKQYKNLSSEMTNSSQLQGNVFISANRVLLNSVLDQALHLGVSNITLISAKADNAHSLNLWDAASDIVAHRLQELFLSDKNLSAEEFRDESAIIEYFVSLTTLATFLNGSIPSLSEFLRLFDDHRHLKESIELVKNDYEQHQSYEEMDKYSQLLFGKKSNLNHSSLSNRTNINYRMSQLIMWFDTLLKGWNSHSNKEMHISLVRKVIKTGNDIHKTLADQEIKHLLLGSNQVSLKELIKPKNNTGVVLILIPEEKKHIGRVIIDSLFSNFFSYYTLDTFSKDTAEESKVSYPLINICLDNWSKYASNAQLFWISQLTGKRITLLASADEKLTISNYSVVTRVLCYIKRLGLNGQYQIVDYQDSNMSDTKKG
>NZ_CP047143.1|WP_065989281.1|14980_15172_-|hypothetical-protein
MKIKLLKLMNDYKFYVLSFWLTIILGMLSFVLTLIFAFLGNITFSVVLVLLGYIFLIANAMLQ
>NZ_CP047143.1|WP_081307098.1|12359_14696_-|penicillin-binding-protein
MRDQKDYLDEKDGYVDLNNYLDQDQNDEELESESYDDYDNYNEDEEEADDTEEAPDPSRRRMTRYHRQSKAGKIIKRIFAWSFTLLLLGIISSIGIFAYYAKNAPIVTQTKLQSEGSSALYTSDGKLLLTLGAERRNYLHSEKIPQRMKDAVISVEDKRFYREPFGLDPIRIVGSLVANIKGHDISAGGSSITQQLIKLSVFSTDASQRTLKRKAQETWLAMQISRQYSKEQILEFYINKVYMGYNTFGLGTAASYYFGKSPSDLDLAQTALLAGMLNAPTQFDPYLYPQNAQYRRDIVLYSMLRNNKITKQEYQQAIKEPVQTGLRPRHSNNDHSQRRKIDDPYIKEVVNEAKEKGFDPYNSNLKITVNIDQKAQNELYELANSKKIPFTNDKMQVGATVVDPTNGHAIAIVGGRHLPNVALGYNRAVQTGRSTGSSIKPILDYAPAIEYKNWSTAQILSDTPYIYSGTNIQLFDWDNRYLGPMTMRYALEQSRNVPAVRTLEDVGFNKGIKFAKQMDITINKKQGLSVAIGANASTLQMAGAYGALANDGVYHKPQFISKIETPDGVVRNYDTSGKRVMKSSTAYMVTDMLKGVITHGAGTQANIKDLHQAGKTGTVKYSDGEIKKYPSYNGTPKDSWFVGYTPKYSIAVWTGYDNLSDGKISGQGENAAQLLYKNMMTYLMKGKGNPDWHKPDTVVSQKYLSGRTVTNELYVKGHVPKPPEIKKPKLEDKEREEREEEQNNNQRVIYRQSQQQRPRVIIRQQQPRTIIRHYYYYR
>NZ_CP047143.1|WP_065989282.1|11876_12344_-|hypothetical-protein
MSEVLNLATKTLELKVYVFASSVEVNHAFFKSTWGCIVQPNDEKNIFNSSYFQYLKADGQLTLDPINPWRRALLLAFSALKDLGQTKNVVQVIVPSKEVVNKIGTLLTTLDDRESDLKNHIRFATFSWPETQEDTANIQALENNVSLYMDKRLGA
>NZ_CP047143.1|WP_065989286.1|11447_11720_+|HU-family-DNA-binding-protein
MNKNDLVKAVAVKTELSQRDAKKAIDAVFGTIQEALAKGEKLQFVGFGTFEVRERAERKGRNPQTGETITIPATKVPAFKPGKELKKAVK
>NZ_CP047143.1|WP_065989288.1|10493_11195_-|hypothetical-protein
MSNQRVILADYYGYKAQFYHATFDHLSHSKDDTAEKKPVALLKNIYLVDANDKRKSNIRQDTYIDESGRAIIADHCWVSLNEEWFKLPFELLQGDEIYFLADVDQYPITRSDLIQKRKEIWQQAKQLNNSLYSAWQGSKHNYHGAQYSLMYEQMRAHMQSNNDMARQQAENIPMVDYTLTNLKSIKVAHYKDRKAKRLRYNVNQFLKSGYRYTGFLAGRSFRYIQRNNPSVFN
>NZ_CP047143.1|WP_065989290.1|8777_10136_-|hypothetical-protein
MKFNQKKRKKVLVRSTAALGALLVCGGAVTSSPLVSHADETTTSHTETVAPSGSALDNTKWTAIDKAKTITRTIHYIDENGKTVAPDVVESHTGEVFTTKNGDTTVNRAFAIVNGVATNIQPKFAQVVSPSVRGYKLKSTQYATIPEQGWSLDGTQVKDDKTGFYTNLSQDEVINVVYEKDGTTTELKDEVPVAGYTVLSVKTMTRTIQYQDENGKQLYSPEVETVKYETVASNKLTPKEQQDSKNQQVAVVNITRDADGNVTGQSAQILNTPAYKLKDVISPKINGMKLQNSKFKVLSGQYMWLSDKPYVHATLDNGLDQYMVNDEIVTVIYVPQTKKDQKKEANKKKDAEKKAKQTKNAKDTAAAAGTVSDSSDGTGSGSGSASADEGSVGSSNSGDFDGGSGSVGGDSGSTLPQTGNKKASSSLLGAGVVLLLSSLTMAWDGIKKRLAK
>NZ_CP047143.1|WP_065989367.1|7355_8516_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLKGIKLRLYPNKLQQDQLWQMFGNDRFVWNQMLAMMNERYKNNKKLPFLSKFKLDCLLKPLKQEYPFLKNSDSSSLQVVDASLNQAWKNFFSDKTGKVGKPRFHSRKYLKYSYTGKSVIQVIGKRYLKMPKLGYIKTSKTKVLKDTKIKRYTVVLEPTGKYYLSLQVEARPVEKFNQTGKSVGIDVGLADLAILSNGLKYPSFDSSYYEKKAVCWQKKYSRRRNLAKRLCLQDKYRKVLCPRNLDSFSNWKKAQKTKAVYQAKVAFQRKDYLHKLTTHLVKQYDVIVIEDLKVKNLQKNHHLAKSIANASWSIFRQMLEYKCQWYGKKLIAVDPKNTSRICSKCGYNSGEKPLDIREWTCPKCKTHHDRDINAAINILNKAKPVL
>NZ_CP047143.1|WP_065989276.1|17966_19352_-|hypothetical-protein
MIGFLKRLFNSNATDTMQQEEAPTLLLGRTIKKNKNVFLPIKEDKYGYSRANQLVIAKNPQEVSDRIFSKYIRQDFKQQEAYHANIEVVTNKSEWNNLSFQSHFLSSVSIICMKSSQAQNLSRQAISESIPTRDIHIFDPADSTSPRLDLMSLPNNNVIAFLDNILNQWQQDDIEYSLGERKNWITWMVMLEKAYAKLEHREPTFSDLLEFFRNPSTIMDIHHYVEDNLNEFSEPWVKELTDTLDTNFHLGDSKQNNINFDIYEGLLKYRDKNILGKFLFDEDRPSASLPEIWSKGGICIFSLADDLLSKEDSATWGSIIRSNFTAGLQEKAQTQNKGTLQSIYMFNASDYLDDEWYKLLISTSTNTPTISFNIVVSADYLKEALDGNTFLSNFLQSKRLVKSIYRSADTIDFEFYDHYKYLFSIERDQNKSLKQAIASSPLPSGILITKFNDHSREIYRY
>NZ_CP047143.1|WP_065989275.1|19486_19816_+|hypothetical-protein
MNKDAIWLAAFFLFVITFSVWLGEIMMNYVNQRVKDKRLKIAGNVLAVISVLCLIFSTIAKSISFRTPVTLKMQALDDWYNILSGVGVIAVIGVVIILYINSQTKRDKE
>NZ_CP047143.1|WP_065989273.1|20310_21249_+|hypothetical-protein
MKYKKLKKLQHNRRATAYRTKKMIYENNPQSAALLELAHDIKKENIWQMPYVGRDQLADAEEYNATEDDICNYVRTQTIPFTINWTEHTGEKERQKLKPIAENHEIVRWQALLSNVSVVNDSGKLRGFILLDKVVQLDPDSTDMYIGFRRSLMDNLLDYHMWLPIDRILYFGNKNMQEMAQGDCLMGYSYIVAYHTKGKKSYGFGKTIITDCGVVAGDKHIRTVTGWKAVNGEVLSDYSREEDWLIKLEYGQDYQMQLNRYADKTLENLRHIRPKMHIHYQTDNQVSYQERFDFAPLPDIEEFLMNNKKGEH
>NZ_CP047143.1|WP_065989272.1|21248_21521_+|DUF3850-domain-containing-protein
MRVYSADGVRIIEVKDLKVEPKYFQAQKEGRKNFDIRKNDRDYKVGEILILREYDSETGKYSGRRIFCLITYITDFEQKPGYVVLGTKRI
>NZ_CP047143.1|WP_081307097.1|21910_22126_+|hypothetical-protein
MVNLNNDNIMTAKDASKIWGKNPAYVRSMINEYPEKWPTGSWRKFGNTLVVTTKGMEKVTGIKDPRKKGKK
>NZ_CP047143.1|WP_065989265.1|22162_22360_+|hypothetical-protein
MEKTKVVNLSKALKEAVFADEEEKETKNDDEAMESLGSYILLTTLISLSSGLLFWIIVFHILQML
>NZ_CP047143.1|WP_065989263.1|22384_22609_+|hypothetical-protein
MDSRKYVNSTVEKNKNIIMILVLIATACAGFISCVNDKTISFLIILMFTVCVIGILSLLLITQVLKRYLAVTAK
>NZ_CP047143.1|WP_065989261.1|22638_22911_+|hypothetical-protein
MKTINMEYLNAQHDFFLCALIALLMVVIAVVINLLIARRLNNSAELTEVETKRIVILNKIMSGYGVILILMAGVTVYYLFTYIQVSAQFK
>NZ_CP047143.1|WP_065989259.1|23218_23545_+|hypothetical-protein
MTLHTMSYLFAFYLTLFAVGAGIEIGIMALTADYYLSLGKKYAINMRNLLILALLIIVATGVMVVNFFAKGVMSASVIHILLAIIGAIEGLVLVRFLLPFLIIKKPLE
>NZ_CP047143.1|WP_065989257.1|23845_24157_+|hypothetical-protein
MKRRFKMYHIFKGKKVKGLIDTYPGPHGLPETSVNDDIYFVGSTEGDPSNLGEFLFEQTVFNGDKQQYKVDFEPHGEKTVKDWLVRLQTLGYIRDWQSKDVTD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047143_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047143_2

173259-173397

TypeV

Consensus_repeat	Method
GGACATGATCGGATGTGGATAACTTTTAAAATTGCACACGCTT	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP047143_2

>merge|NZ_CP047143|2|173259-173397|CRISPRCasFinder
GGACATGATCGGATGTGGATAACTTTTAAAATTGCACACGCTTGCGTATATTTGAAAGCGGTATTCAACTTAAGGGACACCATCGGATATTTAAAGGGACATGATCGGATGTGGATAACTTTTAAAATTGCACACGCTT

>NZ_CP047143|2|2|173259-173397|CRISPRCasFinder
GGACATGATCGGATGTGGATAACTTTTAAAATTGCACACGCTT	GCGTATATTTGAAAGCGGTATTCAACTTAAGGGACACCATCGGATATTTAAAG
GGACATGATCGGATGTGGATAACTTTTAAAATTGCACACGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047143.1\|WP_065989315.1\|170317_170770_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989302.1\|178827_179136_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989306.1\|172078_172483_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259854
NZ_CP047143.1\|WP_065989313.1\|171039_171675_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP047143.1\|WP_065989317.1\|169984_170308_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989321.1\|165925_169372_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380191
NZ_CP047143.1\|WP_081307100.1\|177382_178528_-\|DNA-entry-nuclease	unknown	unknown	gnl\|CDD\|372824
NZ_CP047143.1\|WP_065989325.1\|164052_165258_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|380090
NZ_CP047143.1\|WP_065989323.1\|165611_165911_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180965
NZ_CP047143.1\|WP_065989305.1\|172566_172851_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989303.1\|174329_175700_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP047143.1\|WP_065989308.1\|171667_172039_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989319.1\|169577_169949_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047143.1\|WP_065989369.1\|175858_177019_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NZ_CP047143.1\|WP_065989323.1\|165611_165911_-\|hypothetical-protein	gnl\|CDD\|180965	PRK07408, PRK07408, RNA polymerase sigma factor SigF; Reviewed.	0.00100335
NZ_CP047143.1\|WP_081307100.1\|177382_178528_-\|DNA-entry-nuclease	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	9.82958e-13
NZ_CP047143.1\|WP_065989303.1\|174329_175700_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.82187e-26
NZ_CP047143.1\|WP_065989306.1\|172078_172483_-\|hypothetical-protein	gnl\|CDD\|259854	cd13832, IHF, Integration host factor (IHF) and similar proteins. This subfamily includes integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms. This subfamily also includes the protein Hbb from tick-borne spirochete Borrelia burgdorferi, responsible for causing Lyme disease in humans. Hbb, a homodimer, shows DNA sequence preferences that are related, yet distinct from those of IHF.	1.33393e-06
NZ_CP047143.1\|WP_065989313.1\|171039_171675_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	6.80394e-38
NZ_CP047143.1\|WP_065989321.1\|165925_169372_-\|hypothetical-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	8.11625e-14
NZ_CP047143.1\|WP_065989369.1\|175858_177019_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.37141e-44
NZ_CP047143.1\|WP_065989325.1\|164052_165258_-\|C40-family-peptidase	gnl\|CDD\|380090	pfam18013, Phage_lysozyme2, Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.	1.51468e-30

>NZ_CP047143.1|WP_065989305.1|172566_172851_-|hypothetical-protein
MANIKFIQINNTLYSLKEFSKAYSLSYSTVRKYYRLGFRGNALLNKTKSVTQSGLQVSEKHFDSKFAASKYLQIPKSTFYRKLKNGTLDIELNA
>NZ_CP047143.1|WP_065989306.1|172078_172483_-|hypothetical-protein
MNNMDKFDDLFTEADEENKPKKTRENNTKIADGKIYREVSQITGYPQKEVAEICTQLFEVLILEVFQVGNRVNFRNFGTFWQKKTKSNNNNLVKLNHTRAKDPSNIKANGVNYSLTFRMSKNIKKRIASIRRKD
>NZ_CP047143.1|WP_065989308.1|171667_172039_+|hypothetical-protein
MDRDAMYEEINSLEMRINFIMRLAGYFDIVYGIAMALISVVVWGAMSLGFLQGVSSLILGILIIFRNSRLEENAWIHQDTILFLTILNLGLGFVISSLLILYVYLTRRKIEQMTLELEQEVLR
>NZ_CP047143.1|WP_065989313.1|171039_171675_+|signal-peptidase-I
MSKLRQIWGWIWPSLVVILIALGFVTFVAKPSTVSGPSMEPNLQDKEHVWAFTRLPIHHGSVIVFDSYGVDPVSSGHRLYVKRVIGLPGDTVTSDHGTIYVNDRPINQNYISQKQQDSTGSWNFKKLAKKNKWQKNIDVVKVPQGCYFVLGDHRTVSNDSRYFGFVPQQNVVGVAKVFWWNVAFGSVTKQEQINIDKQWKDFYQAGDSKNG
>NZ_CP047143.1|WP_065989315.1|170317_170770_-|hypothetical-protein
MNPTIKVLNPQDPKADPNPYVEAVSSDDEDVTYTLEDWVKVIAKDGNGHDISDRVVYDASAVDYTKAGDYPVEVSVMDDQFNMSSAFFTVHVLSPKEVKLVESGRPLRRESEVQRAAKSDKIERIVDKISYIVIFAVLIGLLVYTYLDTF
>NZ_CP047143.1|WP_065989317.1|169984_170308_-|hypothetical-protein
MNVYISLGLTYAFFILICFVLPFKLGNLLHSEWQYESFRDKSTWELFKIVYIKDTLKLLAIGLPVLTILLLWLNLVKLWFGWKLGLTTLMVIIVGAVIMINKKTKQK
>NZ_CP047143.1|WP_065989319.1|169577_169949_+|hypothetical-protein
MSPIEIEYQRDLNKAIALFYPENQDKPETVTLTKQDLATLYYNVKDAYDASKGKITRPTFDIVNGVSPKKALEKSDTVLISSKLYQGFKELEVKKYKLEHENKLLKHELHLLKGRLALMKNKQ
>NZ_CP047143.1|WP_065989321.1|165925_169372_-|hypothetical-protein
MSNFFGGLFDKKNKNEKPVKKPDLDKDKKDESIPDGLGGSKLAAQWIKEDEQNEKASSPAKPSEEKKADKADTADKKSEEKTATKPEAEKKNDDSKKNSSKTEEKVKASTDDKKSEEKRVSVRDETDLKTVKNDTRPKDPTKPIIVRFVYKGKKIRNDFIFTDELGTHLKLSDLPAVPGYKLDLKTNFNYKISHVEQTVVLHYHKDQVKYNLVPVLEDKTPIDKTKVRHFEGLPDDEISASKYPQIKGYRPYTRRKYTVPQDGGDVEVAYTKTKQTITIIFQTEKGEVLGTDKKHGLTGEDYKIDVRKRHFPGYELAKLPNNLSGKFPAENMQLEVICAPVESSITVTYVDEKGKEIHARASYSNPYKTPYTIKLPTIDGYELTSNPSILNGYYDKVPKNIVLHYKRATQTFTIRYWFDKDFKHSAGEDSKVSGLVGDPFDFPIPEKEGYTADTKEVKGKFSAFAEMNKDVDVIYTKIPCEVHVTLVDEADRPIPNQDSIVKKGNWGDLFEIELPEIAGFKRPFKVLKKRFDRAQQAELVHYTAQEVSLTIHYIDTKTKKEIDGYPAKFKPGLANTVYSVEPEMIDGYRLTKLPDNASGVYTAKPINVDLMYEPNPSEIVVHRNAIGLETIVPVQVLTGYFGKPYKIEQDVPGYKFVSSSEKLKGTFPASRLDVYLSYESADVSFTLVPVDQFGKEIDSEQNIKIVGKAGQEFSQLLPIIPGYVSTASEISGQIKAKYQGEKIEVPYKPKDEIITVHTIYSGGSNNGQHPFQDFSQPGPVGSTFEYEVPEITGYEPSTKKLVAKFEPEPQELTIVYSVKRENYNIQFVDGKGQLVGGMPAGTGYYNEPVNVESSVPRGFHLQDGVDSNIYLDGSNTYRVLVIADRLTVELIAQTKNGMDLGSRRQVDGDYNEVKTYDALPVPGYTPVAGDKVQVKFDLNATTFPIIYEPEERTITINYINASTGKAIGPKKKIIKKHFNEQYDISADPIPGYVAINRTRENGTIGLQNIEMTFIYRGSSDYLNNAATDIEQVIKNDEALRQRNVQSVVRPAQRPVVDVPPYSENEDVPTAKTASFYEEPVAEPEEQPTIPSARTVENTNFDNSSVSDTSASVDNTQTDNTQTGMPRGIDLVDKLYGPGMSRKNEDNRQ
>NZ_CP047143.1|WP_065989323.1|165611_165911_-|hypothetical-protein
MQKSIIIGGDVYSIASLCRKYNFSYKKASCLYSQGYRGEELLNKLKEDQIIIDGQVFKSKLQAAKHFGISPTTFYRYEKKGEIDKLIKRKKLLDKFDLN
>NZ_CP047143.1|WP_065989325.1|164052_165258_-|C40-family-peptidase
MPFKLPIIGGILFFLLIVIIIVVFAGGAISEEKGNGSCSDDASDSSVSIKGAAGAWTQKGTKAYNTAKAIFMYLVNKEGFSGAGAAGAVANANRESGFNPKAQNPGGGVVGLFQWSGWGNKVNGDRIHSGGIIKGESDLTVSKELALLHYELNHGYSRAKSAVGKATSPVKAADSWSLVYEGVSLADPQTKPDQIHADAEKAYRMFGGSKYKAKSILGHGSKAASDASSDQSGDNSCDDDDAIGTGGPLLSQAKKLLGYFTYGAHGVSGYGSWKHPNKNGQTDCSGFVWLAMKRAGYNVGNDAFTTLPMEQDAKGPHKFLKQIKAKDAKPGDVIIMNIGDGSGPKGHTAIIAGKYKGYQTKIIEMGGDNHDHVHTSNIEYSFYSLIHGGARITWARPVKKK
>NZ_CP047143.1|WP_065989303.1|174329_175700_+|replication-initiation-protein
MTENSQDSNSQDSNTTKEKKNLSLQVKMSNDVNNQDIFRTIDTFTEFENNFFYACLAQVYEQHDTEITFSSLQMKRLIGYSSHISMNAFVDKITRAFKKYEAITQDVDGIDPKGNPYREVHTLFRVGRVYTNDLTVHIQVDKPFINLFNDLEEWTRFSLLQYTRLHTKYIKRLYRVLKQYRTTGWKRYTLEEFREALMIPKSYESTDINKRILNPAMEDLASIFQDIKVVKLYQKGKRGRRLGGYEFKWKPEARNRKDFRNNEILQDSAAIYYIRTNPNLKTKQKFRAIDRYRGLKLGTTESNYKNSHPKSYFLDDNGKERQKRYMFSSSHLEGANRYSAKQLQELVNLYESFNKRGILKEADMYDLKQLERLLLAKKTEEVKKGQISDNPPKDTILYKTLDLTGADNFAQLDEFEKIHGKHMVDAAIDENIQDQFGEDKRKEDNRPVENKFFDNL
>NZ_CP047143.1|WP_065989369.1|175858_177019_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLKGIKLRLYPNKLQQDQLWQMFGNDRFVWNQMLAMMNERYKNNKKLPFLSKFKLDCLLKPLKQEYPFLKKSDSSSLQVVNASLNQAWKNFFSDKTGKVAKPRFHSRKYLKYSYTGKSVVQVIGKRYLKMPKLGYIKTSKTNILKDTKIKRYTVVLEPTGKYYLSLQVEAKTVEKFKQTGRRVGIDVGVADLAILSNGLKYPSFDSSYYEKKATNWQRRYSRRRHLTKLLCLQDKNRKALNPRSLDSFSNWQKAQRAKAVYQAKIAFQRKDYLHKLTTHLVKQYDVIVIEDLKVKNLQKNHHLAKAIANASWSMFRQMLEYKCQWYGKKLIAVDPKNTSRICSKCGYNSGEKPLDIREWTCPKCQAHHDRDINAAINILNKAKPVL
>NZ_CP047143.1|WP_081307100.1|177382_178528_-|DNA-entry-nuclease
MKSYNFNIKKSTVKLAKKLLPLISVVGVAVSLTGCSSSLTKTNQSSADKNQLVSKSSNDIGGLSKKEYQKLSNSIFKANTYGYFDVNNGISTLNPKSWKTNEVIYQNLDNLNRTSGSNTGFLEKRNLAKGSLRVRQTVAPTGWHYNHGGDQIYNRGHLIAYSVSAGIDQDGNYNPKNQSGDQNNPKNLFTQSAYSNQQLQTIYETKVRNALKANKKVIYQATPIFKGNEKMARGVNLQAISTDGSLNFNVFIFNVQPGYKFNYANGRAKKDSSVVVKALPAALQSHYINYSGKRYRNNYRNNYRNNQRNIYHSRNSDGYDTYHFNKDDTERQAQKDEQRFIHRQYNETKDAAKKNIHKAVNEVDNWWQHHKNKYNYHHYHR
>NZ_CP047143.1|WP_065989302.1|178827_179136_+|hypothetical-protein
MNIESKEVIFELESSLREFTAPEVELLLLHCYYANSEKQLTKSRAAEKKKEYDLYKKSFTQESILKVKNVYNSFHERFHDFYGVVYNYAHKSDDYKRLLMLI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP047143_1	1.1\|17588\|41\|NZ_CP047143\|CRISPRCasFinder	17588-17628	41	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	17588-17628	1.0
NZ_CP047143_1	1.2\|17654\|41\|NZ_CP047143\|CRISPRCasFinder	17654-17694	41	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	17654-17694	1.0
NZ_CP047143_1	1.3\|17720\|41\|NZ_CP047143\|CRISPRCasFinder	17720-17760	41	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	17720-17760	1.0
NZ_CP047143_1	1.4\|17786\|41\|NZ_CP047143\|CRISPRCasFinder	17786-17826	41	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	17786-17826	1.0
NZ_CP047143_1	1.5\|17852\|41\|NZ_CP047143\|CRISPRCasFinder	17852-17892	41	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	17852-17892	1.0
NZ_CP047143_2	2.1\|173302\|53\|NZ_CP047143\|CRISPRCasFinder	173302-173354	53	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	173302-173354	1.0

1. spacer 1.1|17588|41|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acttataaaacattaaaatcaatttgatttccatccgcatc	CRISPR spacer
acttataaaacattaaaatcaatttgatttccatccgcatc	Protospacer
*****************************************

2. spacer 1.2|17654|41|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acttgtaaaacctgaaatataatcttcccagttgaatccat	CRISPR spacer
acttgtaaaacctgaaatataatcttcccagttgaatccat	Protospacer
*****************************************

3. spacer 1.3|17720|41|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acttgtaaaactagatcaaaataacattaatactcagccag	CRISPR spacer
acttgtaaaactagatcaaaataacattaatactcagccag	Protospacer
*****************************************

4. spacer 1.4|17786|41|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acttgtaaaacttttcatcattaatccacctttcagattag	CRISPR spacer
acttgtaaaacttttcatcattaatccacctttcagattag	Protospacer
*****************************************

5. spacer 1.5|17852|41|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

acttataaaacaacatgtgtagcttctcctttgatgtattc	CRISPR spacer
acttataaaacaacatgtgtagcttctcctttgatgtattc	Protospacer
*****************************************

6. spacer 2.1|173302|53|NZ_CP047143|CRISPRCasFinder matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcgtatatttgaaagcggtattcaacttaagggacaccatcggatatttaaag	CRISPR spacer
gcgtatatttgaaagcggtattcaacttaagggacaccatcggatatttaaag	Protospacer
*****************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047142_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_1

278844-278929

Orphan

Consensus_repeat	Method
GGTAGATAGAAACATGACGATGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047142_1

>merge|NZ_CP047142|1|278844-278929|CRISPRCasFinder
GGTAGATAGAAACATGACGATGTTTTTCTGGCTCTTTGTCAAACACCCTAAAGTATAAGGGTAGATAGAAACATGACGATGTTTTT

>NZ_CP047142|1|1|278844-278929|CRISPRCasFinder
GGTAGATAGAAACATGACGATGTTTTT	CTGGCTCTTTGTCAAACACCCTAAAGTATAAG
GGTAGATAGAAACATGACGATGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_065989807.1\|273158_274709_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP047142.1\|WP_065989815.1\|269586_270399_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP047142.1\|WP_065990126.1\|301541_302453_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP047142.1\|WP_065990119.1\|305132_306332_+\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238233
NZ_CP047142.1\|WP_065989811.1\|271841_272420_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP047142.1\|WP_065989803.1\|279326_280418_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP047142.1\|WP_065989813.1\|270548_271835_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP047142.1\|WP_161903461.1\|281042_284384_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223039
NZ_CP047142.1\|WP_065990128.1\|300870_301197_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP047142.1\|WP_065989817.1\|268075_269500_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP047142.1\|WP_065989805.1\|276296_278678_+\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|367400
NZ_CP047142.1\|WP_005725365.1\|266132_267428_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP047142.1\|WP_065989809.1\|272688_272970_-\|HTH-domain-containing-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990123.1\|302720_304007_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP047142.1\|WP_065989800.1\|284681_285818_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP047142.1\|WP_065990121.1\|304471_304987_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_141685542.1\|301205_301499_+\|DUF2992-family-protein	unknown	unknown	gnl\|CDD\|378596
NZ_CP047142.1\|WP_081307124.1\|274897_274990_-\|putative-holin-like-toxin	unknown	unknown	unknown
NZ_CP047142.1\|WP_065989801.1\|280573_280900_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273973
NZ_CP047142.1\|WP_065989819.1\|267496_268021_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_065989807.1\|273158_274709_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP047142.1\|WP_065990126.1\|301541_302453_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	4.15736e-61
NZ_CP047142.1\|WP_065990119.1\|305132_306332_+\|chloride-channel-protein	gnl\|CDD\|238233	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function.	3.64884e-38
NZ_CP047142.1\|WP_065989811.1\|271841_272420_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	2.02791e-118
NZ_CP047142.1\|WP_065989817.1\|268075_269500_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	0
NZ_CP047142.1\|WP_065989815.1\|269586_270399_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.01702e-25
NZ_CP047142.1\|WP_065989805.1\|276296_278678_+\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|367400	pfam03217, SLAP, SLAP domain. This short domain is found in a variety of bacterial cell surface proteins. The domain is about 60 residues in length (although previously defined as 2 copies of this domain). It usually occurs in tandem pairs. It may be distantly related to the SH3 domain.	2.10335e-11
NZ_CP047142.1\|WP_065990128.1\|300870_301197_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00289432
NZ_CP047142.1\|WP_065989803.1\|279326_280418_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.68639e-55
NZ_CP047142.1\|WP_161903461.1\|281042_284384_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	2.63163e-12
NZ_CP047142.1\|WP_005725365.1\|266132_267428_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP047142.1\|WP_065989813.1\|270548_271835_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	0
NZ_CP047142.1\|WP_065990123.1\|302720_304007_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	3.05979e-13
NZ_CP047142.1\|WP_065989800.1\|284681_285818_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.63024e-57
NZ_CP047142.1\|WP_141685542.1\|301205_301499_+\|DUF2992-family-protein	gnl\|CDD\|378596	pfam11208, DUF2992, Protein of unknown function (DUF2992). This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologs of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesize nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches.	8.43392e-26
NZ_CP047142.1\|WP_065989801.1\|280573_280900_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273973	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae () and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (.	0.000247469
NZ_CP047142.1\|WP_065989819.1\|267496_268021_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00144619

>NZ_CP047142.1|WP_065989805.1|276296_278678_+|YSIRK-type-signal-peptide-containing-protein
MSNKNRQEIQNRFSLRKLTIGLASVSLGMFFMQTSNQVKADTLSTTPATNRANVTTVQTVQPGQPGQPVQPVQPGQPGQNGQNGQTDQTTPTPTSTSRDNSTGHSSQNLVTRPTTLALFKQITPAPSTPAPSTTVPSYDGTKVVSTPFYNNPGGTNSNLIDNQSKTGQYTFYFTAKDASGKEYASSYAAEKGNPTGVVLNSILDKDAGAYDPNSLEFHFYYQNNTDQDQTINYTLRMADYLNPYKAGRPESSLVPDGSRISDVKVTSKQGNTYDISSVTKTLDGVKSRDGDLRYVGDVPVNLTVKANDAINLVIPFVLNTTAKKSNTTIDDHNEFSVRENGQQTGYLVVRSSTYAPLFSEHKIYPLVNVGNNNYTHDYPDNPGAFDLDPSVYLDNDFMDGFWDGRTGVYKASKPTNLNTVYNSYTYTFLLLDNYQKSLTKHGFTVAFSDGKPVPYYMYQLSKTGSKVVDKNGNPVQGETKGHPYFEVVPVILLNQDETYTTKTAPTAWDPSTMVNKVADPTNYRYWDQKTDSAVRKDNTAAQLTANDFTVTITKDGKVVKPDDNGKYDLSKPGTYTVTYSKDFNGTTISNSGQITVTPVKEPDKPSGNNNNNSNHNNNGNNDNKGGNNLDAIVPVNPSDNNSNTAPTDNDSKPTDETGEQANICSCQDTITKTLMHAAYLYDNQGVRIKKPFIKAYTAVVVAKTPVVINGIKYYKVPCKDEYIKSGNFDGTSRVLRHNAFVYNHKGKAVRIKGIKRLLKKWRLVRTYGAPFNINGHQMYRIAKNRYIKVKNFK
>NZ_CP047142.1|WP_081307124.1|274897_274990_-|putative-holin-like-toxin
MSVFEPISLMLLFGTFLLALLTYIDQHHKK
>NZ_CP047142.1|WP_065989807.1|273158_274709_+|glutamine-hydrolyzing-GMP-synthase
MAKNLDDFDKIIVLDFGSQYNQLITRRIRDFGIYSELLPHDLSIEKIKAMKPKGIVFSGGPNSVYDKDALKVDPEIFKLGIPILGICYGMQLMSYYLGGKVEPADNKEYGRANITVEDPDSALFKGLPSKQYVWMSHGDLVTEAPKGFEVTASSKNCPIAAIANPDKKFYGIQFHAEVRNSEYGLDILKHFAFDVCGAAANWTMNDFIDMKVDEIRKEVGDKKVILGLSGGVDSSVTATLLHKAIGDQLTAIFVDHGMLRKDEGNQVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDFLAQGTLYTDVIESGTNTAQTIKSHHNVGGLPKDMHFELIEPLRKLFKDEVRELGEKLGIPHDLVWRQPFPGPGLGIRVLGEVTEDKLKIVRESDAILREEIKRAGLQEKIWQYFTVLPGIRSVGVMGDGRTYDYTIGIRAVTSIDGMTADFAKIPWAVLGHISDRIVNEVDNVNRVVYDVTSKPPSTIEWE
>NZ_CP047142.1|WP_065989809.1|272688_272970_-|HTH-domain-containing-protein
MKLFQNERTINHEIRSKIAALHKKNHLFQEALAEKMNVSRQAVSNRCVLLCQKQYHYGQLQHFITLLRKTWSQDYEQIRHTLLVNSSLTLSRI
>NZ_CP047142.1|WP_065989811.1|271841_272420_-|xanthine-phosphoribosyltransferase
MKELVDRIKQDGEVLPGNVLKINSFLNHQVDPQLMMHVGEEFARLFKDEKVDKVLTCEASGIAPGVMAAYQLHVPMIFARKKKPSTLNDAVYWADVFSYTKKVTNKICVEEKFLHKGEHILIIDDFVAHGEAVKGMVNIAKQAGCDIVGVGAVVAKTFQGGSEWVEKEGLRFEALAKIDSFENGQVHFEGEE
>NZ_CP047142.1|WP_065989813.1|270548_271835_-|purine-permease
MAQKEVSHKKAAVLGLQHLLAMYSGAVAVPLLIGTALHFNSTQMTYLVSIDIFMCGLATLIQLFRNKYFGIGLPVVLGCAIQAVAPLEMIGQKFSINTMYGAIIVAGIFVFLIASWFSKIKKLFPPVVTGTLITVIGLTLIPVAFQNMGGGNAQAKDFGDAKNLIAAFITILIIIAIEVWTKGFLRSISVLIGLIVGTLIASCMGLVSLKPVAEASWFHLPQFFYFGVPEFEWSSCLTMIIIALVSLVESTGVFFAIGDLLHQDITEEDLKKGYRAEGLAQIFGGLFNTFPYTTFSQNVGLLQLSGIKTKRPIYWAAGLLMAMGLLPKIGALVTIIPDSVLGGAMLVMFTMIAVQGIKMLTKVDFENNRNILIVAISIGMGLGVTVYPQIFQDLPQTIQLFLGNGIVVASICATLLNLLFNGRSGANK
>NZ_CP047142.1|WP_065989815.1|269586_270399_-|AraC-family-transcriptional-regulator
MPNLNNQNLESYIMFYGRQKCQPDEFFQGDNLRKNDIFYYIISGTGSFTSSRHHAVKLKAGDLFYVPRNQTCSFQADHDEPWEYFWIGLAGNGVNESIKASNLPNKNFLRQIQKTAFYQTLDDLYQCLAKKKTLLNNLQISALTYQLFYHLVKDFPNHPPVRKTPKNDQYQIAINYLNQNYSDPTCNIVELCHRLGVSRSFLYALFRKNTKLSPQKYLMQLRMEAAKKELINTKHNLRQVAQKVGYGDEFTFSKAFKRYSGVSPNAFRGN
>NZ_CP047142.1|WP_065989817.1|268075_269500_-|C69-family-dipeptidase
MKQTECTTILVGKKATIDGSTMIARSEDGGRVIIPEGFKAVNPADQPKHYTSVISKQKIDDADLAETPLRYTSAPDVSGKNGIWGAAGINADNVAMTATETITTNSRIQGVDPLLDPSEGGLGEEDFVTLTLPYLHSAFDGVKRVGYLVEKYGTYEMNGMAFSDKDNIWYLETIGGHHWIARRIPDDAYVIAPNRLNIDTFDFNDSDNFACSADLKDLIEEYHLNPDREGYNMRHIFGSSTIKDAHYNNPRAWYIHNYFDPDFGGTPADQDQPFICHANRLISIEDIKWAESSHYQDTPYDAYGDQGTPEQKKTFRPIGINRNFETHILQIRNDVPAEIAGVQWLAFGPNTFNSMVPFYTNVTTTPEAWQTTPKFNLSKIFWLNKLTAQLGDTNYRVYGELEDAFEQKSLAQCHKIQHDTDKEVANLSGKELQDKLIAANQKMSDTVYNNTVELLGQMVDEGHGLMTLKYDLLD
>NZ_CP047142.1|WP_065989819.1|267496_268021_+|GNAT-family-N-acetyltransferase
MSLIFTRRAQNSDVDKIVQILQDAISFLKESGSSQWQSGYPNRETVEEDIEKQVAWVLTVDNEVAGYAAVVIGKDPNYAKIDGEWNNDVDSYATIHRIAVASQFRGMHLTQLFLSNIISLTYAQGIHNFRIDTSRKNKIVQHIAVSHNFIERGIIQVTEDPVDSSRIAYELNLR
>NZ_CP047142.1|WP_005725365.1|266132_267428_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MKQMIIHGGKPLQGDVWIGGAKNSTVALIPASILSRTPVTLEGVPRIADVVNLMDLLSEMDVHCDFGETTLRIDPTDIKMSPLPAGKIKSLRASYYFMGALLGRFGKAVVGFPGGDDIGPRPIDQHIKGFEALGASVKNENDQIIITAPEDGLHGAKIHLKMPSVGATMNIIMASVTAQGQTIIENAAKEPEIIDLATFLNNMGAVIRGAGTDSIRIEGVEQLKAQIPHTIIPDRIEAGTYVALAACIGNGIRIHNIIEEHLDSYLAKVEEMGVVIDSDEDSLYVYPAGDLKMVQVKTDVYPGFATDLQQPITPLLLTAKSGEGVVIDNIYPKRIGHIAQLQKMGANIKVEDNIILAHPTKQFHGAEVTAGEIRAGACLMIAGLMADGTTTIDKAGNILRGYDRVQEKLRQLGADVTIKDDPAVPGILDNI
>NZ_CP047142.1|WP_065989803.1|279326_280418_+|IS30-family-transposase
MKKNAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCHQRSGRPRLYYRSKRFLQLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRSQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTRVHDHVFYTDPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHRPIINWSVLFISA
>NZ_CP047142.1|WP_065989801.1|280573_280900_+|LPXTG-cell-wall-anchor-domain-containing-protein
MITGHQFERREIKGADGRLTEVIFYYLKTTNGGEITPSVQPVQPVGPSQPAQPTAPSQSTSTPSGQGTPTARQELPQTGNQTSETSVLGLTLLGVLGLLGLSKRKRKE
>NZ_CP047142.1|WP_161903461.1|281042_284384_+|LysM-peptidoglycan-binding-domain-containing-protein
MEHKYQMIADRLYRVKLVKKGNHWIAIGLTAFTLGLGLTTIDAASLLPWRATTPAEIAPRIAPTDQTYTFRAGDTLWALAQVLGIDYHTLMEWNGLHEGDQYHIPVGTVVKIRGNHVTMTTPDGRKLIDRNLPPQVWRTQIGTTNAILWPQVSSGRSSEPIGTFGGLGTAATPLDQGSQPTTKGDKPTVSVTPGGEVPATSDSSTASETPTSGTDTPVTSGDNPTTSATPGGEAPATSDSSTASETPTSETDTPATSGDNPTTSATLGGEAPATSDSGVAGETPTSGTDTPVTSGDNPTTSATPGGETPATSSSASAGETPTSETDTPATSGDNPTTSATPGGEVPATSDSGSVGETPTSGTETPATSDDNPTTSATPGGEAPATSDSTSASETPTSGTETPATSGDNPTTSATPGGEAPATSDSTSASETPTSGTDTPATSGDNPTSGSGASGEQPQSIDEVKPTPRPQPKIDLQPLQRRLLTGQSVMTTAAYYNADAAKQLAYRTALAAASQLQYDPQVTAEQMQAAIAQIDAAQAALDGQATDFNVATILLKRYDQREQDPRYHNATTTAQAPYDEAVAALQKLMTTPAVTQAMLDAAVAQVEATQAKLDGAILSPAEQAKVDAINEFKATVAYYQTALQYVSPEYRQAAEGILQAYGINVLPNLKTYTTQGIQDNQASLKRWMDLYIQSSAQQMQGRRDLEAAVIALQNLVATRLTLYNEINRVNDFIKGAQAMLADPDQAYQYESQAATLQEVLTSAEAAQAAADKLIADNNVRRQEALEQLMAEQVPGTSTYVQYADEHYKLTTTLKKVVERAELVNATLPYQGSVYEGAPLDPEYLQYRTVGDYLQVGTPAYDQLVATVDRLKGQLQAELEAGRGGQDAINGDVTKAIRTVPTDADVAALKPLLNLADAYSQRMLKTVNLMRFAIGEHPLELAPLNDKRKAMLAVHALAEYQAGLMPQFAGYSHLGSIAVLLAPHTMTAGYNENTYPSGNPPVISQHLTPEYLADMESRLVLMEGIKYFEGFFTDKEAKSGHFTTIIDMDHQYFYGVPIIGTMDQVGNGFTKYRISSTGLFYQVADDNYKWWLRHFDSWPKVNPDTDLDKTDFSNL
>NZ_CP047142.1|WP_065989800.1|284681_285818_+|IS30-family-transposase
MTHLNDTMLTNLLATHRKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCHQRSGRPRLYYRSKRFLQLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRSQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGGAINDYSSAQIIATNNWMNHYPRAIFNGRSAMDVYCKAFYQEMSRSHQPIINWSVLFISA
>NZ_CP047142.1|WP_065990128.1|300870_301197_-|helix-turn-helix-transcriptional-regulator
MNLREVNDKAGLGRNSIYNWKNQRPGIDALNTVADVLHTSADYLSGKTDNPSPSPKGDETGGISIDGEVPYFYHGYTIPEDYLNIVRQLMERDIKKGLIKRHDNSRSE
>NZ_CP047142.1|WP_141685542.1|301205_301499_+|DUF2992-family-protein
MPEILTLVNFYYSKLHFYQTTAEKEKVYHVNPKRAQRLAHKATQKKAIGTKAQQALKKQFEQSKIAKKKVNRNRKREEQEKRFLQKQAKRREKHRGH
>NZ_CP047142.1|WP_065990126.1|301541_302453_-|prenyltransferase
MKKYSTLQKFKALVQIQTIIISALPYIIGSVMASYYYHNFNLVYSLWLFLAVICFHLAVNGHNQYTDYTRYKQNHITSYNNILEKFNITKSWARKIIIILTLISAIIGITLSIKVGWIILLIGILSYLIGYCYSGGPYPILKTPFGEPASGITMGYNITFLGLYINMYNVHPFDNFFWAKAIIVAGPAIFVIANVMLANNICDVAEDVKIGRKTLPYYTGRKTALTILCGYYVLAYIFLILGIVLKYLPVITLGSLLTIPLVYHTTKTFVKNPHKESTFTGILVNVLLVLISEIIFSLVGLAI
>NZ_CP047142.1|WP_065990123.1|302720_304007_+|Fic-family-protein
MVKGYHLLDKEKYMHKPQMVTQEEINQIYQERLNGVSSFKTNLYPLLTDKNGTQTNHYPIFFVYLPEIVKLESDLRDNSNKIKELSKNLPGIAKQQFLNSLLVSEIAYTNRIEGVETDRGEISTIIRENEENSQRPFHKRLQSTIRMYQETQSDHLIKIEQLKDFRDIYNTLLEGEIDSDKLPNGKLFRDELPEGERLRIGDALHTVHIPPQTEKDINEALSSLIEFMNDDELPSIYKSLITHFFFENTHPFLDGNGRMGRYLLSTYISHKYDHFTGFSIATAIHSRVQTYYRIFKEADKTENYAELTLFILEMLKILVAQQEEIVTTLTDDKQQLEEIKANISQQIKDIDGSYDKVAFYAILLYLGESKLFASNKELAILDRDIIQLNSKENSISIRRTKMALDKLEKLGWIRKINSRPKQHEIILK
>NZ_CP047142.1|WP_065990121.1|304471_304987_-|hypothetical-protein
MKSANYTRKHHMYLMNHKNGDVIEVRMDNKNKTFKKIRLYRQDGLGNYYLDPHAEFKDQKSPATKENIVEAGKKVSDHISSAENWHHKVRPIFNAEHKIVDFEPRLHLEHHTKIQNAKRYLRHLERRHADFIFRKNSKTPLLIPWNYIKDMIYEDRNKEMVLAHKVHKLRK
>NZ_CP047142.1|WP_065990119.1|305132_306332_+|chloride-channel-protein
MKELNIFYYATIWSFIIGICCATYLNLINFIINFVWHVLFDKLPVPSQALPFFICIPFGFIIGILIKRLGSYPLTIEEVLMSVKQQGKINYHNWWKSLTLGLISLAAGGSIGPEASTTVLGSGMVNWLGDRLRLIAYSSDWKWNHFWDTIVSKKQLKKLPKFSSLFKSKLHQKVFCLIMVMIGVVGAAIVFKLFPEEGLFGIHHRHILWQWHYSMYVIIPLIVGWSFGMFFLWSEKWSDYFAEKITISPIIKATIWGIVLALLTLITSYALYSGEFQIVPFVHQALQISPLFLLVIAVIKTLSTNIGFSLGWRGGKIFPSIFASVAVGAAIAQFLPIMPVMCVAITVSASIAVILGKPLLTAILLILLLPIELAPVILVSAYLAACLTKVSYSFRQKNN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047142_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_2

880478-881664

Orphan

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACGTATGTGGAGGTGATCCT	PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CRT
GTATTCTCCACGTATGTGGAGGTGATCC	PILER-CR

19 spacers

The CRISPR arrays of NZ_CP047142_2

>merge|NZ_CP047142|2|880478-881664|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCCTACACATACGCTTATAAGATGGGACGGTTCTAAGTATTCTCCACGTATGTGGAGGTGATCCCGATTCAGAACGTTGCAATAATCGTGCAGGTGCGTATTCTCCACGTATGTGGAGGTGATCCTGCTTGCATATTGTGGAAAACTTCAAAGCGTGAGTATTCTCCACGTATGTGGAGGTGATCCTTCCATTTGCTCACTACTTCGACCAATTGCAAAGTATTCTCCACGTATGTGGAGGTGATCCTAGGCTCGGCTATTTCTAAAGGTGCCAAATCAAGTATTCTCCACGTATGTGGAGGTGATCCTAATCTATGTATTTCGTAAGTGTGATGAAAACAGTATTCTCCACGTATGTGGAGGTGATCCTAGCTTTTGTGTTTATTGTCGTTGGAGCAGCTGGTATTCTCCACGTATGTGGAGGTGATCCCTTTCAGCAATTAAGCGGATTTATCCGCAGGATGTATTCTCCACGTATGTGGAGGTGATCCTTCGTTGAGCTTGAGAGTTGGCATCGTTTTCCGGTATTCTCCACGTATGTGGAGGTGATCCTGTTCCCATTACTTTCTCCTTTAAAAATTGCTAGTATTCTCCACGTATGTGGAGGTGATCCCAACTTCTCTAAAATTGCTTGACAACTTACAGCGTATTCTCCACGTATGTGGAGGTGATCCTAGCTCGGAAAAACGACAAGCTTAAAGGCAAAGGTATTCTCCACGTATGTGGAGGTGATCCTAAAAATATTTTTCTGCTGTGCTGTTTCACATGGTATTCTCCACGTATGTGGAGGTGATCCCTTGTCAATTGGCGTAGTTGCTTCATCGTAACGGTATTCTCCACGTATGTGGAGGTGATCCTATTATTGGTCAACAGTATACCAGTAATGGACAGTATTCTCCACGTATGTGGAGGTGATCCTGTTGTTTACGATTTCCAACAGTTCATTAATCAGTATTCTCCACGTATGTGGAGGTGATCCTTATTGACGTTGACGAAAAGACAGAAAAGAAATGTATTCTCCACGTATGTGGAGGTGATCCTAATGAGGCAAAAGCTAAAAAGCATTTTTCCTTGTATTCTCCACGTATGTGGAGGTGATCCCATAAAAAACGATGTCGGGAACTGCAAAGAAGAGTATTCTCCACGTACGTGGAGGCATCTT

>NZ_CP047142|2|1|880478-880811|PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCCT	ACACATACGCTTATAAGATGGGACGGTTCTAA
GTATTCTCCACGTATGTGGAGGTGATCCC	GATTCAGAACGTTGCAATAATCGTGCAGGTGC
GTATTCTCCACGTATGTGGAGGTGATCCT	GCTTGCATATTGTGGAAAACTTCAAAGCGTGA
GTATTCTCCACGTATGTGGAGGTGATCCT	TCCATTTGCTCACTACTTCGACCAATTGCAAA
GTATTCTCCACGTATGTGGAGGTGATCCT	AGGCTCGGCTATTTCTAAAGGTGCCAAATCAA
GTATTCTCCACGTATGTGGAGGTGATCCTAATCTATGTATTTCGTAAGTGTGATGAAAACAGTATTCTCCACGTATGTGGAGGTGATCCTAGCTTTTGTGTTTATTGTCGTTGGAGCAGCTGGTATTCTCCACGTATGTGGAGGTGATCC	CTTTCAGCAATTAAGCGGATTTATCCGCAGGAT
GTATTCTCCACGTATGTGGAGGTGATCC	TTCGTTGAGCTTGAGAGTTGGCATCGTTTTCCG
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTCCCATTACTTTCTCCTTTAAAAATTGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTTCTCTAAAATTGCTTGACAACTTACAGC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTCGGAAAAACGACAAGCTTAAAGGCAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTTTTCTGCTGTGCTGTTTCACATG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTGTCAATTGGCGTAGTTGCTTCATCGTAACG
GTATTCTCCACGTATGTGGAGGTGATCC	TATTATTGGTCAACAGTATACCAGTAATGGACA
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTGTTTACGATTTCCAACAGTTCATTAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TTATTGACGTTGACGAAAAGACAGAAAAGAAAT
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGAGGCAAAAGCTAAAAAGCATTTTTCCTT


>NZ_CP047142|2|2|880478-881664|CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	TACACATACGCTTATAAGATGGGACGGTTCTAA
GTATTCTCCACGTATGTGGAGGTGATCC	CGATTCAGAACGTTGCAATAATCGTGCAGGTGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGCTTGCATATTGTGGAAAACTTCAAAGCGTGA
GTATTCTCCACGTATGTGGAGGTGATCC	TTCCATTTGCTCACTACTTCGACCAATTGCAAA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGGCTCGGCTATTTCTAAAGGTGCCAAATCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TAATCTATGTATTTCGTAAGTGTGATGAAAACA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTTTTGTGTTTATTGTCGTTGGAGCAGCTG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTTCAGCAATTAAGCGGATTTATCCGCAGGAT
GTATTCTCCACGTATGTGGAGGTGATCC	TTCGTTGAGCTTGAGAGTTGGCATCGTTTTCCG
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTCCCATTACTTTCTCCTTTAAAAATTGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTTCTCTAAAATTGCTTGACAACTTACAGC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTCGGAAAAACGACAAGCTTAAAGGCAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTTTTCTGCTGTGCTGTTTCACATG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTGTCAATTGGCGTAGTTGCTTCATCGTAACG
GTATTCTCCACGTATGTGGAGGTGATCC	TATTATTGGTCAACAGTATACCAGTAATGGACA
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTGTTTACGATTTCCAACAGTTCATTAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TTATTGACGTTGACGAAAAGACAGAAAAGAAAT
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGAGGCAAAAGCTAAAAAGCATTTTTCCTT
GTATTCTCCACGTATGTGGAGGTGATCC	CATAAAAAACGATGTCGGGAACTGCAAAGAAGA
GTATTCTCCACGTACGTGGAGGCATCTT

>NZ_CP047142|2|1|880478-881664|CRT
GTATTCTCCACGTATGTGGAGGTGATCC	TACACATACGCTTATAAGATGGGACGGTTCTAA
GTATTCTCCACGTATGTGGAGGTGATCC	CGATTCAGAACGTTGCAATAATCGTGCAGGTGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGCTTGCATATTGTGGAAAACTTCAAAGCGTGA
GTATTCTCCACGTATGTGGAGGTGATCC	TTCCATTTGCTCACTACTTCGACCAATTGCAAA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGGCTCGGCTATTTCTAAAGGTGCCAAATCAA
GTATTCTCCACGTATGTGGAGGTGATCC	TAATCTATGTATTTCGTAAGTGTGATGAAAACA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTTTTGTGTTTATTGTCGTTGGAGCAGCTG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTTCAGCAATTAAGCGGATTTATCCGCAGGAT
GTATTCTCCACGTATGTGGAGGTGATCC	TTCGTTGAGCTTGAGAGTTGGCATCGTTTTCCG
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTCCCATTACTTTCTCCTTTAAAAATTGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTTCTCTAAAATTGCTTGACAACTTACAGC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTCGGAAAAACGACAAGCTTAAAGGCAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTTTTCTGCTGTGCTGTTTCACATG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTGTCAATTGGCGTAGTTGCTTCATCGTAACG
GTATTCTCCACGTATGTGGAGGTGATCC	TATTATTGGTCAACAGTATACCAGTAATGGACA
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTGTTTACGATTTCCAACAGTTCATTAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TTATTGACGTTGACGAAAAGACAGAAAAGAAAT
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGAGGCAAAAGCTAAAAAGCATTTTTCCTT
GTATTCTCCACGTATGTGGAGGTGATCC	CATAAAAAACGATGTCGGGAACTGCAAAGAAGA
GTATTCTCCACGTACGTGGAGGCATCTT

>NZ_CP047142|2|2|880905-881603|PILER-CR
	ACACATACGCTTATAAGATGGGACGGTTCTAA
GTATTCTCCACGTATGTGGAGGTGATCCC	GATTCAGAACGTTGCAATAATCGTGCAGGTGC
GTATTCTCCACGTATGTGGAGGTGATCCT	GCTTGCATATTGTGGAAAACTTCAAAGCGTGA
GTATTCTCCACGTATGTGGAGGTGATCCT	TCCATTTGCTCACTACTTCGACCAATTGCAAA
GTATTCTCCACGTATGTGGAGGTGATCCT	AGGCTCGGCTATTTCTAAAGGTGCCAAATCAA
GTATTCTCCACGTATGTGGAGGTGATCCTAATCTATGTATTTCGTAAGTGTGATGAAAACAGTATTCTCCACGTATGTGGAGGTGATCCTAGCTTTTGTGTTTATTGTCGTTGGAGCAGCTGGTATTCTCCACGTATGTGGAGGTGATCC	CTTTCAGCAATTAAGCGGATTTATCCGCAGGAT
GTATTCTCCACGTATGTGGAGGTGATCC	TTCGTTGAGCTTGAGAGTTGGCATCGTTTTCCG
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTCCCATTACTTTCTCCTTTAAAAATTGCTA
GTATTCTCCACGTATGTGGAGGTGATCC	CAACTTCTCTAAAATTGCTTGACAACTTACAGC
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTCGGAAAAACGACAAGCTTAAAGGCAAAG
GTATTCTCCACGTATGTGGAGGTGATCC	TAAAAATATTTTTCTGCTGTGCTGTTTCACATG
GTATTCTCCACGTATGTGGAGGTGATCC	CTTGTCAATTGGCGTAGTTGCTTCATCGTAACG
GTATTCTCCACGTATGTGGAGGTGATCC	TATTATTGGTCAACAGTATACCAGTAATGGACA
GTATTCTCCACGTATGTGGAGGTGATCC	TGTTGTTTACGATTTCCAACAGTTCATTAATCA
GTATTCTCCACGTATGTGGAGGTGATCC	TTATTGACGTTGACGAAAAGACAGAAAAGAAAT
GTATTCTCCACGTATGTGGAGGTGATCC	TAATGAGGCAAAAGCTAAAAAGCATTTTTCCTT
GTATTCTCCACGTATGTGGAGGTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_065989771.1\|873552_875391_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP047142.1\|WP_081307120.1\|893451_894069_+\|LysR-family-transcriptional-regulator-substrate-binding-protein	unknown	unknown	gnl\|CDD\|176102
NZ_CP047142.1\|WP_005719232.1\|894158_894707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065989791.1\|894802_895465_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP047142.1\|WP_065989789.1\|892118_893285_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226925
NZ_CP047142.1\|WP_065989795.1\|881953_883273_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
NZ_CP047142.1\|WP_065989793.1\|872983_873445_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239520
NZ_CP047142.1\|WP_065989769.1\|871779_872931_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653
NZ_CP047142.1\|WP_013086488.1\|869843_871697_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP047142.1\|WP_065989788.1\|885727_888001_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319771
NZ_CP047142.1\|WP_057726507.1\|875392_876076_+\|class-A-sortase	unknown	unknown	gnl\|CDD\|320680
NZ_CP047142.1\|WP_005723104.1\|888129_888978_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047142.1\|WP_065989773.1\|876196_878470_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP047142.1\|WP_081307118.1\|879184_879916_-\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173875
NZ_CP047142.1\|WP_065989786.1\|883317_884409_-\|DUF871-domain-containing-protein	unknown	unknown	gnl\|CDD\|377567
NZ_CP047142.1\|WP_005719257.1\|869242_869827_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237631
NZ_CP047142.1\|WP_013086469.1\|891466_892003_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|377135
NZ_CP047142.1\|WP_081307119.1\|890292_891453_+\|peptide-transporter	unknown	unknown	gnl\|CDD\|179366
NZ_CP047142.1\|WP_065989784.1\|879983_880289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065989775.1\|878574_879102_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_065989771.1\|873552_875391_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP047142.1\|WP_081307120.1\|893451_894069_+\|LysR-family-transcriptional-regulator-substrate-binding-protein	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.63693e-10
NZ_CP047142.1\|WP_065989791.1\|894802_895465_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.77154e-05
NZ_CP047142.1\|WP_065989789.1\|892118_893285_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226925	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only].	5.88828e-44
NZ_CP047142.1\|WP_065989795.1\|881953_883273_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	6.00396e-173
NZ_CP047142.1\|WP_065989793.1\|872983_873445_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239520	cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.	2.10037e-36
NZ_CP047142.1\|WP_065989769.1\|871779_872931_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0
NZ_CP047142.1\|WP_013086488.1\|869843_871697_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP047142.1\|WP_065989788.1\|885727_888001_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319771	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases. This subfamily includes eukaryotic plasma membrane H(+)-ATPase which transports H(+) from the cytosol to the extracellular space, thus energizing the plasma membrane for the uptake of ions and nutrients, and is expressed in plants and fungi. This H(+)-ATPase consists of four domains: a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. This subfamily also includes the putative P-type H(+)-ATPase, MJ1226p of the anaerobic hyperthermophilic archaea Methanococcus jannaschii. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP047142.1\|WP_057726507.1\|875392_876076_+\|class-A-sortase	gnl\|CDD\|320680	cd06165, Sortase_A, Sortase domain found in class A sortases. Class A sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They perform a housekeeping role in the cell as members of this group are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall-sorting signal (Class A sortases recognize a canonical LPXTG motif, X can be any amino acid), and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical sortase A protein from Staphylococcus aureus (named Sa-SrtA) cleaves the amide bond between threonine and glycine residues of the canonical LPXTG motif in a wide range of protein substrates with diverse functions that can promote bacterial adhesion, nutrient acquisition, host cell invasion, and immune evasion. Next, it catalyzes a transpeptidation reaction by which the proteins are covalently linked to the peptidoglycan precursor lipid II. SrtA is therefore affects the ability of a pathogen to establish successful infection. SrtA contains an N-terminal hydrophobic segment, a linker region and an extra-cellular C-terminal catalytic domain. The hydrophobic segment functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring. The catalytic domain contains the catalytic TLXTC signature sequence where X is usually a valine, isoleucine or a threonine. The gene encoding SrtA is generally not located in the same gene cluster as its substrates while the gene encoding SrtB is usually clustered in the same locus as its substrate.	4.99529e-56
NZ_CP047142.1\|WP_005723104.1\|888129_888978_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.03442e-49
NZ_CP047142.1\|WP_065989773.1\|876196_878470_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.32123e-172
NZ_CP047142.1\|WP_081307118.1\|879184_879916_-\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173875	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains. This family represents the substrate binding domain of an ATP-binding cassette (ABC)-type oligopeptide import system from Lactococcus lactis and other gram-positive bacteria, as well as its closet homologs from gram-negative bacteria. Oligopeptide-binding protein (OppA) from Lactococcus lactis can bind peptides of length from 4 to at least 35 residues without sequence preference. The oligopeptide import system OppABCDEF is consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.68397e-107
NZ_CP047142.1\|WP_065989786.1\|883317_884409_-\|DUF871-domain-containing-protein	gnl\|CDD\|377567	pfam05913, DUF871, Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.	4.00074e-174
NZ_CP047142.1\|WP_005719257.1\|869242_869827_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237631	PRK14162, PRK14162, heat shock protein GrpE; Provisional.	3.28285e-90
NZ_CP047142.1\|WP_013086469.1\|891466_892003_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|377135	pfam03802, CitX, Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.	1.22099e-67
NZ_CP047142.1\|WP_081307119.1\|890292_891453_+\|peptide-transporter	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	1.26114e-85
NZ_CP047142.1\|WP_065989775.1\|878574_879102_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	5.64594e-96

>NZ_CP047142.1|WP_065989784.1|879983_880289_+|hypothetical-protein
MSDKKFDQAVFYLMDNLNLLKQSLSADMDYSQLFEKMRKLNKKIKGISKPFHYMPKKTRTINQGRRAINAIISNIIGADCKKNYKICKMNKSFRCILKLSY
>NZ_CP047142.1|WP_081307118.1|879184_879916_-|peptide-ABC-transporter-substrate-binding-protein
MNNLALRRAMLSAMNIDMINHRFYHDLNFRVDTLIPEQYGKFHDGSIPGYPYNLKKAKQLLDQAGHKYQKGAKFRSQPNGKPLTINLAVRASSPNAESIWSNYIQQWKKIGLNVRFLGGRPMEFNSWVQAVKATDPRIDVLEGAWGLEDASPNSLYGQSSQLNFARFASKTNNKLLNDIDSQKAFDPNYRVQAFKKWQRWMHDQAYFAPISNSSELTAVNANVTGWSVKYNSNVWYDAGFVKK
>NZ_CP047142.1|WP_065989775.1|878574_879102_+|adenine-phosphoribosyltransferase
MAVDFSKYIASVQDFPNKGIVFRDITPILQDGELYRAATHELAEYAKSKKADIIVGPEARGFIVGCPVATELGLGFVPARKPHKLPREVERASYDLEYGSNSLEMHKDAIKPGQRVVLCDDLMATAGTLRASKELIENLGGKLVGAAFYIELPDLHGREKLPDVDIYSLVKYHGA
>NZ_CP047142.1|WP_065989773.1|876196_878470_+|single-stranded-DNA-specific-exonuclease-RecJ
MKWQERTAQELAPDLVEKYQLSPIAATLFALRGINTDEKLDFWFNATEDNLADPALMHDMDKAIERINQAIDNGEKITIYGDYDADGITATTIMTETLSILGADVHYFIPDRFKDGYGPNLARYQDIVADGTKLIITVDNGVTGIEEVKYAQEHSVDVILTDHHTFQEEKPAAYATVHCNYPGQKYPFDDYCGAGVAYTICRGLMQDTMPELLDLAMIGTIGDMVKVTGEGHIIVKRGLEMLNQTERPGLRALIKNAGLTLGGINETDVGFNIAPRLNAVGRLDNANLAVELLLSDDDLEAQKIADRIEELNNQRKELTTQVYEKCMDLIQKNSWQKQNTLVLYDPEFHEGVLGLVANKIVEKTHKPTIVLTKNAAGEVKGSGRSFAGFNLFDALNPIKDQYLTKFGGHDFACGLSLEENQIAPLREKFEDDFHVEGGLETKKYDMELPMQGLTPQTLAQINQVGPFGTGDTQPIFSISNPTITHFFKMGKYKNHIKFTVAKKGGNLSVVGFNKGFLNNNLLPFISQIFVQLSLNTYRNQVSLQGIMTGLAFASPKLVVPTPVVDLRQEKYVMGFADRYLLFDQKNIPIVRNRLQIDEDKISLVKDYDQTGETVALLDVPRNQIELNAALEKDYQQIYLRFLLDQLPVEQIPAKNYFGAVLKYIYSHPTLKPADYRTVAPYLGLDYDSVLFILRVFFELGFVKLDEGKLVGEPSPKKQPLTASKYLMGTSSQIKFVNQLRTMPSQRLITYINNLSNN
>NZ_CP047142.1|WP_057726507.1|875392_876076_+|class-A-sortase
MAKKKTNISRIILRVLGIILLIVGVALIFNKQISNQMIRHNQQSTLNGLNKSKVTENLRKKGMYDFSKVKSLGIAQATRSQVKKTSGAIGALAIPDVNMSLPIMLGMSDDAMSTGGGTMRADQVMGKGNYPLAGHYMTAKGILFSPLEDVKRGELIYLTNLNKVYVYRIYMKKIVDPTAVWLVDNTKKNIVTLITCADGGKNRWAIRGNLIKTEKATDNNLKIFKLK
>NZ_CP047142.1|WP_065989771.1|873552_875391_+|elongation-factor-4
MDLEKLKDYQKHIRNFAIVAHIDHGKSTIADRILELTDTVSQRQLKNQMLDDMPLERQRGITIKMNSVEVKYHAEDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALMVVDASQGVQAQTLANTYLAIDDDLAILPVINKIDLPSADVPKTKEEIEEMLGLDASEAAEVSGKTGQGIKDMLEKVVKDIPAPAGDIEAPLKALIFDSKYDDYRGVVMSVKIEDGMVKAGDRIQIMNTGKEYEVTEVGVSSPHPIKKDVLIAGDVGYITANIKSVRETRVGDTITQADNPTAEALPGYRQIPPMVYSGMYPVDNRDYEDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVVQERLEQEFDLDLIMTAPSVDYHAIMNDGTTKVIDNPSDLPDAGEYKEVQEPYVKAEIMVPNDFVGPVMELCQRKRGEFVTMDYLDKYRVNVIYNMPLAEIIFDFFDDLKSSTKGYASLDYEITGYRATDLVKIDILLNKEPIDALSFIAHRSEAQDRARQMTSMLKKLIPRQNFEVDIQGAIGAKIISRATIKPYRKDVTWKIHTGDPDRRAKLLEKQKRGKKRMKAVGRVEVPQDAFMAVLKMNDDDIKGK
>NZ_CP047142.1|WP_065989793.1|872983_873445_-|NUDIX-domain-containing-protein
MITEKSAGAIIWRKQKSQLEYLMIQSQPYKQFPSAWGFTKGHLEGTESNEDAAQREVYEEVGLNPKFDFTFHQVDTYHLTKNRQKEVTFFLAEFIEGQQIKLQESEIRQSAWLSYDEAQKCLAAQNYKEFSYKELQLILKKSKQLSSKQNKIK
>NZ_CP047142.1|WP_065989769.1|871779_872931_+|molecular-chaperone-DnaJ
MAQEDYYKVLGVDRDASDQEISRAYRKLAKKYHPDLNHEPGAEEKYKQVNEAYEVLHDKQKRAQYDQFGSAGVNGQGGFGGGAGQGFGGAGFDTSGFGDFGDIFGDIFGQGRQQRVDPTAPQRGQDLDYQLTIDFMDAIKGKKTQVSYTRSETCETCGGNGCEKGTHPITCDKCHGTGYMTITQQSMLGMIRRQTTCDKCHGRGVIIEHPCKTCGGKGTVDRKNTIEVDIPAGIDNGQQLRYQGQGEAGINGGPYGDLYINYRIKPSKDFERRGQTIYTEVPISFAQATLGDEINVNTVHGDVKLTIPAGTQPNKKFTLRGQGVPYLRGNGNGDQITTVNIVIPKHINDKQKKDLTNFVHDGGGNITPQEKGFFERLKDKFNM
>NZ_CP047142.1|WP_013086488.1|869843_871697_+|molecular-chaperone-DnaK
MSKVIGIDLGTTNSAVAVLEGKEPKIITNPEGNRTTPSVVAFKDGEIQVGEVAKRQAITNPNTIVSIKRHMGEADYKVKVGDKEYTPQEISAFILQYIKKFSEDYLGEEVKDAVITVPAYFNDAQRQATKDAGKIAGLNVQRIINEPTASALAFGLNKDQDEKVLVYDLGGGTFDVSVLQLGDGVFQVLSTNGDTHLGGDDFDHRIMDWLIKNFKDENGVDLSKDKMAMQRLKDAAEKAKKDLSGVSSTHISLPFISAGEAGPLHLEADLTRAKFDELTADLVEKTKVPFDNALKDAGLTVNDIDKVILNGGSTRIPAVQKAVKEWAGKEPDHSINPDEAVAMGAAIQGGVISGDVKDIVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFSTAADNQPAVDVHVLQGERPMAADDKTLGRFELTDIPPAPRGVPQIQVTFDIDKNGIVNVSAKDMGTGKEQKITIKSSSGLSDEEIKRMQKDAEEHADEDKKRKEEADLRNEVDQLIFTTDKTLKDTKDKLSDSDRKPVEDALEALKKAQKDNNLDEMKEKKDALSKAAQDLAVKLYQQNGGAAGQAGPQAGPQGPQGGNSNNGNNGDAQDGEFHKVDPNK
>NZ_CP047142.1|WP_005719257.1|869242_869827_+|nucleotide-exchange-factor-GrpE
MSKEEFPSEKNLEQKEKTSEPKAKKEADKGEEKKQEKNKQDQKLAKELADLKDKNKDLEDKYLRSEAEIQNMQNRYTKERAQLIKYESQSLAKDILPAMDNLERALSVEADDDVSKQLKKGVQMTLDALVKAMKDHGVVEIEADGVKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMVVVAQ
>NZ_CP047142.1|WP_065989795.1|881953_883273_+|FAD-dependent-oxidoreductase
MKTVKNIIIGFGKGGKTLAKFLAKKGEEVLVIEKSNQMYGGTCINIACLPSKRLIIEAGNGVDFVDAVNGKNKMTSMLRGKNYHMLADEKTVTVLDGTAKFTGDHEVAVTLTNGQVEEYRGERIFINTGTVPVMLPIPGLAESSAILDSTAAMAQAELPKKLVIIGAGYIGLEFASMFAEYGSEVTVLDLHDNFLPREDDDIAAEIKRDLELNGVKFELGVRITKVDDHTIYYEKNGESLTITADRILVATGRKPNTENLGLKNTKIKLTERGAIVVDDYLKTNVKNVWAIGDVKGGLQFTYISLDDFRIIKDQLYGDAQRKVSDRINVPYSVFITPALSRVGLNEKEAKAQKVEYELKKLPVAAIPKAQVLKDPRGLFKALINPANNQILGVTLYGAESYELINQISLAMKMKIPAHVLRDQIYTHPTMSESFNDLFK
>NZ_CP047142.1|WP_065989786.1|883317_884409_-|DUF871-domain-containing-protein
MTMRSLGLSIYPDHTNFEDNTKYLELGHKYGFTRIFMSMLEVQGSPEETPAKYKKIIDYGNKLGYQTFLDVSPQLFKKLEIDYSDLKFFADIGAAGIRLDEAFDGATEAMLSYNPYGLIIELNMSNNADYLNNILSYQANQPFIYGCHNFYPQRGTALPYDFFLDCSTRFKNLGIHSAAFVSSQVGKVGPWNVEDGLPTLEEDRDLPIEVKAMHLFASNMIDDVIIGNAYASEAELKALSEVNRYQLKLHVNYVSDINEIEKTIVEKPQHFRRGDLTKAVIRSTMPRVTYKDIPNPIHDNEVEFQRGDVIIGNDNFGHYKNELQIVLEPHKEPRMNKVGSISSDELFLLDFIKPWSKFKLTSK
>NZ_CP047142.1|WP_065989788.1|885727_888001_-|HAD-IC-family-P-type-ATPase
MSDKFHGLTQAEADKRLKEDGLNEVPEPEYNFFKEFLSKLWNLSAWILEAALILECILGKWVQSLFVLLMLLFAAFNGASKKKQSRRVLNNISHKLTPTVSVERDGKWIKLDSKQLVKGDLISLKRGDVLAADVKIVDGNLACDESSITGESKPVKKAIDDTAFAGTTVVEGDGLAVVTATGKDSRSGKTINLINNSAAPGHLQQLLTKIIYYLCLLDGVLTLVIIIASFFKGGNFNTFINMLPFLAMMFIASIPVAMPSTFALSNSFEATRLSKEGVLTSDLTGIQDAANLNLLLLDKTGTITENKTAVAAWTDLSDLPDKDVLALAGAATDKRNAGIIDTAIDEYLVENNIPVMNAKNFTPFTSDTGYSMADVAGHNVKLGSFKQLSLIDKHADEEISGINFKAGRSVAVLIDDKLAGVFILQDKVRTDSKAALAELKKRGVRPIMLTGDNQKTAAAVAEQVDLTGEVISIHDFNENTDINDLAGIADVLPEDKLKMVKLFQEKGYIVGMTGDGVNDAPALKQAEVGIAVSNAADVAKRSGKMVLLDDGLGSIVKILDAGHRVYQRMTTWSLTKLARTAELTMLLTFGYLFFDYIPMALNAMVIYTIMNNMVTMMIGTDRTHITYKPENWNMAKLAKIAFSLAAGWTLIGIGFVWFLNTHGWSHGAVSTMVYVYLVLSAMLIVLITRTRKYFWQDYPSKLVGSVQIVDVLLTFILALCGWAMVQISIQNLAITVLVALIAAVVIDLVYQPVMKNR
>NZ_CP047142.1|WP_005723104.1|888129_888978_+|LysR-family-transcriptional-regulator
MNLKQLRYFLVVAEEKQITAAAKRLYIAQPPLSYQLKQLEKELGAQLFKRTAHGIELTDVGQIFQSYANEIISLAQNAENQVHKTISGELGTIAIGMASSSTGLIPMNSFNELRKYYPEISFDIYEDNTYGILDKLEKKTIDLGIVRTPYNQTGLNTKTLTTEKMMAISVDPDFQQKKELRIKDLADQPLIIYRRFEDIFNQTFAHHGLKPFYAVKCDDSRTAITWAKRKMGVALVPESIATTYAQENMIAIKHANWITHLQLVWRKDHQVTPLMKKIIAAI
>NZ_CP047142.1|WP_081307119.1|890292_891453_+|peptide-transporter
MKYLQNVFQGRSFLDCKDYTPAEISYLIDFALHLKELKKEHIPHEYLKGKNIALLFEKASTMTRSAFVVACNDLGAHPEYLGASEIHLGKKESVKDTAKVLGSMLGVNVHIVTPKPLFTHPDVQKIAQNFAQDSGSKNLITDDIAQGVKGANVVYTDVWVSMGENDWSERIKLLKPYTVTMKMMQMTGTPDDQLIFMHCLPAFHDRTTQVGEEIYEKYGLNEMEVTDEVFNSKYAWQFTEAENRLHSIKAVMAATLGNLFIPIACGGGGIPVIVKDGHLRGVAGVIDKDFSAAKMAEDINADELVILTTVDHAFLNYGKENQQAIGKIKVEQLKQYLVAGYFAAGSMKPKIEAAIEFVEKTGNLAIITSLSNANKLADGVGTIVYN
>NZ_CP047142.1|WP_013086469.1|891466_892003_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MNIFNEGKKQDIAQVLAAKDRRVAVQHKIFNKYPNQTLVDIKMNIPGPIKNNRYLTKMFMFGINELENAWTNLGYHFKLVTQLNDDSGCENFYVLSLSIEKVKRSTIDFEDQTSLGRLFDADVLVKNKQAAISRRDLGRQPRKCFLCDRPAKECARSRRHSVEQMQAFISQLYQEYVA
>NZ_CP047142.1|WP_065989789.1|892118_893285_+|GNAT-family-N-acetyltransferase
MKLKKNKNNLKQITALIQYAFLKNNDLTKDENFMSRYDHSTGYGYFDKEKLASYIMVNRFKSDVFGHHLPMAGIGYVASYPEYRGQGHISQLMKEILHDLHRQDIPFANLAPFSESFYRQYGFSNSIYQKEYRFDGSALRSFKLPRSGHIVRGKWDNLAVQNGVIQLYERQLHTNDERNTVVREAWWWNRLDSYYHHRNVAVYFDADERPISYLIYRIRDNTFLADEMYAITPQGLLSMFGFMGSHAGSVKQFKMSVPEKSLRAELFPEQNELQVDLRPYMMSRIIDFEKVLACMRPMQEGDFNLEVNSDEQCPWNIGVWQLSNHGRKVAVERKEDALVDFSGSITAWTQVLLGRLTMNAAVKLGLITDYRIKKLDFVKGDVSFYDYF
>NZ_CP047142.1|WP_081307120.1|893451_894069_+|LysR-family-transcriptional-regulator-substrate-binding-protein
MKNKMTELKIAYFDQLGRKELDQAVQHFVLKHPNVDVKLLATSHDGAFAKLNEDEADIAINDLRDENLNFDETELTQAGVMAILPKGMYPNGIQMIEKDELNDMTCFIVAKPEEEVSELYLFKDLYQIGSQFIASNSVEEAVLLVASGSGYFILNENTARLINTADLQPLFLLDHGQLIKQKIMAFYKSNSALSSEFIKLLQQEY
>NZ_CP047142.1|WP_005719232.1|894158_894707_+|hypothetical-protein
MIFMLKRTLLPLTSMVLVLGLTGLASQVETVDASTYGNGVQVTIPKKMQGTWYSYDRNAHNGTKITFTEHTVNGKPIFTQEASTISDYFNGRIANQKNFDKVTQNWMSGKTTKMKNDTFYEIDPWITFENWSLYRVVPQTINGKKHNVLVYSSRYDGGNYFRSKKLAKKMKDYKFKKVNYTL
>NZ_CP047142.1|WP_065989791.1|894802_895465_+|antibiotic-biosynthesis-monooxygenase
MKLKQTPILRLYKLETNKEDHAKFVKAGQHNMLTSQENEPGTLFMQTSHNEETTNFVVECYQDEASYDTHANSKQFKDFTDVAKDILTSRVKVELFPEFISTKAEKLAVTGSNDYVIYLTEIGVSLGKGDEFAHAVMKEMKTAVEEEKDILAMIAGTVADQPNEWLAIEVYRNNEAYKQHLETKNFKEYLKNTKYCVESKSLRKLQPDVIVDQGAIFYQP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047142_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_3

916555-916887

Orphan

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACACATGTGGAGGTGATCC	PILER-CR
GTATTCTCCACACATGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACACATGTGGAGGTGATCC	CRT

5 spacers

The CRISPR arrays of NZ_CP047142_3

>merge|NZ_CP047142|3|916555-916887|PILER-CR,CRISPRCasFinder,CRT
GTATTCTCCACACATGTGGAGGTGATCCCTCAGCACCGTGAGTGATTCCGCCATTTCCGTAGTATTCTCCACACATGTGGAGGTGATCCCTAAAACTGCAGCCAGAAAATGGGAACGTGACGGTATTCTCCACACATGTGGAGGTGATCCTGCAAGTGACCTAAACAATAAGGCTGATAAATCGTATTCTCCACACATGTGGAGGTGATCCTTACCGGCTGCATCTACTACTTTTTCACCTTTCGTATTCTCCACACATGTGAAGGTGATCCTAGAAGACAAGCGAATGTGGAAGTAGGCAACAAGTATTCTCCACACATGTGGAGGCTAAAT

>NZ_CP047142|3|3|916555-916826|PILER-CR
GTATTCTCCACACATGTGGAGGTGATCC	CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA
GTATTCTCCACACATGTGGAGGTGATCC	CTAAAACTGCAGCCAGAAAATGGGAACGTGACG
GTATTCTCCACACATGTGGAGGTGATCC	TGCAAGTGACCTAAACAATAAGGCTGATAAATC
GTATTCTCCACACATGTGGAGGTGATCC	TTACCGGCTGCATCTACTACTTTTTCACCTTTC
GTATTCTCCACACATGTGAAGGTGATCC

>NZ_CP047142|3|3|916555-916887|CRISPRCasFinder
GTATTCTCCACACATGTGGAGGTGATCC	CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA
GTATTCTCCACACATGTGGAGGTGATCC	CTAAAACTGCAGCCAGAAAATGGGAACGTGACG
GTATTCTCCACACATGTGGAGGTGATCC	TGCAAGTGACCTAAACAATAAGGCTGATAAATC
GTATTCTCCACACATGTGGAGGTGATCC	TTACCGGCTGCATCTACTACTTTTTCACCTTTC
GTATTCTCCACACATGTGAAGGTGATCC	TAGAAGACAAGCGAATGTGGAAGTAGGCAACAA
GTATTCTCCACACATGTGGAGGCTAAAT

>NZ_CP047142|3|2|916555-916887|CRT
GTATTCTCCACACATGTGGAGGTGATCC	CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA
GTATTCTCCACACATGTGGAGGTGATCC	CTAAAACTGCAGCCAGAAAATGGGAACGTGACG
GTATTCTCCACACATGTGGAGGTGATCC	TGCAAGTGACCTAAACAATAAGGCTGATAAATC
GTATTCTCCACACATGTGGAGGTGATCC	TTACCGGCTGCATCTACTACTTTTTCACCTTTC
GTATTCTCCACACATGTGAAGGTGATCC	TAGAAGACAAGCGAATGTGGAAGTAGGCAACAA
GTATTCTCCACACATGTGGAGGCTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_061204764.1\|909909_911400_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP047142.1\|WP_061204763.1\|912762_913626_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP047142.1\|WP_065991153.1\|904154_905192_-\|IS1595-like-element-ISSag10-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP047142.1\|WP_061204761.1\|914473_915352_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP047142.1\|WP_078009238.1\|925403_925631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990557.1\|913652_914300_-\|temperature-sensitive-replication-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990572.1\|925614_927270_+\|ATPase	unknown	unknown	gnl\|CDD\|378384
NZ_CP047142.1\|WP_065990554.1\|907871_908432_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP047142.1\|WP_065990555.1\|911511_912747_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP047142.1\|WP_065990562.1\|921549_922689_-\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NZ_CP047142.1\|WP_065990633.1\|924196_925414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990558.1\|917922_918489_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NZ_CP047142.1\|WP_005719132.1\|918559_919183_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP047142.1\|WP_054833014.1\|908522_909890_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP047142.1\|WP_065990564.1\|922685_923021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990560.1\|920996_921572_-\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NZ_CP047142.1\|WP_065990553.1\|905383_907699_-\|phospholipase	unknown	unknown	gnl\|CDD\|197216
NZ_CP047142.1\|WP_065990632.1\|923004_923208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_081307146.1\|915660_916407_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990566.1\|923306_923825_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_061204764.1\|909909_911400_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP047142.1\|WP_061204763.1\|912762_913626_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	7.44437e-109
NZ_CP047142.1\|WP_065991153.1\|904154_905192_-\|IS1595-like-element-ISSag10-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.81445e-16
NZ_CP047142.1\|WP_061204761.1\|914473_915352_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.42387e-61
NZ_CP047142.1\|WP_065990562.1\|921549_922689_-\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	3.95944e-176
NZ_CP047142.1\|WP_065990554.1\|907871_908432_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.2833e-27
NZ_CP047142.1\|WP_065990572.1\|925614_927270_+\|ATPase	gnl\|CDD\|378384	pfam10088, DUF2326, Uncharacterized protein conserved in bacteria (DUF2326). This domain, found in various hypothetical bacterial proteins, has no known function.	4.27394e-11
NZ_CP047142.1\|WP_065990558.1\|917922_918489_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.09694e-98
NZ_CP047142.1\|WP_005719132.1\|918559_919183_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.51871e-12
NZ_CP047142.1\|WP_054833014.1\|908522_909890_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP047142.1\|WP_065990560.1\|920996_921572_-\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	4.97422e-92
NZ_CP047142.1\|WP_065990553.1\|905383_907699_-\|phospholipase	gnl\|CDD\|197216	cd09117, PLDc_Bfil_DEXD_like, Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, and uncharacterized proteins with a DEAD domain. Catalytic domain of type II restriction endonucleases BfiI and NgoFVII, uncharacterized type III restriction endonuclease Res subunit, and uncharacterized DNA/RNA helicase superfamily II members. Proteins in this family are found mainly in prokaryotes. They contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in a single polypeptide chain, and have been classified as members of the phospholipase D (PLD, EC 3.1.4.4) superfamily. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. BfiI forms a functionally active homodimer which has two DNA-binding surfaces located at the C-terminal domains but only one active site, located at the dimer interface between the two N-terminal catalytic domains that contain the two HKD motifs from both subunits. BfiI utilizes a single active site to cut both DNA strands, which represents a novel mechanism for the scission of double-stranded DNA. It uses a histidine residue from the HKD motif in one subunit as the nucleophile for the cleavage of the target phosphodiester bond in both of the anti-parallel DNA strands, while the symmetrically-related histidine residue from the HKD motif of the opposite subunit acts as the proton donor/acceptor during both strand-scission events.	5.60993e-07
NZ_CP047142.1\|WP_065990555.1\|911511_912747_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	9.21102e-165
NZ_CP047142.1\|WP_065990566.1\|923306_923825_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.34606e-06

>NZ_CP047142.1|WP_081307146.1|915660_916407_+|hypothetical-protein
MEKDMFTKQEFKPQGYKENVERLKLFYHSEFYQDLKKLYSNYLNKVEDALYQDPDSSDEFLYIALGEKYKLDVSKKNNSFCLIDKVGNSEIALGADAICGVKCLAKYYPDLDDWIDAYETIRSQTSLHFVWPRHKLPTINTLRYIKYLDRIDFTLFDLKNYFEGNKNTPLARAYKNEVTNLWLSQFYDFPSFVKKMQLGRFVDKKYNVLNIASRQNEIIKKFPAKSELSNSMPIYADSLISLVKDNII
>NZ_CP047142.1|WP_061204761.1|914473_915352_+|YitT-family-protein
MDQLDKFNRRYNFLSKLSAAFFYSIAVAVALNFFWTPGHMYSSGITGFAQLINTVSERYLPFTLSTSMMYFLLNFPLFILAWFKIGHKFTFFTIVAVVLGSIMMHAIQLWQMHLDPLVCAIFGASINGVGTGMALKNGISTGGLDIIGIVIRQKTGISYGKFNIFINLIIIAAAGYMFGWTRALYSALTIFINGRVIDAVYTQHQKMQVMIVTQHPQHIIDGIQNRMHRGITILHDAEGAYSHIEKTVLITIIDRYDMYDIRQIVQGADPYAFMSVSEVEKVYGRFKEQEIV
>NZ_CP047142.1|WP_065990557.1|913652_914300_-|temperature-sensitive-replication-protein
MSSYYELMWRNDELTSYTTDKLNFIYNAINHPLSVRYRQLYPNRLDWQKALNRHNAAIQKVKDLLIERKDSHNIREAWLKLHPNAQTKANNGFTVEQLANKFPYMAKQLGAFMEIENIEIKYFDEEFKPRYDLDDFSDIFSANYPASGFTQSGITQEALLKLYPNVSAKNLDQILKMADCEFEQENGTEVIPYWYAVNAKRMLVDGDSFAATFDD
>NZ_CP047142.1|WP_061204763.1|912762_913626_+|homoserine-kinase
MIIKAPASTANLGPGFDSLGMAVSLYLEVEVLSVADRFQVDHVMKGIPHDENNLIVKTALTVYPGLQPLHLRVKSNIPLAHGLGSSSSAIAAGIELANQIGKLGLSDEEKVQLGAKIEGHPDNIAPTILGGLVVGAEVNHHFDAVEAPLPPYALVAYVPDYNLETKTARAVLPKELAFGVATHGSAVANTLIASLFAQDYPKAGELMEQDVFHEVYREKLVPELVKVREVAHSKHALATYLSGAGSTIMTWIEDKHVAGFLSGLRKHDLKDETLILHPDEQGVQVIQ
>NZ_CP047142.1|WP_065990555.1|911511_912747_+|homoserine-dehydrogenase
MAIKIALLGLGTVGSGVLKIIKNNKKKIRQTSGEEIIIEKALVRNPEKHRNLANEVMLTTDFDSILQDPEIKIVVELIGGLHPAKEYITAAINAGKNVVTANKDLMATFGSELINLAASKKCDLMYDASVAGGIPILRTLATSYSSDIISEIQGIINGTTNYILSQMGEKGLSYEEALKNAQELGFAEADPTNDVTGKDAAYKIVILSKFAFGTKISIDDFTIQGINNLKDFDIKQAQKLGYVIKLVGIAKNINGKLFVEVAPCLLPENAIMAHIKNELNALQIKSQSLGTAVFTGPGAGSSATANSVMSDVITEIKNVVKKTTGQPFSNFSHVMQLTSSEDVKYSYYLSFEAEETLFDLSKLLSDLEIPVREIKQVQSRIVVVTENISRQQLQDLAIQDQYLKASYKILQ
>NZ_CP047142.1|WP_061204764.1|909909_911400_-|threonine-synthase
MQYRSTRGSKENTLTAPQAIIQGLAQDGGLYVPVAFPQANFKLEDLSKLSYKQIAAMVISLFFDDFTKEQITTAVQSAYSEQWDDRSIVPIEKHDNRFYMELFHGPTLAFKDIALQMLPQLMTRAVQIEKIAKDIIILTATSGDTGTASMRGFANQKGTDVIVFYPEGGVSPVQLKQMLSQRGNNLRAIAIKGNFDDAQTEVKKIFNDDSFKNRLNANGYQFSSANSMNIGRLVPQISYYLYTYGQLVRRQEIKLGDEVNFAVPTGNFGDILAGYYAKKLGLPIKKLICASNENNVLTDFFNNGVYDKRRKFHLTNAPAMDILVSSNLERLLFDLYDENNYEVASLMNQLTQRGHYQVSGEVFTKLQKNFAAGFATEEEVKSEIKRVYNYDRYVIDPHTAVGSFVANQYQKKTGDQTPMVIVSTASPYKFPETVYEAITGGPSMQTGVGAIKELHDELGGQLSIGVRALFDREPKTEKIIEPNDMEKEISSILDLK
>NZ_CP047142.1|WP_054833014.1|908522_909890_-|aspartate-kinase
MKVVKFGGSSLASGNSVDKALSIINADPERQVVVVSAPGKRTEDDIKVTDLMITYAYMSLRSNNYQDIATRIFKRYELIAQYFELPEAELEDIKQLLLTLPKLSYPNNDYRMATFKAHGERLNAILIAKILNHQGIKARFLEPKDVGLIVTGTSNNAEVNPETYVNLKRIKAAKDEKIIFPGFYGITPSGHIATFSRGGSDITGAILARGLNADLYENFTDVDAIFSANPHIVDQPKPIKRMTYQEMRELSYAGFSVFHDEALIPAIQGEIPVNVKNTNAPEKPGTMIVPEDGFIPKHTITGIAGGKNFAALYLRKYMLNKGAGFTLKLMEILQKHHVSYEHMPSGIDDITIIFKKDVLTDQLIDVICNEIQTSLNPDQMQWIDDYAITMVVGEGMKDKLTLCASLLYPLGKKNISIQMINQGASQISIMIGTRRQDEEVVIKTIYDNFIAQDKI
>NZ_CP047142.1|WP_065990554.1|907871_908432_+|histidine-phosphatase-family-protein
MTTVYFVRHAQPDLSVHDDLTRPLTEKGLQDRKKVTDYFRDKHIDQAFSSPFKRAIDTIQPVIDEKELTLSSISDFRERKIGDEWISNFHEYCERQWEDFDYKLRNGESLKETQKRNVVALKLVLSKYQDQTMIIGGHGTAIGSVINYYDPSFKYEAFAMIQPKNPFIVKMSFDGEKYLEYKVVTF
>NZ_CP047142.1|WP_065990553.1|905383_907699_-|phospholipase
MGLEILNHTDQKLISNADFWQLVDFQRESNKFSEFKGISFVSNIKFIEKNLLPRFDQITLILGLTDNGSNSIGKRIDQILNKRRDLIEYSYEHQDSTFTKRILDGSLQLFFTKQNLIHTKLYLMRNQSKYSVFSGSMNLTDAAVNKNMEQLVWDYGNTSDPLFNCYQQMFQDNLDQAATYIDAKKLSGYLKDKDKEELRIHVMQDSSLEIKNSPNSTGKDIIILPAEEIKKYRDHYSKDDELKKLSENEKLVASQTVTLFGEGGNKRRKLDTIGQDLYSLTQHIIRQDKKAKADTTQIEKEEDLFPVPVQFYNNGQLFQASKIGDNIPSEVITSDLTEEQLKNALQLFCDITHEYNTYKEVGEGWQACDFMLFLYESPWLWKIRNLYELSGSNVSREDVPIATALIGQGRTGKSTLGKRLAAKLIGAHNFLDSGMMDPKNYAFGKSNINMTITNTLSDYVYTNGPVSPLMIDDVSPELTTRTYFERFIKEVTNNRNLTHPSPAFIFTMNRQESSIKSQFSLKPEIMRRLWYLSFESTFSGESDQRNAALTSLFSRANDDLFKYCQVELAKFFTNVSVEDAQKIERDFLYPIKHVLKTALDKFDMYNQVSKYFEENYDYSLFVGRNDWGMLINQAKIGSDILFIKQDDRLKAQINKELFNKISDQTAKNSGSTMLDRYFKYLPRKYHIASQQTSTGFILDVENFDKWLDDDTLMNKYQNSSSFRDKQQRDNQAQLTQTVDMLAKAMLEDREQRRKEEAKKNHSWFGNLFHRN
>NZ_CP047142.1|WP_065991153.1|904154_905192_-|IS1595-like-element-ISSag10-family-transposase
MPTIKDALDIIGKLTVAEQESLKTMLLSPAFVKSLNIEDFVAKERFANGRVCPLCGCIHVVRNGHRKDGTQRYVCKDCGKSFVIATNSIVSGTRKDLSVWEQYIDCMMNGLSIRKTAVACGIHRNTAFLWRHKILDALQNMAYDVTLDGIIEADETFFAISYKGNHSKSKTFAMPRKAHKRGHSTHIRGLSQEKVCVPCAVNRNGLSISKITNTGRVSTRDLHHIYDGRIKTNSTLVTDKMNSYVRFTNANGIDLVQLKTGKAKKGIYNIQHINSYHSQLKRFMRGFNGVSTKYLNNYLVWNNLVNYAKESDMEKRNIFLTFVLATLKTAKCRDLSNRPAVPLVA
>NZ_CP047142.1|WP_065990558.1|917922_918489_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MTENNRQAEGTDIKAKANYDTAIFAGGCFWCMVEPFDTVDGVEKVVSGYTGGHVANPTYEQVCSGTTGHTEAVEITFDPAKISYDQLLNYYWQVTDPTDAMGQFQDRGDNYRPVIFYNSPAQKEAAEKSKQRLQASGKFDKPIVTKIEPAKPFYPAEEYHQDFYKKDPLRYAMEEAGGRAKFIKEHWD
>NZ_CP047142.1|WP_005719132.1|918559_919183_-|M23-family-metallopeptidase
MKFRKLIISLLGTALLTSSVGLSTTTASADTLDDSQNTTEVQPKNLKWAYPFKANKKNGVRPMYNAQTFGITNYMRSTTPPSYFHDGWDFGFSEVGHSNVYAIHQGTVKKVAYGNGLGWFIWVISPDNYVEVYQEGFNKKKDIYVKTGQKIKLGQKIGKLTGSHLHLGVTQTNKDYINKYGFPCKNWNVNNGTWLNPIEVIKSNLKK
>NZ_CP047142.1|WP_065990560.1|920996_921572_-|DUF2815-family-protein
MNLRRNHNMSQQTKVVTGINTRLSYANVWEPKSINGCKEKYSVSLIIPKSDQKTITAIEKAIDAAIQEGIGKFGGKKPNKATLKLPLRDGDVERDDAAYQDSYFINANSITAPQIVDKHVQPILNRDEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQKIRDGEPLGGHASASDDFTAIDDSSDDDFLA
>NZ_CP047142.1|WP_065990562.1|921549_922689_-|DUF2800-domain-containing-protein
MSSPKHHALLSASSANRWLSATPLPRLEQYFPHSTSSAAAEGTAAHALGEYKIHRLLGDQFKRPVSDYQSDEMESLTDDYASYALEQYQKAKRYAKDATISVEQKLDFSKYVPEGFGTGDCVIVSDHLLQIIDFKYGKGVRVEAKNNPQMKLYAIGALEIFGALYDIDEVETTIFQPRMANISTWTINAKQLIHWANTELKEKAELAFAGQGTVRYGPWCQFSACNAVLRARYDYHHKLTRFQLRSPNLLTDSEVTKVLERIDDLNRWAHEVKDYAGNLAINHGKQWPGYKIVEGRSVRHYKDEAAIAKIAEEHGYHDIYQRKLLPITKLEKQVGKKKFTELFSQEIVKPAGKPTLVPNSDRRQSIGKSNPKDEFKEES
>NZ_CP047142.1|WP_065990564.1|922685_923021_-|hypothetical-protein
MSAMNDLDLQLKEREEFYHRMAEEAVEGLKTIQTVRQQLFGSNNNQDVNEKPKHNPVQDKITIRQMLAKRCQEGYTDQVKELLHKFCADKLSDVNPKDYEDLYYSAEGIGQ
>NZ_CP047142.1|WP_065990632.1|923004_923208_-|hypothetical-protein
MVNKVSIKVTKHPYQEGIVSMRNITIRERLLQLLLGKPHHLMVISPGKDVQQLQINEVKEASHECNE
>NZ_CP047142.1|WP_065990566.1|923306_923825_-|sigma-70-family-RNA-polymerase-sigma-factor
MNFNNSEYELVDEQDDKLIVRVKHMGNQTVVVTKAEGNIIFDLDHQQYNSDHRNERHQDKFFKQDPSNPDMNMMDSLADRESIEVTSVYGKDNFLDKIVEKEDRQSRQMLAEQLPAALATLTGKQKYTVTQYYCQGIKKNQIAKMMGISKVMAGRHVKAAIKKLRQFYDIED
>NZ_CP047142.1|WP_065990633.1|924196_925414_+|hypothetical-protein
MEFSDFFDMLWTYLGSPDESKDNKGRPKFFCHLIDLIIRTPQTDVEDEKAQSGDLNPFTGRVADTINKYCIGSRPIPKKDAKELLSRISNGKKFVDEINFSAPGARESIRNKLREEQFEVTTSSLGEVCFKIMKAFLNKFKNGETSVKTNDVKTNQNFIDNLRLLHDVDIECPLCGESLIKNGISNAIAGYDVVHIFPDNLNEKEKAKFAKIKKAPENSDALENKIPLCLNCANVYLNNPTLNDYQRLIHKKQHIINEKRIAQGLNQLTLEVKLTKVIQGLKKVKPNLANSVVDYDAHTVEEKISHDYALQGAVSYYVSGYYNKIKDQFSNLEGPDFSFDELATTIRLAYFKFKREQLDQEEIFNHLADWIITKEQLPQDYSEASRIIVAFFVQNCEVFEVENAQ
>NZ_CP047142.1|WP_078009238.1|925403_925631_+|hypothetical-protein
MPSKVTDYKESTLASLPKIMKKLNEQAMNPQDLYKRTRRSFDDVGAFVEALDCLFILNRIRIDEETGVISSVKAN
>NZ_CP047142.1|WP_065990572.1|925614_927270_+|ATPase
MLKQISCDQFMMDGHPRGSIYFDKGLNVILGGHSGTNSIGKSTFLMIIDFVFGGTDYVKKDLDVQKNVGPHIIKFAFEFNDKNYYFSRSTEDFQYIYICNEKFIPKDNKRITVEEYLDFLSKQYNLDLPGLTFRGAVGRFIRVYNRQTTNEKRPLQNSNQEPAKQQVYGLLKLFDKYSPIENREEATKQAEEAYTTFKNAGTYRYVPIVDTKRQFNENLNKIEQLKQKLSDLQSENNEGSLNLDDMQAARLREIRNDLSQLREQKNTYLSRLNVIKSNEEVGPKRYRNNYHELEQFFPNVNIQRIEKIDKFHHQITKFLKLEFEREKYTIEKNVDDLNHHISQLVNEAQEIKNQQGPNVQTALLNEYADKKAELKQLEDENKNYQKKKKLQQDKKDQQDALKATINTELAEVQHSLNTEMASLNEQVCGSSSFKPPRIELKPTGYNFETINDQGTGTSFKGLIIFDQACLNLTGLPFFVHDSLLFSNIEIDRRNRIVEMYAQETKQIFISIDSIEVLSEKAQEIIRENTVLTLERGGKELFGRSWNEQATK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047142_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_4

919616-920069

Orphan

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACGTATGTGGAGGTGATCC	PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CRT

7 spacers

The CRISPR arrays of NZ_CP047142_4

>merge|NZ_CP047142|4|919616-920069|PILER-CR,CRISPRCasFinder,CRT
GTATTCTCCACGTATGTGGAGGTGATCCCTAACAATGCTCAAACGTTAAATTTGGTTGATAGTATTCTCCACGTATGTGGAGGTGATCCCAAAGTTCGTAGTAAATATGAACCTAACTACGTGTATTCTCCACGTATGTGGAGGTGATCCTTTAACTCATTCTGTGAGTAATAATATAGGCGAGTATTCTCCACGTATGTGGAGGTGATCCTAGCTTGCTTTGTAGCTTGTAACGTTTTTTCGCGTATTCTCCACGTATGTGGAGGTGATCCTGCACTTGGTCCTTGCGCCTTTAAATTGCGACTGTATTCTCCACGTATGTGGAGGTGATCCCACAAAATCCAGGTACTACTTTAATCCATGGAGTATTCTCCACACATGTGAAGGTGATCCTAACTGATTTAGTGGGTGCAGTTATGGATTGAGGTATTCTCCACACATGTTGAATCTGTTA

>NZ_CP047142|4|4|919616-919948|PILER-CR
GTATTCTCCACGTATGTGGAGGTGATCC	CTAACAATGCTCAAACGTTAAATTTGGTTGATA
GTATTCTCCACGTATGTGGAGGTGATCC	CAAAGTTCGTAGTAAATATGAACCTAACTACGT
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAACTCATTCTGTGAGTAATAATATAGGCGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGCACTTGGTCCTTGCGCCTTTAAATTGCGACT
GTATTCTCCACGTATGTGGAGGTGATCC

>NZ_CP047142|4|4|919616-920008|CRISPRCasFinder
GTATTCTCCACGTATGTGGAGGTGATCC	CTAACAATGCTCAAACGTTAAATTTGGTTGATA
GTATTCTCCACGTATGTGGAGGTGATCC	CAAAGTTCGTAGTAAATATGAACCTAACTACGT
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAACTCATTCTGTGAGTAATAATATAGGCGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGCACTTGGTCCTTGCGCCTTTAAATTGCGACT
GTATTCTCCACGTATGTGGAGGTGATCC	CACAAAATCCAGGTACTACTTTAATCCATGGA
GTATTCTCCACACATGTGAAGGTGATCC

>NZ_CP047142|4|3|919616-920069|CRT
GTATTCTCCACGTATGTGGAGGTGATCC	CTAACAATGCTCAAACGTTAAATTTGGTTGATA
GTATTCTCCACGTATGTGGAGGTGATCC	CAAAGTTCGTAGTAAATATGAACCTAACTACGT
GTATTCTCCACGTATGTGGAGGTGATCC	TTTAACTCATTCTGTGAGTAATAATATAGGCGA
GTATTCTCCACGTATGTGGAGGTGATCC	TAGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC
GTATTCTCCACGTATGTGGAGGTGATCC	TGCACTTGGTCCTTGCGCCTTTAAATTGCGACT
GTATTCTCCACGTATGTGGAGGTGATCC	CACAAAATCCAGGTACTACTTTAATCCATGGA
GTATTCTCCACACATGTGAAGGTGATCC	TAACTGATTTAGTGGGTGCAGTTATGGATTGAG
GTATTCTCCACACATGTTGAATCTGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_061204764.1\|909909_911400_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP047142.1\|WP_061204763.1\|912762_913626_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP047142.1\|WP_065990566.1\|923306_923825_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP047142.1\|WP_061204761.1\|914473_915352_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP047142.1\|WP_078009238.1\|925403_925631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990557.1\|913652_914300_-\|temperature-sensitive-replication-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990572.1\|925614_927270_+\|ATPase	unknown	unknown	gnl\|CDD\|378384
NZ_CP047142.1\|WP_065990554.1\|907871_908432_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP047142.1\|WP_065990555.1\|911511_912747_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP047142.1\|WP_065990562.1\|921549_922689_-\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NZ_CP047142.1\|WP_065990633.1\|924196_925414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990558.1\|917922_918489_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|376578
NZ_CP047142.1\|WP_005719132.1\|918559_919183_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP047142.1\|WP_054833014.1\|908522_909890_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP047142.1\|WP_065990564.1\|922685_923021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990560.1\|920996_921572_-\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NZ_CP047142.1\|WP_065990574.1\|927250_927496_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP047142.1\|WP_065990632.1\|923004_923208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990576.1\|927506_929450_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP047142.1\|WP_081307146.1\|915660_916407_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_061204764.1\|909909_911400_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP047142.1\|WP_061204763.1\|912762_913626_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	7.44437e-109
NZ_CP047142.1\|WP_065990566.1\|923306_923825_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	7.34606e-06
NZ_CP047142.1\|WP_061204761.1\|914473_915352_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.42387e-61
NZ_CP047142.1\|WP_065990562.1\|921549_922689_-\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	3.95944e-176
NZ_CP047142.1\|WP_065990554.1\|907871_908432_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	1.2833e-27
NZ_CP047142.1\|WP_065990574.1\|927250_927496_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	8.35063e-13
NZ_CP047142.1\|WP_065990572.1\|925614_927270_+\|ATPase	gnl\|CDD\|378384	pfam10088, DUF2326, Uncharacterized protein conserved in bacteria (DUF2326). This domain, found in various hypothetical bacterial proteins, has no known function.	4.27394e-11
NZ_CP047142.1\|WP_065990558.1\|917922_918489_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.09694e-98
NZ_CP047142.1\|WP_005719132.1\|918559_919183_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.51871e-12
NZ_CP047142.1\|WP_054833014.1\|908522_909890_-\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP047142.1\|WP_065990560.1\|920996_921572_-\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	4.97422e-92
NZ_CP047142.1\|WP_065990576.1\|927506_929450_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	9.90157e-38
NZ_CP047142.1\|WP_065990555.1\|911511_912747_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	9.21102e-165

>NZ_CP047142.1|WP_005719132.1|918559_919183_-|M23-family-metallopeptidase
MKFRKLIISLLGTALLTSSVGLSTTTASADTLDDSQNTTEVQPKNLKWAYPFKANKKNGVRPMYNAQTFGITNYMRSTTPPSYFHDGWDFGFSEVGHSNVYAIHQGTVKKVAYGNGLGWFIWVISPDNYVEVYQEGFNKKKDIYVKTGQKIKLGQKIGKLTGSHLHLGVTQTNKDYINKYGFPCKNWNVNNGTWLNPIEVIKSNLKK
>NZ_CP047142.1|WP_065990558.1|917922_918489_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MTENNRQAEGTDIKAKANYDTAIFAGGCFWCMVEPFDTVDGVEKVVSGYTGGHVANPTYEQVCSGTTGHTEAVEITFDPAKISYDQLLNYYWQVTDPTDAMGQFQDRGDNYRPVIFYNSPAQKEAAEKSKQRLQASGKFDKPIVTKIEPAKPFYPAEEYHQDFYKKDPLRYAMEEAGGRAKFIKEHWD
>NZ_CP047142.1|WP_081307146.1|915660_916407_+|hypothetical-protein
MEKDMFTKQEFKPQGYKENVERLKLFYHSEFYQDLKKLYSNYLNKVEDALYQDPDSSDEFLYIALGEKYKLDVSKKNNSFCLIDKVGNSEIALGADAICGVKCLAKYYPDLDDWIDAYETIRSQTSLHFVWPRHKLPTINTLRYIKYLDRIDFTLFDLKNYFEGNKNTPLARAYKNEVTNLWLSQFYDFPSFVKKMQLGRFVDKKYNVLNIASRQNEIIKKFPAKSELSNSMPIYADSLISLVKDNII
>NZ_CP047142.1|WP_061204761.1|914473_915352_+|YitT-family-protein
MDQLDKFNRRYNFLSKLSAAFFYSIAVAVALNFFWTPGHMYSSGITGFAQLINTVSERYLPFTLSTSMMYFLLNFPLFILAWFKIGHKFTFFTIVAVVLGSIMMHAIQLWQMHLDPLVCAIFGASINGVGTGMALKNGISTGGLDIIGIVIRQKTGISYGKFNIFINLIIIAAAGYMFGWTRALYSALTIFINGRVIDAVYTQHQKMQVMIVTQHPQHIIDGIQNRMHRGITILHDAEGAYSHIEKTVLITIIDRYDMYDIRQIVQGADPYAFMSVSEVEKVYGRFKEQEIV
>NZ_CP047142.1|WP_065990557.1|913652_914300_-|temperature-sensitive-replication-protein
MSSYYELMWRNDELTSYTTDKLNFIYNAINHPLSVRYRQLYPNRLDWQKALNRHNAAIQKVKDLLIERKDSHNIREAWLKLHPNAQTKANNGFTVEQLANKFPYMAKQLGAFMEIENIEIKYFDEEFKPRYDLDDFSDIFSANYPASGFTQSGITQEALLKLYPNVSAKNLDQILKMADCEFEQENGTEVIPYWYAVNAKRMLVDGDSFAATFDD
>NZ_CP047142.1|WP_061204763.1|912762_913626_+|homoserine-kinase
MIIKAPASTANLGPGFDSLGMAVSLYLEVEVLSVADRFQVDHVMKGIPHDENNLIVKTALTVYPGLQPLHLRVKSNIPLAHGLGSSSSAIAAGIELANQIGKLGLSDEEKVQLGAKIEGHPDNIAPTILGGLVVGAEVNHHFDAVEAPLPPYALVAYVPDYNLETKTARAVLPKELAFGVATHGSAVANTLIASLFAQDYPKAGELMEQDVFHEVYREKLVPELVKVREVAHSKHALATYLSGAGSTIMTWIEDKHVAGFLSGLRKHDLKDETLILHPDEQGVQVIQ
>NZ_CP047142.1|WP_065990555.1|911511_912747_+|homoserine-dehydrogenase
MAIKIALLGLGTVGSGVLKIIKNNKKKIRQTSGEEIIIEKALVRNPEKHRNLANEVMLTTDFDSILQDPEIKIVVELIGGLHPAKEYITAAINAGKNVVTANKDLMATFGSELINLAASKKCDLMYDASVAGGIPILRTLATSYSSDIISEIQGIINGTTNYILSQMGEKGLSYEEALKNAQELGFAEADPTNDVTGKDAAYKIVILSKFAFGTKISIDDFTIQGINNLKDFDIKQAQKLGYVIKLVGIAKNINGKLFVEVAPCLLPENAIMAHIKNELNALQIKSQSLGTAVFTGPGAGSSATANSVMSDVITEIKNVVKKTTGQPFSNFSHVMQLTSSEDVKYSYYLSFEAEETLFDLSKLLSDLEIPVREIKQVQSRIVVVTENISRQQLQDLAIQDQYLKASYKILQ
>NZ_CP047142.1|WP_061204764.1|909909_911400_-|threonine-synthase
MQYRSTRGSKENTLTAPQAIIQGLAQDGGLYVPVAFPQANFKLEDLSKLSYKQIAAMVISLFFDDFTKEQITTAVQSAYSEQWDDRSIVPIEKHDNRFYMELFHGPTLAFKDIALQMLPQLMTRAVQIEKIAKDIIILTATSGDTGTASMRGFANQKGTDVIVFYPEGGVSPVQLKQMLSQRGNNLRAIAIKGNFDDAQTEVKKIFNDDSFKNRLNANGYQFSSANSMNIGRLVPQISYYLYTYGQLVRRQEIKLGDEVNFAVPTGNFGDILAGYYAKKLGLPIKKLICASNENNVLTDFFNNGVYDKRRKFHLTNAPAMDILVSSNLERLLFDLYDENNYEVASLMNQLTQRGHYQVSGEVFTKLQKNFAAGFATEEEVKSEIKRVYNYDRYVIDPHTAVGSFVANQYQKKTGDQTPMVIVSTASPYKFPETVYEAITGGPSMQTGVGAIKELHDELGGQLSIGVRALFDREPKTEKIIEPNDMEKEISSILDLK
>NZ_CP047142.1|WP_054833014.1|908522_909890_-|aspartate-kinase
MKVVKFGGSSLASGNSVDKALSIINADPERQVVVVSAPGKRTEDDIKVTDLMITYAYMSLRSNNYQDIATRIFKRYELIAQYFELPEAELEDIKQLLLTLPKLSYPNNDYRMATFKAHGERLNAILIAKILNHQGIKARFLEPKDVGLIVTGTSNNAEVNPETYVNLKRIKAAKDEKIIFPGFYGITPSGHIATFSRGGSDITGAILARGLNADLYENFTDVDAIFSANPHIVDQPKPIKRMTYQEMRELSYAGFSVFHDEALIPAIQGEIPVNVKNTNAPEKPGTMIVPEDGFIPKHTITGIAGGKNFAALYLRKYMLNKGAGFTLKLMEILQKHHVSYEHMPSGIDDITIIFKKDVLTDQLIDVICNEIQTSLNPDQMQWIDDYAITMVVGEGMKDKLTLCASLLYPLGKKNISIQMINQGASQISIMIGTRRQDEEVVIKTIYDNFIAQDKI
>NZ_CP047142.1|WP_065990554.1|907871_908432_+|histidine-phosphatase-family-protein
MTTVYFVRHAQPDLSVHDDLTRPLTEKGLQDRKKVTDYFRDKHIDQAFSSPFKRAIDTIQPVIDEKELTLSSISDFRERKIGDEWISNFHEYCERQWEDFDYKLRNGESLKETQKRNVVALKLVLSKYQDQTMIIGGHGTAIGSVINYYDPSFKYEAFAMIQPKNPFIVKMSFDGEKYLEYKVVTF
>NZ_CP047142.1|WP_065990560.1|920996_921572_-|DUF2815-family-protein
MNLRRNHNMSQQTKVVTGINTRLSYANVWEPKSINGCKEKYSVSLIIPKSDQKTITAIEKAIDAAIQEGIGKFGGKKPNKATLKLPLRDGDVERDDAAYQDSYFINANSITAPQIVDKHVQPILNRDEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQKIRDGEPLGGHASASDDFTAIDDSSDDDFLA
>NZ_CP047142.1|WP_065990562.1|921549_922689_-|DUF2800-domain-containing-protein
MSSPKHHALLSASSANRWLSATPLPRLEQYFPHSTSSAAAEGTAAHALGEYKIHRLLGDQFKRPVSDYQSDEMESLTDDYASYALEQYQKAKRYAKDATISVEQKLDFSKYVPEGFGTGDCVIVSDHLLQIIDFKYGKGVRVEAKNNPQMKLYAIGALEIFGALYDIDEVETTIFQPRMANISTWTINAKQLIHWANTELKEKAELAFAGQGTVRYGPWCQFSACNAVLRARYDYHHKLTRFQLRSPNLLTDSEVTKVLERIDDLNRWAHEVKDYAGNLAINHGKQWPGYKIVEGRSVRHYKDEAAIAKIAEEHGYHDIYQRKLLPITKLEKQVGKKKFTELFSQEIVKPAGKPTLVPNSDRRQSIGKSNPKDEFKEES
>NZ_CP047142.1|WP_065990564.1|922685_923021_-|hypothetical-protein
MSAMNDLDLQLKEREEFYHRMAEEAVEGLKTIQTVRQQLFGSNNNQDVNEKPKHNPVQDKITIRQMLAKRCQEGYTDQVKELLHKFCADKLSDVNPKDYEDLYYSAEGIGQ
>NZ_CP047142.1|WP_065990632.1|923004_923208_-|hypothetical-protein
MVNKVSIKVTKHPYQEGIVSMRNITIRERLLQLLLGKPHHLMVISPGKDVQQLQINEVKEASHECNE
>NZ_CP047142.1|WP_065990566.1|923306_923825_-|sigma-70-family-RNA-polymerase-sigma-factor
MNFNNSEYELVDEQDDKLIVRVKHMGNQTVVVTKAEGNIIFDLDHQQYNSDHRNERHQDKFFKQDPSNPDMNMMDSLADRESIEVTSVYGKDNFLDKIVEKEDRQSRQMLAEQLPAALATLTGKQKYTVTQYYCQGIKKNQIAKMMGISKVMAGRHVKAAIKKLRQFYDIED
>NZ_CP047142.1|WP_065990633.1|924196_925414_+|hypothetical-protein
MEFSDFFDMLWTYLGSPDESKDNKGRPKFFCHLIDLIIRTPQTDVEDEKAQSGDLNPFTGRVADTINKYCIGSRPIPKKDAKELLSRISNGKKFVDEINFSAPGARESIRNKLREEQFEVTTSSLGEVCFKIMKAFLNKFKNGETSVKTNDVKTNQNFIDNLRLLHDVDIECPLCGESLIKNGISNAIAGYDVVHIFPDNLNEKEKAKFAKIKKAPENSDALENKIPLCLNCANVYLNNPTLNDYQRLIHKKQHIINEKRIAQGLNQLTLEVKLTKVIQGLKKVKPNLANSVVDYDAHTVEEKISHDYALQGAVSYYVSGYYNKIKDQFSNLEGPDFSFDELATTIRLAYFKFKREQLDQEEIFNHLADWIITKEQLPQDYSEASRIIVAFFVQNCEVFEVENAQ
>NZ_CP047142.1|WP_078009238.1|925403_925631_+|hypothetical-protein
MPSKVTDYKESTLASLPKIMKKLNEQAMNPQDLYKRTRRSFDDVGAFVEALDCLFILNRIRIDEETGVISSVKAN
>NZ_CP047142.1|WP_065990572.1|925614_927270_+|ATPase
MLKQISCDQFMMDGHPRGSIYFDKGLNVILGGHSGTNSIGKSTFLMIIDFVFGGTDYVKKDLDVQKNVGPHIIKFAFEFNDKNYYFSRSTEDFQYIYICNEKFIPKDNKRITVEEYLDFLSKQYNLDLPGLTFRGAVGRFIRVYNRQTTNEKRPLQNSNQEPAKQQVYGLLKLFDKYSPIENREEATKQAEEAYTTFKNAGTYRYVPIVDTKRQFNENLNKIEQLKQKLSDLQSENNEGSLNLDDMQAARLREIRNDLSQLREQKNTYLSRLNVIKSNEEVGPKRYRNNYHELEQFFPNVNIQRIEKIDKFHHQITKFLKLEFEREKYTIEKNVDDLNHHISQLVNEAQEIKNQQGPNVQTALLNEYADKKAELKQLEDENKNYQKKKKLQQDKKDQQDALKATINTELAEVQHSLNTEMASLNEQVCGSSSFKPPRIELKPTGYNFETINDQGTGTSFKGLIIFDQACLNLTGLPFFVHDSLLFSNIEIDRRNRIVEMYAQETKQIFISIDSIEVLSEKAQEIIRENTVLTLERGGKELFGRSWNEQATK
>NZ_CP047142.1|WP_065990574.1|927250_927496_+|helix-turn-helix-transcriptional-regulator
MSKQPNNLKIKYKVSYKKLWKLLIDRGLQKKDLQVECDISAASVAKLGKDANVTTDLLMKICTGLDCNLNDICETVPINEE
>NZ_CP047142.1|WP_065990576.1|927506_929450_+|site-specific-DNA-methyltransferase
MQTDNEKYNETVQPNTAFLNELKDKLPEFFTREGSFDLEKFRNQLKDKNINELSEGYQLDFIGKDYARRQAGEMPSTVIVPDEKQNQGEGKNSKNLFFTGDNLEVLRHLQNNYQNKVDMIYIDPPYNTGNDDFAYPDSFEYSDSKLKDMFGIDDDRLEKLKSIEGNASHSAWLTFMFPRIILAHRLLSDEGCLFVSIDDNEVENLKYLLLSIFGENNFIAQLIWKRRATAPNDNNIGRNHEYILAFAKNNEKVQLGLLPRTGNSITRYKNPDHDPRGRWVASDLSVNGKGGKLAKSTVYGIKNPYNGKIYYPNEGKGWIFAKDKMDNYISTGRVSFRQSTGRPFLKRYLSEVRNGVTMPTILDNFGFSQDSSKEIKKLFGTNVFDYPKPTQLLKAIIKVGMKSKDGLVMDFFAGSSSTADAIMQLNNDDSGNRKFIMVQLPEITYHVNKNGKEIPTRGGRAAYNAGYKSIDEISRERIRRAAKKIREDNELTLPENFDGSFKHYRVVKPVKQTLEEIEDFDPNNTNLFTNMVDSFSSKSLSVDGNATGEQTILTTWLVKDGYPFDTDVEEVKFGNYSAHKVEDNRLYLINEGWGADQTKELLNRLGTHQLEIQSVVIFGYSFNVAELRELENGLKQLDSKVTLIKRY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047142_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_5

965657-966050

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCTCCACGTGTGTGGAGGTGATCCT	PILER-CR
GTATTCTCCACGTGTGTGGAGGTGATCC	CRISPRCasFinder
GTATTCTCCACGTGTGTGGAGGTGATCC	CRT

6 spacers

The CRISPR arrays of NZ_CP047142_5

>merge|NZ_CP047142|5|965657-966050|PILER-CR,CRISPRCasFinder,CRT
GTATTCTCCACGTGTGTGGAGGTGATCCTGGAAGCTTGGTGTTGACTATATTCCCAATAGTGTATTCTCCACGTGTGTGGAGGTGATCCTGCTTCGTGATGGTGTAGCAATTGACAAAAACTGTATTCTCCACGTGTGTGGAGGTGATCCTCTTCAATTACTTTCTTAGCTTCAGCAATTGTAGTATTCTCCACGTGTGTGGAGGTGATCCCACAAGAGCAATTGGCGGAAGCCGTAGGGCTTGGTATTCTCCACGTGTGTGGAGGTGATCCTAAAAAAAGAAAATTTAATACAGTATGAAAAAAGTATTCTCCACGTGTGTGGAGGTGATCCTATGCAGAGTGGCGTGCATGTCATGATTACAGGGTGTTCTCCACGTATGTGGAGGCTGAAA

>NZ_CP047142|5|5|965657-965990|PILER-CR
GTATTCTCCACGTGTGTGGAGGTGATCCT	GGAAGCTTGGTGTTGACTATATTCCCAATAGT
GTATTCTCCACGTGTGTGGAGGTGATCCT	GCTTCGTGATGGTGTAGCAATTGACAAAAACT
GTATTCTCCACGTGTGTGGAGGTGATCCT	CTTCAATTACTTTCTTAGCTTCAGCAATTGTA
GTATTCTCCACGTGTGTGGAGGTGATCCC	ACAAGAGCAATTGGCGGAAGCCGTAGGGCTTG
GTATTCTCCACGTGTGTGGAGGTGATCCT	AAAAAAAGAAAATTTAATACAGTATGAAAAAA
GTATTCTCCACGTGTGTGGAGGTGATCCT

>NZ_CP047142|5|5|965657-966050|CRISPRCasFinder
GTATTCTCCACGTGTGTGGAGGTGATCC	TGGAAGCTTGGTGTTGACTATATTCCCAATAGT
GTATTCTCCACGTGTGTGGAGGTGATCC	TGCTTCGTGATGGTGTAGCAATTGACAAAAACT
GTATTCTCCACGTGTGTGGAGGTGATCC	TCTTCAATTACTTTCTTAGCTTCAGCAATTGTA
GTATTCTCCACGTGTGTGGAGGTGATCC	CACAAGAGCAATTGGCGGAAGCCGTAGGGCTTG
GTATTCTCCACGTGTGTGGAGGTGATCC	TAAAAAAAGAAAATTTAATACAGTATGAAAAAA
GTATTCTCCACGTGTGTGGAGGTGATCC	TATGCAGAGTGGCGTGCATGTCATGATTACAGG
GTGTTCTCCACGTATGTGGAGGCTGAAA

>NZ_CP047142|5|4|965657-966050|CRT
GTATTCTCCACGTGTGTGGAGGTGATCC	TGGAAGCTTGGTGTTGACTATATTCCCAATAGT
GTATTCTCCACGTGTGTGGAGGTGATCC	TGCTTCGTGATGGTGTAGCAATTGACAAAAACT
GTATTCTCCACGTGTGTGGAGGTGATCC	TCTTCAATTACTTTCTTAGCTTCAGCAATTGTA
GTATTCTCCACGTGTGTGGAGGTGATCC	CACAAGAGCAATTGGCGGAAGCCGTAGGGCTTG
GTATTCTCCACGTGTGTGGAGGTGATCC	TAAAAAAAGAAAATTTAATACAGTATGAAAAAA
GTATTCTCCACGTGTGTGGAGGTGATCC	TATGCAGAGTGGCGTGCATGTCATGATTACAGG
GTGTTCTCCACGTATGTGGAGGCTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_065990614.1\|957846_959070_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047142.1\|WP_065990626.1\|966147_966903_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NZ_CP047142.1\|WP_065990370.1\|976791_977427_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
NZ_CP047142.1\|WP_005719716.1\|972001_973114_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NZ_CP047142.1\|WP_005719721.1\|967162_968080_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP047142.1\|WP_065990364.1\|973404_974607_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP047142.1\|WP_061204743.1\|970165_971986_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP047142.1\|WP_065990368.1\|977401_978460_+\|DUF916-and-DUF3324-domain-containing-protein	unknown	unknown	gnl\|CDD\|371730
NZ_CP047142.1\|WP_065990616.1\|959035_960268_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047142.1\|WP_065990364.1\|980566_981769_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NZ_CP047142.1\|WP_065990620.1\|960697_962101_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP047142.1\|WP_065990622.1\|962100_962424_+\|metal-sulfur-cluster-assembly-factor	unknown	unknown	gnl\|CDD\|225062
NZ_CP047142.1\|WP_013642032.1\|962609_963053_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP047142.1\|WP_065990610.1\|957042_957837_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP047142.1\|WP_065990618.1\|960254_960695_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_CP047142.1\|WP_005719725.1\|964570_965473_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP047142.1\|WP_065990628.1\|968072_970136_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP047142.1\|WP_141685550.1\|978545_980291_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_005719727.1\|964046_964571_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NZ_CP047142.1\|WP_065990624.1\|963084_964044_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|376820

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_065990614.1\|957846_959070_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.37063e-92
NZ_CP047142.1\|WP_065990626.1\|966147_966903_+\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.49772e-49
NZ_CP047142.1\|WP_065990370.1\|976791_977427_+\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	3.96495e-07
NZ_CP047142.1\|WP_005719716.1\|972001_973114_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP047142.1\|WP_005719721.1\|967162_968080_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP047142.1\|WP_065990364.1\|973404_974607_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	6.39353e-24
NZ_CP047142.1\|WP_061204743.1\|970165_971986_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP047142.1\|WP_065990368.1\|977401_978460_+\|DUF916-and-DUF3324-domain-containing-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	4.9257e-34
NZ_CP047142.1\|WP_065990616.1\|959035_960268_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047142.1\|WP_065990364.1\|980566_981769_+\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	6.39353e-24
NZ_CP047142.1\|WP_065990620.1\|960697_962101_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047142.1\|WP_065990622.1\|962100_962424_+\|metal-sulfur-cluster-assembly-factor	gnl\|CDD\|225062	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only].	1.4818e-31
NZ_CP047142.1\|WP_013642032.1\|962609_963053_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	5.64116e-54
NZ_CP047142.1\|WP_065990610.1\|957042_957837_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.50869e-143
NZ_CP047142.1\|WP_065990618.1\|960254_960695_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.28197e-56
NZ_CP047142.1\|WP_005719725.1\|964570_965473_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	7.42691e-173
NZ_CP047142.1\|WP_065990628.1\|968072_970136_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP047142.1\|WP_005719727.1\|964046_964571_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	7.92136e-49
NZ_CP047142.1\|WP_065990624.1\|963084_964044_+\|PhoH-family-protein	gnl\|CDD\|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	2.84574e-136

>NZ_CP047142.1|WP_005719725.1|964570_965473_+|GTPase-Era
MEEKEFKSGFVALVGRPNVGKSTLMNYLVGQKVAITSNKPQTTRNRISGIYTSDEMQVVFVDTPGIFKPHSKLDDYMDKASVSSLNDVDLVLFMVEPEEMGKGDQYIANLLKEVKVPVLLVINKVDEIHPNKLLPIMDSYHKLEGFKEILPISATQGIGIEDLLKTIKEYLPVGPQYYGADQITDRPEYFVVAELIREQILRLTSQEVPHATAVAVDHMNTHQNGKLLIEATIYVEKDGQKGIIIGKGGKMLKQIGINSRQEIERLLGEKVNLRLWVKVQHNWRSDPNFLKRIGYDKKEL
>NZ_CP047142.1|WP_005719727.1|964046_964571_+|rRNA-maturation-RNase-YbeY
MDPIDITYNDEVGFLDDEKRNWQDWIMKLLLLAKKEIGKDNNLEMSINFVDEDRSHEINLKYRDKDRPTDVISFAIEDGEDSIDLAAFADDPDFQEDIGDLFMCPSVIKRHSKEYGTGFDREFGYTIVHGFLHLNGYDHIKPDEAKEMFGIQGKVLEDYGLPLYPDQLDEGRGK
>NZ_CP047142.1|WP_065990624.1|963084_964044_+|PhoH-family-protein
MAQTTFTPQKAENIQQLVGVNDGNLKLLSEGYDLSVTDTGNDIVIAGDDEANVKKAVAVLKALDSVVNTGVNVGAPDTVSAMKMADKGTTEYFADLYKKVLIRDAKGRPIRVKNMGQKRYVEAIDKSDVVFGIGPAGTGKTFLAVVCAIAAFKKGEVSRIILTRPAVEAGESLGFLPGDLKEKVDPYLRPIYDSLYAILGTNTTDRLMERGVIEVAPLAYMRGRTLDDAFVILDEAQNTTDAQMKMFLTRLGFNSKMVVNGDMTQVDLPGRQHSGLIDARHILKNIDQIKFINFSANDVVRHPVVAKIITAYEKEDIKH
>NZ_CP047142.1|WP_013642032.1|962609_963053_+|GatB/YqeY-domain-containing-protein
MSLSDKIMTDMKTAMKNHDKTTLDTVRMIKSALMNEKIKLGHDLNADEELTVLNREKKQREESIEEFAKAKRDDLVEETKKELAVVEKYLPKQMSKDELESAVKETIDEVGAKGKSDFGKVMKALMPKIKGRADGKAASQAVRDQLN
>NZ_CP047142.1|WP_065990622.1|962100_962424_+|metal-sulfur-cluster-assembly-factor
MGEESLLPKEKAVYDALKNVIDPELGVSLVDLGLIYSVEVDDQNVCHINWTLTTMGCPIIELLQDMIKKAALQVDGVEKCEAKLVYYPQWTPKMMSQVARLTLGIHI
>NZ_CP047142.1|WP_065990620.1|960697_962101_+|Fe-S-cluster-assembly-protein-SufB
MTKAEDIVKDEDYQYGFHDDIQPEFSTGRGLTEEVVRKISAEKNEPKWMLDYRLKAYQIYKKMPMPDFGPDLSDLNLDDMLYYQKYTKKKYRDWDDVPDEIKETFERLGVPEAERKYLAGSGAQYESEMVYHNMKEQFDKMGIVFTDTDTALKKYPELFKKYFGKLVKPTDNKFAALNCAVWSGGSFIYVPKGVKVPTPIQAYFRLNAENSGQFERTLIIVDEGASLDYVEGCTAPQYSSDSLHAAGVEVNVLKDAYCRYTTIQNWSDNVYSLETKKAVAASHATMEWVDGNLGAQVTMKYPSVYLNGEGARGTMLSIAVAHKGIHQDSGSRMLHNAPNTSSSIVSKSIAKGGGSTDYRGSVKFGKNSSGSKSHVECDTIIMDDKSSSDTIPTNSIENSNVAMEHEATVSKISDEELYYLESRGIPERKATEMIIMGFVEPFTKQLPMEYAVELNRLISFQMEGAIG
>NZ_CP047142.1|WP_065990618.1|960254_960695_+|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MGLNNLRTLYQALVLDHASHPRNKKEMKEATAMQTVHNPSCGDTVNIFVKVQNEKIVDVSFTDSGCTISQASASMLTQSVKDKSVSEALEMTKIFSDLAIGKEHTSDEIEKLGDAAVLTQVMQFPARIKCATISWWALEQALLKKG
>NZ_CP047142.1|WP_065990616.1|959035_960268_+|cysteine-desulfurase
MDKEAITKIRNDFPILKQKINGNRLAYLDNAATMQMPVPILHKINSFYQTSYANVHRSVDTLGFNATKQYEEARGKVASFINAADANEIIFTSGCTDSLNLVAATYGEQNIHEQDEIVLTIMEHHSNLLPWQQLAKRKGAILKYIDLTESQTLDLDDVKKKITAKTKIVAIAHASNILGMMNPIEEVIKIAHQVEAVVVVDGAQAVSHFPIDVQKLDADFYAFSGHKMLAPTGIGVLYGKKNLLNQMPPYRFGGEMIGNVTKYNATWADLPQKFEAGTPNIIGAIGLGYAIDYLHEIGMNRIQTYENELSKYLMQKIEKLDFVAIYGPKENHTGVFSFNLKNIHPHDVATALDMQGIEVRAGHHCAQPLMRRLGVESTVRASLSFYNNKEDIDQLIAGISETEEFFNGTK
>NZ_CP047142.1|WP_065990614.1|957846_959070_+|Fe-S-cluster-assembly-protein-SufD
MFSKTTFQELSSKYNEPDWLINERLEAFNLIEKLLLPKMQQFKYSDWPLTINDDFALEQSALKISDNSELEENRVICQDIFEASKQYPEIVQKYLNSVSHFNEDKLLAYNTAFMNNGLFLYIPDNVEIQEPIEIEIVQNSMSKSALISHIVIVVGKNSKAKFIQHLSTVGHEKNLANLVVEVQALAGSNVEFSSLDEMEENTTLYFNRRANLARDAHVEWNVAFMNDCNTVGDLASELLGEGSYAYSKAIAITTGNQKVAVNNRVINRGPHSTGLINQRGVLLEDSRLIFNGIGQIVHGAHGSKADQQNRVLMMSDTAQGDANPLLLIDENDVIAAHAASVGPVDPIQMNYLMSRGIPYAQAERMVIHGFLDPVLGAIPKGKVKDRMLAISERKLINGQRSYYKNKK
>NZ_CP047142.1|WP_065990610.1|957042_957837_+|Fe-S-cluster-assembly-ATPase-SufC
MATLEIKNLHVEVKDEEKKAYKKILKGVNLTMHTGEIHAIMGPNGTGKSTLSETIMGNPKYRVTKGQILLNGENVLDMTVDERARKGLFLAMQYPAEVPGVTNAEFLRAAINARRPKDDPIPVMDFIKELNKNMALLDMNDSMTERYLNQGFSGGEKKRNEILQMLMIEPTFGILDEIDSGLDIDALRVVSRGVNAMRGDNFGALMITHYQRLLNYIVPDVVHVMMDGRVVKDGGPDLAKKLEQEGYAGLRDELGLDIKLVDED
>NZ_CP047142.1|WP_065990626.1|966147_966903_+|DNA-repair-protein-RecO
MARELKEVQGIIFKRQKYKEADLLAKIMTKQDGIMTLIVKGALRPKSRLSAATLNFSIGTYVIYTSGKGLSNLRTYKEARQFDGLYNDLTKNAYISFIFDLIDHAFVEYQPIGKYYDLALFALKKIDSGVDAEMITQIVQMKILAAYGVEPQLKHCVICGKEKGVFDYSIKMGGVICSDHFSTVTSRMHLKPKETAVIRTIGLLPIERLGDIKINEEIKRATRKAIDRIYHETIGLNLKTKKFLDELKLFS
>NZ_CP047142.1|WP_005719721.1|967162_968080_+|glycine--tRNA-ligase-subunit-alpha
MADKKLNIQNMIFKLEQFWSSKGCMIMPSYDVEKGAGTMSPYTFLRAVGPEPWAACYVEPSRRPADGRYGENPNRLFQHHQFQVVIKPAPKDIQQYYLDSLKVLGIDPLEHDIRFVEDNWANPSMGCAGVGWEVWLDGMEVSQFTYFQVVGELDVKPTMSEITYGVERLASYIQDVNSVFDLEWGNGILYRDIFKQPEYEHSKYAFEESNQEQLLQFFDIYEATAKRLLDKNLVHPAYDYILKCSHTFNLLDARGAVSVTERAGYLSRIRNLAHEVAVKFVEEREKRGFPLLKSAEDKKAGVENG
>NZ_CP047142.1|WP_065990628.1|968072_970136_+|glycine--tRNA-ligase-subunit-beta
MAKDYLFEIGTEEMPAHVVPRSVKQLADRTRKFLKENGLKFKDIKTFSTPRRLTILVEDLAEKQDDIDEVKKGPAKKIAQDQDGNWTKAAQGFARGQGMTTDDIYFEELKGTEYAYVHVQKEGKKASDILLGMSDIIKAMTFPTKMRWDSNDFEFVRPIHWLVSLFGSDVIPVKILDITAGRKTQGHRFLGDSVVLANADDYEDALKDQFVIANADERKDMIVRQMDELVKKNHWQVKPDRDLLEEVTYLVEYPTVFAGSFDEKYLQIPDEVLITSMKDNQRYFEVYDENGKLINHFIAVRNGNKDYLDNVISGNEKVLVARLDDAQFFYDEDRKYPLSHFVDRLKNVSFHDKIGSMAEKMQRVRMIGDYLAKRWDLPENVVKDFDRASELYKFDLVTQMVGEFAELQGVMGMHYARLAGEDEEVSVAIKEHYMPATAEGPLPETTVGSLLSIADKIDTIVTFFGAGMIPTSSNDPYALRRYAYGIVRILLNEKWSLPFNEVLPEIISMLNGVTPAKLPKSDADQEIADFVRDRVKQYLQKNDFKYDIIDAVLASSQQDPSQILAAANVLQLHHDDEEFKPVVESLTRIDNILKKAKFKSNTAVDESLFDDNSEKELYAGVQNLQDIESLADLYQGFVQLQPVIDQYFETNMIMAKDEKVKNNRLAQLYAVNELADRLGDLSKLVIK
>NZ_CP047142.1|WP_061204743.1|970165_971986_+|DNA-primase
MAGRIPEDFISEVRSNVNIVDVISQYVSLEKKGKDYIGLCPFHQEKTPSFTVNADKQFFKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMPNGYGHNSGTKLNPLMQMHQDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQDDDLAQSGLFVQARDGQLYDRFRDRLMFPLDNENGRTIGFSGRRISNDKTEAKYMNSPETEIFTKSKVLFHFAEAKKAARGEGHLVLYEGYMDVIAAYKAGVKSGIASMGTSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGIVVLPEKLDPDEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPVEQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDVPTEQSVVEKNPSQTRLLYLFIHSTDAQKYMLEGQFHFPNQDFETLAQDWLKYAETHENPQIDGFLDFIPEQLQGIIVDAEMAQMPKDSTIQEVDALVLALKRRNIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRILG
>NZ_CP047142.1|WP_005719716.1|972001_973114_+|RNA-polymerase-sigma-factor-RpoD
MAEKETTQKLSLDKMVKQVVKDVKKDKSITEEDFTARLIKPYNLQGKAVDQLVQEFEDNGISIVDENGDPSKLALKKQKDVEKAELKDMSAPSSVRMNDPVRMYLKEIGRVPLLTADQEIALAKRIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFMD
>NZ_CP047142.1|WP_065990364.1|973404_974607_+|IS110-family-transposase
MNIIGIDVSQGESHATLITEEAEKVTFEFKHNKSGFQILNSYISSNTIIIFETTGVYSAQLTAYLKSKKVKFYELNPLEAKLRMASLRRNKTDKNDSFKLALLGATQLTEIKNHCNKQSALPYDSLRILSLRYKQLIKCRTRILNFLRSSLELTFPELNQIFKNAYAVLALQVFRMYCHPDFLVGLTLKEMTTRVYQSVSRRIHKDVIQSYCAQVWLAAKDSYPAVPADSLEIEIISEYCDEIESYNKEIAYIQNKLIKTAVGLDDFKVISSIPGAGQLNSALLLGFTGDIARFDNYKQLNAFLGLDLNRYQSGKYIKGDTINRRGSSQGRAVETDMIRSMLRNQGKIQNHLIDYYYKLKKPPFNKHDKVALIACANHLNRTIINLVHTHQLYNYSKAIH
>NZ_CP047142.1|WP_065990370.1|976791_977427_+|hypothetical-protein
MKKNKLAKMAAAVLMTGSIAALGTSKVNAEDSGSGASSATSKSSTATFTIDTSKAKLTLDEVPSFDFGSVDPADIYAKKTVSGKGSGEIQVTDTRLNATGWNLAVSTTTALTNSSSSIEGDLTFTPTSFSFTTGNATGWTFSSGTPTLNLPSTSSAEIASSIGKDKGTGSATVSSANLKFTKNNTLAQGTYTSNLTWNLGTTTDESGRASE
>NZ_CP047142.1|WP_065990368.1|977401_978460_+|DUF916-and-DUF3324-domain-containing-protein
MKVVEQVNSFQLKKIKYCLILAISMVLALVCYSKRALAVSNNSAQFMISPVYSSLQKGDRNSGYYDLVVKKEKTVPIKVKIANLNNRQKLTFLVKVGNAVTTDSGTIEYSNFNSGKLLTSKYKISELAKTPKQKVVVKPGSSKIVLLNLKIPKSDFPGTLAGGVYVERLNNAKTKAKKGIVTQNHFAMTLPILLTKHPKAKRIAKMVLDKVKVTKGPVIKAQLSNVNPVIFGQLMINAKIKPLNQNKTIVQKKVQGYQVAPNSTFNFLISQNSSKLKAGKYTLDILMKSGKRRWHYVKNFEIKANQAVPLNKRIKLNNLSIIMWIIMIGLILLIIALVIVILIQRRIMKLRK
>NZ_CP047142.1|WP_141685550.1|978545_980291_+|hypothetical-protein
MVIADNVGSTENTSLSGSPENKTDNKTSDQNSVSSASSQSDGKNNDEVNNSSTVSSSNSSSASSASSKRSIPKNNILAVSSVNWPKRFATWTQGKRVYGTFSRNKYGFMNGVDESAGGLHKYVSFNIMAHLSWTSSPKTQFYALYETNGQYHGQIIDRSKVDIVKMESYSYTALWYVSIDLAGISADKVQICIFDDDGSYGFWKSNGVADDKTYPFIISSPIFGWSKIDQSLRDADDGIIYAGQSMKYKNNAPRVSQDNIVDFSNATLDSKKSIKFNQQTVVNNELVSDYTISTNLSSLENQITGLDQSGNYGISTDLTSVLPSTTQAIKSVQYGGLKSINITPEALAKKTINLKDYTDPKFIAKLQKDLGSNLTYKWFYYDQLGTSMSQANAPGATGVLGQDWLSIDNKSDLGKKIEQQLNSNKDGYLQLKIYSSGKLVTVGNPILIKGESSNFEVPDLIDFGTISTDDVINGSSLESQTSATDVLKVTIPATTEVGWEVTARVPEDGALAKLNGKLNLLGKDITTSPTVLADINKSGESSYDLDAKLIFSGYHGQVDPTKYSEAINWKLEPKITLNASE
>NZ_CP047142.1|WP_065990364.1|980566_981769_+|IS110-family-transposase
MNIIGIDVSQGESHATLITEEAEKVTFEFKHNKSGFQILNSYISSNTIIIFETTGVYSAQLTAYLKSKKVKFYELNPLEAKLRMASLRRNKTDKNDSFKLALLGATQLTEIKNHCNKQSALPYDSLRILSLRYKQLIKCRTRILNFLRSSLELTFPELNQIFKNAYAVLALQVFRMYCHPDFLVGLTLKEMTTRVYQSVSRRIHKDVIQSYCAQVWLAAKDSYPAVPADSLEIEIISEYCDEIESYNKEIAYIQNKLIKTAVGLDDFKVISSIPGAGQLNSALLLGFTGDIARFDNYKQLNAFLGLDLNRYQSGKYIKGDTINRRGSSQGRAVETDMIRSMLRNQGKIQNHLIDYYYKLKKPPFNKHDKVALIACANHLNRTIINLVHTHQLYNYSKAIH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047142_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047142_6

2106339-2106403

Orphan

Consensus_repeat	Method
TTTACTTTATAAAGGAAATAATATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047142_6

>merge|NZ_CP047142|6|2106339-2106403|CRISPRCasFinder
TTTACTTTATAAAGGAAATAATATGAAATTTTTGCTATAATTTACTTTATAAAGGAAATAATATG

>NZ_CP047142|6|6|2106339-2106403|CRISPRCasFinder
TTTACTTTATAAAGGAAATAATATG	AAATTTTTGCTATAA
TTTACTTTATAAAGGAAATAATATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047142.1\|WP_065990165.1\|2110377_2110818_+\|CopY/TcrY-family-copper-transport-repressor	unknown	unknown	gnl\|CDD\|131745
NZ_CP047142.1\|WP_065990160.1\|2116719_2118147_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP047142.1\|WP_065990168.1\|2108612_2109923_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP047142.1\|WP_057726317.1\|2100206_2101358_+\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP047142.1\|WP_065990180.1\|2098644_2099478_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
NZ_CP047142.1\|WP_081307132.1\|2111264_2113139_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP047142.1\|WP_065990163.1\|2114484_2114790_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP047142.1\|WP_013642600.1\|2115572_2116718_-\|galactonate-dehydratase	unknown	unknown	gnl\|CDD\|184455
NZ_CP047142.1\|WP_065990161.1\|2115090_2115546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_013087079.1\|2102318_2103629_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP047142.1\|WP_065990173.1\|2105934_2106312_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP047142.1\|WP_065990167.1\|2110022_2110277_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_054832711.1\|2104970_2105330_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP047142.1\|WP_065990176.1\|2105292_2105931_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP047142.1\|WP_013087080.1\|2104051_2104384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047142.1\|WP_057726316.1\|2101409_2102135_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP047142.1\|WP_141685544.1\|2114844_2114994_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP047142.1\|WP_065990178.1\|2099589_2100207_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP047142.1\|WP_065990169.1\|2107691_2108465_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319819
NZ_CP047142.1\|WP_005720719.1\|2103795_2104062_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102

Protein	Function_ID	Function_description	E-value
NZ_CP047142.1\|WP_065990165.1\|2110377_2110818_+\|CopY/TcrY-family-copper-transport-repressor	gnl\|CDD\|131745	TIGR02698, Uncharacterized_16.5_kDa_protein_in_ptsI_3'region, copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. [Transport and binding proteins, Cations and iron carrying compounds, Regulatory functions, DNA interactions].	5.72829e-53
NZ_CP047142.1\|WP_065990160.1\|2116719_2118147_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	4.70313e-144
NZ_CP047142.1\|WP_065990168.1\|2108612_2109923_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.8882e-149
NZ_CP047142.1\|WP_065990180.1\|2098644_2099478_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	1.29481e-06
NZ_CP047142.1\|WP_081307132.1\|2111264_2113139_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP047142.1\|WP_065990163.1\|2114484_2114790_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	3.72623e-09
NZ_CP047142.1\|WP_013642600.1\|2115572_2116718_-\|galactonate-dehydratase	gnl\|CDD\|184455	PRK14017, PRK14017, galactonate dehydratase; Provisional.	0
NZ_CP047142.1\|WP_065990176.1\|2105292_2105931_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.45133e-08
NZ_CP047142.1\|WP_005720719.1\|2103795_2104062_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	5.57912e-13
NZ_CP047142.1\|WP_013087079.1\|2102318_2103629_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.57369e-147
NZ_CP047142.1\|WP_057726316.1\|2101409_2102135_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.45875e-31
NZ_CP047142.1\|WP_141685544.1\|2114844_2114994_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00653941
NZ_CP047142.1\|WP_054832711.1\|2104970_2105330_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.17756e-21
NZ_CP047142.1\|WP_065990178.1\|2099589_2100207_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.16877e-36
NZ_CP047142.1\|WP_065990169.1\|2107691_2108465_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319819	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily. Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.71714e-57
NZ_CP047142.1\|WP_065990173.1\|2105934_2106312_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	3.57728e-17

>NZ_CP047142.1|WP_065990173.1|2105934_2106312_+|helix-turn-helix-transcriptional-regulator
MWDYFKPELTKRLSELSVDDSTSARVRSILTELLPNGEFTVDDVAKKLGYSKQTLQRKLSSENTTFQKQLNSTREVLALNYLQNTDMTTSDIAYLLGYQEFNSFLRAFSIWKGMSISEYREKMNK
>NZ_CP047142.1|WP_065990176.1|2105292_2105931_+|AraC-family-transcriptional-regulator
MFIRCKNKVVESSQLILDGRYEDLLSHYKFNVEEALKKANIPEDCFKKLHPSMSEQQYYNFMAAIGDQISDPFTPIEIATTNPIESFSPPIFAAYSSRNGDIFIKRLAKYKKLIGPLSFKIDEDSKQLSITLTPSNQQYSLPSFLVLSEFAFLVGLLRKTTKEAISPLKITMTSPVNDEQVINFFGCKIESGKSKTITFAKKDLQVNFISYN
>NZ_CP047142.1|WP_054832711.1|2104970_2105330_+|SDR-family-NAD(P)-dependent-oxidoreductase
MPGPLQAVYYATKAYVTSWSNALWREVQGTGVTVSCLMPGAMQTGFINRGDLSSTQLFAHAVSPEGVAKAGYEGMIEGKLNITAGLTAAQKPFMKLAPMLPKKMLMNNVYKMQEQGSRK
>NZ_CP047142.1|WP_013087080.1|2104051_2104384_+|hypothetical-protein
MRTNDIVDIYVAYIDKPGGKNRPVLIIKLLNSKAWLLKITSKYKEKSENIRKHYFPIFDWKKYNLDKPSYIDTKNYLIVNISDLNIEKYRGHFSIADLRKLKDFIDENSN
>NZ_CP047142.1|WP_005720719.1|2103795_2104062_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MKSYKKIQANVDSSLALQAEGIFQDIGLNTTTAINVFLKKVVATGGIPFELKETPEQKASRELIQSISKIPHKEAKTKKEIEDWLDED
>NZ_CP047142.1|WP_013087079.1|2102318_2103629_+|NCS2-family-permease
MNSISKFFHLKENNTSFKTELLAGLTTFVSMSYILFVNPNVLGASGMDKGALFTVTALSAAFTCIVMGLIANYPIASAPTLGLNAFFTYTVCLGMKVKWQTALAAVFVASILFILLTVFKVREMIIDAIPADIKYAISAGIGLFIAFIGLQGGKLIQNSDSTLVTIGSLNNPTVWITIFGLIITIFLMIARVPGAIFIGMIAAAVFGIVTGQIPMPKGVISSVPSIAPTFGQAVFHIGDINTVQMWIVVFTFLLVTFFDTTGTLIGLVQQAGLMKDNKMPRAGEALAADSSGMLVGSVLGTSPVGAFVESSSGIAVGGRTGLTAVWVGIFFLISTIFSPILSVFTTQVTAPALIIVGVLMAENLAHVHWTNLEIAIPCFLIALGMPLTYSISDGLGWGLIVYPVSMIAAKRFKEITPMMWILFIVFVIYFVVLNVK
>NZ_CP047142.1|WP_057726316.1|2101409_2102135_-|MerR-family-transcriptional-regulator
MSERHGIGEVAKKLQVSTRTLRFYDQKGLLKPTKAENGYRFYNEDQVQQLQVIIYLKELGFSLAKIKTLLQADHAQESLALLVNAQLQSNNEEIEKFQTQQKQLHDLQKILTKQSNLELTDLTKMMTNETILKKFRRRMLVYGLLLDAIEIIGIILAFYFGKRGNDIGVIASVGIMLLVVVFGAFKLSLNYYKAVAYVCPHCGHTFVPSFRTFIFAAHTPKMRRLRCPDCHEKSYCLEVGR
>NZ_CP047142.1|WP_057726317.1|2100206_2101358_+|ABC-transporter-permease
MAYIQFQLKKVFKNNIFLITVPLLLIISFIVLGLNATTSRSMSLENQAKGNLAMQNNAIEQMEHSLKHYKKNGEAYNLTKQSISDTKKQRKDSQNLLNAFKQQNWQEVYHYQLKAANLAKNIQLKNHNVSNDEKNALTKNVKFFEYLTKHPLPYEDTPPVTGIQFLLDLNQLYLPFLFILVVTFILTQLYTSKYKNKADISSLLPITNNHRYVFDNLIGIIIAGGIFYLLNILIFIVATLIFKTGNLNYPFYLYKNLTGQTLNEYVPTLKIIMPILVLQLLVGLFIINFIQLISNVVRDKFPTLFITLILLIGVSVSSTVIEPLQKAAAWLPTTYFNVIGIVSGKIAVQYHNNQVTFISGLITLIAGILITYCLGLIINKIRH
>NZ_CP047142.1|WP_065990178.1|2099589_2100207_+|ABC-transporter-ATP-binding-protein
MIKVENLTITTRQPILKSFTTTFKTRNIYQIMAENGAGKSTFLKALTQLVNYKGAITFDNLPFNQIKEKIFFFEENSWLDPNLNSLDYLQFVKVSWHSQHDIDTELSFWGIDQFAKVPIKKYSLGMKQKLIIAMYLVSDAQYLLMDEITNGLDEENRNKLYCRLNDLISLNDKCIILTSHYANEINNLNNVTKLKLENLTMNEVK
>NZ_CP047142.1|WP_065990180.1|2098644_2099478_+|helix-turn-helix-transcriptional-regulator
MTIGEALKQIRHELYLTQEQMCAGVVTRSFYAKVESGRNRISADKLTEILFEHDIDITYFYQLLRNTYSSQSKLKENDLNQKMNQAFNSGKIELIEQNYHKILLQSNSSILKLRAMISVANLKDELNLIDPKVKEKLFVEFDEGANWMTRPDLLRLFTDTMPLWDSSDLSFFIGRLLAKVQKEHNIPELLQERYLRVFENYLAVYYKKNNPVKTINVNVQKIFDYILNLEPTVHFLLYKIAAVYLQNLFLGNKEEAQKIKNEMKKYGYQDIVKTWPK
>NZ_CP047142.1|WP_065990169.1|2107691_2108465_-|Cof-type-HAD-IIB-family-hydrolase
MSKPKIIFFDIDGTLIEKKKSITPKMLETLHALQDNGIMICIASGRPPVQLPKLGVDFDAYLTFNGSYCYNDQDIVFDNPLRQGDVLQMIQNAQKINRPLAVATKTRIAANGVDEDLKEYFAIGGTDLKVAPDFDVVVDQDTVYQIMVGCREKDYDRLVANTQNAKVTAWWDRAADIIPATGSKGVAIEKVLDYYQIPVSEAIAFGDGGNDIEMLKTVGHGVAMGNATEDVKEIADDICGSVQDDGIFTYCKKHNLI
>NZ_CP047142.1|WP_065990168.1|2108612_2109923_+|NCS2-family-permease
MQTLEKVFHLQDAHTTVKRELIAALTTFVSLSYILFVNPNILHAAGIPKGAAFTVTALATAVGCFLMGFIANYPIALAPTLGSGAFFAYNVCVGMHISWETALAAVLVASVLFILITVFKLRELVVNAIPQDMKYAISAGIGLFIAFIGLKNGQLIVNSDSTLVTLGKFSTPAVWITLFGLILTVVLMALNVPGSIFIGMIVTAIFGMIIGQIPLPHSIISGAPSIAPTFGQAVFHIKDINTAQLWMVVLTFLLVTFFDTAGTLIGMTEQAGMVDKDGKIPRIGRAFLADSTAMVEGAVFGTAPLGTSVESSAGIAMGGRTGLTAIFVGIFFIISMIFSPLLQVIPTTVTAPALIIVGVLMASNLKKIDWEKFEIAFPAFLTVVGMPLTYSISDGLALGLIAYPITMIASKRYKKVSPMMYILFVVFVIFFLVTNL
>NZ_CP047142.1|WP_065990167.1|2110022_2110277_+|hypothetical-protein
MKLNKKVLWIIGTLILSAITGIFFYVNGHSTSTTTIGVILAGITLYFLFQTGQLYKKIWIKILVYLIDAVWILIVLLIISLFIY
>NZ_CP047142.1|WP_065990165.1|2110377_2110818_+|CopY/TcrY-family-copper-transport-repressor
MVKLQEKESTISDSEWEVMRIIWTIEPVSSTKIIQELQAKKDWSESTIKTLLRRLVNKNLLSTTKEGHHFVYSAKVNQAQVMTEAAQELLDRMCNMHKGEVILQLLADSPISKNDLAKMKQIINQKEKTAPETVPCNCLPGKEHLC
>NZ_CP047142.1|WP_081307132.1|2111264_2113139_+|copper-translocating-P-type-ATPase
MLIQMFATPFHWMMPGYNWIAFITTTIIMAISAAPYWNSAWSAFKHHNANMNTLVAVGTSVAYFYSIFAMFTGREVYFETAAYVTVFVLLGDVLEEKMHNNASNALAKLIDLQAKDAEVERNGEFVKVPLDQVKVGDIIRVKPGEKVPVDGVIVNGSSTLDESMVTGESMPVTKKKGDDVVGSTINTNGTFTFRATKVGSDTMLSQIVDLVKKAPTSHAPIQNLTDKISNIFVPAVLIIAILAFVIWYVFLGATLISAMLFAVSVVVIACPCALGLATPTALMVGTARSAKMGVLIKNGEVLEEVSDIDTVVFDKTGTITVGKPQVTDIVGDQNKVLTIAASLENNSEHPLATAVVKKAKENNISLANVKNFAAIEGRGVKANYDNQEAFVGSERLLEDISISQEMKDQAAKLQKEAKTVVYVGLGQEIIGLIAIQDVPKASSKAAIAELKKRGLKTVMLTGDNENVAQAIGKEVGIDQVIAGVLPTEKAAEIKKLQDSGRTVAFVGDGINDAPALSTANVGIAMGSGTDIAIESGGIVLVQNDLMGVVRALEISKKTFNRIKLNLFWALIYNTIGIPIAACLFMGLGLTLSPELAGLAMAFSSVSVVTSSLLLNKTKIAGATA
>NZ_CP047142.1|WP_065990163.1|2114484_2114790_-|helix-turn-helix-domain-containing-protein
MVRYYLTNNQGQTEVAARFNINPSQVYSWTHKFNEEGIAGLKPNQKGRPRKMPKKTKHIKKRAQKIELSEKEKYEEKILQQEAELERLRIENLILKKVAAK
>NZ_CP047142.1|WP_141685544.1|2114844_2114994_-|transposase
MTKYSTELKIEVVSKYLNHVNSLLGLEKEYDIPNYQIFRWVKLAQEQGI
>NZ_CP047142.1|WP_065990161.1|2115090_2115546_-|hypothetical-protein
MNETIAIVVFVLIMMYIEIKDSKKIKIKARTNYVRMGMAIVISISSAVIFWPNNLPQQLELLTISTLILFFGFVPEGLGREQVIKVGTLDGDYNRYEKIELESEDKKNRFTRVSFFIRKNNATSLVVTGDKNKVFDYLNQAISDSDKVQFR
>NZ_CP047142.1|WP_013642600.1|2115572_2116718_-|galactonate-dehydratase
MKISDFVIYKVKPRWIFIKINTDEGISGWGEMVSGTKTETVVAGAKEMANRIIGKNPFEIERIWQRLHRSFFRGGPINGTIISGIEMALWDIKGKALGVPVYELLGGAARDRIKVYSWIGGDRPSDVVEMAQQRWDKGFRAVKMNATSELHYIDSLEKVDAAVERVASIRDKFGDAMSIGIDFHGRVHKPMAKVLAKALEPYHPMFIEEPVLPENWESFSTIANEVSTPIATGERLYTRWQFKRLFQQGAVDIVQPDISLCGGLLEERKIAAMAEAYDMAVAPHAPYGPVALAATFQVDACTPNMFIQEQSLGIHYNQGFDLLDFVKNKEIFQYKDSFVGLPTKPGLGIEMDEDKIKDVAQQGLVWTNPAWENYDGTIAEW
>NZ_CP047142.1|WP_065990160.1|2116719_2118147_-|PTS-galactitol-transporter-subunit-IIC
MWTQIGKGFMDGFQFIINCGPTVMLPIIITIVGLIFGLKITSAFKAGLTLGIGFAGIKLVLDFMTTNIGPAAKAMVERTHVHLDALDVGWGSIAAVTWASPIIAILIFVILAINIVLLILKATHTLDVDIWNYHHMAIVGIMVFFVTHNVFLGVGAAAVMAILTFKMSDWSQPMVEKFFNMPGVSLPTVSALSSLVIAVPLNWLLDKIPFFRKSKFSIRDAQKYLGFFGDSMIMGLLIGLVIGILAGYNLQQVLQLGVSMSAVLVLIPKMTAMFMEGLMPISESAQKWSQKKFKGRKLFIGLDAAVIVGNPDVITTALIIIPLTIAMAIVLPGNRVLPFADLAVVPFRVALVVALTNGNLLKNIVIGLVVTASLLWCGSATSPVLTAIAKSVGIKLSIGGSLLISSFAATAMLQSFIVYFAFTFHPLISVPILLLAIAGIWYYYDKIKHINKNAEDEEAALQKEQEEAKKLGDIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	NZ_CP015497	Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence	7431-7463	1	0.97
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP031836	Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence	162910-162941	2	0.938
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	176242-176273	2	0.938
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	NC_002102	Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence	259-291	2	0.939
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NC_019782	Lactobacillus phage AQ113, complete genome	7381-7412	2	0.938
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NC_019782	Lactobacillus phage AQ113, complete genome	7381-7413	2	0.939
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP031836	Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence	140072-140103	3	0.906
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP031836	Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence	151491-151522	3	0.906
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	141977-142008	3	0.906
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	153403-153434	3	0.906
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP020458	Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence	164823-164854	3	0.906
NZ_CP047142_2	2.22\|881482\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881482-881514	33	MN830256	Lactobacillus phage JNU_P7, complete genome	36107-36139	3	0.909
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP031177	Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_C, complete sequence	6281-6312	4	0.875
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	NZ_CP027195	Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence	22174-22205	5	0.844
NZ_CP047142_2	2.7\|880567\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	880567-880599	33	MN693682	Marine virus AFVG_250M534, complete genome	25442-25474	6	0.818
NZ_CP047142_2	2.19\|881299\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881299-881331	33	MK448389	Streptococcus satellite phage Javan260, complete genome	3640-3672	6	0.818
NZ_CP047142_2	2.10\|880750\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	880750-880782	33	NZ_CP026738	Bacillus megaterium strain YC4-R4 plasmid unnamed2	134661-134693	7	0.788
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	177819-177850	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NC_041925	Proteus phage VB_PmiS-Isfahan, complete genome	15334-15365	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP024778	Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence	7157-7188	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP024778	Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence	21532-21563	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP041078	Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence	14120-14151	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP041078	Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence	28495-28526	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	81981-82012	7	0.781
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	123566-123597	7	0.781
NZ_CP047142_5	5.7\|965746\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965746-965778	33	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	159485-159517	7	0.788
NZ_CP047142_5	5.7\|965746\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965746-965778	33	MH494197	Escherichia phage CMSTMSU, complete genome	339786-339818	7	0.788
NZ_CP047142_2	2.2\|880568\|32\|NZ_CP047142\|PILER-CR	880568-880599	32	MN693682	Marine virus AFVG_250M534, complete genome	25443-25474	8	0.75
NZ_CP047142_2	2.5\|880751\|32\|NZ_CP047142\|PILER-CR	880751-880782	32	NZ_CP038514	Aeromonas sp. 2692-1 plasmid unnamed, complete sequence	5617-5648	8	0.75
NZ_CP047142_2	2.10\|880750\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	880750-880782	33	NZ_CP038514	Aeromonas sp. 2692-1 plasmid unnamed, complete sequence	5616-5648	8	0.758
NZ_CP047142_2	2.15\|881055\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881055-881087	33	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	170797-170829	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	MN716856	Yersinia phage vB_YepM_ZN18, complete genome	114547-114579	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	MN580668	Salmonella phage pSe_SNUABM_01, complete genome	61269-61301	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	MK886800	Escherichia phage EcNP1, complete genome	37526-37558	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	KF925357	Escherichia phage HY01, complete genome	58868-58900	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	KR233165	Escherichia phage PEC04, complete genome	10395-10427	8	0.758
NZ_CP047142_2	2.21\|881421\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881421-881453	33	MH051916	Enterobacteria phage vB_EcoM_IME340, complete genome	109730-109762	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013448	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S29-C69	9016-9048	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013447	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S28-C59	7146-7178	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013452	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S44-C68	18554-18586	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	GU943028	Uncultured phage MedDCM-OCT-S06-C1041 genomic sequence	4126-4158	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013739	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C66A-MedDCM-OCT-S25-C224, * SEQUENCING IN PROGRESS *	5078-5110	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	GU943020	Uncultured phage MedDCM-OCT-S04-C64 genomic sequence	7035-7067	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013451	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S40-C72	858-890	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013446	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S24-C64	28763-28795	8	0.758
NZ_CP047142_4	4.1\|919644\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	919644-919676	33	AP013740	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C66A-MedDCM-OCT-S42-C239, * SEQUENCING IN PROGRESS *	1597-1629	8	0.758
NZ_CP047142_5	5.1\|965686\|32\|NZ_CP047142\|PILER-CR	965686-965717	32	NZ_KU896918	Lactobacillus plantarum strain A-1 plasmid pA1_ASM1, complete sequence	4268-4299	8	0.75
NZ_CP047142_5	5.2\|965747\|32\|NZ_CP047142\|PILER-CR	965747-965778	32	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	159486-159517	8	0.75
NZ_CP047142_5	5.2\|965747\|32\|NZ_CP047142\|PILER-CR	965747-965778	32	MH494197	Escherichia phage CMSTMSU, complete genome	339787-339818	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	MH191398	Erwinia phage Faunus, complete genome	45973-46004	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	MG592570	Vibrio phage 1.199.B._10N.286.55.C10, partial genome	6222-6253	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	NC_047764	Lactobacillus phage P1, complete genome	64958-64989	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	MG592569	Vibrio phage 1.199.A._10N.286.55.C10, partial genome	6222-6253	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	KY381600	Lactobacillus phage P2, complete genome	68530-68561	8	0.75
NZ_CP047142_5	5.3\|965808\|32\|NZ_CP047142\|PILER-CR	965808-965839	32	MG592608	Vibrio phage 1.243.O._10N.261.54.B5, partial genome	6007-6038	8	0.75
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NC_003905	Proteus vulgaris plasmid Rts1 DNA, complete sequence	51552-51583	8	0.75
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_CP028385	Providencia heimbachae strain 99101 plasmid unnamed, complete sequence	228009-228040	8	0.75
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	226-257	8	0.75
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_LR134417	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8	41787-41818	8	0.75
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	177818-177850	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NC_041925	Proteus phage VB_PmiS-Isfahan, complete genome	15334-15366	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NZ_CP024778	Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence	7156-7188	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NZ_CP024778	Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence	21531-21563	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NZ_CP041078	Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence	14119-14151	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	NZ_CP041078	Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence	28494-28526	8	0.758
NZ_CP047142_5	5.8\|965807\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965807-965839	33	MH191398	Erwinia phage Faunus, complete genome	45973-46005	8	0.758
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	226-258	8	0.758
NZ_CP047142_1	1.1\|278871\|32\|NZ_CP047142\|CRISPRCasFinder	278871-278902	32	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	136454-136485	9	0.719
NZ_CP047142_2	2.5\|880751\|32\|NZ_CP047142\|PILER-CR	880751-880782	32	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	111252-111283	9	0.719
NZ_CP047142_2	2.5\|880751\|32\|NZ_CP047142\|PILER-CR	880751-880782	32	NZ_CP026738	Bacillus megaterium strain YC4-R4 plasmid unnamed2	134661-134692	9	0.719
NZ_CP047142_2	2.17\|881177\|33\|NZ_CP047142\|CRISPRCasFinder,CRT,PILER-CR	881177-881209	33	KT997827	Uncultured Mediterranean phage uvDeep-CGR0-KM15-C219, complete genome	1499-1531	9	0.727
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	170689-170720	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	561100-561131	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_CP017198	Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-1, complete genome	30757-30788	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	15286-15317	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	FR671407	Streptococcus phage 34117	36398-36429	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	MK448904	Streptococcus phage Javan316, complete genome	1208-1239	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KY065505	Streptococcus phage IPP69, complete genome	1208-1239	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337367	Streptococcus phage phiARI0826b, partial genome	32744-32775	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337344	Streptococcus phage phiARI0274b, partial genome	33710-33741	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NC_024361	Streptococcus phage DCC1738, complete sequence	37154-37185	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337359	Streptococcus phage phiARI0468b-3, partial genome	30682-30713	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337354	Streptococcus phage phiARI0462, complete genome	39244-39275	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	FR671410	Streptococcus phage 8140	34652-34683	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KY065456	Streptococcus phage IPP15, complete genome	1208-1239	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337345	Streptococcus phage phiARI0285-1, partial genome	32168-32199	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NC_024370	Streptococcus phage IC1, complete sequence	38727-38758	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	FR671405	Streptococcus phage V22	35921-35952	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NC_024357	Streptococcus phage K13, complete sequence	38122-38153	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337351	Streptococcus phage phiARI0455b, partial genome	31391-31422	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	NC_031920	Streptococcus phage phiARI0004, complete genome	39774-39805	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KY065500	Streptococcus phage IPP64, complete genome	1208-1239	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337369	Streptococcus phage phiARI0831b, partial genome	29798-29829	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337362	Streptococcus phage phiARI0598b, partial genome	34534-34565	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KT337340	Streptococcus phage phiARI0031, complete genome	40633-40664	9	0.719
NZ_CP047142_5	5.5\|965930\|32\|NZ_CP047142\|PILER-CR	965930-965961	32	KY794642	Staphylococcus phage vB_Sau_Clo6, complete genome	53802-53833	9	0.719
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	FR671407	Streptococcus phage 34117	36397-36429	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	MK448904	Streptococcus phage Javan316, complete genome	1208-1240	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KY065505	Streptococcus phage IPP69, complete genome	1208-1240	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337367	Streptococcus phage phiARI0826b, partial genome	32743-32775	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337344	Streptococcus phage phiARI0274b, partial genome	33709-33741	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NC_024361	Streptococcus phage DCC1738, complete sequence	37153-37185	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337359	Streptococcus phage phiARI0468b-3, partial genome	30681-30713	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337354	Streptococcus phage phiARI0462, complete genome	39243-39275	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	FR671410	Streptococcus phage 8140	34651-34683	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KY065456	Streptococcus phage IPP15, complete genome	1208-1240	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337345	Streptococcus phage phiARI0285-1, partial genome	32167-32199	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NC_024370	Streptococcus phage IC1, complete sequence	38726-38758	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	FR671405	Streptococcus phage V22	35920-35952	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NC_024357	Streptococcus phage K13, complete sequence	38121-38153	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337351	Streptococcus phage phiARI0455b, partial genome	31390-31422	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NC_031920	Streptococcus phage phiARI0004, complete genome	39773-39805	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KY065500	Streptococcus phage IPP64, complete genome	1208-1240	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337369	Streptococcus phage phiARI0831b, partial genome	29797-29829	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337362	Streptococcus phage phiARI0598b, partial genome	34533-34565	9	0.727
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	KT337340	Streptococcus phage phiARI0031, complete genome	40632-40664	9	0.727
NZ_CP047142_2	2.10\|880750\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	880750-880782	33	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	111251-111283	10	0.697
NZ_CP047142_3	3.4\|916766\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	916766-916798	33	MN693308	Marine virus AFVG_25M475, complete genome	11802-11834	10	0.697
NZ_CP047142_3	3.4\|916766\|33\|NZ_CP047142\|PILER-CR,CRISPRCasFinder,CRT	916766-916798	33	MN693437	Marine virus AFVG_25M476, complete genome	11795-11827	10	0.697
NZ_CP047142_5	5.2\|965747\|32\|NZ_CP047142\|PILER-CR	965747-965778	32	NC_014663	Acinetobacter phage Acj9, complete genome	61727-61758	10	0.688
NZ_CP047142_5	5.7\|965746\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965746-965778	33	NC_014663	Acinetobacter phage Acj9, complete genome	61727-61759	10	0.697
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	170689-170721	10	0.697
NZ_CP047142_5	5.10\|965929\|33\|NZ_CP047142\|CRISPRCasFinder,CRT	965929-965961	33	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	561099-561131	10	0.697
NZ_CP047142_2	2.2\|880568\|32\|NZ_CP047142\|PILER-CR	880568-880599	32	NZ_CP053580	Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence	44242-44273	11	0.656
NZ_CP047142_2	2.2\|880568\|32\|NZ_CP047142\|PILER-CR	880568-880599	32	NZ_CP054717	Salmonella enterica strain 85-0120 plasmid unnamed1, complete sequence	128859-128890	11	0.656

1. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015497 (Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence) position: , mismatch: 1, identity: 0.97

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
ctaacaacgctcaaacgttaaatttggttgata	Protospacer
*******.*************************

2. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.938

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
cgggctctttgtcaaacaccctaaagtataaa	Protospacer
* *****************************.

3. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 2, identity: 0.938

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
cgggctctttgtcaaacaccctaaagtataaa	Protospacer
* *****************************.

4. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to NC_002102 (Lactobacillus helveticus DSM 20075 plasmid pLH1, complete sequence) position: , mismatch: 2, identity: 0.939

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
ctaacaacgcacaaacgttaaatttggttgata	Protospacer
*******.** **********************

5. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 2, identity: 0.938

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
cttcaattgctttcttagcttcggcaattgta	Protospacer
********.*************.*********

6. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 2, identity: 0.939

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
tcttcaattgctttcttagcttcggcaattgta	Protospacer
*********.*************.*********

7. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.906

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
aaggctctttgtcaaacaccctaaagtataaa	Protospacer
  *****************************.

8. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.906

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
aaggctctttgtcaaacaccctaaagtataaa	Protospacer
  *****************************.

9. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 3, identity: 0.906

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
aaggctctttgtcaaacaccctaaagtataaa	Protospacer
  *****************************.

10. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 3, identity: 0.906

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
aaggctctttgtcaaacaccctaaagtataaa	Protospacer
  *****************************.

11. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 3, identity: 0.906

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
aaggctctttgtcaaacaccctaaagtataaa	Protospacer
  *****************************.

12. spacer 2.22|881482|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MN830256 (Lactobacillus phage JNU_P7, complete genome) position: , mismatch: 3, identity: 0.909

ttattgacgttgacgaaaagacagaaaagaaat	CRISPR spacer
tcattgatgttgatgaaaagacagaaaagaaat	Protospacer
*.*****.*****.*******************

13. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP031177 (Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_C, complete sequence) position: , mismatch: 4, identity: 0.875

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
atggctctttgtcaaacatcctaaagtaagag	Protospacer
 *****************.********* .**

14. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to NZ_CP027195 (Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence) position: , mismatch: 5, identity: 0.844

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
acggctctttgtcaaacatcctaaagtaagag	Protospacer
 .****************.********* .**

15. spacer 2.7|880567|33|NZ_CP047142|CRISPRCasFinder,CRT matches to MN693682 (Marine virus AFVG_250M534, complete genome) position: , mismatch: 6, identity: 0.818

cgatt--cagaacgttgcaataatcgtgcaggtgc	CRISPR spacer
--attgacggaacgttgcagcaatcgtgcaggtgg	Protospacer
  ***  *.**********..*************

16. spacer 2.19|881299|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MK448389 (Streptococcus satellite phage Javan260, complete genome) position: , mismatch: 6, identity: 0.818

cttgtcaattggcgtagttgcttcatcgtaacg	CRISPR spacer
cctgtcacttggcgtagttgcttaatcgtttca	Protospacer
*.***** *************** *****  *.

17. spacer 2.10|880750|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP026738 (Bacillus megaterium strain YC4-R4 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

-taggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
ataag-ttagctatttctaaaggtgacatatcat	Protospacer
 **.* *..**************** ** ****

18. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
tttcaattgcttttttagcttcagcaacattc	Protospacer
.*******.****.*************.  *

19. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NC_041925 (Proteus phage VB_PmiS-Isfahan, complete genome) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
cttcaattgctttcttaccttcagcagtaccc	Protospacer
********.******** ********.*  .

20. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP024778 (Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
catcaattgctttcttagcttcaccagtaggt	Protospacer
* ******.************** **.* *

21. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP024778 (Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
catcaattgctttcttagcttcaccagtaggt	Protospacer
* ******.************** **.* *

22. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP041078 (Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
catcaattgctttcttagcttcaccagtaggt	Protospacer
* ******.************** **.* *

23. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP041078 (Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
catcaattgctttcttagcttcaccagtaggt	Protospacer
* ******.************** **.* *

24. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
tttcaattatattcttagcttcagtatctgca	Protospacer
.********. *************.* .**.*

25. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
tttcaattatattcttagcttcagtatctgca	Protospacer
.********. *************.* .**.*

26. spacer 5.7|965746|33|NZ_CP047142|CRISPRCasFinder,CRT matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.788

----tgcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
gcaatgc----tgatggtgtagcaattaacaataaca	Protospacer
    ***    ****************.**** ***

27. spacer 5.7|965746|33|NZ_CP047142|CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.788

----tgcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
gcaatgc----tgatggtgtagcaattaacaataaca	Protospacer
    ***    ****************.**** ***

28. spacer 2.2|880568|32|NZ_CP047142|PILER-CR matches to MN693682 (Marine virus AFVG_250M534, complete genome) position: , mismatch: 8, identity: 0.75

gattcagaacgttgcaataatcgtgcaggtgc	CRISPR spacer
ttgacggaacgttgcagcaatcgtgcaggtgg	Protospacer
    *.**********..*************

29. spacer 2.5|880751|32|NZ_CP047142|PILER-CR matches to NZ_CP038514 (Aeromonas sp. 2692-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
gatagaggctatatctaaagatgccaaatcaa	Protospacer
..    ****** *******.***********

30. spacer 2.10|880750|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP038514 (Aeromonas sp. 2692-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

taggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
tgatagaggctatatctaaagatgccaaatcaa	Protospacer
*..    ****** *******.***********

31. spacer 2.15|881055|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.758

tgttcccattactttctcctttaaaaattgcta	CRISPR spacer
ctttccccttactttctccttcaaaaaatagaa	Protospacer
. ***** *************.***** *.  *

32. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MN716856 (Yersinia phage vB_YepM_ZN18, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

33. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MN580668 (Salmonella phage pSe_SNUABM_01, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

34. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MK886800 (Escherichia phage EcNP1, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

35. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to KF925357 (Escherichia phage HY01, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

36. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to KR233165 (Escherichia phage PEC04, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

37. spacer 2.21|881421|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to MH051916 (Enterobacteria phage vB_EcoM_IME340, complete genome) position: , mismatch: 8, identity: 0.758

tgttgtttacgatttccaacagttcattaatca	CRISPR spacer
agtcatttactatttccaacagtttattatttt	Protospacer
 **..***** *************.**** *.

38. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013448 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S29-C69) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

39. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013447 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S28-C59) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

40. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013452 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S44-C68) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

41. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to GU943028 (Uncultured phage MedDCM-OCT-S06-C1041 genomic sequence) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

42. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013739 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C66A-MedDCM-OCT-S25-C224, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

43. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to GU943020 (Uncultured phage MedDCM-OCT-S04-C64 genomic sequence) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

44. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013451 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S40-C72) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

45. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013446 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C66A-MedDCM-OCT-S24-C64) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

46. spacer 4.1|919644|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to AP013740 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C66A-MedDCM-OCT-S42-C239, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.758

ctaacaatgctcaaacgttaaatttggttgata	CRISPR spacer
aacaaaatgctcaaattttaaatttggttgagc	Protospacer
   * **********. **************

47. spacer 5.1|965686|32|NZ_CP047142|PILER-CR matches to NZ_KU896918 (Lactobacillus plantarum strain A-1 plasmid pA1_ASM1, complete sequence) position: , mismatch: 8, identity: 0.75

ggaagcttggtgttgactatattcccaatagt	CRISPR spacer
atacggttggtgttgatgatattcccaatgtt	Protospacer
. * * **********. ***********. *

48. spacer 5.2|965747|32|NZ_CP047142|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 8, identity: 0.75

gcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
caatgctgatggtgtagcaattaacaataaca	Protospacer
   *  ****************.**** ***

49. spacer 5.2|965747|32|NZ_CP047142|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 8, identity: 0.75

gcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
caatgctgatggtgtagcaattaacaataaca	Protospacer
   *  ****************.**** ***

50. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to MH191398 (Erwinia phage Faunus, complete genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
cggcaattgctttcttaacttcagcaaactca	Protospacer
*  *****.********.********* . .*

51. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to MG592570 (Vibrio phage 1.199.B._10N.286.55.C10, partial genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
agtcttttagtttcttagcttcatcaattatc	Protospacer
  **  *** ************* *****.*

52. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to NC_047764 (Lactobacillus phage P1, complete genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
cttcaatctctttcttagcttcactatatttc	Protospacer
*******. ************** .*  * *

53. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to MG592569 (Vibrio phage 1.199.A._10N.286.55.C10, partial genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
agtcttttagtttcttagcttcatcaattatc	Protospacer
  **  *** ************* *****.*

54. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to KY381600 (Lactobacillus phage P2, complete genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
cttcaatctctttcttagcttcactatatttc	Protospacer
*******. ************** .*  * *

55. spacer 5.3|965808|32|NZ_CP047142|PILER-CR matches to MG592608 (Vibrio phage 1.243.O._10N.261.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

cttcaattactttcttagcttcagcaattgta	CRISPR spacer
agtcttttagtttcttagcttcatcaattatc	Protospacer
  **  *** ************* *****.*

56. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NC_003905 (Proteus vulgaris plasmid Rts1 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
gaactacaaaaattaaatacagtacgaaaaat	Protospacer
.**  * .****** *********.******

57. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_CP028385 (Providencia heimbachae strain 99101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
gaactacaaaaattaaatacagtacgaaaaat	Protospacer
.**  * .****** *********.******

58. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaataaagaaaatttaaaacagtttttcaatt	Protospacer
*** ************* ***** *   **

59. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_LR134417 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 8) position: , mismatch: 8, identity: 0.75

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaggaaaatttaattcagttattgaaga	Protospacer
******.*********** ****    .**.*

60. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
atttcaattgcttttttagcttcagcaacattc	Protospacer
 .*******.****.*************.  *

61. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_041925 (Proteus phage VB_PmiS-Isfahan, complete genome) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
gcttcaattgctttcttaccttcagcagtaccc	Protospacer
 ********.******** ********.*  .

62. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP024778 (Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
gcatcaattgctttcttagcttcaccagtaggt	Protospacer
 * ******.************** **.* *

63. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP024778 (Bacillus thuringiensis LM1212 plasmid pLM5, complete sequence) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
gcatcaattgctttcttagcttcaccagtaggt	Protospacer
 * ******.************** **.* *

64. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP041078 (Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
gcatcaattgctttcttagcttcaccagtaggt	Protospacer
 * ******.************** **.* *

65. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP041078 (Bacillus tropicus strain LM1212-W3 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
gcatcaattgctttcttagcttcaccagtaggt	Protospacer
 * ******.************** **.* *

66. spacer 5.8|965807|33|NZ_CP047142|CRISPRCasFinder,CRT matches to MH191398 (Erwinia phage Faunus, complete genome) position: , mismatch: 8, identity: 0.758

tcttcaattactttcttagcttcagcaattgta	CRISPR spacer
tcggcaattgctttcttaacttcagcaaactca	Protospacer
**  *****.********.********* . .*

67. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaataaagaaaatttaaaacagtttttcaatt	Protospacer
**** ************* ***** *   **

68. spacer 1.1|278871|32|NZ_CP047142|CRISPRCasFinder matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggctctttgtcaaacaccctaaagtataag	CRISPR spacer
gctgctctttgtcatacaccataaagtgcaca	Protospacer
 . *********** ***** ******..* .

69. spacer 2.5|880751|32|NZ_CP047142|PILER-CR matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 9, identity: 0.719

aggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
ttccgtagctatttttaaaggttccaaatcag	Protospacer
   * ..*******.******* ********.

70. spacer 2.5|880751|32|NZ_CP047142|PILER-CR matches to NZ_CP026738 (Bacillus megaterium strain YC4-R4 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

aggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
taagttagctatttctaaaggtgacatatcat	Protospacer
 .. *..**************** ** ****

71. spacer 2.17|881177|33|NZ_CP047142|CRISPRCasFinder,CRT,PILER-CR matches to KT997827 (Uncultured Mediterranean phage uvDeep-CGR0-KM15-C219, complete genome) position: , mismatch: 9, identity: 0.727

tagctcggaaaaacgacaagcttaaaggcaaag	CRISPR spacer
gacgggtgaaaaaggacaagctaaaaggcaatg	Protospacer
 *     ****** ******** ******** *

72. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aagaaaagaaaattttatacagtacaattgct	Protospacer
**.************ ********..*  .

73. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aagaaaagaaaattttatacagtacaattgct	Protospacer
**.************ ********..*  .

74. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_CP017198 (Leuconostoc gelidum subsp. gasicomitatum strain TMW 2.1619 plasmid pL21619-1, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
caaaaaagaaaatttaaaacattaaccagtga	Protospacer
 **************** *** **   *. .*

75. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
gaaaaaagaaaatttaattcattaaaacatgc	Protospacer
.***************** ** ** .* * .

76. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to FR671407 (Streptococcus phage 34117) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

77. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to MK448904 (Streptococcus phage Javan316, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

78. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KY065505 (Streptococcus phage IPP69, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

79. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337367 (Streptococcus phage phiARI0826b, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

80. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337344 (Streptococcus phage phiARI0274b, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

81. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NC_024361 (Streptococcus phage DCC1738, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

82. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337359 (Streptococcus phage phiARI0468b-3, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

83. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337354 (Streptococcus phage phiARI0462, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

84. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to FR671410 (Streptococcus phage 8140) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

85. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KY065456 (Streptococcus phage IPP15, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

86. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337345 (Streptococcus phage phiARI0285-1, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

87. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NC_024370 (Streptococcus phage IC1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

88. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to FR671405 (Streptococcus phage V22) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

89. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NC_024357 (Streptococcus phage K13, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

90. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337351 (Streptococcus phage phiARI0455b, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

91. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to NC_031920 (Streptococcus phage phiARI0004, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

92. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KY065500 (Streptococcus phage IPP64, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

93. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337369 (Streptococcus phage phiARI0831b, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

94. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337362 (Streptococcus phage phiARI0598b, partial genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

95. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KT337340 (Streptococcus phage phiARI0031, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatttgacacagttctagtcta	Protospacer
***************.*.***** . *.   *

96. spacer 5.5|965930|32|NZ_CP047142|PILER-CR matches to KY794642 (Staphylococcus phage vB_Sau_Clo6, complete genome) position: , mismatch: 9, identity: 0.719

aaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
aaaaaaagaaaatctattacagttcatagatt	Protospacer
*************.** ****** .. *.*

97. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to FR671407 (Streptococcus phage 34117) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

98. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to MK448904 (Streptococcus phage Javan316, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

99. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KY065505 (Streptococcus phage IPP69, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

100. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337367 (Streptococcus phage phiARI0826b, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

101. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337344 (Streptococcus phage phiARI0274b, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

102. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_024361 (Streptococcus phage DCC1738, complete sequence) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

103. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337359 (Streptococcus phage phiARI0468b-3, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

104. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337354 (Streptococcus phage phiARI0462, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

105. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to FR671410 (Streptococcus phage 8140) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

106. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KY065456 (Streptococcus phage IPP15, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

107. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337345 (Streptococcus phage phiARI0285-1, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

108. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_024370 (Streptococcus phage IC1, complete sequence) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

109. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to FR671405 (Streptococcus phage V22) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

110. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_024357 (Streptococcus phage K13, complete sequence) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

111. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337351 (Streptococcus phage phiARI0455b, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

112. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_031920 (Streptococcus phage phiARI0004, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

113. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KY065500 (Streptococcus phage IPP64, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

114. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337369 (Streptococcus phage phiARI0831b, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

115. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337362 (Streptococcus phage phiARI0598b, partial genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

116. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to KT337340 (Streptococcus phage phiARI0031, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
taaaaaaagaaaatttgacacagttctagtcta	Protospacer
****************.*.***** . *.   *

117. spacer 2.10|880750|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 10, identity: 0.697

taggctcggctatttctaaaggtgccaaatcaa	CRISPR spacer
cttccgtagctatttttaaaggttccaaatcag	Protospacer
.   * ..*******.******* ********.

118. spacer 3.4|916766|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to MN693308 (Marine virus AFVG_25M475, complete genome) position: , mismatch: 10, identity: 0.697

ttaccggctgcatctactactttttcacctttc	CRISPR spacer
tctttagctacatcttctactttttcacctgct	Protospacer
*. ...***.***** ************** ..

119. spacer 3.4|916766|33|NZ_CP047142|PILER-CR,CRISPRCasFinder,CRT matches to MN693437 (Marine virus AFVG_25M476, complete genome) position: , mismatch: 10, identity: 0.697

ttaccggctgcatctactactttttcacctttc	CRISPR spacer
tctttagctacatcttctactttttcacctgct	Protospacer
*. ...***.***** ************** ..

120. spacer 5.2|965747|32|NZ_CP047142|PILER-CR matches to NC_014663 (Acinetobacter phage Acj9, complete genome) position: , mismatch: 10, identity: 0.688

gcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
tattcgtgatggtgtaccacttgacagcgctg	Protospacer
  ************** ** ******. . .

121. spacer 5.7|965746|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NC_014663 (Acinetobacter phage Acj9, complete genome) position: , mismatch: 10, identity: 0.697

tgcttcgtgatggtgtagcaattgacaaaaact	CRISPR spacer
ttattcgtgatggtgtaccacttgacagcgctg	Protospacer
*  ************** ** ******. . .

122. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 10, identity: 0.697

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
gaagaaaagaaaattttatacagtacaattgct	Protospacer
 **.************ ********..*  .

123. spacer 5.10|965929|33|NZ_CP047142|CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 10, identity: 0.697

taaaaaaagaaaatttaatacagtatgaaaaaa	CRISPR spacer
gaagaaaagaaaattttatacagtacaattgct	Protospacer
 **.************ ********..*  .

124. spacer 2.2|880568|32|NZ_CP047142|PILER-CR matches to NZ_CP053580 (Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gattcagaacgttgcaataatcgtgcaggtgc	CRISPR spacer
tgccgcattcgttgcaataagcgtccaggtgc	Protospacer
 ...  .  *********** *** *******

125. spacer 2.2|880568|32|NZ_CP047142|PILER-CR matches to NZ_CP054717 (Salmonella enterica strain 85-0120 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

gattcagaacgttgcaataatcgtgcaggtgc	CRISPR spacer
tgccgcattcgttgcaataagcgtccaggtgc	Protospacer
 ...  .  *********** *** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11761 : 77481

Streptococcus_phage(35.29%)

integrase,transposase

attL 13926:13944|attR 55797:55815

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065991185.1\|11761_12988_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	2.6e-93	47.4
WP_023487823.1\|13254_14253_+	hypothetical protein	NA	NA	NA	NA
13926:13944	attL	NA	NA	NA	NA
WP_065991173.1\|14390_15509_+	s-layer protein	NA	NA	NA	NA
WP_005721046.1\|15719_17741_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_005721048.1\|17752_18208_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_065991168.1\|18227_19619_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	6.8e-122	51.2
WP_013085593.1\|19797_20733_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061205006.1\|20842_21772_+	DegV family protein	NA	NA	NA	NA
WP_065990935.1\|21887_22766_+	ROK family protein	NA	NA	NA	NA
WP_005723606.1\|22913_23105_+	CsbD family protein	NA	NA	NA	NA
WP_005721061.1\|23155_23413_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_065990937.1\|23472_24702_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_061205003.1\|24799_25501_-	methyltransferase	G3MA03	Bacillus_virus	2.7e-18	42.6
WP_065990939.1\|26051_26723_+	hypothetical protein	NA	NA	NA	NA
WP_065990941.1\|26866_31582_+	DEAD/DEAH box helicase	A0A2H4UTW8	Bodo_saltans_virus	3.2e-46	27.2
WP_065990943.1\|31589_32318_-	hypothetical protein	NA	NA	NA	NA
WP_065990945.1\|32739_33231_+	hypothetical protein	NA	NA	NA	NA
WP_065990947.1\|33223_33760_+	hypothetical protein	NA	NA	NA	NA
WP_065990949.1\|33743_34520_+	AAA family ATPase	NA	NA	NA	NA
WP_065990951.1\|34633_35428_+	hypothetical protein	NA	NA	NA	NA
WP_065990953.1\|35420_35855_+	hypothetical protein	NA	NA	NA	NA
WP_161903459.1\|35880_36060_+	hypothetical protein	NA	NA	NA	NA
WP_065990957.1\|36122_37328_+\|integrase	site-specific integrase	A8ATC7	Listeria_phage	5.0e-12	26.7
WP_065990959.1\|38524_38851_-	hypothetical protein	NA	NA	NA	NA
WP_081307160.1\|38917_39640_+	hypothetical protein	NA	NA	NA	NA
WP_065990962.1\|40497_41565_+	peptidase	NA	NA	NA	NA
WP_065990965.1\|41663_42437_+	putative ABC transporter permease	NA	NA	NA	NA
WP_081036442.1\|43942_45250_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-43	47.0
WP_161903460.1\|46675_48436_-	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005729767.1\|48632_49667_+	AI-2E family transporter	NA	NA	NA	NA
WP_013085611.1\|49667_50240_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_005720623.1\|50273_50456_-	hypothetical protein	NA	NA	NA	NA
WP_013085613.1\|50639_51974_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_065991045.1\|52011_52488_-	hypothetical protein	D6PSS8	Lactobacillus_phage	4.5e-09	30.6
WP_005729771.1\|52471_52825_-	helix-turn-helix transcriptional regulator	M1PKY8	Streptococcus_phage	1.1e-07	32.7
WP_065991043.1\|53156_53474_+	helveticin	NA	NA	NA	NA
WP_065991185.1\|53662_54889_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	2.6e-93	47.4
WP_081307170.1\|55155_56097_+	hypothetical protein	NA	NA	NA	NA
55797:55815	attR	NA	NA	NA	NA
WP_065991134.1\|56194_57100_+	hypothetical protein	NA	NA	NA	NA
WP_065991130.1\|57212_57569_-	hypothetical protein	NA	NA	NA	NA
WP_065991129.1\|57905_58667_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.3e-13	27.6
WP_060463855.1\|58663_59560_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_065991128.1\|59556_60549_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065991127.1\|60831_62439_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	4.6e-21	31.3
WP_065991126.1\|62528_63341_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065991124.1\|63457_64165_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_023487857.1\|64305_65010_-	hypothetical protein	NA	NA	NA	NA
WP_023487858.1\|65046_65664_-	hypothetical protein	A0A0E3XCL7	Enterococcus_phage	4.2e-23	42.1
WP_023487859.1\|65877_66153_-	hypothetical protein	NA	NA	NA	NA
WP_061204991.1\|66168_66801_-	hypothetical protein	NA	NA	NA	NA
WP_065991123.1\|66986_67799_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_065991122.1\|67931_69857_+	TetM/TetW/TetO/TetS family tetracycline resistance ribosomal protection protein	A0A1S5SF82	Streptococcus_phage	2.8e-65	30.4
WP_065991143.1\|70054_70873_+	HAD family hydrolase	NA	NA	NA	NA
WP_005720611.1\|70942_71956_-	D-2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.3e-50	35.3
WP_005720610.1\|72312_72564_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_065991142.1\|72523_73063_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_065991141.1\|73617_74445_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.2e-97	63.1
WP_065991183.1\|75545_76169_+\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	5.9e-33	41.1
WP_013085970.1\|76152_77481_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	2.2e-61	39.3

DBSCAN-SWA_2

153055 : 204585

Lactobacillus_phage(15.38%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081307144.1\|153055_153325_+\|tRNA	tRNA-modifying protein	NA	NA	NA	NA
WP_065990530.1\|153374_156383_-	alpha-glucosidase	NA	NA	NA	NA
WP_065990528.1\|156536_157691_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_013085690.1\|159449_159746_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_013085691.1\|159747_160101_+	hypothetical protein	NA	NA	NA	NA
WP_065990526.1\|160322_161720_+	ATP-binding protein	NA	NA	NA	NA
WP_081307143.1\|161768_161960_+	hypothetical protein	NA	NA	NA	NA
WP_005721703.1\|162090_162567_-	nucleoside deoxyribosyltransferase	A0A0A7DMT2	Lactobacillus_phage	4.3e-60	68.8
WP_013085693.1\|162681_163179_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_057726812.1\|163196_164000_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_065990524.1\|164149_164644_+	universal stress protein	NA	NA	NA	NA
WP_035442974.1\|164993_165923_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005727467.1\|165951_166725_+	phosphonate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.1e-20	30.8
WP_065990523.1\|166724_167522_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_013085700.1\|167521_168334_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_065990522.1\|168388_168958_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_005724044.1\|169116_169602_+	hypothetical protein	NA	NA	NA	NA
WP_065990521.1\|169658_171056_+	serine/threonine protein phosphatase	A0A2P0ZKZ2	Lactobacillus_phage	1.4e-05	21.6
WP_065990520.1\|171183_173133_+	asparagine synthase (glutamine-hydrolyzing)	F2Y1H0	Organic_Lake_phycodnavirus	5.6e-21	26.7
WP_065990518.1\|173154_174438_+	carboxylate--amine ligase	NA	NA	NA	NA
WP_005718383.1\|174612_176820_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	5.9e-253	64.9
WP_065990517.1\|176819_177533_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	1.0e-49	56.4
WP_005721695.1\|177584_178163_+	DUF59 domain-containing protein	NA	NA	NA	NA
WP_005718386.1\|178155_179352_+	DUF438 domain-containing protein	NA	NA	NA	NA
WP_013085707.1\|179468_180686_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	8.5e-44	29.8
WP_065990516.1\|180766_182713_+	peptidase M13	E3T4I7	Cafeteria_roenbergensis_virus	5.5e-69	30.5
WP_057726953.1\|182881_184903_-	KUP/HAK/KT family potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	1.2e-63	34.0
WP_065990515.1\|185123_185558_-	hypothetical protein	NA	NA	NA	NA
WP_005721691.1\|185749_186829_+	hypothetical protein	NA	NA	NA	NA
WP_065990548.1\|186863_187103_+	hypothetical protein	NA	NA	NA	NA
WP_065991193.1\|187376_188426_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.1e-50	35.3
WP_065991084.1\|188444_188786_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_013085715.1\|188808_189084_-	hypothetical protein	NA	NA	NA	NA
WP_065991083.1\|189188_189605_-	hypothetical protein	NA	NA	NA	NA
WP_065991081.1\|189757_189973_+	DUF1659 domain-containing protein	NA	NA	NA	NA
WP_005724048.1\|190010_190283_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_065991079.1\|190807_192187_+	S-layer protein	NA	NA	NA	NA
WP_013085970.1\|192894_194223_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	2.2e-61	39.3
WP_065991183.1\|194206_194830_-\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	5.9e-33	41.1
WP_065990985.1\|194992_196192_+	transcriptional regulator	NA	NA	NA	NA
WP_041811130.1\|196348_196651_-	hypothetical protein	NA	NA	NA	NA
WP_155515509.1\|196955_197120_+	hypothetical protein	NA	NA	NA	NA
WP_013085721.1\|197309_197801_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_065990984.1\|198013_198883_-	hypothetical protein	NA	NA	NA	NA
WP_013085723.1\|199075_199969_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_065990982.1\|200806_202189_-	S-layer protein	NA	NA	NA	NA
WP_065990980.1\|202333_202807_+\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	1.9e-23	52.5
WP_089146280.1\|203178_204585_+\|transposase	ISLre2-like element ISLcr1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

495955 : 552543

Organic_Lake_phycodnavirus(18.18%)

tRNA,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161903462.1\|495955_496990_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.3e-41	33.3
WP_013086789.1\|497050_497950_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_065989735.1\|498009_499047_+	DUF871 domain-containing protein	NA	NA	NA	NA
WP_065989732.1\|499062_499908_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_065989731.1\|500233_501664_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_065989729.1\|501665_502682_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_065989728.1\|502681_504400_+	thiol reductant ABC exporter subunit CydD	F2Y302	Organic_Lake_phycodnavirus	6.2e-16	29.7
WP_065989727.1\|504389_506138_+	thiol reductant ABC exporter subunit CydC	F2Y2R6	Organic_Lake_phycodnavirus	6.1e-19	29.2
WP_065989726.1\|506147_506849_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_065989725.1\|506845_507835_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_061204952.1\|507894_508794_+	prenyltransferase	NA	NA	NA	NA
WP_013086779.1\|508808_510029_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_065989722.1\|510800_511724_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.3e-64	45.2
WP_065989720.1\|511766_512432_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_065989718.1\|512721_515136_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	67.4
WP_013086774.1\|515229_516876_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_005720802.1\|517263_517584_-	PspC domain-containing protein	NA	NA	NA	NA
WP_065989716.1\|517893_519195_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_005725666.1\|519197_520046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_065989714.1\|520171_520858_+	L,D-transpeptidase	NA	NA	NA	NA
WP_005720808.1\|521221_522907_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	3.5e-72	31.7
WP_023488638.1\|523017_523929_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_065989712.1\|523992_524529_+	NUDIX hydrolase	NA	NA	NA	NA
WP_065989711.1\|524808_525720_+	prenyltransferase	NA	NA	NA	NA
WP_065989710.1\|525788_526112_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_065989707.1\|526268_526556_+	hypothetical protein	NA	NA	NA	NA
WP_081307117.1\|527190_527883_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_013086765.1\|527884_528664_+	response regulator transcription factor	NA	NA	NA	NA
WP_013086764.1\|528882_529506_+\|bacteriocin	garvicin Q family class II bacteriocin	NA	NA	NA	NA
WP_005723493.1\|529539_529863_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_023488632.1\|529948_530581_+	hypothetical protein	NA	NA	NA	NA
WP_023488631.1\|530647_531202_+	hypothetical protein	NA	NA	NA	NA
WP_005725672.1\|531374_531878_+	MFS transporter	NA	NA	NA	NA
WP_065989703.1\|531998_533330_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	7.6e-62	38.7
WP_005726484.1\|534581_535691_+	ATP-binding protein	NA	NA	NA	NA
WP_065989702.1\|535687_536797_-	acyltransferase family protein	NA	NA	NA	NA
WP_005723485.1\|536893_537712_+	triphosphoribosyl-dephospho-CoA synthase	NA	NA	NA	NA
WP_054832836.1\|537849_538602_-	aquaporin family protein	M1GYI5	Paramecium_bursaria_Chlorella_virus	8.1e-21	31.7
WP_061204939.1\|539033_539639_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	2.5e-20	35.4
WP_081307115.1\|539655_542028_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	3.9e-125	31.5
WP_005718094.1\|542082_542940_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_065989699.1\|543027_545085_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_005718098.1\|545101_545452_+	YlbF family regulator	NA	NA	NA	NA
WP_065989697.1\|545460_546678_+	DNA repair exonuclease	NA	NA	NA	NA
WP_065989692.1\|546658_549154_+	AAA family ATPase	NA	NA	NA	NA
WP_065989690.1\|549146_550124_+	HD domain-containing protein	NA	NA	NA	NA
WP_013085784.1\|551928_552543_+\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	6.4e-56	53.3

DBSCAN-SWA_4

829352 : 905192

Streptococcus_phage(11.11%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043921381.1\|829352_830720_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.2e-31	29.1
WP_065991146.1\|830813_832565_-	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065991148.1\|833109_833952_-	cell surface protein	NA	NA	NA	NA
WP_141685584.1\|834127_834955_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_161903463.1\|835087_837724_+	hypothetical protein	NA	NA	NA	NA
WP_025006393.1\|838083_838434_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_065989741.1\|838498_838729_+\|transposase	transposase	NA	NA	NA	NA
WP_065989743.1\|840060_841290_-	MFS transporter	NA	NA	NA	NA
WP_065989745.1\|843094_843874_-	hypothetical protein	NA	NA	NA	NA
WP_054832698.1\|844010_844343_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_065989746.1\|844345_844768_+	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	7.0e-30	42.0
WP_065989752.1\|845428_846604_-	class I SAM-dependent methyltransferase	A0A2K9L0U7	Tupanvirus	3.0e-46	33.7
WP_057726517.1\|846727_847342_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_065989753.1\|847406_848438_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_065989755.1\|848600_849374_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_013086499.1\|849407_850433_+	elongation factor Ts	NA	NA	NA	NA
WP_005719286.1\|850577_851303_+	UMP kinase	NA	NA	NA	NA
WP_005719284.1\|851302_851860_+	ribosome recycling factor	NA	NA	NA	NA
WP_057726514.1\|851862_852597_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.5e-22	39.0
WP_023488787.1\|852599_853415_+	phosphatidate cytidylyltransferase	A0A2K9L268	Tupanvirus	8.9e-05	30.8
WP_065989757.1\|853427_854684_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_065989759.1\|854711_856409_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_065989763.1\|856414_860725_+	PolC-type DNA polymerase III	Q8W6C3	Saccharomonospora_phage	3.3e-26	22.1
WP_005722018.1\|860835_861312_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_065989765.1\|861331_862525_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_023488782.1\|862555_862831_+	YlxR family protein	NA	NA	NA	NA
WP_005719268.1\|862833_863145_+	50S ribosomal protein L7ae	NA	NA	NA	NA
WP_061204775.1\|863149_865753_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.5e-21	24.9
WP_013086491.1\|865772_866138_+	ribosome-binding factor A	NA	NA	NA	NA
WP_065989767.1\|866193_867087_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_061204774.1\|867092_868043_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_005719259.1\|868180_869230_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_005719257.1\|869242_869827_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_013086488.1\|869843_871697_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.0e-141	48.7
WP_065989769.1\|871779_872931_+	molecular chaperone DnaJ	Q8QNB4	Ectocarpus_siliculosus_virus	1.4e-24	25.1
WP_065989793.1\|872983_873445_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_065989771.1\|873552_875391_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.3e-19	23.9
WP_057726507.1\|875392_876076_+	class A sortase	NA	NA	NA	NA
WP_065989773.1\|876196_878470_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.1e-72	34.6
WP_065989775.1\|878574_879102_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.5e-25	40.7
WP_081307118.1\|879184_879916_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065989784.1\|879983_880289_+	hypothetical protein	NA	NA	NA	NA
WP_065989795.1\|881953_883273_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	5.8e-131	55.1
WP_065989786.1\|883317_884409_-	DUF871 domain-containing protein	NA	NA	NA	NA
WP_065989788.1\|885727_888001_-	HAD-IC family P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	9.9e-46	27.6
WP_005723104.1\|888129_888978_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_081307119.1\|890292_891453_+	peptide transporter	NA	NA	NA	NA
WP_013086469.1\|891466_892003_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA
WP_065989789.1\|892118_893285_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_081307120.1\|893451_894069_+	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA
WP_005719232.1\|894158_894707_+	hypothetical protein	NA	NA	NA	NA
WP_065989791.1\|894802_895465_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_065991187.1\|895881_896928_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.2e-47	34.6
WP_060462067.1\|897241_898261_+	hypothetical protein	NA	NA	NA	NA
WP_065991051.1\|898434_900033_+	ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	6.6e-12	23.7
WP_065991049.1\|900029_901613_+	ABC transporter ATP-binding protein	A0A1V0SGN0	Hokovirus	1.3e-12	28.8
WP_057726910.1\|901656_902376_-	hypothetical protein	NA	NA	NA	NA
WP_005719224.1\|902764_903004_-	galactose-6-phosphate isomerase	NA	NA	NA	NA
WP_019543803.1\|903636_904131_-	lincosamide nucleotidyltransferase Lnu(C)	A0A2K5B286	Erysipelothrix_phage	1.0e-48	54.9
WP_065991153.1\|904154_905192_-\|transposase	IS1595-like element ISSag10 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1037672 : 1085987

Staphylococcus_phage(20.0%)

integrase,protease,transposase

attL 1073537:1073557|attR 1077090:1077110

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005727505.1\|1037672_1038851_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	3.3e-37	28.8
WP_065990992.1\|1039063_1039759_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_065990994.1\|1041117_1041378_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_020993030.1\|1041735_1042893_+	DUF1906 domain-containing protein	Q38317	Lactobacillus_phage	6.8e-59	52.4
WP_005719642.1\|1043042_1043654_+	DUF5052 family protein	A0A2K9VCV0	Lactobacillus_phage	3.0e-37	43.6
WP_005722391.1\|1043698_1044157_-	hypothetical protein	NA	NA	NA	NA
WP_057726712.1\|1044659_1045727_+	tyrosine recombinase XerS	A0A0E3T6W0	Gordonia_phage	5.2e-05	31.9
WP_065990996.1\|1045780_1047658_-	DNA mismatch repair protein MutS	F2QAG1	Chrysochromulina_ericina_virus	5.4e-21	26.3
WP_013086380.1\|1047993_1048872_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.2e-09	34.4
WP_005719632.1\|1048941_1049358_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_065990998.1\|1049640_1051332_+	fibronectin/fibrinogen-binding protein	Q84500	Paramecium_bursaria_Chlorella_virus	4.2e-09	40.2
WP_065991000.1\|1051406_1054601_-	carbamoyl phosphate synthase large subunit	NA	NA	NA	NA
WP_013086377.1\|1054605_1055661_-	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_005719627.1\|1055665_1056577_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_013086376.1\|1056569_1057034_-	signal peptidase II	NA	NA	NA	NA
WP_065991002.1\|1057039_1058716_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_005719623.1\|1058715_1059051_-	hypothetical protein	NA	NA	NA	NA
WP_034551643.1\|1061198_1061903_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_065991006.1\|1061883_1063815_-	tetracycline resistance ribosomal protection protein Tet(W)	E4ZFJ7	Streptococcus_phage	0.0e+00	99.5
WP_081096727.1\|1065109_1065310_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_065991025.1\|1066136_1066709_-	AAA family ATPase	C1KFF1	Lactobacillus_virus	1.6e-08	28.6
WP_065991008.1\|1066710_1067739_-	hypothetical protein	NA	NA	NA	NA
WP_065991010.1\|1067921_1068125_+	hypothetical protein	NA	NA	NA	NA
WP_065991012.1\|1068169_1068616_-	restriction endonuclease	NA	NA	NA	NA
WP_065991017.1\|1069281_1069971_-	hypothetical protein	NA	NA	NA	NA
WP_161903464.1\|1070089_1070404_-	DUF3841 domain-containing protein	NA	NA	NA	NA
WP_065991021.1\|1070464_1070650_-	DUF3841 domain-containing protein	NA	NA	NA	NA
WP_065991022.1\|1070800_1072027_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_065991023.1\|1072049_1072967_-	restriction endonuclease	NA	NA	NA	NA
WP_065991024.1\|1073053_1073650_+	hypothetical protein	NA	NA	NA	NA
1073537:1073557	attL	NA	NA	NA	NA
WP_065991187.1\|1073663_1074710_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.2e-47	34.6
WP_065991156.1\|1074802_1075414_+	hypothetical protein	NA	NA	NA	NA
WP_065991160.1\|1075453_1076386_-\|integrase	site-specific integrase	A8ATM2	Listeria_phage	9.9e-85	51.0
WP_065991162.1\|1076453_1077662_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.7e-07	25.3
1077090:1077110	attR	NA	NA	NA	NA
WP_065991164.1\|1077654_1079295_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.3e-115	47.4
WP_065991166.1\|1079307_1079946_-	hypothetical protein	NA	NA	NA	NA
WP_065991193.1\|1079952_1081002_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.1e-50	35.3
WP_065990551.1\|1083785_1084238_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002837187.1\|1084431_1084926_-	lincosamide nucleotidyltransferase Lnu(C)	A0A2K5B286	Erysipelothrix_phage	2.1e-49	55.5
WP_002837184.1\|1084949_1085987_-\|transposase	IS1595-like element ISSag10 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1090245 : 1154412

Ralstonia_virus(11.76%)

tRNA,integrase,protease,transposase

attL 1090209:1090268|attR 1153008:1154517

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1090209:1090268	attL	NA	NA	NA	NA
WP_043921381.1\|1090245_1091613_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.2e-31	29.1
WP_065991035.1\|1091980_1092418_-	hypothetical protein	NA	NA	NA	NA
WP_023488757.1\|1094166_1094568_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA
WP_005727739.1\|1094708_1095971_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	7.9e-69	38.4
WP_065991036.1\|1096323_1097607_-	peptidase T	NA	NA	NA	NA
WP_065991037.1\|1097619_1098075_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065991039.1\|1098520_1099726_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_005719583.1\|1099800_1100367_-	membrane protein	NA	NA	NA	NA
WP_065991041.1\|1100369_1101200_-	pyridoxamine kinase	NA	NA	NA	NA
WP_005722311.1\|1101265_1102336_-	serine hydrolase	NA	NA	NA	NA
WP_005719578.1\|1103147_1103597_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_161903465.1\|1103706_1104885_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.4e-37	28.8
WP_061204700.1\|1105070_1105703_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_013086334.1\|1105734_1105962_-	hypothetical protein	NA	NA	NA	NA
WP_057727053.1\|1105958_1106948_-	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_065990379.1\|1107109_1109623_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.6e-137	31.0
WP_061204698.1\|1110033_1110486_-	transcriptional regulator	NA	NA	NA	NA
WP_065990377.1\|1110566_1112336_-	DNA helicase RecQ	A0A1V0SBK0	Catovirus	2.9e-77	38.6
WP_013086330.1\|1112455_1113715_-	aluminum resistance protein	NA	NA	NA	NA
WP_057727010.1\|1113725_1115813_-	putative ornithine decarboxylase	NA	NA	NA	NA
WP_005727729.1\|1116045_1117518_+	APC family permease	NA	NA	NA	NA
WP_065990375.1\|1117583_1118072_-	hypothetical protein	NA	NA	NA	NA
WP_065990373.1\|1118258_1119665_+	dipeptidase PepV	NA	NA	NA	NA
WP_081307137.1\|1119766_1120609_-	amino acid permease	NA	NA	NA	NA
WP_057727014.1\|1120536_1120767_-	hypothetical protein	NA	NA	NA	NA
WP_005723027.1\|1120777_1121155_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.5e-10	34.1
WP_005727168.1\|1121151_1121550_-	CrcB family protein	NA	NA	NA	NA
WP_013086325.1\|1121814_1122630_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_065990371.1\|1122726_1123419_-	hypothetical protein	NA	NA	NA	NA
WP_161903462.1\|1124459_1125494_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.3e-41	33.3
WP_065990813.1\|1125623_1126520_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_060462948.1\|1127136_1128534_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IB03	Erwinia_phage	3.0e-29	26.7
WP_005720240.1\|1128545_1129070_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA
WP_005726225.1\|1129078_1129987_-	tyrosine recombinase XerC	A0A1B1IQT7	uncultured_Mediterranean_phage	6.4e-20	36.2
WP_065990811.1\|1129986_1131303_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_065990809.1\|1131325_1133437_-	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	1.6e-98	37.1
WP_065990807.1\|1133506_1134355_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_065990803.1\|1134416_1135169_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	6.7e-23	39.9
WP_061204687.1\|1135165_1136005_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_005722332.1\|1137541_1137772_-	YozE family protein	NA	NA	NA	NA
WP_005722333.1\|1137774_1138626_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.3e-18	40.3
WP_005720215.1\|1138739_1139405_+	hemolysin III family protein	NA	NA	NA	NA
WP_005720213.1\|1139441_1140641_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	1.8e-38	41.5
WP_065990801.1\|1140729_1141614_+	YitT family protein	M1Q1P6	Streptococcus_phage	4.4e-50	37.8
WP_005720210.1\|1141657_1142158_-	lactocepin s-layer protein	NA	NA	NA	NA
WP_065990798.1\|1143901_1144717_+	AAC(3) family N-acetyltransferase	NA	NA	NA	NA
WP_065990797.1\|1144758_1145523_-	nucleoside phosphorylase	F5CA76	Streptococcus_phi-m46.1-like_phage	2.0e-38	46.9
WP_065990795.1\|1145554_1146316_-	nucleoside phosphorylase	F5CA76	Streptococcus_phi-m46.1-like_phage	1.1e-36	46.6
WP_061204684.1\|1146365_1146866_-	kinase	NA	NA	NA	NA
WP_065990794.1\|1146891_1147605_-	glutamate ligase	NA	NA	NA	NA
WP_089145420.1\|1147698_1148226_-	multidrug transporter	NA	NA	NA	NA
WP_065990792.1\|1148914_1149697_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_005729577.1\|1149736_1150258_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065990790.1\|1150512_1151895_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_043921381.1\|1153044_1154412_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.2e-31	29.1
1153008:1154517	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1500383 : 1510015

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005718667.1\|1500383_1501022_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.5e-18	33.2
WP_065990286.1\|1501130_1502759_-	hypothetical protein	NA	NA	NA	NA
WP_005718663.1\|1502953_1503538_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.1e-52	54.4
WP_005722729.1\|1503602_1504538_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.4e-46	34.9
WP_005718658.1\|1504530_1505574_-	YvcK family protein	A1IMD5	Streptococcus_phage	2.6e-86	49.2
WP_005718656.1\|1505584_1506466_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.4e-08	30.3
WP_065990288.1\|1506559_1507102_-	hypothetical protein	NA	NA	NA	NA
WP_065990317.1\|1507174_1510015_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.1e-307	56.2

DBSCAN-SWA_8

1808820 : 1866090

uncultured_virus(18.18%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005727351.1\|1808820_1809513_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_005718274.1\|1809573_1810224_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	4.0e-08	32.1
WP_005718273.1\|1810366_1811638_-	hypothetical protein	NA	NA	NA	NA
WP_065989957.1\|1811778_1812465_+	DUF4145 domain-containing protein	NA	NA	NA	NA
WP_065989959.1\|1812644_1815296_+	calcium-translocating P-type ATPase, PMCA-type	M1HX51	Paramecium_bursaria_Chlorella_virus	7.2e-96	31.8
WP_005723897.1\|1815345_1815744_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_023488349.1\|1816171_1817164_-	asparaginase	NA	NA	NA	NA
WP_023488350.1\|1817175_1817949_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_005718261.1\|1818080_1819418_-	6-phospho-alpha-glucosidase	NA	NA	NA	NA
WP_065989965.1\|1820237_1821071_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_005723891.1\|1821528_1822071_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_065989967.1\|1822096_1822630_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	2.2e-12	27.8
WP_065989985.1\|1822868_1823432_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_065989969.1\|1823452_1825606_-	hypothetical protein	NA	NA	NA	NA
WP_065989973.1\|1826795_1827701_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_065989977.1\|1828044_1834092_+	S8 family serine peptidase	NA	NA	NA	NA
WP_158227328.1\|1834324_1834474_-	hypothetical protein	NA	NA	NA	NA
WP_065989979.1\|1835780_1836032_-	hypothetical protein	NA	NA	NA	NA
WP_065989981.1\|1836236_1836602_-	transporter	A0A0P0I7G8	Lactobacillus_phage	2.6e-33	64.4
WP_065989983.1\|1836619_1836991_-	hypothetical protein	NA	NA	NA	NA
WP_081307129.1\|1837138_1837648_-	hypothetical protein	Q6SEA6	Lactobacillus_prophage	7.0e-08	53.8
WP_081307166.1\|1840052_1841378_-	DUF4041 domain-containing protein	A0A1B0Y697	Lactobacillus_phage	4.0e-79	69.0
WP_065991187.1\|1841622_1842669_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.2e-47	34.6
WP_065989894.1\|1842665_1843097_-	hypothetical protein	NA	NA	NA	NA
WP_160328542.1\|1843203_1843410_+	hypothetical protein	NA	NA	NA	NA
WP_065989895.1\|1843594_1844398_-	hypothetical protein	NA	NA	NA	NA
WP_061205156.1\|1844453_1845071_-	hypothetical protein	NA	NA	NA	NA
WP_065989896.1\|1845898_1846780_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_065989897.1\|1846793_1847591_-	hypothetical protein	NA	NA	NA	NA
WP_061205153.1\|1847917_1848877_-	hypothetical protein	NA	NA	NA	NA
WP_065989899.1\|1849156_1850206_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	1.7e-48	34.9
WP_060461591.1\|1850666_1850972_-	hypothetical protein	NA	NA	NA	NA
WP_065989901.1\|1850971_1851241_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_065989913.1\|1851817_1852213_-	antitoxin HicB	NA	NA	NA	NA
WP_065989903.1\|1852235_1852457_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_065989905.1\|1852588_1854586_-	levansucrase	NA	NA	NA	NA
WP_065989907.1\|1854843_1855830_-	Abi family protein	A0A0S2MYH0	Enterococcus_phage	4.3e-30	28.3
WP_065989909.1\|1856231_1858199_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_161903470.1\|1858813_1859992_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.5e-37	28.1
WP_065990637.1\|1861297_1862086_-	hypothetical protein	NA	NA	NA	NA
WP_065990639.1\|1862112_1863927_-	type I restriction-modification system subunit M/S	NA	NA	NA	NA
WP_065990641.1\|1864577_1865945_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	1.3e-40	29.2
WP_005725993.1\|1865859_1866090_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1923303 : 1975648

Bacillus_phage(35.71%)

holin,bacteriocin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005721006.1\|1923303_1923498_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_005721005.1\|1923515_1923806_-	hypothetical protein	NA	NA	NA	NA
WP_005721002.1\|1924359_1924557_-	hypothetical protein	NA	NA	NA	NA
WP_065990717.1\|1924943_1925540_-	hypothetical protein	NA	NA	NA	NA
WP_065990719.1\|1925550_1927713_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	8.0e-45	28.1
WP_065990721.1\|1928282_1928507_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_065990723.1\|1928839_1930063_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_065990725.1\|1930440_1931241_-	response regulator transcription factor	NA	NA	NA	NA
WP_131501502.1\|1931233_1932244_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_065990729.1\|1934445_1935645_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_065990731.1\|1935781_1936000_-	hypothetical protein	NA	NA	NA	NA
WP_065990732.1\|1936015_1936375_-	hypothetical protein	NA	NA	NA	NA
WP_061205100.1\|1936403_1936589_-	hypothetical protein	NA	NA	NA	NA
WP_065990734.1\|1936753_1939060_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_065990739.1\|1939206_1940610_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_005720986.1\|1940817_1941003_-	hypothetical protein	NA	NA	NA	NA
WP_005720985.1\|1941017_1941209_-	hypothetical protein	NA	NA	NA	NA
WP_005726533.1\|1941284_1941509_-	hypothetical protein	NA	NA	NA	NA
WP_023488155.1\|1941657_1941981_-	hypothetical protein	NA	NA	NA	NA
WP_005721782.1\|1942122_1942872_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_065990742.1\|1942881_1944453_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_005723778.1\|1944505_1945660_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.6e-31	33.8
WP_005720977.1\|1945661_1946348_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-37	38.1
WP_081307150.1\|1946535_1946829_+	toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	2.3e-11	37.1
WP_065990745.1\|1947051_1948293_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0IJS6	Lactobacillus_phage	9.7e-120	56.5
WP_065990747.1\|1948462_1948804_-	hypothetical protein	NA	NA	NA	NA
WP_035163522.1\|1948867_1950733_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.3e-45	25.4
WP_013086960.1\|1950742_1952467_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-38	27.5
WP_065990749.1\|1952613_1953399_-	DUF1129 family protein	NA	NA	NA	NA
WP_005720971.1\|1953407_1954508_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_065990751.1\|1954561_1954825_-	DUF951 domain-containing protein	NA	NA	NA	NA
WP_065990752.1\|1954817_1955705_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-16	31.7
WP_005721788.1\|1955682_1956462_-	ParA family protein	Q8JL10	Natrialba_phage	2.5e-25	37.2
WP_065990753.1\|1956480_1957317_-	nucleoid occlusion protein	S5VSZ7	Leptospira_phage	2.3e-16	33.5
WP_065990754.1\|1957334_1958057_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_005720964.1\|1958218_1958755_+	CvpA family protein	NA	NA	NA	NA
WP_141685557.1\|1960439_1960577_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_005720962.1\|1960669_1961599_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_065990757.1\|1961601_1962393_-	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_005720960.1\|1962484_1963033_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	3.1e-30	41.0
WP_023488165.1\|1963046_1963586_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL82	Lactobacillus_phage	2.9e-28	42.0
WP_065990758.1\|1963738_1964362_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005721791.1\|1964489_1964732_-	hypothetical protein	NA	NA	NA	NA
WP_013086967.1\|1964839_1966252_+	C69 family dipeptidase	NA	NA	NA	NA
WP_005721793.1\|1966284_1966959_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.9e-35	39.3
WP_023488372.1\|1966960_1968022_-	ABC transporter permease	NA	NA	NA	NA
WP_005720105.1\|1968024_1968549_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005720104.1\|1968665_1969265_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_065990759.1\|1969394_1970150_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_013086975.1\|1970146_1970908_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_065990760.1\|1970966_1971611_+	hypothetical protein	NA	NA	NA	NA
WP_065990762.1\|1971694_1972492_-	DUF4931 domain-containing protein	NA	NA	NA	NA
WP_065990767.1\|1972648_1973851_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_013086978.1\|1973943_1974135_+	hypothetical protein	NA	NA	NA	NA
WP_065990769.1\|1974316_1975648_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	1.4e-60	38.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047143

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP047142

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection