CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047141	Lactobacillus sp. P38 chromosome, complete genome	2 crisprs	WYL,cas3,c2c9_V-U4,DEDDh,csa3,DinG,csn2,cas2,cas1,cas9	0	17	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047141_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047141_1

1105214-1106902

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CRT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	PILER-CR

25 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP047141_1

>merge|NZ_CP047141|1|1105214-1106902|CRISPRCasFinder,CRT,PILER-CR
ATACTAAAGTTTTACAAAACAACATAGCTCTAAAACACATAGGCCTTTAGCCATTAGACTAACAATGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACGAGTTAGTTGATGTTGTGGGGATAAATGCTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACCGTCTAATAAACGTGGTCCAAGATCTGGATGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTCGTAAACGGTGCGAGCATGAACAACGCAAGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACCTGTGCCCCCTTTACGAAAGCGTCTTTAACGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTGCTGATGTTGCTCATGATCCAAGATTTAAGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTCTCGCTTGGTTTTAATGTCGTTGTGGAAGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACATTCAAAGTAACACTATTTGCTGTTACGTTTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACATGACGTAAAAGAAATCATCGATGAATACGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACCTCACTTTGACATCTAACGAAGCATACTTGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTTGATCAGCCTTCTGATTGACATAAGACATGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACGCTAAACCATCAACAGCATCATTGACCATTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACACCTTATTTCCCTTTGCATCTTGTAAATTTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTACGATATAGGCATTACGCTTGGGCAATATGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACATCATATGGGTTTCTTGGTGGGTTATAACTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACATCAACACAAACAGCGCGATAGCTCCTTTGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACACAGTTGCCTTAATGTCTGTCGTGCCAGTAGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTTTTGTGCGTCGCTACTGTCAACTTTAGGTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACCGTGGTCATCGAATGATGGCTAATGGTGGTCGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTTCCAGAAAATTGTAGCTGAAATTCTCTCGGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTATTGGGTTAGTTATCGAAGGCAAAGGGAAGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACAGTCAAGGCGTTACAAGAAACAGACGCTTAGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACTTACCGATTTGAACATATGCACTTTGAGGTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACGCTATCTAGTTACCGTTATTGTGCTTGCGCGTTTTGGAGTCATACAAAACAACATAGCTCTAAAACAAAGGTGAGAGCTTAGCCACAATCGTCGGTGTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC

>NZ_CP047141|1|1|1105214-1106902|CRISPRCasFinder
ATACTAAAGTTTTACAAAACAACATAGCTCTAAAAC	ACATAGGCCTTTAGCCATTAGACTAACAATG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GAGTTAGTTGATGTTGTGGGGATAAATGCT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTCTAATAAACGTGGTCCAAGATCTGGAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCGTAAACGGTGCGAGCATGAACAACGCAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTGTGCCCCCTTTACGAAAGCGTCTTTAAC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TGCTGATGTTGCTCATGATCCAAGATTTAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCTCGCTTGGTTTTAATGTCGTTGTGGAAG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATTCAAAGTAACACTATTTGCTGTTACGTTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATGACGTAAAAGAAATCATCGATGAATACG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTCACTTTGACATCTAACGAAGCATACTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTGATCAGCCTTCTGATTGACATAAGACAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTAAACCATCAACAGCATCATTGACCATT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACCTTATTTCCCTTTGCATCTTGTAAATTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TACGATATAGGCATTACGCTTGGGCAATAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCATATGGGTTTCTTGGTGGGTTATAACT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCAACACAAACAGCGCGATAGCTCCTTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACAGTTGCCTTAATGTCTGTCGTGCCAGTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTTTGTGCGTCGCTACTGTCAACTTTAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTGGTCATCGAATGATGGCTAATGGTGGTC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTCCAGAAAATTGTAGCTGAAATTCTCTCG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TATTGGGTTAGTTATCGAAGGCAAAGGGAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AGTCAAGGCGTTACAAGAAACAGACGCTTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTACCGATTTGAACATATGCACTTTGAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTATCTAGTTACCGTTATTGTGCTTGCGC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AAAGGTGAGAGCTTAGCCACAATCGTCGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC

>NZ_CP047141|1|1|1105214-1106902|CRT
ATACTAAAGTTTTACAAAACAACATAGCTCTAAAAC	ACATAGGCCTTTAGCCATTAGACTAACAATG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GAGTTAGTTGATGTTGTGGGGATAAATGCT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTCTAATAAACGTGGTCCAAGATCTGGAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCGTAAACGGTGCGAGCATGAACAACGCAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTGTGCCCCCTTTACGAAAGCGTCTTTAAC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TGCTGATGTTGCTCATGATCCAAGATTTAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCTCGCTTGGTTTTAATGTCGTTGTGGAAG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATTCAAAGTAACACTATTTGCTGTTACGTTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATGACGTAAAAGAAATCATCGATGAATACG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTCACTTTGACATCTAACGAAGCATACTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTGATCAGCCTTCTGATTGACATAAGACAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTAAACCATCAACAGCATCATTGACCATT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACCTTATTTCCCTTTGCATCTTGTAAATTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TACGATATAGGCATTACGCTTGGGCAATAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCATATGGGTTTCTTGGTGGGTTATAACT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCAACACAAACAGCGCGATAGCTCCTTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACAGTTGCCTTAATGTCTGTCGTGCCAGTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTTTGTGCGTCGCTACTGTCAACTTTAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTGGTCATCGAATGATGGCTAATGGTGGTC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTCCAGAAAATTGTAGCTGAAATTCTCTCG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TATTGGGTTAGTTATCGAAGGCAAAGGGAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AGTCAAGGCGTTACAAGAAACAGACGCTTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTACCGATTTGAACATATGCACTTTGAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTATCTAGTTACCGTTATTGTGCTTGCGC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AAAGGTGAGAGCTTAGCCACAATCGTCGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC

>NZ_CP047141|1|1|1105281-1106902|PILER-CR
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GAGTTAGTTGATGTTGTGGGGATAAATGCT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTCTAATAAACGTGGTCCAAGATCTGGAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCGTAAACGGTGCGAGCATGAACAACGCAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTGTGCCCCCTTTACGAAAGCGTCTTTAAC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TGCTGATGTTGCTCATGATCCAAGATTTAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TCTCGCTTGGTTTTAATGTCGTTGTGGAAG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATTCAAAGTAACACTATTTGCTGTTACGTTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATGACGTAAAAGAAATCATCGATGAATACG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CTCACTTTGACATCTAACGAAGCATACTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTGATCAGCCTTCTGATTGACATAAGACAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTAAACCATCAACAGCATCATTGACCATT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACCTTATTTCCCTTTGCATCTTGTAAATTT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TACGATATAGGCATTACGCTTGGGCAATAT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCATATGGGTTTCTTGGTGGGTTATAACT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ATCAACACAAACAGCGCGATAGCTCCTTTG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	ACAGTTGCCTTAATGTCTGTCGTGCCAGTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTTTGTGCGTCGCTACTGTCAACTTTAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	CGTGGTCATCGAATGATGGCTAATGGTGGTC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTCCAGAAAATTGTAGCTGAAATTCTCTCG
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TATTGGGTTAGTTATCGAAGGCAAAGGGAA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AGTCAAGGCGTTACAAGAAACAGACGCTTA
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	TTACCGATTTGAACATATGCACTTTGAGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	GCTATCTAGTTACCGTTATTGTGCTTGCGC
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	AAAGGTGAGAGCTTAGCCACAATCGTCGGT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047141.1\|WP_004048019.1\|1104712_1105021_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP047141.1\|WP_066023980.1\|1113202_1114459_-\|guanosine-5'-monophosphate-oxidoreductase	unknown	unknown	gnl\|CDD\|370821
NZ_CP047141.1\|WP_066023982.1\|1118424_1118892_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP047141.1\|WP_004048016.1\|1104060_1104342_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP047141.1\|WP_035448152.1\|1106969_1107641_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP047141.1\|WP_035448156.1\|1103009_1103888_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP047141.1\|WP_066023977.1\|1096770_1098492_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP047141.1\|WP_066023981.1\|1117443_1117926_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_010689160.1\|1099827_1100616_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP047141.1\|WP_066024110.1\|1108831_1112773_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP047141.1\|WP_035448146.1\|1117184_1117379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_029507329.1\|1107959_1108835_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP047141.1\|WP_035448154.1\|1104364_1104691_-\|ribosomal-processing-cysteine-protease-Prp	unknown	unknown	gnl\|CDD\|377307
NZ_CP047141.1\|WP_010689173.1\|1117981_1118122_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_066023978.1\|1098519_1099794_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|272878
NZ_CP047141.1\|WP_066023979.1\|1100619_1101396_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
NZ_CP047141.1\|WP_010689167.1\|1107637_1107970_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP047141.1\|WP_010689163.1\|1102073_1102796_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787
NZ_CP047141.1\|WP_035448157.1\|1101501_1102065_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP047141.1\|WP_136344380.1\|1115385_1116012_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047141.1\|WP_004048019.1\|1104712_1105021_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	8.12881e-49
NZ_CP047141.1\|WP_066023980.1\|1113202_1114459_-\|guanosine-5'-monophosphate-oxidoreductase	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	7.2157e-32
NZ_CP047141.1\|WP_066023982.1\|1118424_1118892_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	9.2758e-45
NZ_CP047141.1\|WP_004048016.1\|1104060_1104342_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	9.38644e-49
NZ_CP047141.1\|WP_035448152.1\|1106969_1107641_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.28757e-109
NZ_CP047141.1\|WP_035448156.1\|1103009_1103888_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	3.33876e-62
NZ_CP047141.1\|WP_066023977.1\|1096770_1098492_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP047141.1\|WP_010689160.1\|1099827_1100616_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	9.97182e-65
NZ_CP047141.1\|WP_066024110.1\|1108831_1112773_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.43266e-177
NZ_CP047141.1\|WP_029507329.1\|1107959_1108835_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.17543e-117
NZ_CP047141.1\|WP_035448154.1\|1104364_1104691_-\|ribosomal-processing-cysteine-protease-Prp	gnl\|CDD\|377307	pfam04327, Peptidase_Prp, Cysteine protease Prp. This is a family of cysteine protease that are found to cleave the N-terminus extension of ribosomal subunit L27 in eubacteria. Proteins in this family are distinguished by a pair of invariant histidine and cysteine residues with conserved spacing that form the classic catalytic dyad of a cysteine protease.	4.27741e-40
NZ_CP047141.1\|WP_066023978.1\|1098519_1099794_-\|RIP-metalloprotease-RseP	gnl\|CDD\|272878	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP. Members of this nearly universal bacterial protein family are regulated intramembrane proteolysis (RIP) proteases. Older and synonymous gene symbols include yaeL in E. coli, mmpA in Caulobacter crescentus, etc. This family includes a region that hits the PDZ domain, found in a number of proteins targeted to the membrane by binding to a peptide ligand. The N-terminal region of this family contains a perfectly conserved motif HEXGH as found in a number of metalloproteinases, where the Glu is the active site and the His residues coordinate the metal cation. Membership in this family is determined by a match to the full length of the seed alignment; the model also detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	8.93677e-75
NZ_CP047141.1\|WP_066023979.1\|1100619_1101396_-\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	2.60064e-169
NZ_CP047141.1\|WP_010689167.1\|1107637_1107970_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.88001e-38
NZ_CP047141.1\|WP_010689163.1\|1102073_1102796_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	9.02463e-149
NZ_CP047141.1\|WP_035448157.1\|1101501_1102065_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.37206e-93

>NZ_CP047141.1|WP_004048019.1|1104712_1105021_-|50S-ribosomal-protein-L21
MYAIIETGGKQLKVEAGQAIYVEKLAAEAGEKVTFDKVVLVGGENTVIGTPFVEGATVEGTVEKQGRAKKVVTFKYKPKKHQHTKQGHRQPYTKVVIDAINA
>NZ_CP047141.1|WP_035448154.1|1104364_1104691_-|ribosomal-processing-cysteine-protease-Prp
MIHANIIRNGKVIEGFDITGHAGFAEAGEDIVCAAVSVLAINTINTLEKLLKQKFELVEDQKNGGLLQVALSDEGQNDPAVQLILSSLELGLKDVEQSYPKYIKTNIN
>NZ_CP047141.1|WP_004048016.1|1104060_1104342_-|50S-ribosomal-protein-L27
MLMNLQYFAHKKGGGSTSNGRDSRSKRLGAKSADGQTVNGGAILYRQRGTRIYPGVNVGMGGDNTLFAKVAGVVKFERKGRDKKQVSVYPVAE
>NZ_CP047141.1|WP_035448156.1|1103009_1103888_+|N-acetylmuramoyl-L-alanine-amidase
MEKPRTSHGSGLPKRIRVLFAIIFVLVGILGYRTYKYFGQLEIQTNYAVLKNGPGVEYDQISQLKQNQRVTVLKSKYHWMYVETDDEKKGWIADWMINSSYKLPITDLSNATIVIDPGHGGYDSGATSNTEKKEEKQYTLAYAKLLAKKLRKQNTKVYLTRSDDTFVSLSKRPALADQVHADAFISFHFDSSPVKNTASGFTTYYYHKNSAKLAQTINKEFGAIGLENRGVEIGDFLVIRDIKEPAILLEMGYINSDRDFDQISSKSYRATVVNDVYQGLEKYFAAQKDTSK
>NZ_CP047141.1|WP_010689163.1|1102073_1102796_-|UMP-kinase
MSDIKYKRVVMKLSGEALAGDAGQGINPPEIRKVAEEIKEVHDLGVQIAIVVGGGNMWRGESGAQMGMERAQADYIGMLGTVMNALALQDNLESIGVPTRVQTAIEMRQVAEPYIRRKAMRHLEKGRIVIFAAGTGSPYFSTDTTSALRASEINADVILMAKNGVDGVYSADPRKDANAVKYDKLTHMEIINKGLQVMDTTASSLSMDNNIPLVVFNMNERGNIKKVVQGETIGTTVEGK
>NZ_CP047141.1|WP_035448157.1|1101501_1102065_-|ribosome-recycling-factor
MKITNPTILQYQEKMTKAEEALQRELGTIRAGVANASLLNRVNVEYYGVPTPLNQMAQISVPEARVLLITPYDKSSLKDIEHALLVSDLGIAPMNDGSAIRLVIPQLTEERRKELAKQVKATSEKGKVAVRNVRREMMDALKKAQKNGDLTEDELRDLEDVAQKVTDNSIKNIENITAEKEKEVLAG
>NZ_CP047141.1|WP_066023979.1|1100619_1101396_-|isoprenyl-transferase
MFSNLFKNKQAAQNELDPPKIPAHIAIIMDGNGRWAKKRGLPRVAGHKQGMETVKTITKVASDLGVKVLTLYAFSTENWKRPQDEVGFLMDLPVKFFNTFVPELIANNVRVNVMGYTDKLPDSTQKAVFDAIEQTKDNTGMVLNFALNYGSRAEITSAVQALATQVKQGELEPSQIDEKVFSEALMTADLPYADPELLIRTSGEERISNFLLWQIAYSELVFTDVLWPDFSAEDLELSIYKFQQRDRRFGGLNKKEDN
>NZ_CP047141.1|WP_010689160.1|1099827_1100616_-|phosphatidate-cytidylyltransferase
MKQRVITAVIALIVFLPLLYLGGLPFDILVTLMGIVAMSEFLIMKKKLLVSFEAIISFLLILSVLLPVFWAGFWTQDTLGGSFYLLALVMLVYTVISKNRFSFDDAGVLLLGGLYAGLGFRFMMLARAESLWMILYALLIVWITDSGAYLIGRKIGKNKLAPHISPNKTWEGSIGGSLSAVVIVGAYLYFVQGAFPYSFSTMLLWTLVFSVGGQLGDLIESAFKRHYGVKDSGKILPGHGGILDRFDSLLFVLPLMHFAGLI
>NZ_CP047141.1|WP_066023978.1|1098519_1099794_-|RIP-metalloprotease-RseP
MITTIITFIIVFGILVFVHEFGHYYFAKRAGILVREFAIGMGPKLFAYRKNGTTYTWRILPLGGYISMAGLEDDTEELKKGMPVSLITDENSVVQKINTSKKITLVEGIPLELTDWDLTDGLWIEGYENGTEDEIKRFKVDHDALIIGKDGIELQIAPRDVRFQSASLVDRMLTNFAGPLNNFLLAIVAFGLVAFLQGGVPVTTNTIAQVQTDSVAQKAGLKANDTIIAINGDKTPTWDDVAQHIRTADGKELVLTVKRADKKQNIKVTPVQKNVNGQKVAQIGIIAKGKMDRSIKAKLTYGFTQTWYVIKQLGNALASMLHGFSLNDLGGPVAMFSLTSQAKENGLISVVTLTALLSVNLGIINLLPIPALDGGKLLLNIIEAIRRKPLDPEKEIIITMIGFGFLMILMLLVTWNDIQRYFFR
>NZ_CP047141.1|WP_066023977.1|1096770_1098492_-|proline--tRNA-ligase
MKQSKMLIPTLKEVPSDAEALSHQLMLRAGYIKQVTAGVYAYLPLAYRVLNNIETIIRDEMDKIDAVEMLVPGVLPAELWEESGRYKTYGANLFKLKDRHERDFILGPTHEETFTKIIKDAIKTYKKLPLKLYQIQMKYRDESRPRFGLLRGREFLMLDDYSFHTDMESLDQTYRDMDKAYQQIFERVGLDFRGIIADAGAMGGKDSKEFMAIAPIGEDTVVYSDSSDYAANLEMAKNLRINKKSHETPKELTKVATPDAKTIDEVSAFLEVEPESMIKTLVFMADEEPVIVLMRGNDELNEVKLKNYLDCDFLDPAEDAQARELLGADFGSLGPVGVAKDVKIVADLDVEGMVNANVGANENGYHYMNANIERDYRVDDFVDLRTVKEGDLSPDGEGVLKFTRGIEIGHIFKLGTRYSESLGATVLDENGREVPIIMGSYGIGVSRLLSAIVEQNSDENGIIWPRSIAPFDIHVVPVNVKKEEQVKLATEITTMLEDAGYKVLVDDRKERPGVKFADADLIGLPARITVGKKADEGIVEIKLRRTGETLEVKTDELLNSIKILLKEDQGIFG
>NZ_CP047141.1|WP_035448152.1|1106969_1107641_-|type-II-A-CRISPR-associated-protein-Csn2
MKINFPLLDGMIEFDKTLILAIEDTETFSDLARLLYSYNESSPLKLALDDFSPLKESQLMLVSDILGYNVNTPAILKLVYADLERQFGEKEEVKARLELLAVEIANIISSECLENELDLEYDEITLLELIKAMGVKIETTMSSVYEKCYEIVQIFKYLSKKKLLVFLNVGAYLTEKQIRSLLEYIELCNLNVIFLEPSKLYDLPQYILDSDYYLEYLNSSSES
>NZ_CP047141.1|WP_010689167.1|1107637_1107970_-|CRISPR-associated-endonuclease-Cas2
MGYRYMRMLLMFDLPTETAEDRKNYRRFRKFLLSEGFLMHQYSVYSKLLLNGSAKRSILDRLTKNKPPSGKVTVLTVTEKQFSRMIYLSGTSDPSIANTDKRVVFLGEEL
>NZ_CP047141.1|WP_029507329.1|1107959_1108835_-|type-II-CRISPR-associated-endonuclease-Cas1
MMGWRTVIVNKHSKLSYQNNHLVYRTPFETEMIHLSEIDILILETTDILLSTMLTKRLIDENVLVIFCDDKRMPTAQLLPFYGKHDSSLQIDKQMMWDAENKKVLWTEIISQKLINQSVCLHKHDFEKNSQKLLDYCADLTIFDKTNREGHAAKVYFNTLFGTGFTRDIKNPINAGLDYGYTLLLSMVAREIVKNGCLTQLGLKHVNQFNQFNLASDIMEPFRPIIDDIVFQNKELDFKSIKYCLLQIFSETYYFNGKEMFLTNIVEEYTRKVIQALNKKSEEVPIFKYGL
>NZ_CP047141.1|WP_066024110.1|1108831_1112773_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKDYSIGLDIGTNSVGHAVVTDDYKVPTKKMKVFGDTSKKTIKKNMLGVLLFNEGQTAADTRLKRGARRRYTRRKNRLRYLQEIFAPALAKVDPNFFYRLEESSLVAEDKKYDVYPIFGKREEELLYHDTHKTIYHLRSELANNDRPADLRLVYLALAHIIKYRGNFLLEGEIDLRTTDINKVFAEFSETLNENSDENLGKLDVADIFKDNTFSKTKKSEELLKLSGAKKNQLAHQLFKMMVGNMGSFKKVLGTDEEHKLSFGKDTYEDDLNDLLAEAGDQYLDIFVAAKKVYDAAILASILDVKDTQTKTVFSQAMIERYEEHQKDLIELKRVFKKYLPEKCHDFFSEPKISGYAGYIDGKVSEEDFYKYTKKTLKGIPETEEILQKIDANNYLRKQRTFDNGAIPHQVHLKELVAIVENQGKYYPFLRENKDKFEKILNFRIPYYVGPLARGNSKFAWLTRAGEGKITPYNFDEMIDKETSAEDFIKRMTINDLYLPTEPVLPKHSLLYERYTIFNELAGVRYVTENGEAKYFDAQTKRSIFELFKLDRKVSEKMVIKHLKVVMPAIRIQALKGLDNGKFNASYGTYKDLVDMGVAPELLNDEVNSEKWEDIIKTLTIFEGRKLIKRRLENYRDFLGEDILRKLSRKKYTGWGRLSAKLLDGIYDKKTHKTILDCLMTEDYSQNFMQLINDDTYSFKETIKNAQVIEKEETLAKTVQELPGSPAIKKGILQSLEIVDEIIKVMGYKPKSIVVEMARETQKTHGTRKREDRVQQIVKNLKDANELPKKLPSNAELSDERKYLYCLQNGRDMYTGAPLDYDHLQFYDVDHIIPQSFLKDDSIENKVLTIKKENVRKTNGLPSEAVIQKMGSFWKKLLDAGAMTNKKYDNLRRNLHGGLNEKLKERFIERQLVETRQITKYVAQLLDQRLNYDGNGVELDEKIAIVTLKAQLASQFRSEFKLRKVRALNNLHHAHDAYLNAIVANLIMAKYPELEPEFVYGKYRKTKFKGLGKATAKNTLYANVLYFLKENEVYPFWDKARDLPTIKRYLYRAQVNKVRKAERQTGGFSDEMLVPKSDSGKLLPRKEGLDPVKYGGYAKAVESYAVLITADEVKKGKTKKVKTLVNIPIIDSKKYEADPTAYLASRGYTNVTNSFILPKYSLLEDPEGRRRYLASFKEFQKANELILPRHLVELLYWVNAKDGEQKLEDHKAEFKELFDKIMEFADKYVVASKNSEKIRRLYEENQDATPMELGKNFVELLRYTADGAASDFKFFGENIPRKRYNSAGSLLNGTLIYQSKTGLYETRIDLGKL
>NZ_CP047141.1|WP_066023980.1|1113202_1114459_-|guanosine-5'-monophosphate-oxidoreductase
MIVLYDNREFDIDLLGNELASKLVGRSLRELENEDFLVFPPSIAKSDTTIFSAINGKTTTGNLVGFLSDGKQNVVIKSRFSEYADDDYFLTYMLEKVLNYSIIDSFQGSSEKKPYYNLLLLLFPYYMNIAMQKGPYKEYVKRNYNNADFRGRINISKQLKRNIPFSGQIAYQVSELSYDNDLMQLVRHALEKVSERLPNLINSKVETRKNVSLIRQATPSYSKVQTMSVLQKNIRNEIRHNYFSEYISLQKLCIQILKENGVGDNNKKFYGIIVDIAWLWEEYIATITKWKHYGMERKLETLYLFRDSRNHHRYPDFIVENIPIDTKYKFELDTVNDYNQLITYLHIINKSQSSTMQAGFLQPTTSYDQTWQQLETLEGLGGNLFTYKFYVPQQVDSYENFVRKIRKVEKQLKDYFAD
>NZ_CP047141.1|WP_136344380.1|1115385_1116012_-|hypothetical-protein
MVKIDIKHFSDWYFENKSALLKRAEAWKKQNMQLAKEFLKEWPLDRIKTMELDEYVIGRGPANKSLCYEIEAGKYRDLHLGIRGGSANKFGIYWNKEKQVYCNKRNQPIPVSELEAEFTKLKADLIAILEAGIKKDFDSEEFSSKNSFFTRPAIITKLLCAYSAENTYVGINMNLDNDKIWKKLYTPKKEGWVYHQNHGLTVMMERFP
>NZ_CP047141.1|WP_035448146.1|1117184_1117379_-|hypothetical-protein
MKDKMSIAIVVAIFITQYFYSLFIAKLMPSAEVNLVVNILVSLLVIASVVLVFKGLEKWKCANR
>NZ_CP047141.1|WP_066023981.1|1117443_1117926_-|hypothetical-protein
MDEQLDINMIKVLTQPPVPPAVHYVNPRTIMGQFEWDKLKRQYRLLADNHCMICQRYVSHTAGDWLELHEQYEYDFINLTQTLTGYVSICHKCHMYIHTGFLELQLQRGDISLEKYQQVIAKGEALLQAFGLQKIMYPNEACFYDPEWKLSFDGKLYQSH
>NZ_CP047141.1|WP_010689173.1|1117981_1118122_-|hypothetical-protein
MTLKDVELLLNDSNLLPFEKVTLQDELIEGTHTQEHILSDSRKAKT
>NZ_CP047141.1|WP_066023982.1|1118424_1118892_-|DNA-starvation/stationary-phase-protection-protein
MKYGETKKVLNQLVADLSQMSMIIHQTHWYMRGTNFLKLHPLMDEFMDEINDQLDVISERLIILDGAPYSTLREMADHTKIEDEPGSYDKTIQEHLRKLLEGYRYLEALYQKGIEVSDQEQDHSTQDIFIGFKTDIEKKIWMVSAELDQAPEIDN

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Crispr_ID: NZ_CP047141_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047141_2

1116349-1116913

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CRISPRCasFinder
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CRT
GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	PILER-CR

8 spacers

cas9,cas1,cas2,csn2

The CRISPR arrays of NZ_CP047141_2

>merge|NZ_CP047141|2|1116349-1116913|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACAAAATCTACGCCAGACGATCTACAAACATCGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACGCCAGCCCAGCCAGTGACCCACTCTTCATGGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACCGAAGGTTTTCTACATGATAGTGTGCAGCCGGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACATCAAATCCGGCTTGATAAAGATCATCGTAGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACCTTATCAAGACATCATAAACCAAACAGTCTGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACTTCGCATATGCACAAAGAAGATTAACTAAAGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACTGAGCACTTGCTTTGCCATTACCAATCATTGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAACTGTGGAAGAAGAAGGCGGAGCTAACCCACCGTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC

>NZ_CP047141|2|2|1116349-1116913|CRISPRCasFinder
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	AAAATCTACGCCAGACGATCTACAAACATC
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	GCCAGCCCAGCCAGTGACCCACTCTTCATG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CGAAGGTTTTCTACATGATAGTGTGCAGCCG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	ATCAAATCCGGCTTGATAAAGATCATCGTA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CTTATCAAGACATCATAAACCAAACAGTCT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TTCGCATATGCACAAAGAAGATTAACTAAA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGAGCACTTGCTTTGCCATTACCAATCATT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGTGGAAGAAGAAGGCGGAGCTAACCCACC
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC

>NZ_CP047141|2|2|1116349-1116913|CRT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	AAAATCTACGCCAGACGATCTACAAACATC
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	GCCAGCCCAGCCAGTGACCCACTCTTCATG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CGAAGGTTTTCTACATGATAGTGTGCAGCCG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	ATCAAATCCGGCTTGATAAAGATCATCGTA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CTTATCAAGACATCATAAACCAAACAGTCT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TTCGCATATGCACAAAGAAGATTAACTAAA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGAGCACTTGCTTTGCCATTACCAATCATT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGTGGAAGAAGAAGGCGGAGCTAACCCACC
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC

>NZ_CP047141|2|2|1116415-1116913|PILER-CR
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	GCCAGCCCAGCCAGTGACCCACTCTTCATG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CGAAGGTTTTCTACATGATAGTGTGCAGCCG
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	ATCAAATCCGGCTTGATAAAGATCATCGTA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	CTTATCAAGACATCATAAACCAAACAGTCT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TTCGCATATGCACAAAGAAGATTAACTAAA
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGAGCACTTGCTTTGCCATTACCAATCATT
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	TGTGGAAGAAGAAGGCGGAGCTAACCCACC
GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047141.1\|WP_136344380.1\|1115385_1116012_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_066023980.1\|1113202_1114459_-\|guanosine-5'-monophosphate-oxidoreductase	unknown	unknown	gnl\|CDD\|370821
NZ_CP047141.1\|WP_066023982.1\|1118424_1118892_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP047141.1\|WP_066023981.1\|1117443_1117926_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_004048016.1\|1104060_1104342_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP047141.1\|WP_035448135.1\|1125541_1126873_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349930
NZ_CP047141.1\|WP_010689167.1\|1107637_1107970_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP047141.1\|WP_035448156.1\|1103009_1103888_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP047141.1\|WP_035448152.1\|1106969_1107641_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP047141.1\|WP_035448133.1\|1126978_1127170_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_035448146.1\|1117184_1117379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_066023983.1\|1120623_1122360_-\|peptide-binding-protein	unknown	unknown	gnl\|CDD\|173875
NZ_CP047141.1\|WP_066024110.1\|1108831_1112773_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP047141.1\|WP_035448154.1\|1104364_1104691_-\|ribosomal-processing-cysteine-protease-Prp	unknown	unknown	gnl\|CDD\|377307
NZ_CP047141.1\|WP_004048019.1\|1104712_1105021_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP047141.1\|WP_035448136.1\|1123715_1125410_-\|oleate-hydratase	unknown	unknown	gnl\|CDD\|237575
NZ_CP047141.1\|WP_035448130.1\|1127313_1127751_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP047141.1\|WP_029507329.1\|1107959_1108835_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP047141.1\|WP_010689173.1\|1117981_1118122_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047141.1\|WP_035448137.1\|1123285_1123492_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047141.1\|WP_004048019.1\|1104712_1105021_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	8.12881e-49
NZ_CP047141.1\|WP_066023980.1\|1113202_1114459_-\|guanosine-5'-monophosphate-oxidoreductase	gnl\|CDD\|370821	pfam10117, McrBC, McrBC 5-methylcytosine restriction system component. Members of this family of bacterial proteins modify the specificity of mcrB restriction by expanding the range of modified sequences restricted.	7.2157e-32
NZ_CP047141.1\|WP_066023982.1\|1118424_1118892_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	9.2758e-45
NZ_CP047141.1\|WP_004048016.1\|1104060_1104342_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	9.38644e-49
NZ_CP047141.1\|WP_035448135.1\|1125541_1126873_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349930	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. This family includes Sso-CP2 from Sulfolobus solfataricus.	0
NZ_CP047141.1\|WP_035448152.1\|1106969_1107641_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.28757e-109
NZ_CP047141.1\|WP_035448156.1\|1103009_1103888_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	3.33876e-62
NZ_CP047141.1\|WP_066024110.1\|1108831_1112773_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.43266e-177
NZ_CP047141.1\|WP_066023983.1\|1120623_1122360_-\|peptide-binding-protein	gnl\|CDD\|173875	cd08510, PBP2_Lactococcal_OppA_like, The substrate binding component of an ABC-type lactococcal OppA-like transport system contains. This family represents the substrate binding domain of an ATP-binding cassette (ABC)-type oligopeptide import system from Lactococcus lactis and other gram-positive bacteria, as well as its closet homologs from gram-negative bacteria. Oligopeptide-binding protein (OppA) from Lactococcus lactis can bind peptides of length from 4 to at least 35 residues without sequence preference. The oligopeptide import system OppABCDEF is consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP047141.1\|WP_010689167.1\|1107637_1107970_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.88001e-38
NZ_CP047141.1\|WP_035448154.1\|1104364_1104691_-\|ribosomal-processing-cysteine-protease-Prp	gnl\|CDD\|377307	pfam04327, Peptidase_Prp, Cysteine protease Prp. This is a family of cysteine protease that are found to cleave the N-terminus extension of ribosomal subunit L27 in eubacteria. Proteins in this family are distinguished by a pair of invariant histidine and cysteine residues with conserved spacing that form the classic catalytic dyad of a cysteine protease.	4.27741e-40
NZ_CP047141.1\|WP_035448136.1\|1123715_1125410_-\|oleate-hydratase	gnl\|CDD\|237575	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.	0
NZ_CP047141.1\|WP_035448130.1\|1127313_1127751_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.47477e-32
NZ_CP047141.1\|WP_029507329.1\|1107959_1108835_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.17543e-117

>NZ_CP047141.1|WP_136344380.1|1115385_1116012_-|hypothetical-protein
MVKIDIKHFSDWYFENKSALLKRAEAWKKQNMQLAKEFLKEWPLDRIKTMELDEYVIGRGPANKSLCYEIEAGKYRDLHLGIRGGSANKFGIYWNKEKQVYCNKRNQPIPVSELEAEFTKLKADLIAILEAGIKKDFDSEEFSSKNSFFTRPAIITKLLCAYSAENTYVGINMNLDNDKIWKKLYTPKKEGWVYHQNHGLTVMMERFP
>NZ_CP047141.1|WP_066023980.1|1113202_1114459_-|guanosine-5'-monophosphate-oxidoreductase
MIVLYDNREFDIDLLGNELASKLVGRSLRELENEDFLVFPPSIAKSDTTIFSAINGKTTTGNLVGFLSDGKQNVVIKSRFSEYADDDYFLTYMLEKVLNYSIIDSFQGSSEKKPYYNLLLLLFPYYMNIAMQKGPYKEYVKRNYNNADFRGRINISKQLKRNIPFSGQIAYQVSELSYDNDLMQLVRHALEKVSERLPNLINSKVETRKNVSLIRQATPSYSKVQTMSVLQKNIRNEIRHNYFSEYISLQKLCIQILKENGVGDNNKKFYGIIVDIAWLWEEYIATITKWKHYGMERKLETLYLFRDSRNHHRYPDFIVENIPIDTKYKFELDTVNDYNQLITYLHIINKSQSSTMQAGFLQPTTSYDQTWQQLETLEGLGGNLFTYKFYVPQQVDSYENFVRKIRKVEKQLKDYFAD
>NZ_CP047141.1|WP_066024110.1|1108831_1112773_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKDYSIGLDIGTNSVGHAVVTDDYKVPTKKMKVFGDTSKKTIKKNMLGVLLFNEGQTAADTRLKRGARRRYTRRKNRLRYLQEIFAPALAKVDPNFFYRLEESSLVAEDKKYDVYPIFGKREEELLYHDTHKTIYHLRSELANNDRPADLRLVYLALAHIIKYRGNFLLEGEIDLRTTDINKVFAEFSETLNENSDENLGKLDVADIFKDNTFSKTKKSEELLKLSGAKKNQLAHQLFKMMVGNMGSFKKVLGTDEEHKLSFGKDTYEDDLNDLLAEAGDQYLDIFVAAKKVYDAAILASILDVKDTQTKTVFSQAMIERYEEHQKDLIELKRVFKKYLPEKCHDFFSEPKISGYAGYIDGKVSEEDFYKYTKKTLKGIPETEEILQKIDANNYLRKQRTFDNGAIPHQVHLKELVAIVENQGKYYPFLRENKDKFEKILNFRIPYYVGPLARGNSKFAWLTRAGEGKITPYNFDEMIDKETSAEDFIKRMTINDLYLPTEPVLPKHSLLYERYTIFNELAGVRYVTENGEAKYFDAQTKRSIFELFKLDRKVSEKMVIKHLKVVMPAIRIQALKGLDNGKFNASYGTYKDLVDMGVAPELLNDEVNSEKWEDIIKTLTIFEGRKLIKRRLENYRDFLGEDILRKLSRKKYTGWGRLSAKLLDGIYDKKTHKTILDCLMTEDYSQNFMQLINDDTYSFKETIKNAQVIEKEETLAKTVQELPGSPAIKKGILQSLEIVDEIIKVMGYKPKSIVVEMARETQKTHGTRKREDRVQQIVKNLKDANELPKKLPSNAELSDERKYLYCLQNGRDMYTGAPLDYDHLQFYDVDHIIPQSFLKDDSIENKVLTIKKENVRKTNGLPSEAVIQKMGSFWKKLLDAGAMTNKKYDNLRRNLHGGLNEKLKERFIERQLVETRQITKYVAQLLDQRLNYDGNGVELDEKIAIVTLKAQLASQFRSEFKLRKVRALNNLHHAHDAYLNAIVANLIMAKYPELEPEFVYGKYRKTKFKGLGKATAKNTLYANVLYFLKENEVYPFWDKARDLPTIKRYLYRAQVNKVRKAERQTGGFSDEMLVPKSDSGKLLPRKEGLDPVKYGGYAKAVESYAVLITADEVKKGKTKKVKTLVNIPIIDSKKYEADPTAYLASRGYTNVTNSFILPKYSLLEDPEGRRRYLASFKEFQKANELILPRHLVELLYWVNAKDGEQKLEDHKAEFKELFDKIMEFADKYVVASKNSEKIRRLYEENQDATPMELGKNFVELLRYTADGAASDFKFFGENIPRKRYNSAGSLLNGTLIYQSKTGLYETRIDLGKL
>NZ_CP047141.1|WP_029507329.1|1107959_1108835_-|type-II-CRISPR-associated-endonuclease-Cas1
MMGWRTVIVNKHSKLSYQNNHLVYRTPFETEMIHLSEIDILILETTDILLSTMLTKRLIDENVLVIFCDDKRMPTAQLLPFYGKHDSSLQIDKQMMWDAENKKVLWTEIISQKLINQSVCLHKHDFEKNSQKLLDYCADLTIFDKTNREGHAAKVYFNTLFGTGFTRDIKNPINAGLDYGYTLLLSMVAREIVKNGCLTQLGLKHVNQFNQFNLASDIMEPFRPIIDDIVFQNKELDFKSIKYCLLQIFSETYYFNGKEMFLTNIVEEYTRKVIQALNKKSEEVPIFKYGL
>NZ_CP047141.1|WP_010689167.1|1107637_1107970_-|CRISPR-associated-endonuclease-Cas2
MGYRYMRMLLMFDLPTETAEDRKNYRRFRKFLLSEGFLMHQYSVYSKLLLNGSAKRSILDRLTKNKPPSGKVTVLTVTEKQFSRMIYLSGTSDPSIANTDKRVVFLGEEL
>NZ_CP047141.1|WP_035448152.1|1106969_1107641_-|type-II-A-CRISPR-associated-protein-Csn2
MKINFPLLDGMIEFDKTLILAIEDTETFSDLARLLYSYNESSPLKLALDDFSPLKESQLMLVSDILGYNVNTPAILKLVYADLERQFGEKEEVKARLELLAVEIANIISSECLENELDLEYDEITLLELIKAMGVKIETTMSSVYEKCYEIVQIFKYLSKKKLLVFLNVGAYLTEKQIRSLLEYIELCNLNVIFLEPSKLYDLPQYILDSDYYLEYLNSSSES
>NZ_CP047141.1|WP_004048019.1|1104712_1105021_-|50S-ribosomal-protein-L21
MYAIIETGGKQLKVEAGQAIYVEKLAAEAGEKVTFDKVVLVGGENTVIGTPFVEGATVEGTVEKQGRAKKVVTFKYKPKKHQHTKQGHRQPYTKVVIDAINA
>NZ_CP047141.1|WP_035448154.1|1104364_1104691_-|ribosomal-processing-cysteine-protease-Prp
MIHANIIRNGKVIEGFDITGHAGFAEAGEDIVCAAVSVLAINTINTLEKLLKQKFELVEDQKNGGLLQVALSDEGQNDPAVQLILSSLELGLKDVEQSYPKYIKTNIN
>NZ_CP047141.1|WP_004048016.1|1104060_1104342_-|50S-ribosomal-protein-L27
MLMNLQYFAHKKGGGSTSNGRDSRSKRLGAKSADGQTVNGGAILYRQRGTRIYPGVNVGMGGDNTLFAKVAGVVKFERKGRDKKQVSVYPVAE
>NZ_CP047141.1|WP_035448156.1|1103009_1103888_+|N-acetylmuramoyl-L-alanine-amidase
MEKPRTSHGSGLPKRIRVLFAIIFVLVGILGYRTYKYFGQLEIQTNYAVLKNGPGVEYDQISQLKQNQRVTVLKSKYHWMYVETDDEKKGWIADWMINSSYKLPITDLSNATIVIDPGHGGYDSGATSNTEKKEEKQYTLAYAKLLAKKLRKQNTKVYLTRSDDTFVSLSKRPALADQVHADAFISFHFDSSPVKNTASGFTTYYYHKNSAKLAQTINKEFGAIGLENRGVEIGDFLVIRDIKEPAILLEMGYINSDRDFDQISSKSYRATVVNDVYQGLEKYFAAQKDTSK
>NZ_CP047141.1|WP_035448146.1|1117184_1117379_-|hypothetical-protein
MKDKMSIAIVVAIFITQYFYSLFIAKLMPSAEVNLVVNILVSLLVIASVVLVFKGLEKWKCANR
>NZ_CP047141.1|WP_066023981.1|1117443_1117926_-|hypothetical-protein
MDEQLDINMIKVLTQPPVPPAVHYVNPRTIMGQFEWDKLKRQYRLLADNHCMICQRYVSHTAGDWLELHEQYEYDFINLTQTLTGYVSICHKCHMYIHTGFLELQLQRGDISLEKYQQVIAKGEALLQAFGLQKIMYPNEACFYDPEWKLSFDGKLYQSH
>NZ_CP047141.1|WP_010689173.1|1117981_1118122_-|hypothetical-protein
MTLKDVELLLNDSNLLPFEKVTLQDELIEGTHTQEHILSDSRKAKT
>NZ_CP047141.1|WP_066023982.1|1118424_1118892_-|DNA-starvation/stationary-phase-protection-protein
MKYGETKKVLNQLVADLSQMSMIIHQTHWYMRGTNFLKLHPLMDEFMDEINDQLDVISERLIILDGAPYSTLREMADHTKIEDEPGSYDKTIQEHLRKLLEGYRYLEALYQKGIEVSDQEQDHSTQDIFIGFKTDIEKKIWMVSAELDQAPEIDN
>NZ_CP047141.1|WP_066023983.1|1120623_1122360_-|peptide-binding-protein
MNKAKLGKVAILLLGMMIFWISEPLWQVQADSLKMEYKNPKKAKKGGTLRVGYINNGAFKGIFSPEIADDGPTLELAQFGMVSLFKIDPNNEFKRGGLADISFDRKNKTATVKISKRAKWSDGHPVVARDLSFAYEIVANKAVGSSHYSEELENIEGMREYHNGTADKISGLEEKDDKTLVIHFKKMKPTMTTTGSGYILESAEPYHYLKNVAMKDLVASDKLRKKPLFYGPFKIKKLVQGESIEWVPNTYYYKKPHIAKIIVETIDNSKAVVAIKAGKFDVMLAQSPQIYNALKKDKDLVQLGKKTYYYSYMGFRVGKLDKDGNNVMDKHTPSSDRALRQAMAYAMNVEQVTKKFSSGLSYRANTVVPDVFGKWNAKEVKGYKLDMKKAKKLLDDAGYKLQKDSYRTKPNGKKLTLTLMADDSSKSQEETIKNYIQQWKELGVHVKLLNGRFQEFNTMVEKLSSGSTDYDLWFGAWGVTPEPTDIANSYTVTSAYNNGHFVTKENTELINSLKSDKAFDEKYRLKQFHKWQAYMDKEAFVVPIAFTHDTISVTKHVKNMSLDPNKDNDLWVDVALTK
>NZ_CP047141.1|WP_035448137.1|1123285_1123492_-|hypothetical-protein
MVLPVSTVLEAFGIEFVALFCLVARKYYWVIAILVGTPILMVFCGMFLAEAIGYYGKEFFGLDLYPLW
>NZ_CP047141.1|WP_035448136.1|1123715_1125410_-|oleate-hydratase
MLKNKAVMIGAGIANMAAAVYLIQEGHWRGEDITFYALDLHGANDGAAASVAAEQYWNKNHPMENTKGYVARGGRMLNYRTYVDLMDLLDRIPSVTEPGMTAAEDTRDFDSKHRTFDKARLMQGGKGIIDGHKLGLNNLDRMLLTRLIMLPDDKEEELDNVSIAEYFKDDPHMFQTNFWYMWETTFAFRVESSAQELRRYMHQMIYEFTQIEHLVGVNRTRYNQFESIMLPLIKYLEGQGCKFVMNSRVEAFDFKETSMQDEITVTGLEILDTATNEKKHVTIDSDTAVFFTNGSITDSASLGDFNTPAPENMDYGAASSLWKQATQHFYNLGNPDKFFADRNASEWVSFTLTTKDHLLLNEITRITTQLPGNALNSFLSTEPITPLGHEDVNMSIVVHHQPHFTTQKPNETVLWGYFLYPRRRGEFVDKQYIKMTGKEMLQELIGQLSKVDPGPVNIKEKEAAIMDSVINCIPVYMPYASALFNNRAKSDRPEVIPTHSTNLAFTGEFVEQPYQMVFTEQSAVRSGEIAAYHFAGIPESQLVKTPRYDKDPRVLLRAAKRMFE
>NZ_CP047141.1|WP_035448135.1|1125541_1126873_-|M20/M25/M40-family-metallo-hydrolase
MKENLRKFALKHLPDYFELLRLRSISAQQKEIPETAEYLVKVFNELGAARVEKLGSPEHAPAIFAEFTGNDPTKTILFYQHYDVQPPEPLEKWESDPFEPTIREEKLYARGASDNKGELISRLVLVKYFQANGGLPVNVKFFVEGEEEIGSLHVEQIVKENKAKLAADACIWEGGGKNYVDNYQIVGGMRGITVFDVETTTADIDLHSSLASYAENAAWRLVRGLATLRDDTGKVLVEGFYDDVEPLSKAEEEAVFAYDFDLDVAISRAGLRRTVKAEHKVALVNEPTMTINGLTAGYQGKGVKTVIPHMASAKLDCRLTPSQDPRKIAQLIQEHLDKNGFADLKVRYRLGENGYRSPMSDPFIKLVLAKAKKHYGKQTKYLPNSAGGGPAEIFGNELNLPIVILGVSYAGSQVHSPNEHIRLQDFGDGTQLLGDILIEFGKN
>NZ_CP047141.1|WP_035448133.1|1126978_1127170_-|hypothetical-protein
MKADKEILYNVIGYIICDLFLIWYLPNDTWLEIGINIVIMIVVMFGVYMILDVILKRLRVRKN
>NZ_CP047141.1|WP_035448130.1|1127313_1127751_+|Rrf2-family-transcriptional-regulator
MQISSRFTIAMHILTYIATAPAEEKVTSEILADSIQVNPVIIRNILSQLKKADLITVKRGQGGATIIKPFDQLSLFDVYRAVDSVKDGVLFSFHENPNPNCPVGRNIHNILDDKLLRVQQAMENELKAITLAEVLQDADKYLANK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	MN855743	Bacteriophage sp. isolate 332, complete genome	3762-3791	5	0.833
NZ_CP047141_1	1.17\|1106308\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106308-1106337	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	568317-568346	5	0.833
NZ_CP047141_1	1.23\|1106705\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106705-1106734	30	GU071097	Synechococcus phage S-SSM5, complete genome	21692-21721	5	0.833
NZ_CP047141_1	1.23\|1106705\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106705-1106734	30	NC_021536	Synechococcus phage S-IOM18 genomic sequence	11168-11197	5	0.833
NZ_CP047141_2	2.6\|1116716\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116716-1116745	30	MN417334	Clostridium phage CPAS-15, complete genome	11120-11149	5	0.833
NZ_CP047141_2	2.6\|1116716\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116716-1116745	30	KY206887	Clostridium phage Clo-PEP-1, complete genome	49435-49464	5	0.833
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN694340	Marine virus AFVG_250M926, complete genome	20385-20414	6	0.8
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN694797	Marine virus AFVG_250M7, complete genome	23494-23523	6	0.8
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN694733	Marine virus AFVG_250M925, complete genome	19554-19583	6	0.8
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN693955	Marine virus AFVG_250M927, complete genome	19726-19755	6	0.8
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN693622	Marine virus AFVG_250M928, complete genome	19732-19761	6	0.8
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN694168	Marine virus AFVG_250M750, complete genome	23490-23519	6	0.8
NZ_CP047141_1	1.13\|1106044\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106044-1106073	30	NZ_CP024339	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4	6797-6826	6	0.8
NZ_CP047141_1	1.16\|1106242\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106242-1106271	30	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	125092-125121	6	0.8
NZ_CP047141_1	1.16\|1106242\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106242-1106271	30	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	433416-433445	6	0.8
NZ_CP047141_2	2.8\|1116848\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116848-1116877	30	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	197350-197379	6	0.8
NZ_CP047141_2	2.8\|1116848\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116848-1116877	30	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	48745-48774	6	0.8
NZ_CP047141_2	2.8\|1116848\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116848-1116877	30	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	12171-12200	6	0.8
NZ_CP047141_2	2.8\|1116848\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116848-1116877	30	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	37295-37324	6	0.8
NZ_CP047141_1	1.2\|1105317\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105317-1105346	30	LG146436	KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same	36954-36983	7	0.767
NZ_CP047141_1	1.2\|1105317\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105317-1105346	30	KF534715	Pectobacterium phage PM1, complete genome	36954-36983	7	0.767
NZ_CP047141_1	1.2\|1105317\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105317-1105346	30	KY087898	Pectobacterium phage PP101, complete genome	38005-38034	7	0.767
NZ_CP047141_1	1.6\|1105581\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105581-1105610	30	NC_014124	Pseudomonas putida plasmid pDK1, complete sequence	77103-77132	7	0.767
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	NZ_CP015165	Acetobacter ascendens strain LMG 1590 plasmid unnamed1, complete sequence	17913-17942	7	0.767
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	MF403008	Agrobacterium phage Atu_ph07, complete genome	72414-72443	7	0.767
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	KF301602	Caulobacter phage Cr30, complete genome	36334-36363	7	0.767
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	NC_019515	Bacillus phage BCD7, complete genome	85299-85328	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MH807820	Dickeya phage Coodle, complete genome	68113-68142	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MN813053	Dickeya phage Ds25CZ, complete genome	65840-65869	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MN813049	Dickeya phage Ds9CZ, complete genome	67602-67631	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KM209320	Dickeya phage phiDP23.1 clone pD23.contig.46_1 genomic sequence	45442-45471	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KM209228	Dickeya phage phiD3, complete genome	66852-66881	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MN788369	Dickeya phage Ds3CZ, complete genome	68127-68156	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KY942057	Dickeya phage XF4, complete genome	67069-67098	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MN813052	Dickeya phage Ds23CZ, complete genome	65160-65189	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	HE600015	Dickeya phage vB_DsoM_LIMEstone1 complete genome	66662-66691	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MH807812	Dickeya phage Kamild, complete genome	67650-67679	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KY942056	Dickeya phage JA15, complete genome	67098-67127	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MG266157	Dickeya phage PP35, complete genome	67117-67146	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KJ716335	Dickeya phage RC-2014, complete genome	42139-42168	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	KM209270	Dickeya phage phiDP10.3 clone pD10.contig.41_1 genomic sequence	109781-109810	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MN813050	Dickeya phage Ds16CZ, complete genome	67105-67134	7	0.767
NZ_CP047141_1	1.22\|1106639\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106639-1106668	30	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	133113-133142	7	0.767
NZ_CP047141_2	2.8\|1116848\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116848-1116877	30	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	78360-78389	7	0.767
NZ_CP047141_1	1.2\|1105317\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105317-1105346	30	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	10325-10354	8	0.733
NZ_CP047141_1	1.6\|1105581\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105581-1105610	30	MG945597	UNVERIFIED: Microviridae sp. isolate 4321-1602, complete genome	2156-2185	8	0.733
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	NZ_CP012104	Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence	2772-2802	8	0.742
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	MN692960	Marine virus AFVG_117M7, complete genome	18480-18510	8	0.742
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	MN692988	Marine virus AFVG_117M76, complete genome	20860-20890	8	0.742
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	MN692956	Marine virus AFVG_117M88, complete genome	20341-20371	8	0.742
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	MN692984	Marine virus AFVG_117M10, complete genome	18985-19015	8	0.742
NZ_CP047141_1	1.8\|1105713\|31\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105713-1105743	31	MN692974	Marine virus AFVG_117M89, complete genome	18409-18439	8	0.742
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	NZ_KY978631	Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence	67899-67928	8	0.733
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	NZ_CP008900	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence	12937-12966	8	0.733
NZ_CP047141_1	1.9\|1105780\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105780-1105809	30	NZ_CP043384	Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001 plasmid p1_045001, complete sequence	2919-2948	8	0.733
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	NZ_CP019880	Komagataeibacter nataicola strain RZS01 plasmid pKNA05, complete sequence	15489-15518	8	0.733
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	NZ_CP019880	Komagataeibacter nataicola strain RZS01 plasmid pKNA05, complete sequence	38028-38057	8	0.733
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MN183282	Arthrobacter phage Qui, complete genome	97148-97177	8	0.733
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	MT771347	Arthrobacter phage Paella, complete genome	97160-97189	8	0.733
NZ_CP047141_1	1.12\|1105978\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1105978-1106007	30	NC_021772	Salmonella phage FSL SP-058, complete genome	70113-70142	8	0.733
NZ_CP047141_1	1.15\|1106176\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106176-1106205	30	MK448875	Streptococcus phage Javan210, complete genome	14108-14137	8	0.733
NZ_CP047141_1	1.15\|1106176\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106176-1106205	30	NZ_CP033790	Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence	28276-28305	8	0.733
NZ_CP047141_1	1.15\|1106176\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106176-1106205	30	KX227758	Bacillus phage PfNC7401, complete genome	11293-11322	8	0.733
NZ_CP047141_1	1.15\|1106176\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106176-1106205	30	KX227759	Bacillus phage PfIS075, complete genome	7983-8012	8	0.733
NZ_CP047141_1	1.15\|1106176\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106176-1106205	30	NC_016772	Bacillus cereus NC7401 plasmid pNC1, complete sequence	25329-25358	8	0.733
NZ_CP047141_2	2.7\|1116782\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116782-1116811	30	NZ_CP026494	Escherichia coli strain HS13-1 plasmid pHS13-1-IncF, complete sequence	3066-3095	8	0.733
NZ_CP047141_2	2.7\|1116782\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116782-1116811	30	NZ_CP042245	Escherichia coli strain PU-1 plasmid pColV-PU1, complete sequence	146348-146377	8	0.733
NZ_CP047141_2	2.7\|1116782\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116782-1116811	30	NZ_CP041299	Escherichia coli O1:H42 strain CLSC36 plasmid pCys-1, complete sequence	146813-146842	8	0.733
NZ_CP047141_2	2.7\|1116782\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116782-1116811	30	NZ_CP025329	Escherichia coli strain ExPEC XM plasmid unnamed	62335-62364	8	0.733
NZ_CP047141_1	1.1\|1105250\|31\|NZ_CP047141\|CRISPRCasFinder,CRT	1105250-1105280	31	NC_015708	Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster	56761-56791	9	0.71
NZ_CP047141_1	1.16\|1106242\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106242-1106271	30	NZ_CP016356	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 plasmid pL11434-1, complete sequence	99902-99931	9	0.7
NZ_CP047141_1	1.16\|1106242\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106242-1106271	30	NZ_CP014988	Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence	61647-61676	9	0.7
NZ_CP047141_1	1.25\|1106837\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106837-1106866	30	NZ_CP022220	Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence	345024-345053	9	0.7
NZ_CP047141_1	1.25\|1106837\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106837-1106866	30	NZ_CP030052	Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence	937069-937098	9	0.7
NZ_CP047141_1	1.25\|1106837\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1106837-1106866	30	NZ_CP030054	Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence	137373-137402	9	0.7
NZ_CP047141_2	2.7\|1116782\|30\|NZ_CP047141\|CRISPRCasFinder,CRT,PILER-CR	1116782-1116811	30	HM452126	Aeromonas phage phiAS5, complete genome	1609-1638	9	0.7
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	20813-20842	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	20794-20823	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	20794-20823	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	20794-20823	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP021126	Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence	20960-20989	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	20794-20823	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	20794-20823	10	0.667
NZ_CP047141_2	2.1\|1116385\|30\|NZ_CP047141\|CRISPRCasFinder,CRT	1116385-1116414	30	CP007642	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence	20964-20993	10	0.667

1. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN855743 (Bacteriophage sp. isolate 332, complete genome) position: , mismatch: 5, identity: 0.833

atgacgtaaaa-gaaatcatcgatgaatacg	CRISPR spacer
-caacggaaaaggaaatcaacgatgaatacg	Protospacer
 ..*** **** ******* ***********

2. spacer 1.17|1106308|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 5, identity: 0.833

-acagttgccttaatgtctgtcgtgccagta	CRISPR spacer
gactg-cgccttaatctctgtcgtgccagtc	Protospacer
 ** * .******** **************

3. spacer 1.23|1106705|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 5, identity: 0.833

ttaccgatttgaacatatgcactttgaggt	CRISPR spacer
ataccgatttgatcatatgcattttgatat	Protospacer
 *********** ********.***** .*

4. spacer 1.23|1106705|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 5, identity: 0.833

ttaccgatttgaacatatgcactttgaggt	CRISPR spacer
ataccgatttgatcatatgcattttgatat	Protospacer
 *********** ********.***** .*

5. spacer 2.6|1116716|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 5, identity: 0.833

-ttcgcatatgcacaaagaagattaactaaa	CRISPR spacer
aagcccata-gcacaaagaagattagctaaa	Protospacer
   * **** ***************.*****

6. spacer 2.6|1116716|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 5, identity: 0.833

-ttcgcatatgcacaaagaagattaactaaa	CRISPR spacer
aagcccata-gcacaaagaagattagctaaa	Protospacer
   * **** ***************.*****

7. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN694340 (Marine virus AFVG_250M926, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcattcacggcg	Protospacer
*************** ******* ** ..

8. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN694797 (Marine virus AFVG_250M7, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcatttacagca	Protospacer
*************** ******* ** ..

9. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN694733 (Marine virus AFVG_250M925, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcattcacggcg	Protospacer
*************** ******* ** ..

10. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN693955 (Marine virus AFVG_250M927, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcattcacggcg	Protospacer
*************** ******* ** ..

11. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN693622 (Marine virus AFVG_250M928, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcattcacggcg	Protospacer
*************** ******* ** ..

12. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN694168 (Marine virus AFVG_250M750, complete genome) position: , mismatch: 6, identity: 0.8

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
gctaaaccatcaacaccatcatttacagca	Protospacer
*************** ******* ** ..

13. spacer 1.13|1106044|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024339 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4) position: , mismatch: 6, identity: 0.8

accttatttccctttgcatcttgtaaattt	CRISPR spacer
gagctatttctctttgcatcttgaaaattt	Protospacer
.  .******.************ ******

14. spacer 1.16|1106242|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 6, identity: 0.8

atcaacacaaacagcgcgatagctcctttg	CRISPR spacer
atctcggcaaacagcgcgatatcttctttg	Protospacer
***   .************** **.*****

15. spacer 1.16|1106242|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

--atcaacacaaacagcgcgatagctcctttg	CRISPR spacer
ttatcg--acaaacagcgctatagcgcctttc	Protospacer
  ***.  *********** ***** *****

16. spacer 2.8|1116848|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 6, identity: 0.8

tgtggaagaagaaggcggagctaacccacc	CRISPR spacer
aggggaagaagaaggcggaggtaccccccg	Protospacer
 * ***************** ** *** *

17. spacer 2.8|1116848|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 6, identity: 0.8

tgtggaagaagaaggcggagctaacccacc	CRISPR spacer
aggggaagaagaaggcggaggtaccccccg	Protospacer
 * ***************** ** *** *

18. spacer 2.8|1116848|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 6, identity: 0.8

tgtggaagaagaaggcggagctaacccacc	CRISPR spacer
aggggaagaagaaggcggaggtaccccccg	Protospacer
 * ***************** ** *** *

19. spacer 2.8|1116848|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 6, identity: 0.8

tgtggaagaagaaggcggagctaacccacc	CRISPR spacer
aggggaagaagaaggcggaggtaccccccg	Protospacer
 * ***************** ** *** *

20. spacer 1.2|1105317|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to LG146436 (KR 1020160044964-A/1: Bacteriophage PM-1 and vegetable soft rot controlling composition containing the same) position: , mismatch: 7, identity: 0.767

gagttagttgatgttgtggggataaatgct	CRISPR spacer
gagttagttaatgttgtggggaactccgcg	Protospacer
*********.************    .**

21. spacer 1.2|1105317|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KF534715 (Pectobacterium phage PM1, complete genome) position: , mismatch: 7, identity: 0.767

gagttagttgatgttgtggggataaatgct	CRISPR spacer
gagttagttaatgttgtggggaactccgcg	Protospacer
*********.************    .**

22. spacer 1.2|1105317|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KY087898 (Pectobacterium phage PP101, complete genome) position: , mismatch: 7, identity: 0.767

gagttagttgatgttgtggggataaatgct	CRISPR spacer
gagttagttaatgttgtggggaactccgcg	Protospacer
*********.************    .**

23. spacer 1.6|1105581|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_014124 (Pseudomonas putida plasmid pDK1, complete sequence) position: , mismatch: 7, identity: 0.767

tgctgatgttgctcatga----tccaagatttaa	CRISPR spacer
tgctgatgttgctcatgaaccgtccgcaat----	Protospacer
******************    ***. .**

24. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015165 (Acetobacter ascendens strain LMG 1590 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
gtgacgaaaaagaaatcatcgaattaaagg	Protospacer
.***** ***************   * * *

25. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 7, identity: 0.767

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
gggttgtaaaagaagtcattgatgaatatg	Protospacer
. * .*********.****.********.*

26. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KF301602 (Caulobacter phage Cr30, complete genome) position: , mismatch: 7, identity: 0.767

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
aaggatcaaaagaaatcctctatgaatacg	Protospacer
* *.  .********** ** *********

27. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_019515 (Bacillus phage BCD7, complete genome) position: , mismatch: 7, identity: 0.767

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
gtaatgtaaaagcaatcattgatgaatata	Protospacer
.*.*.******* ******.********..

28. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MH807820 (Dickeya phage Coodle, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

29. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN813053 (Dickeya phage Ds25CZ, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

30. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN813049 (Dickeya phage Ds9CZ, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

31. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KM209320 (Dickeya phage phiDP23.1 clone pD23.contig.46_1 genomic sequence) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

32. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KM209228 (Dickeya phage phiD3, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

33. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN788369 (Dickeya phage Ds3CZ, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

34. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KY942057 (Dickeya phage XF4, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

35. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN813052 (Dickeya phage Ds23CZ, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

36. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to HE600015 (Dickeya phage vB_DsoM_LIMEstone1 complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

37. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MH807812 (Dickeya phage Kamild, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

38. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KY942056 (Dickeya phage JA15, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

39. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MG266157 (Dickeya phage PP35, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

40. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KJ716335 (Dickeya phage RC-2014, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

41. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KM209270 (Dickeya phage phiDP10.3 clone pD10.contig.41_1 genomic sequence) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

42. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN813050 (Dickeya phage Ds16CZ, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

43. spacer 1.22|1106639|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 7, identity: 0.767

agtcaaggcgttacaagaaacagacgctta	CRISPR spacer
tattaaggcgatacaagatacagacgccaa	Protospacer
 .*.****** ******* ********. *

44. spacer 2.8|1116848|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.767

tgtggaagaagaaggcggagctaacccacc	CRISPR spacer
aggggaagaagaaggcggaggtaccctccg	Protospacer
 * ***************** ** **. *

45. spacer 1.2|1105317|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gagttagttgatgttgtggggataaatgct	CRISPR spacer
gagttaattcatgttgtggggatgcgtcaa	Protospacer
******.** *************. .*

46. spacer 1.6|1105581|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MG945597 (UNVERIFIED: Microviridae sp. isolate 4321-1602, complete genome) position: , mismatch: 8, identity: 0.733

tgctgatgttgctcatgatccaagatttaa	CRISPR spacer
tgctgatgttgctcctgatcctgctcttgt	Protospacer
************** ****** .  .**.

47. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012104 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-5, complete sequence) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
attcaaagtaacgttatttgctgtacggaca	Protospacer
************..**********   * .

48. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN692960 (Marine virus AFVG_117M7, complete genome) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
acctgctgtaacactatttgttgttaccttt	Protospacer
*....  *************.****** ***

49. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN692988 (Marine virus AFVG_117M76, complete genome) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
acctgctgtaacactatttgttgttaccttt	Protospacer
*....  *************.****** ***

50. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN692956 (Marine virus AFVG_117M88, complete genome) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
acctgctgtaacactatttgttgttaccttt	Protospacer
*....  *************.****** ***

51. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN692984 (Marine virus AFVG_117M10, complete genome) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
acctgctgtaacactatttgttgttaccttt	Protospacer
*....  *************.****** ***

52. spacer 1.8|1105713|31|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN692974 (Marine virus AFVG_117M89, complete genome) position: , mismatch: 8, identity: 0.742

attcaaagtaacactatttgctgttacgttt	CRISPR spacer
acctgctgtaacactatttgttgttaccttt	Protospacer
*....  *************.****** ***

53. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY978631 (Klebsiella pneumoniae strain 447 plasmid p447-IMP, complete sequence) position: , mismatch: 8, identity: 0.733

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
aaaggttacaaaaaatcatcgatgaataca	Protospacer
* ..  ** **.*****************.

54. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008900 (Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-d4a, complete sequence) position: , mismatch: 8, identity: 0.733

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
aaagattacaaaaaatcatcgatgaataca	Protospacer
* ..  ** **.*****************.

55. spacer 1.9|1105780|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043384 (Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001 plasmid p1_045001, complete sequence) position: , mismatch: 8, identity: 0.733

atgacgtaaaagaaatcatcgatgaatacg	CRISPR spacer
aaagattacaaaaaatcatcgatgaataca	Protospacer
* ..  ** **.*****************.

56. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019880 (Komagataeibacter nataicola strain RZS01 plasmid pKNA05, complete sequence) position: , mismatch: 8, identity: 0.733

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
ttgtaaccatcaacagcaccagtgaccaag	Protospacer
 .  **************.** ******

57. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019880 (Komagataeibacter nataicola strain RZS01 plasmid pKNA05, complete sequence) position: , mismatch: 8, identity: 0.733

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
ttgtaaccatcaacagcaccagtgaccaag	Protospacer
 .  **************.** ******

58. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MN183282 (Arthrobacter phage Qui, complete genome) position: , mismatch: 8, identity: 0.733

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
agctacccatcaacaccatcattgacgatg	Protospacer
. . * ********* ********** **

59. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MT771347 (Arthrobacter phage Paella, complete genome) position: , mismatch: 8, identity: 0.733

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
agctacccatcaacaccatcattgacgatg	Protospacer
. . * ********* ********** **

60. spacer 1.12|1105978|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 8, identity: 0.733

gctaaaccatcaacagcatcattgaccatt	CRISPR spacer
ttcaatccatcaacatcatcattgacgaga	Protospacer
 ..** ********* ********** *

61. spacer 1.15|1106176|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to MK448875 (Streptococcus phage Javan210, complete genome) position: , mismatch: 8, identity: 0.733

atcatatgggtttcttggtgggttataact	CRISPR spacer
gctatatggatttcttggcgggttatatga	Protospacer
...******.********.********

62. spacer 1.15|1106176|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033790 (Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

atcatatgggtttcttggtgggttataact	CRISPR spacer
actgtatggatttcgtggtgggttatatga	Protospacer
*...*****.**** ************

63. spacer 1.15|1106176|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KX227758 (Bacillus phage PfNC7401, complete genome) position: , mismatch: 8, identity: 0.733

atcatatgggtttcttggtgggttataact	CRISPR spacer
actgtatggatttcgtggtgggttatatga	Protospacer
*...*****.**** ************

64. spacer 1.15|1106176|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to KX227759 (Bacillus phage PfIS075, complete genome) position: , mismatch: 8, identity: 0.733

atcatatgggtttcttggtgggttataact	CRISPR spacer
actgtatggatttcgtggtgggttatatga	Protospacer
*...*****.**** ************

65. spacer 1.15|1106176|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NC_016772 (Bacillus cereus NC7401 plasmid pNC1, complete sequence) position: , mismatch: 8, identity: 0.733

atcatatgggtttcttggtgggttataact	CRISPR spacer
actgtatggatttcgtggtgggttatatga	Protospacer
*...*****.**** ************

66. spacer 2.7|1116782|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026494 (Escherichia coli strain HS13-1 plasmid pHS13-1-IncF, complete sequence) position: , mismatch: 8, identity: 0.733

tgagcacttgctttgccattaccaatcatt	CRISPR spacer
attatttttgctttgccattaccaatcgtt	Protospacer
   .. .********************.**

67. spacer 2.7|1116782|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042245 (Escherichia coli strain PU-1 plasmid pColV-PU1, complete sequence) position: , mismatch: 8, identity: 0.733

tgagcacttgctttgccattaccaatcatt	CRISPR spacer
attatttttgctttgccattaccaatcgtt	Protospacer
   .. .********************.**

68. spacer 2.7|1116782|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041299 (Escherichia coli O1:H42 strain CLSC36 plasmid pCys-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgagcacttgctttgccattaccaatcatt	CRISPR spacer
attatttttgctttgccattaccaatcgtt	Protospacer
   .. .********************.**

69. spacer 2.7|1116782|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025329 (Escherichia coli strain ExPEC XM plasmid unnamed) position: , mismatch: 8, identity: 0.733

tgagcacttgctttgccattaccaatcatt	CRISPR spacer
attatttttgctttgccattaccaatcgtt	Protospacer
   .. .********************.**

70. spacer 1.1|1105250|31|NZ_CP047141|CRISPRCasFinder,CRT matches to NC_015708 (Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster) position: , mismatch: 9, identity: 0.71

acataggcctttagccattagactaacaatg	CRISPR spacer
agcagagcctttagccactatactaacaaaa	Protospacer
*   ..***********.** ******** .

71. spacer 1.16|1106242|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016356 (Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 plasmid pL11434-1, complete sequence) position: , mismatch: 9, identity: 0.7

atcaacacaaacagcgcgatagctcctttg	CRISPR spacer
atcaacccaaacagcgcgacagccatgggt	Protospacer
****** ************.***. .

72. spacer 1.16|1106242|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014988 (Lactobacillus paracasei strain IIA plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

atcaacacaaacagcgcgatagctcctttg	CRISPR spacer
atcaacccaaacagcgcgacagccatgggt	Protospacer
****** ************.***. .

73. spacer 1.25|1106837|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022220 (Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggtgagagcttagccacaatcgtcggt	CRISPR spacer
caaggtgagaccttagcgacaatcaggatg	Protospacer
 ********* ****** ******.  .

74. spacer 1.25|1106837|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030052 (Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggtgagagcttagccacaatcgtcggt	CRISPR spacer
caaggtgagaccttagcgacaatcaggatg	Protospacer
 ********* ****** ******.  .

75. spacer 1.25|1106837|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030054 (Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaggtgagagcttagccacaatcgtcggt	CRISPR spacer
caaggtgagaccttagcgacaatcaggatg	Protospacer
 ********* ****** ******.  .

76. spacer 2.7|1116782|30|NZ_CP047141|CRISPRCasFinder,CRT,PILER-CR matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 9, identity: 0.7

tgagcacttgctttgccattaccaatcatt	CRISPR spacer
gcagcacttgctttgctatcaccaacttcg	Protospacer
  **************.**.*****.. .

77. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

78. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

79. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

80. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

81. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP021126 (Rhizobium sp. Kim5 plasmid pRetKim5b, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

82. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

83. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

84. spacer 2.1|1116385|30|NZ_CP047141|CRISPRCasFinder,CRT matches to CP007642 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803a, complete sequence) position: , mismatch: 10, identity: 0.667

aaaatctacgccagacgatctacaaacatc	CRISPR spacer
gtgtctcccgccagacgatctacaatcatt	Protospacer
. . ... ***************** ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

413054 : 420003

Enterococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010688506.1\|413054_414005_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	4.1e-126	68.4
WP_066023502.1\|414020_416192_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.3e-257	62.1
WP_035448459.1\|416181_416556_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A1W6JK40	Lactococcus_phage	6.2e-14	43.7
WP_004051414.1\|416552_416783_-	glutaredoxin-like protein NrdH	X2KRY7	Enterococcus_phage	8.0e-12	39.0
WP_035448457.1\|416951_417539_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XCL7	Enterococcus_phage	5.4e-28	50.9
WP_066023497.1\|417778_418954_+	acetate kinase	NA	NA	NA	NA
WP_035448453.1\|419031_420003_+	ribose-phosphate pyrophosphokinase	A0A1V0SKK7	Klosneuvirus	1.1e-33	31.5

DBSCAN-SWA_2

1055767 : 1064900

Streptococcus_phage(50.0%)

integrase

attL 1055670:1055708|attR 1071330:1071368

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1055670:1055708	attL	NA	NA	NA	NA
WP_066023948.1\|1055767_1056898_-\|integrase	site-specific integrase	Q38159	Streptococcus_phage	1.5e-55	36.0
WP_066023949.1\|1057435_1058272_-	helix-turn-helix transcriptional regulator	A0A1S5S8S8	Streptococcus_phage	1.8e-05	39.4
WP_066023950.1\|1058402_1058594_+	hypothetical protein	NA	NA	NA	NA
WP_066023951.1\|1058615_1059398_+	hypothetical protein	Q9AZJ5	Lactococcus_phage	5.3e-15	30.0
WP_066023952.1\|1059381_1059669_+	hypothetical protein	NA	NA	NA	NA
WP_066023953.1\|1059741_1060581_+	helix-turn-helix domain-containing protein	E9LUL6	Lactobacillus_phage	1.3e-14	37.8
WP_066023955.1\|1060965_1061331_+	hypothetical protein	NA	NA	NA	NA
WP_066023956.1\|1061311_1061620_+	hypothetical protein	NA	NA	NA	NA
WP_066023957.1\|1061714_1062092_+	hypothetical protein	NA	NA	NA	NA
WP_066023958.1\|1062094_1062337_+	hypothetical protein	NA	NA	NA	NA
WP_066023959.1\|1062356_1062707_+	hypothetical protein	NA	NA	NA	NA
WP_066023960.1\|1062703_1063507_+	hypothetical protein	I7A9C3	Enterococcus_phage	7.4e-20	30.6
WP_066023961.1\|1063487_1064900_+	DNA primase	A7J282	Streptococcus_phage	2.8e-38	25.4
1071330:1071368	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1295768 : 1354597

Erysipelothrix_phage(62.07%)

protease,tail,head,capsid,portal,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_066024040.1\|1295768_1296644_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_066024041.1\|1296811_1297648_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_066024042.1\|1297707_1298715_-	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	4.4e-62	45.2
WP_066024043.1\|1298903_1299551_+	nitrobenzoate reductase	NA	NA	NA	NA
WP_066024044.1\|1299606_1300032_-	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	3.3e-27	42.0
WP_066024045.1\|1300099_1300462_+	hypothetical protein	NA	NA	NA	NA
WP_005922582.1\|1301277_1301544_-	hypothetical protein	NA	NA	NA	NA
WP_143452063.1\|1301637_1301805_-	M20 family metallopeptidase	NA	NA	NA	NA
WP_033193012.1\|1302184_1302487_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_010689503.1\|1302455_1302716_-	hypothetical protein	NA	NA	NA	NA
WP_010689504.1\|1302978_1303404_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_035447435.1\|1303418_1304408_-	iron ABC transporter permease	NA	NA	NA	NA
WP_143452064.1\|1304404_1305403_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_035447438.1\|1305412_1306330_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_035447624.1\|1306342_1307128_-	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	1.8e-18	30.6
WP_083213898.1\|1308140_1308731_-	hypothetical protein	NA	NA	NA	NA
WP_052006330.1\|1308974_1309250_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016174972.1\|1309494_1309728_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_066024046.1\|1309790_1311638_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.3e-99	36.1
WP_005917836.1\|1311688_1311991_-	hypothetical protein	NA	NA	NA	NA
WP_066024047.1\|1312176_1312926_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_066024048.1\|1315050_1318170_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.4e-68	28.4
WP_000691721.1\|1318578_1320498_-	tetracycline resistance ribosomal protection protein Tet(W)	E4ZFJ7	Streptococcus_phage	0.0e+00	100.0
WP_066024049.1\|1321980_1322943_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_066024050.1\|1322932_1324465_-	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	3.2e-56	30.0
WP_066024051.1\|1324492_1326316_-	AAA family ATPase	NA	NA	NA	NA
WP_066024052.1\|1326308_1326752_-	hypothetical protein	NA	NA	NA	NA
WP_066024053.1\|1326741_1327773_-	hypothetical protein	NA	NA	NA	NA
WP_066024054.1\|1328156_1328687_+	hypothetical protein	NA	NA	NA	NA
WP_066024055.1\|1328763_1328964_+	hypothetical protein	NA	NA	NA	NA
WP_066024056.1\|1328950_1329259_+	hypothetical protein	NA	NA	NA	NA
WP_066024057.1\|1329258_1330398_+	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	7.5e-111	52.8
WP_066024116.1\|1330378_1330963_+	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	1.2e-59	63.4
WP_066024058.1\|1331017_1332952_+	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	7.7e-233	61.0
WP_066024059.1\|1333052_1333481_+	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	1.2e-21	35.4
WP_066024060.1\|1333477_1335736_+	DNA primase	A0A1X9I6B6	Streptococcus_phage	1.5e-211	48.7
WP_066024061.1\|1335980_1336262_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.1e-23	60.0
WP_066024062.1\|1336242_1337601_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	1.3e-157	67.8
WP_066024063.1\|1337597_1338068_+	restriction endonuclease	NA	NA	NA	NA
WP_083213901.1\|1338210_1338588_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	1.3e-35	56.4
WP_066024064.1\|1338730_1339273_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.9e-59	62.1
WP_066024065.1\|1339272_1340514_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	9.3e-155	64.1
WP_066024066.1\|1340576_1341227_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	1.6e-41	42.9
WP_066024067.1\|1341247_1341454_+	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_083213904.1\|1341555_1343121_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	9.6e-250	78.2
WP_083213902.1\|1343117_1344377_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	1.6e-154	64.6
WP_066024069.1\|1344373_1345048_+\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	9.1e-56	55.1
WP_066024070.1\|1345067_1346258_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	2.6e-130	58.5
WP_066024071.1\|1346268_1346565_+\|head,tail	phage gp6-like head-tail connector protein	A0A1X9I695	Streptococcus_phage	1.3e-06	40.9
WP_066024072.1\|1346564_1346954_+\|head	phage head closure protein	NA	NA	NA	NA
WP_066024073.1\|1346958_1347366_+\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.2e-37	62.3
WP_143452067.1\|1347377_1348277_+	1,4-beta-N-acetylmuramidase	Q0SPG7	Clostridium_phage	2.3e-14	34.7
WP_161517660.1\|1348378_1348546_+	hypothetical protein	NA	NA	NA	NA
WP_066024074.1\|1348608_1350126_+	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	4.8e-105	40.8
WP_066024075.1\|1350131_1350545_+	hypothetical protein	A0A2K5B2B3	Erysipelothrix_phage	4.3e-16	37.7
WP_066024076.1\|1350545_1352126_+	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	3.1e-131	49.0
WP_066024077.1\|1352175_1353033_-	Mrr restriction system protein	NA	NA	NA	NA
WP_066024078.1\|1353217_1354597_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-122	48.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047141

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection