CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022314	Mycobacterium xenopi strain JCM 15661	3 crisprs	DEDDh,RT,cas3,c2c9_V-U4,csa3,casR,DinG,cas4,WYL	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022314_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022314_1

2002678-2002775

Orphan

Consensus_repeat	Method
TCCGCCGACGCGCAGCGAACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022314_1

>merge|NZ_AP022314|1|2002678-2002775|CRISPRCasFinder
TCCGCCGACGCGCAGCGAACCACTGGCGACAGGCCGGCAGGTGAGCGCCCGTCCGCAGGTGAGCGCCCGGCTGACTCCGGCGACGCGCAGCGAACCAC

>NZ_AP022314|1|1|2002678-2002775|CRISPRCasFinder
TCCGCCGACGCGCAGCGAACCAC	TGGCGACAGGCCGGCAGGTGAGCGCCCGTCCGCAGGTGAGCGCCCGGCTGAC
TCCGGCGACGCGCAGCGAACCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022314.1\|WP_161552070.1\|2008648_2014534_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_AP022314.1\|WP_085193425.1\|1997476_1997716_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193431.1\|1996082_1996334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193413.1\|2004766_2005345_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193433.1\|1994726_1995023_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_AP022314.1\|WP_085193411.1\|2005341_2005683_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193578.1\|2002985_2004419_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_AP022314.1\|WP_085193409.1\|2005685_2006057_+\|HK97-gp10-family-phage-protein	unknown	unknown	gnl\|CDD\|377415
NZ_AP022314.1\|WP_085193419.1\|2000554_2001943_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NZ_AP022314.1\|WP_085193580.1\|1998283_1998685_+\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|226270
NZ_AP022314.1\|WP_085193399.1\|2014533_2014725_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193407.1\|2006053_2006488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_161552069.1\|1995860_1995998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193427.1\|1997018_1997477_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193405.1\|2007768_2008287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193429.1\|1996352_1996706_+\|DUF1870-family-protein	unknown	unknown	gnl\|CDD\|286104
NZ_AP022314.1\|WP_161552164.1\|1997841_1998042_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_AP022314.1\|WP_085193421.1\|1998638_2000384_+\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NZ_AP022314.1\|WP_085193415.1\|2004498_2004774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193575.1\|2008258_2008630_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022314.1\|WP_085193580.1\|1998283_1998685_+\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|226270	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair].	1.30236e-35
NZ_AP022314.1\|WP_161552070.1\|2008648_2014534_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	2.65059e-41
NZ_AP022314.1\|WP_085193578.1\|2002985_2004419_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	4.70281e-54
NZ_AP022314.1\|WP_085193433.1\|1994726_1995023_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	7.08582e-06
NZ_AP022314.1\|WP_085193429.1\|1996352_1996706_+\|DUF1870-family-protein	gnl\|CDD\|286104	pfam08965, DUF1870, Domain of unknown function (DUF1870). This domain is found in a set of hypothetical bacterial proteins. It contains a helix-turn-helix domain so may be a DNA-binding protein.	3.40283e-05
NZ_AP022314.1\|WP_085193419.1\|2000554_2001943_+\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	2.66483e-24
NZ_AP022314.1\|WP_085193421.1\|1998638_2000384_+\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	3.03031e-102
NZ_AP022314.1\|WP_085193409.1\|2005685_2006057_+\|HK97-gp10-family-phage-protein	gnl\|CDD\|377415	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component. This family of proteins is found in the caudovirales. It may be a tail component.	8.43197e-05
NZ_AP022314.1\|WP_161552164.1\|1997841_1998042_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	1.20886e-09

>NZ_AP022314.1|WP_085193419.1|2000554_2001943_+|phage-portal-protein
MNLLDRLKGGRRDRISTIDDYAQLWADFTYNGLSYGYGLTSSGINQTLVGQQTEMAPNTFVGLASHAYAANGVVFACMLVRQLVFSSVRFTYQRLRNGKPSDTFGTPDLRILERPWPNGTTQDLLVRMIQDADLAGNAYLTRQGDEIVRLRPDWVHIAVEERQMRDGRGQIGWRKVGYLYTEGGPGSNNDPVALLPDEVVHFCPIPDPLANFRGMSWLTPILREIQADQAMTRHQRKFFDHGATPNMVIKHDAGATIDKIKKFAQEMKDEFGGVENAYKTLHLYPGADATVVGANLRQIDFKTVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLAGSLQPILPSQGPDTRLWYDASDVPFLREDEKDAADIAATKAATINSYITAGYEPDSVVAAVEANDLRLLVHSGMYSVQLQQPGQNSAPADAGQLQGGSLNGATVN
>NZ_AP022314.1|WP_085193421.1|1998638_2000384_+|terminase-large-subunit
MTARATRSRAAKKPVRRRGWADADLERLKLSPEVAWYLESRGYRPPTCPPLIKTPEPRNVRGAVFDPGRVDHVIASFRRLRHTKGRFAGQPFEPDCWQVAYYLAPVFGWVAKSRDSGEYARIITTAWVELPRKNGKTQTASGTALYLTGADNEPGAQVVCAATNKDQAKFAFDPMKQTVRGSPALTKHFDAFQSKIIHKASGSVFEPVANVGDAQHGRDLHGGIIDEVHLHKTNDLIEAIETGTGSRIQPLILFITTADAGRRHTPYDEKRTRIEKLARGVLKDPTTYGVVFAAEPGDDPFAESTWKKANPGYGISPTKRFMQTAANKAKDSPAELASFLRLHLGIRTKQQTRFLDLGAWDNNASIVDMSRLKGRRCFGGLDLGSTSDLTALAWVFPDEAGCFDVLLRCWAPEDSIENLDSRTAGAASVWVKQGWLATTPGNVTDYDFIEEQINRDRDEFLVQEIAYDRWNAQQLVNDLMADGAPMITMGQGFASMSAPTKDLQRLILTGTPENPVIRHGGNPLLRWMVDNFAVAMDPAGNVKPDKVNAGDKIDGVVALIMALSRAIANQPQETEVWGMLM
>NZ_AP022314.1|WP_085193580.1|1998283_1998685_+|phage-terminase-small-subunit-P27-family
MPQVPNFERGAPDPPEWLDDEARNLWQRVAPALDRLDLLKPEDREVFVAYCVAWSRFVSAVQTYQAEGMTVTNKRSGRVALHPAVTAAQQASRDLLRFAQDFGLTPAAELNLGKKPAGDDSESDPFAGGQEAG
>NZ_AP022314.1|WP_161552164.1|1997841_1998042_+|HNH-endonuclease
MRAAKLAANPVCEWPGCRRPAERVDHIVPLAEGGPRYAWTNLQALCRPHDIEKTTADALRGKTRAR
>NZ_AP022314.1|WP_085193425.1|1997476_1997716_+|hypothetical-protein
MAHLRITIDGNVAMNGDLGEWTTNPPTLLTEQLKANTKPAPWMRALMLTIADAAMTNRDLHANVHTRPDGWDLSVTTAT
>NZ_AP022314.1|WP_085193427.1|1997018_1997477_+|hypothetical-protein
MPNAAVAGLIAQRLPEGLLHPGDPNANQPAKLIPLPGLRSTGIPPEMAKQFAAQAGLPSHDVPKLIGEAIVYLLETEGFAIIPSTELEQLRTQAADAPDGTRIISVHCRCDTTRSKPLIHLTVDKTDQVITDGKALLQGLAKRGADCPHETR
>NZ_AP022314.1|WP_085193429.1|1996352_1996706_+|DUF1870-family-protein
MDGGELQTVREYLGLTIESLARMLDVNPRTIRSWEAGRDRIPERIRVEVEQIEAMTAKAVDELVDVLNAARDPAVYVYRRDEDMHAARPDTAHLPARWWRHVVARACQEVPGVVITS
>NZ_AP022314.1|WP_085193431.1|1996082_1996334_+|hypothetical-protein
MTTVKTDHGTYTGRSVDSIVRREYGRSAQARQSADPNSPIWGQVIKPGSDQRSRELRGLQQLAGYDHPQRDLQVLARIIWVDG
>NZ_AP022314.1|WP_161552069.1|1995860_1995998_+|hypothetical-protein
MSKRISPDQIFLSEARAGGLVILDDSVAAADATLTVAERKSRRNP
>NZ_AP022314.1|WP_085193433.1|1994726_1995023_+|helix-turn-helix-transcriptional-regulator
MERIPVEPLVLQWARKSAGFHDISLAAKRLGTSEMTVSKWEDGSLQPTIKQLRKIAKTYKRPLAVLLLPEPPKEFDALRDFRRIAGSEDVDMVASTRR
>NZ_AP022314.1|WP_085193578.1|2002985_2004419_+|phage-major-capsid-protein
MEELGELDQLNEDEDREFRELTAEFREVDEHRKRLERAAELAAIRTAAGQVPSRRLRVEAGSPSRSRDDYDRDAILEPDSIEDHRFRNPWDLSEVRTYGRPVDEVATELRSRALSAIEKMPGANDKIREAATSIIERFDDKNSSLARQCLATSSPVYLRAWAKMARTHQHLLTPEEARALDEVRAMSLTDNAGGYLVPFQLDPTVIITSDGSRNDIRQFARQVVATGDVWHGVSAGAVQWSWDGEATEVSDDSPTFDQPSIPVHKAAGFVPISIEALEDEANVAQEVGRLLAFGRDTLEAEAFITGSGSGQPKGVITAVSAATGSVVTAGGEQFTIDDVYAVYGALPARFRSNASWLANNLIYNQIRAFDQYGGAALWTQIGNDRPMQLLGRSLGEAEAMDGAVNPAATENNYVLLFGDFSHYVIADRVGMSVEFIPHLFGANRRPTGQRGWYAYYRVGADVTYPGAFRLLNVATAA
>NZ_AP022314.1|WP_085193415.1|2004498_2004774_+|hypothetical-protein
MAIVRATKPFTYWNNGVPRTVRAGDLFDTSDPCVKGRAGLFEPVEVAAARTASIEDATAEPGARRSVSTTRGRRKPASEPERDEPSAEGDA
>NZ_AP022314.1|WP_085193413.1|2004766_2005345_+|hypothetical-protein
MPDTDGELTTEDVQLYTKGRLNKDDDETKRLLNAALATCRRYCGWRVTPVKSEELTLDGPGGRRLSLPTLHLVELTSVIEDDVTLDLSGLQWSPLGFVRKKSGGCWSSDLGAITVTMTHGFEDAADWQAAVLELVDRMSAMPGAVVGNSGPLVEKTVDDVSYRWVLTIGQNPQLFDMLNHTLLDPYRLVPLA
>NZ_AP022314.1|WP_085193411.1|2005341_2005683_+|hypothetical-protein
MSFGGQTVTFVTLTDSGNPNRLGMKPQTSTEVPVAGCLFRPLSVKEVVGVNTDIATEIWKCTAPPVPAALAAKASGQLQVDGETYEIMGDPKPHPDLSGAIHHVTIMCQKQAG
>NZ_AP022314.1|WP_085193409.1|2005685_2006057_+|HK97-gp10-family-phage-protein
MSYGFDRFGVSDAEIEAAIAASAEVDAQLNAFMENEFVPAARNNAPIDHGAYAAGIKVTKQARGGKGQVGATHWTSHFIEYGTGSDPAGTHSRFGPNTPTPEFAPMQKTAEQFGGTLDDGDHR
>NZ_AP022314.1|WP_085193407.1|2006053_2006488_+|hypothetical-protein
MTIELLDEGATDAEEFVIAWLQPLARSASRRRVDDPLPFRLVNQVMGADDPYCGEDTAVVSVHTLCDATIDNAEDLAAQEADKTHRRMLYLARYPDTDVVLSDGRLANLDYMDVVQKPIWVDYDNIQILRKVGRYRIGLSYVAL
>NZ_AP022314.1|WP_085193405.1|2007768_2008287_+|hypothetical-protein
MPEIPDEIKHRHVVNAADAREQASEGRYSFLRSEFRRAKPTPEHPEGEVFEIPHKDLLDNEQQKRWDDLQDEMREYDREPDIVDPDGRVIAKGALVYPHRKNGKRIPTTWGERLAIVLWGKEGAARANAGGINFNEIEVIWGKQKIEMDRRLSADPKSGAGDPGVAPAPDRD
>NZ_AP022314.1|WP_085193575.1|2008258_2008630_+|hypothetical-protein
MWRQHPTEIEADLADRGHDILDWHRGIMSSRRLLVLLRHAPENGPYKTALREGKWPEFMQILAEIHKELALYRASHYVGSENEYTPKVFIDPVERRALADQQAEEEAASENFQNDLAAQMGWE
>NZ_AP022314.1|WP_161552070.1|2008648_2014534_+|phage-tail-tape-measure-protein
MPITIDVQARPDAASFKRAANEVEATFATAGKKAADAFGKGFSAGSKDIEDAARQYQTAYDKVADASGKAKTAETELQRLRDKAKDQAKEVEAAEKRLSNAREQEGRDSKTALDAERDLATARDRLARTNTQIVRTAEGLARSNREQARAAREATQAYRQLQEAQQRAGRGFESNAKGLISGFASQSSGLVGQLHSIGSAGGKAFIGGAIAAIVAGNFVQAVTDVARTAVGAMKDVFETGLDFDRVANKLQGVTRASAADMDRFRSVAKALGNDLTLPGVSAKDALDAMLELSKGGLGQQDVLKSVRGTLLLSTAAGISPTEAAQSQASVLQAFNLDPSQADRVADLLTAVQQAAPGEIPDFALALQQAGTVAHGFGISIEDTLATLGMFAKAGVVGSDAGTSFKTLLTHLANPSSESQEAIADLGLQLTDTQGNFIGMRNLIQQLGAAGARMRPDQFQADVAQLFGTDAIRGAMIAKDAGLKMFDQVMAEFARGGQAQQMGAAMMQGMPGIVEKVKNSIDSIKLSLSELFSSGGAQSFGNKLVEGLDSISAWIDSHKPEIIGFFTDFARIAVEAFGEVAHEAGIFLRAVGSAMSHLPGRFGEFGRSIRTAGKELVEFGTHTMPTLAHQIDVMGDRASQAARFARDLGDNIKLLPDGKTIVLKDNTAEVRANIDSTQYALENLPDGTVKIIPLTEEATLKAEAWRRQQGDQPATIPLNVNTEAATKQIQQFLAAAPKSIQITAQMAGIPGAPPAPTAPPKNLQDLLMPPAPPRRALGGIFDVYDSVASFADGKLPRHALLQPPVSGAGLVQWAEPSTGGEAFIPLNGGQRSIKIWAETGRLLGVFDEGGIRGWPSEPGTYVVTPDNIMTALQFAQSVSGRAPYGPAAGPTMYDCSGFMSAIYGILTGHGLPDGQRFFTTESDFTKLGFLPGYDPSSPFNIGVHHGGPGGGHMAGTLMGYNVESGGSHGGPLIGAGAAGATDPQFEEHYHLPGSMYGYGTGGAGGYFEPPDPKRVREAEQRVARADQRVAELEQQQRELKADAKESERMRLRDELANARQDAQDARADLAEARQGKYRSGGGGATSSFPGQIGAPIDQDFGLSKGLPGLAENLTKFFANLAFAPVLGALGAVSAAAGNPSGGGLIGIAASQPGSLFAAAGGFGGLLAGLGGPSAMGPAPLGGGGGMTVPGMGVGGLPGPGVPADAGGPAAGPTQIGGVAPAAGPGGGGFGGLGGMPMAAIQTAASGLNMLAPGAGIAAQIGIQEINRAIAYAGQVAGIGVQGLMETFLPTAGSQLAQNNWITRIVGGIAGARPQLPNTAGQSSMPSNKAPQQAQPLPQQNPGDGQPHQGSGNPPGPINITYNNNNATEAAAGPRPDVPPQQHVPRGHAVSAAVRYPANQVTPHGWYQLIKGDHPLVRLRAYDGSIDFDLMGGLSIPDRYSAPEAVHLVDLKGLIPPWRHVDQKGATEDGITQLDALYDPIEVEAKVMCRGRDPKHTRQVVRDLIASIDAKQQSEFSWLTHDLGYWWAPIRWFKGAPPDPLRGAQLDRQELTLRLRADSGFWRSYDDTATFRFAYDSMSDDFDVDHTSTQDLGPDWPQRYSGPGAGYCTSRGGQAVWAESGTDEREVVNGPYAGFDTDTDNQVIEIELGSIPEITFQGGCFNDLWGRMNRNPDGTWAGDGIRARIGLQGFFGWVELARFNNYVKTVLFERLMIIPPIFGEKFSLVCGVEGDPRMFRILRNGLPILSHKETGAGSALGADHRGVGFGMAAGAAEFGNQKSPAWVRRFNAGDNNTVSQSGFLARTNIGDQPMYDDYTLFGPGIFRIYDGPGSDEYVEFGPLLPNQVVFLRTDPRKRGAQVQDLTVVPPTPQQLNSFQQALVKFESFAFANNIPPLLQTINSLFGIKPPQGNMYSLLKGRFSNRAAIPPKSPGNPAKPYFVKVAIDDGNADSKIIASGTPLRRYPI
>NZ_AP022314.1|WP_085193399.1|2014533_2014725_+|hypothetical-protein
MAAIIVLEPGTPRTGLWCPKCMLPSGYEVALYGLFESGPRTVAWARRCYDCGAKLPAGDEDRQ

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Click the colored protein region to show detailed information

Crispr_ID: NZ_AP022314_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022314_2

3270151-3270231

Orphan

Consensus_repeat	Method
AGCCCGGTGACGATGCGGGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022314_2

>merge|NZ_AP022314|2|3270151-3270231|CRISPRCasFinder
AGCCCGGTGACGATGCGGGTCGGCACGACCCGAGGAGGAGCCGGGCAATTCAAACACGAGCCCGGTGACGATGCGGGTCGG

>NZ_AP022314|2|2|3270151-3270231|CRISPRCasFinder
AGCCCGGTGACGATGCGGGTCGG	CACGACCCGAGGAGGAGCCGGGCAATTCAAACACG
AGCCCGGTGACGATGCGGGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022314.1\|WP_085197000.1\|3261411_3262602_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_AP022314.1\|WP_085195059.1\|3272684_3273248_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378485
NZ_AP022314.1\|WP_039889533.1\|3259322_3260303_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_AP022314.1\|WP_085196998.1\|3262614_3263643_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703
NZ_AP022314.1\|WP_085195061.1\|3271950_3272685_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085195053.1\|3279534_3281802_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_AP022314.1\|WP_085195055.1\|3275443_3275959_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|214628
NZ_AP022314.1\|WP_003919392.1\|3278210_3279557_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_AP022314.1\|WP_112650154.1\|3271710_3271917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_003919391.1\|3277189_3278206_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|367316
NZ_AP022314.1\|WP_085196992.1\|3268488_3268944_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_AP022314.1\|WP_039889534.1\|3264460_3265282_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP022314.1\|WP_139821150.1\|3274439_3274748_-\|RNA-2'-phosphotransferase	unknown	unknown	unknown
NZ_AP022314.1\|WP_085196996.1\|3263635_3264412_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975
NZ_AP022314.1\|WP_085196994.1\|3265295_3268481_-\|carbamoyl-phosphate-synthetase	unknown	unknown	gnl\|CDD\|237263
NZ_AP022314.1\|WP_003919390.1\|3276062_3277178_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_AP022314.1\|WP_085196988.1\|3269401_3270139_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_AP022314.1\|WP_085196990.1\|3268940_3269405_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_112650153.1\|3270322_3271693_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_AP022314.1\|WP_085197002.1\|3260305_3261415_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871

Protein	Function_ID	Function_description	E-value
NZ_AP022314.1\|WP_085197000.1\|3261411_3262602_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	8.43747e-132
NZ_AP022314.1\|WP_085195059.1\|3272684_3273248_-\|hypothetical-protein	gnl\|CDD\|378485	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN. This family is conserved in Mycobacteriaceae and is likely to be a lipoprotein.	0.000174975
NZ_AP022314.1\|WP_039889533.1\|3259322_3260303_-\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0
NZ_AP022314.1\|WP_085196998.1\|3262614_3263643_-\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	4.50848e-84
NZ_AP022314.1\|WP_003919390.1\|3276062_3277178_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_AP022314.1\|WP_003919392.1\|3278210_3279557_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.50755e-128
NZ_AP022314.1\|WP_085195055.1\|3275443_3275959_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	2.55223e-42
NZ_AP022314.1\|WP_003919391.1\|3277189_3278206_-\|nitronate-monooxygenase	gnl\|CDD\|367316	pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite.	1.52752e-102
NZ_AP022314.1\|WP_085196992.1\|3268488_3268944_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	2.47979e-10
NZ_AP022314.1\|WP_039889534.1\|3264460_3265282_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.87092e-47
NZ_AP022314.1\|WP_085195053.1\|3279534_3281802_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_AP022314.1\|WP_085196996.1\|3263635_3264412_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	1.17892e-124
NZ_AP022314.1\|WP_085196994.1\|3265295_3268481_-\|carbamoyl-phosphate-synthetase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	1.77121e-164
NZ_AP022314.1\|WP_085196988.1\|3269401_3270139_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.41205e-103
NZ_AP022314.1\|WP_112650153.1\|3270322_3271693_+\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	8.24137e-82
NZ_AP022314.1\|WP_085197002.1\|3260305_3261415_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	8.36782e-43

>NZ_AP022314.1|WP_085196988.1|3269401_3270139_-|4-hydroxy-tetrahydrodipicolinate-reductase
MRVGVLGAKGKVGSTMVQAVQAADDLTLSAEVDAGDPLTLFTDSHTEVVIDFTHPDVVMDNLAFLIDNGIHAVVGTTGFTEERLQQVRSWLAAKPGTAALIAPNFAIGAVLCMHFAKQAAPFYDSVEVIELHHPHKADAPSGTATRTAQLIAEARKDLPPNPDATSTSLPGARGAEVDGIPVHSVRLAGLVAHQEVLLGMAGETLTIRHDSLDRTSFVPGVLLAVRHIKERPGLTVGIEPLLNLQ
>NZ_AP022314.1|WP_085196990.1|3268940_3269405_-|hypothetical-protein
MTKSPGALRIPLLIAFMCAALLVYLALLVRIAVVMIGSGRAAAIGLGLALLVLPAIGLWAMISTLRAGFAHQKLARLIADEGMELDVSALPRRPSGRIDRRAADVLFDTVRAELQENPNDWRRWYRLARAYDYAGDRRRAREAMKKAAQLQGGR
>NZ_AP022314.1|WP_085196992.1|3268488_3268944_-|flavodoxin-family-protein
MSKTLLVVHHTPSPATRELLEAVLAGANDPEIEGVDVVVRPALAATVPDMLDADGYLFGTTANLGYMSGALKHFFDTVYYPSLDHVAGRPYGLWVHGNNDTVGAATAVGKVATGLSLIKAADVLEVVGGIDAAARERAYELGGTLAATLME
>NZ_AP022314.1|WP_085196994.1|3265295_3268481_-|carbamoyl-phosphate-synthetase
MTLLIANRGEIALRIIRTATELGIDTAAVYAEDDADSPHVHAADEAIGLPGTGPAAYLDHAAILAAAKKAGASMIHPGYGFLSEDPGFARACTAAGYRFVGPAADLLELFGDKSAARRAAIAAGISVLDATDGPSSVEDIHAFFAAHNGAIMIKAIGGGGGRGVRVVRSAEQLDDAYRQCAAEAQLGFGNPAVFAEALFEDARHIEVQIVAAGAHALALGDRDCSVQRRYQKLVEIAPSQAVTDEMRCDLHENAARLCAHVNYRGLATVEFLVAGERFVFLEVNPQIQVEHTVTEEATGVDLVAAQLAIADGTALDDLGLPAGITAHGTDVTGEPAPARGIAIQTRVNMETIDADGSVVPTAGTLTGFTPPSGPGVRVDTYGRPGLTLSPRYDSLLAKVITHVHGTSFPAALRKARTALADFSIEGIGTNIPLLREILSASEVQSGLVTTGFLDAKLPELAAAALTRQPEIRVTALELYPGEEALCAPMAGTVVEVAPEGAEFAAGRPVAVLEAMKMQHVLAAPDALRTVRNLVKPGQVVGTGDPLVVFTRTGADTMGDAAAQLDLDRPRADLDEVRHRHLLTLDEGRPEAVAKRHRQNRRTARENIADLVDPGSFVEYGALAIAAQRSRRSEEDLITNTPADGLVAGVATIGGAEVAVLSYDYTVLAGTQGMRNHAKTDRVFELAARKRIPVVLFAEGGGGRPGDTDLGNIAGLDVPTFRALGALSGQVPLVSIVSGRCFAGNAALAGICDVIIATPDANIGMGGPAMIEGGGLGVYRPEDIGPIDMQRRNGVVGLAARDEAHAVSLAKQYLSYFQGSTEDWEAPDPRLARHVVPENRLRAHDVHRAIESVVDVGSTLELRPDYGVGVVTALVRVAGMAYGLVANNSHHLGGAIDAEAADKIADFLTLCEAFGLPVISLCDTPGFMVGPEVETQAAVRRFSRLFVVGARLTVPLGMIILRKGYGLGAMAMGGGSFRAPDFTVAWPTGEIGGMGLEGAVRLGFKKELAAVADPAERQHLFEKLVDAAYQHGKALTSATTFELDDVIDPADSRAWITRLARR
>NZ_AP022314.1|WP_039889534.1|3264460_3265282_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKVARKTAIVTGGGGGIGGALAARLARDGARVVVADLDAQAATAVAEDINADQRDTAVSVGADASDTAEIQRLIRLAESEFGPVDLYFANAGITGAAGLDVSESDWDRSLDVNLRAHIRAARLLVPGWVERGEGYFVSTASAAGLLTQLGSATYSVTKHAAVGFAEWLNITYGDKGVRVSCLCPMGVNTKLLYSGEQSGDPLGDLATRAVTTAGEVLEPSKVADSVLAAIEEERFLILPHPEVLDMYRQKAADYDRWLRGMRRYQRTLLGDNR
>NZ_AP022314.1|WP_085196996.1|3263635_3264412_-|SDR-family-oxidoreductase
MITEDLTGRTAIITGASRGIGLAVAQRLAQHGANVVLTSRKQDSADAAAAQVGGNALGVAAHAVEEAAAQRCIDLALERFGSVDILVNNAGTNPAFGPLIEQDHARFAKIFDVNLWAPLLWTSLVVKAWMGEHGGAIVNTSSIGGMHFAPYMGMYNATKAALIHVTKQLALELSPRVRVNAICPGVVRTRLAEALWKSNEEALASTTPLGRIGEPVDVAGAVAFLVSDAASWITGETMVIDGGQLLGNAQAFRNGSSD
>NZ_AP022314.1|WP_085196998.1|3262614_3263643_-|phosphotransferase-family-protein
MTSVVLGVDPAVVADWIERLGIAFTGPLSFERIGLGQSNLTYLVRDADDREWVLRRPPLGQLLASAHDVAREARILSALQDTAVPTPTIYGLTRDPNDVPLLLMEYVDGLVIDRMEKAESLTPQRRRQIGLSMAKTLATIHAVDITEFGLADLASHKPYAQRQLKRWARQWELSKTRDLPDLDDLTRRLAAAAPAQQELTLVHGDFHLRNVITSHTNGEVVAVLDWELSTLGEPLADMGSLLAYWPEPGEDEWAGSFAAAALDGFPDRAEMTAVYLAETGRDAAALKYWHALGLWKVAIVAEGVMRRAMDEPQNKAAAGTPTVQRIDALVRKAREVAADAGI
>NZ_AP022314.1|WP_085197000.1|3261411_3262602_-|acyl-CoA-dehydrogenase-family-protein
MSTDIAADLDTRVRTLLEQHNPATTDPREFLGARFDAGLAWVHFPRGCGGLELPRTFQQRVEAQLAAAGAPPPGLGRNVIGMGMAAPTIAAFGTDEQKRKFLRPLYTGEHIYCQLFSEPGAGSDLAGLATRAVRDDGDWIVNGQKVWTSMAQHAQMAILLARTDPTVPKHQGLTYFLCDMTVPGIEIRPLRQITGEAEFNEVFLTDVRVPDANRLGPEGGGWKVATTTLNNERLAIGNRPGVPREGGMIGKVTHAWRSEPALRNPAMHDQMMRLWVDSEVIRLTGERLRQRLAAGQPGPEGAGMKIAFARLAQAISGFELELHTESGLQYDDWTMRRPETVDLIGREPGYRYLRARGNSIEGGTSEILRNTIAERVLGLPPEHRVDKHVAWKDLER
>NZ_AP022314.1|WP_085197002.1|3260305_3261415_-|acyl-CoA/acyl-ACP-dehydrogenase
MNADLLYSDTEEALRDSVRHLLADRCPPEAVMRLYDPGPPNFSGVWKQLAADLGVAGLLVPEELGGAGAGAREAAVVMEEIGRAVAPVPYLSSAVLATVALLQAGDTETLPRLAAGEITAALAVPLSNAPGDPVTGVSTGADGLAGEVTSVAGAAEADVLVVPATGPDGLELHTVSRTAAGVAVTPVLALDMTRPLASVRFSGATSSRVATGSAEAALAAALHTGAALLASEQLGVAQWCFDTTLDYVKGRKQFGRAIGSYQAIKHRMADLWLEVSSAAAAARYAADTCARRDPDATIAAALAQAYCSDVAVHAAEECIQLHGGIGMTWEYPAHLYLKRAKSDQLALGTGYRHRATLAELVDLPRDSGS
>NZ_AP022314.1|WP_039889533.1|3259322_3260303_-|aldo/keto-reductase
MDTRTLGNGLEVSAIGLGCMGMSRGYGPPGSRSDMIAVIRSAVERGVTFFDTAEAYGDNEELVGEALAPFTGQVVIATKFGFAFDATGNIAGLNSRPENIRRVTDASLRRLGVESIDLLYQHRVDPQVPVEDVAGTVKELIQDGKVKHFGMSEASAEAIRRAHAVQPVTAVQSEYSIWWRAPESEVLPTCAELGIGFVPYSPLGKGFLTGSIGADTQFDRTDIRNAIPRFAADARAANQAVVDLLDTIAARKNATPGQIALAWLLAQQPWIVPIPGTRRLERLQENVAAADVELTADDLREIDDAATRITVQGARYPDFMQRLIGD
>NZ_AP022314.1|WP_112650153.1|3270322_3271693_+|HNH-endonuclease
MSSTRVAAPPELRAALEALDAAVAQVRELDLDAYEPAVRLRALERLETSRRHQAVASHDLIASLAKEEFAAIGGAPHKVIADWLRISCAEARRRIHNAEQLAPRLTLTGEKLPPQLPATAQAWRQGVLDEQHLRVIQRFVRDLPEITPTATVEHAERLLAGQAAELRPDQLEKVANRCAVLINPDGKFSDTDRARQRGFTWSGQRRDGMSIGKLVASPELRANLDAWFARFAAPGMCNPDDPTPCLSGQPDHEAASKDVRSHAQRQHDALNALVRGQLGDPKLGVHNGLPVTVIVSTTLKELIAGTGHAVTGGGTLLPMRDLIRMAGHAYHYLAVFDDHDSRPLYLGRTKRIASPDQRVVLYAKDRGCTAPGCDVPGYWCEVHHTEDWARGGHTNIDKLTLACQPDHNLAEQGWRTIKLGNGQTQWIPPPHLDHGQPRTNNYHHPERFFEDENDTG
>NZ_AP022314.1|WP_112650154.1|3271710_3271917_-|hypothetical-protein
MSSVSIGALLELALVCAIPYLATGAIVAGAHGEGLRQVRVEQGHDVLVTFLASLISWPMLLFAHSCAT
>NZ_AP022314.1|WP_085195061.1|3271950_3272685_-|hypothetical-protein
MAGGAAKYRWTRVVRYSFGGALCLLAVVNVLIGSAWYLSLGIAVTGGIILFGQRRIFRAAVSRSGDEIICRYIPWYEGNAYSTLVLIPLMGVAMVAAGSAPGYPAWLAYGGAFLLLGVTPLTLYGIVRMWLRCLLHITPSALVVRFAERGSELTEIRRELIESIEPRPTPQPVSGTWLEVAITYRPVEAGSVGTKTVIIGLRLTVQPINLLNALVVWKDSANENPSELLDRVELVLRGRSMAGV
>NZ_AP022314.1|WP_085195059.1|3272684_3273248_-|hypothetical-protein
MRFDEFTEKHGLVVSPVNRFAGFLVEVGAPKGWEPFDSAPGVRVWACRDDPCIDVFCANAVLTMHRVKAPLDPAEVFTMLSEQQLQSAPGCHEVRRELGPAGESGGIQGLLAMQITHELGAIDSASESRIITAGQETLIAQLTVTALHDSPVDRAHIRLTVRPGAAAGPAPAGYRGVVPVITTREGD
>NZ_AP022314.1|WP_139821150.1|3274439_3274748_-|RNA-2'-phosphotransferase
MAGEFVQVDPAAVAAGSTHLEASVGDAAINFMVHEDQLADAAPGWIGESAKALSEVMTRWETRHAEHKRSVGGLSYHMAMAGTAFTANEGHSAQELSALDPR
>NZ_AP022314.1|WP_085195055.1|3275443_3275959_-|Lrp/AsnC-family-transcriptional-regulator
MSVDSTETARADAPGAKDLRPAGLDDVDRRILSLLHADARITNSALAEKVGVAPSTCHGRVRRLVELGVIRGFYTDLDPVAIGLPLQAMIAVNLQSSARGKIRNFIQQIRRKPQVMDVYFLAGPDDFILHVAARDTEDLRSFVVENLNADADVAGTQTSLIFEHLRGAAPI
>NZ_AP022314.1|WP_003919390.1|3276062_3277178_+|alanine-dehydrogenase
MRVGIPAETKNNEFRVAITPAGVAELTRRGHEVLVQTGAGEGSAIADTDFKATGAQLVNTAEEVWASAELVLKVKEPTPSEYARLRRGQVLFTFLHLAASRSCTEALLTSGITSIAYETVQTAAGELPLLAPMSEIAGRLSAQVGAYHLMRTHGGRGLLMGGVPGVEPADVVVIGGGTAGYNAARLANGMGAHVTVLDININKLRKLDAAFGGQVRTRYSSAYDLEDVVKHADLVIGAVLVPGAKAPKVLSNSLVAQMKPGAVLVDIAIDQGGCFEDSRPTTHDRPTFAVHDAVFYCVTNMPASVPKTSTFALTNATMPYVIKLADHGWRAACRSDPALAKGLSTHDGALLCEQVADDLDMPFTDPASVLA
>NZ_AP022314.1|WP_003919391.1|3277189_3278206_-|nitronate-monooxygenase
MVLGFWDLEVPVVGAPMAGGPGTPALAAAVTNAGGLGFVAGGYLTPERLADDIAAARAATTGPIGVNLFVPQPSVADYVQLDRYAEELDEIAEHYDVEVGQPRFGDDDGWQRKLEVIADVRPEVVSFTFGAPSPDVLRRLGAQGILLFITVTSAYEAGVALAAGADGLVVQGPDAGGHRGTFAPDMKPGTEPLGELLGKIRAAHDVPLIAAGGLGTAEDVAGVLRSGAVAAQVGTALLLADEAGTCSAHRTALQNPQFGRTLVTRAFSGRYARGLENDFTRMLDDVAPLGYPEVNHMTSPIRKAAAAADDPHGINLWAGTAFATARPGPAAEIVASLV
>NZ_AP022314.1|WP_003919392.1|3278210_3279557_-|insulinase-family-protein
MPRRPAVNRGALRRGPHSAEPSAAIRRTTLPGGLRVVTEYLPAVRSASVGVWVGVGSRDEGATVAGAAHFLEHLLFKSTPSRTAVDIAQAMDAVGGELNAFTAKEHTCYYAHVLDSDLELAVDLVSDVVLNGRCAAEDVELERDVVLEEIAMRDDDPEDTLADLFLGALFGDHPVGRPVIGTVQSVSAMTRSQLHSFHTRRYTPERMIVAVAGNVDHDEVVGLVREHFGPRLVRGRRPAAPRKGAGRINGRPRMAVLNRDAEQTHVSLGVRTPGRHWRHRWALSVLHTALGGGLSSRLFQEVRETRGLAYSVYSSLDIFADSGALSIYAACLPERFNDVAQVTCDVLESVARDGITEAECRIAKGSLRGGLVLGLEDSSSRMNRIGRSELNYGEHRSIERTLQELDAVTVDEVNSVARRLLRRPYGVAVLGPYRSKRAVPQQLRAIVQ
>NZ_AP022314.1|WP_085195053.1|3279534_3281802_-|polyribonucleotide-nucleotidyltransferase
MSVTEIEQGVFESTAVIDNGRFGTRTIRFETGRLAQQAAGSVVAYLDEENMLLSATTVGKTPKEQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPSFVNGLRNEIQIVVTILSLDPNELYDVLAINAASASTQLGGLPFSGPIGGVRVALIDGTWVAFPTVEQTERATFDMVVAGRLTDTTETGKPDVAIMMVEAEATENAVELIAGGAQAPTETVVAEGLEAAKPFIATLCAAQQELADAAAKPTGEFPLFPDYGDDVYYSVASVATDELAAALTIPGKTERNNRTDEIKAEVLARLADTYPGREKEVSAAFRALTKKLVRQRILTDHFRIDGRGVTDIRALSAEVSVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETTKRYMHHYNFPPFSTGETGRIGSPKRREIGHGALAERALIPVLPSVEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDVELPDGRTERRFVTLTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSEVLASALAQARDARLTILEVMAEAIDRPDEMSPYAPRVTTIHVPVDKIGEVIGPKGKIINAITEETGAQISIEDDGTVYVGATDGPSAEAAIERINAIANPQLPKVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGKRIARVEDVLNVGDKLRVEIADIDRRGKISLVPLGDDESASSGAAPADAATASS

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Crispr_ID: NZ_AP022314_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022314_3

4466613-4466695

Orphan

Consensus_repeat	Method
CGCGCTCTGCATCGTCGCCGACCGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_AP022314_3

>merge|NZ_AP022314|3|4466613-4466695|CRISPRCasFinder
CGCGCTCTGCATCGTCGCCGACCGTGGCCCGATTGGCCCGCTCCTCCTCATCGCGCTCCGCGCTCTGCATCGTCGCCGACCGT

>NZ_AP022314|3|3|4466613-4466695|CRISPRCasFinder
CGCGCTCTGCATCGTCGCCGACCGT	GGCCCGATTGGCCCGCTCCTCCTCATCGCGCTC
CGCGCTCTGCATCGTCGCCGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022314.1\|WP_003922472.1\|4462386_4463295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022314.1\|WP_085193175.1\|4469355_4469904_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_AP022314.1\|WP_085193177.1\|4469890_4470667_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_AP022314.1\|WP_003922471.1\|4463368_4464403_-\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
NZ_AP022314.1\|WP_085193171.1\|4456513_4457149_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_AP022314.1\|WP_003922473.1\|4461810_4462227_-\|DUF3151-domain-containing-protein	unknown	unknown	gnl\|CDD\|378646
NZ_AP022314.1\|WP_085193179.1\|4474385_4474832_-\|SRPBCC-domain-containing-protein	unknown	unknown	gnl\|CDD\|176856
NZ_AP022314.1\|WP_003922463.1\|4470710_4471532_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_AP022314.1\|WP_003922475.1\|4459968_4460856_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_AP022314.1\|WP_085193259.1\|4457145_4458444_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_AP022314.1\|WP_003922469.1\|4465201_4466551_-\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NZ_AP022314.1\|WP_085193183.1\|4475976_4477143_+\|2-polyprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|99784
NZ_AP022314.1\|WP_003922462.1\|4471679_4474226_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_AP022314.1\|WP_161552190.1\|4467803_4468355_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349969
NZ_AP022314.1\|WP_085193169.1\|4455696_4456512_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NZ_AP022314.1\|WP_003922476.1\|4459147_4459927_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
NZ_AP022314.1\|WP_003922470.1\|4464522_4465200_+\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NZ_AP022314.1\|WP_085193185.1\|4477175_4478063_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185695
NZ_AP022314.1\|WP_085193181.1\|4474828_4475167_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_AP022314.1\|WP_169714174.1\|4468444_4469323_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022314.1\|WP_085193185.1\|4477175_4478063_+\|aldose-1-epimerase	gnl\|CDD\|185695	cd01081, Aldose_epim, aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.	5.87806e-47
NZ_AP022314.1\|WP_085193175.1\|4469355_4469904_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	9.35391e-66
NZ_AP022314.1\|WP_085193177.1\|4469890_4470667_-\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.04884e-82
NZ_AP022314.1\|WP_003922475.1\|4459968_4460856_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.26291e-78
NZ_AP022314.1\|WP_085193171.1\|4456513_4457149_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.45412e-14
NZ_AP022314.1\|WP_003922473.1\|4461810_4462227_-\|DUF3151-domain-containing-protein	gnl\|CDD\|378646	pfam11349, DUF3151, Protein of unknown function (DUF3151). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.38403e-67
NZ_AP022314.1\|WP_085193179.1\|4474385_4474832_-\|SRPBCC-domain-containing-protein	gnl\|CDD\|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	6.38596e-36
NZ_AP022314.1\|WP_003922463.1\|4470710_4471532_-\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.0086351
NZ_AP022314.1\|WP_003922471.1\|4463368_4464403_-\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_AP022314.1\|WP_085193259.1\|4457145_4458444_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_AP022314.1\|WP_003922469.1\|4465201_4466551_-\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	2.05332e-125
NZ_AP022314.1\|WP_085193183.1\|4475976_4477143_+\|2-polyprenylphenol-hydroxylase	gnl\|CDD\|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	2.07614e-97
NZ_AP022314.1\|WP_003922462.1\|4471679_4474226_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_AP022314.1\|WP_161552190.1\|4467803_4468355_-\|RNA-methyltransferase	gnl\|CDD\|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	7.11603e-61
NZ_AP022314.1\|WP_085193169.1\|4455696_4456512_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	5.69589e-27
NZ_AP022314.1\|WP_003922476.1\|4459147_4459927_+\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	1.73589e-40
NZ_AP022314.1\|WP_003922470.1\|4464522_4465200_+\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	5.21836e-50
NZ_AP022314.1\|WP_085193181.1\|4474828_4475167_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.05844e-19

>NZ_AP022314.1|WP_003922469.1|4465201_4466551_-|3-oxoacid-CoA-transferase-subunit-B
MNKVHPDAVSALQGLLKDGITVAAGGFGLCGIPENLIRALVDSGVKDLTIVGNNAGVDDFGMGLLLKGRQVKKVIASYVGENKEFERQVLAGELDLTLTPQGTLAEKLRAGGAGIPGFYTRTGYGTVLAEGKDTRVFDGTEYVLEESIRADLAIVKAWKGDKAGNLVYRKTARNFNPMIATCAEVTVAEVEELVEVGELDPDLVHTPGIYVDRIIEGRDYEKRIEFRTTSGGAALKNHSPIRELMARRAARELRDGYYVNLGIGIPTLVANFIPENINVTLQSENGLLGIGSYPTEDEVDPDLINAGKQTITAIPGSSFFSSADSFAMIRGGHIDLSILGGLEVAENGDLANWMVPGKMVKGPGGAMDLVSGVKRVIVVMDHTAKDGSPKILKQCTLPVTGKGVVDMIITDLCVFDVKPGQGLTLTELHPGVTVEEVRAKTGCDFRVAI
>NZ_AP022314.1|WP_003922470.1|4464522_4465200_+|VTT-domain-containing-protein
MDTAVLALPNLLDPMYWLGAHGVFGHAVLPGILLIVFIETGLMFPLLPGESLLFTGGLLAASAHPPVSIEVLATCVAIVAVLGDQTGYFIGRRIGPALFKKEDSRFFKQHYVTESHAFFEKYGPVTVILARFAPFVRTFVPVVAGVSYMRYPLFLGFDIVGGIAWGAGATLTGYFLGNVPFVNKNLETIILGILFVSLMPAFISAGRAYLNRRRASKDEPVPLPE
>NZ_AP022314.1|WP_003922471.1|4463368_4464403_-|class-II-fructose-bisphosphate-aldolase
MPIATPEVYAEMLERAKQNSYAFPAINCTSSETINAALKGFADAGSDGIIQFSTGGAEFGSGLGVKNMVTGAVALAEFAHIVAAKYPINVALHTDHCPKDKLDGYVRPLLAISQERISQGKNPLFQSHMWDGSAVPIDENLAIAQELLKEASSAKIILEVEIGVVGGEEDGVVGEMNEKLYSTPADFEKTVDALGTGEHGKYLLAATFGNVHGVYKPGNVKLRPEILAEGQKVAAAKLGLPAGSKPFDFVFHGGSGSLKSEIDEAVRNGVVKMNVDTDTQYAFTRPVAGHMFTNYDGVLKVDGDVGRKKDYDPRSYLKKAEASMTERVIEACNDLHCAGKSLSG
>NZ_AP022314.1|WP_003922472.1|4462386_4463295_+|hypothetical-protein
MPTPSEPDRDDTPTAAGLEPDAVNNEDGSDRVASEAGPADEQTAKPEPDDEVTQSYPTAGGDAEPATEVMAKPEREDEHPAAKPQRKRGERRFTAPGFDAKETVVIETAAEPATEVFRTRQETPQPKPISPMNTPPKTATPQVIPPRLGAKLRPTVQRSWGWVLALILIILALAAVAVLGTVLLTRGKHHKVSQEDQVRTTIQNFDVAVQTGNLATLRGITCGSARDGYVNYDEQAWQETYRKIAAAKQYPVVASIDQVVVNGEHAEANVTAFMAYDPQVRSTRSFDLQFRDNQWKICQSSG
>NZ_AP022314.1|WP_003922473.1|4461810_4462227_-|DUF3151-domain-containing-protein
MAPTRDLLGPDPILLPGDRDAEAELRANQKPAIVAAAHPAASVAWAALAEEALAEDKAITAYAFARTGYHRGLDQLRRNGWKGYGPVPYSHEPNRGFLRCVAALARAADAIGETDEYQRCLELLDDCDPHARAELGLS
>NZ_AP022314.1|WP_003922475.1|4459968_4460856_+|cation-transporter
MGAGHTHNHADARISRMLAAAVLLASFFVVEVSTALLIGSIALLADAGHLLTDLAAAFMGLAALMLVRRGSSSPRRTYGWHRAEVFTAVVNAVLLIGIAAFILYEAVRRLGDAPAIPGVPLTAVALGGLATNTAVALLLRSQSTRSLAVKGAYTEVVADTVGSLGVLVAGVVTLTTGWPYADVVVAVFVALWVLPRALSLAASALRILSESSPRHIDVDELRAALHAVDGVTEVHDLHVWTLVPGKDMVTAHLTSCADATRVLADARAVLAARGLEHATVQVESPDGLDHCSPSW
>NZ_AP022314.1|WP_003922476.1|4459147_4459927_+|site-2-protease-family-protein
MSVRGLHESVRPSPIFLAIVALTACGGVLAWLAGADTRALAYVGVFVFVIAGWLVSLCLHEFGHAVTAWRFGDRDVAVRGYLTLDPRRFTHPMLSLGLPMLFIALGGIGLPGAAVYVRTSFMTPARRTLVSLAGPFANLVLAVLLLALVRLYYEPAHPVLWAGVAFLGFLQVTAVVLNLLPIPGLDGYGALEPHLSPETQRALEPAKQFGFLFVLLLFLAPALNQWFFGVVDWFFELSGVPAMLARLGSALTRFWGAWF
>NZ_AP022314.1|WP_085193259.1|4457145_4458444_-|adenylosuccinate-synthase
MPAVVLIGAQWGDEGKGKATDLLGGRVQWVVRYQGGNNAGHTVVLPTGENFALHLIPSGVLTPGVTNVIGNGVVVDPGVLLDELAGLEARGVDTSRLLISADAHLLMPYHVAIDKVTERYMGNKKIGTTGRGIGPCYQDKIARIGIRVADVFDPDSLTRKIEAALEFKNQVLVKIYNRKALEPAQVVDTLLAQAERFKHRVADTRLLLNAALERGETVLLEGSQGTLLDVDHGTYPYVTSSNPTAGGAAVGSGIGPTRITTVLGILKAYTTRVGSGPFPTELFDEYGEYLSKTGGEFGVTTGRRRRCGWFDAVVARYATRVNGITDYFLTKLDVLSSLQTVPVCVGYRIDGKQTPDMPMTQSELARAEPVYEELPGWWEDISAARKFDDLPAKARDYVLRLEELAGAQVSCIGVGPGREQTIVRRDVLQVNP
>NZ_AP022314.1|WP_085193171.1|4456513_4457149_-|PaaI-family-thioesterase
MTDQPEALDPEYEHHGGFPRYEPAQPGPGFAKFVAAMRRLQDLAVSANPDSDTWDEAAERAEELVKLLDPFQAAEGVAPAGRVPSLPGMGSLLMPPWTMTKFDADGVEMRGQFSRYYVGGNMAVHGGVISLVFDWLCGMVVHAAGRPISRTAYLKVDYRKVTPIDRPLVARGRITETEGRKAFIAGELVDQDDTVLAEVHALMVRLLPGQP
>NZ_AP022314.1|WP_085193169.1|4455696_4456512_+|class-I-SAM-dependent-methyltransferase
MTQSSTGYLLGHADAEVRRLLLQARLYDDHTAAALRLAGLRPGMRVLDVGCGPGDVSFVAARLVGSTGTVLGVDAADIVELATSRAAEQGLSNVRFQRSSIAEIALDEPVDAVIGRLILMHLPDPVGALRQLATLVRPGGLIAFSEIDTTAATSAPDLPLLRAVRDGIAGAFTGMGLDPAFGATLHTLFRHAGLGEPRLTLGAPVGTIADPEPLSYVVETWRSLLPVARQLGLATDGLSDVDKLVPRLREEAASADAILVLPALISAWICR
>NZ_AP022314.1|WP_161552190.1|4467803_4468355_-|RNA-methyltransferase
MLLREGDARNVVDAYRYWTREAIIADIDKRRHPLHIAIENFGHDANIGAVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQRLRHHDTTAELLDFAAAAGLTVVAVDNVPGAARLEQTGLPRHCLMVFGQEGPGITDEAKAGAALTVSIAQFGSTRSINVAVAAGIAMHAWIAQHADIDRAW
>NZ_AP022314.1|WP_169714174.1|4468444_4469323_-|hypothetical-protein
MVATLAAVCSAACSSAGRHDKIYGAQSVQLGQSVAVLGWNMSVSNLRWNADYVLVDVDAAPSDLAAPHAKPEDIRFGLYGALAHPMESTGIGSCEGAKNIVVQSLSAPTPDRLSGTVCLGPLKDRSAVRGVYTYSPRDRIPGTTAAYPAAFPVGMLPTNQNDTGLVVKTTSVSAWRADGTQLSQASLGDPGVFAGDGYMLLGLSVDAVAARYRDDSAARGGPMMLLVAPTLPGPGLSPACAAYGASVLILPEASLDAVHVSPSLCTQGEINEAVLYATVSVVGTHAAVWTVK
>NZ_AP022314.1|WP_085193175.1|4469355_4469904_-|orotate-phosphoribosyltransferase
MAAPDLANREELAELVRRLSVRRGRFTLSSGKQADYYVDLRRATLHHRAAALIGRLMRELTADWDYAAVGGLTLGADPVATAIMHAPGRPIDAFVVRKSVKPHGMQRLIEGADVSGLRVLVVEDTSTTGASALTAVRAVRDAGGDVVGVATVVDRGTGAAEAIQAEGLPYRSLLGLADLGLH
>NZ_AP022314.1|WP_085193177.1|4469890_4470667_-|SDR-family-oxidoreductase
MPRPVALITGPTSGIGAGYARRYAADGFDLVLVARDTERLAQLAGELRDEAGCGVEVLPADLADAADRGKVADRLTAGVRVLVNNAGFGTSGEFWTTDPALLQAQLDVNVTAVMQLTRAALPPMLDAGVGTVINVASVAGLLSGRGSTYSASKAWVVSFTEGLAGGLKGTGVGVHAVCPGYVRTEFHSRAGIDMASLPSFMWLSVDDVIRESMADIARGKVISIPGVHYKALVAGIRMMPRTVARAAVNAMGRGRGRT
>NZ_AP022314.1|WP_003922463.1|4470710_4471532_-|hypothetical-protein
MVPLWFTLSALCFVGAAVLLYVDIDRRRGRGRRRRSWARSHGFDYEPENSELPKRWKRGVMSTVGDVPAYNVVLGQIRGEAVYIFDLEEVATVIALHRKVGTSVVVDLRLKGLKEPRESDIWLLGAIGPRMVYSTNLDAARRACDRRMVTFAHTAPDCAEIMWNEQNWTLVSMPISSGRAEWDEGLRTVRQFNDLLRVLPPVPQQMSQPAPRRNAAPSRPLAAAARGDLAPRRAPDGVRRAPAEPARPDKGRSAPTQRPPTGRKGQQAPHYQR
>NZ_AP022314.1|WP_003922462.1|4471679_4474226_-|ATP-dependent-chaperone-ClpB
MDSFNPTTKTQAALTSALQAASAAGHPEIRPAHLLMALLTQNDGIAAPLLEAVGVEPATIRAEAQRLIDRLPQVTGASSQPQLSRESLAAITAAQQLATEMDDEYVSTEHLMVGLATGDSDVAKLLNGHGASPQALREAFVKVRGSARVTSPDPEATYQALEKYSTNLTAAAREGKLDPVIGRDTEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLRDKTIIALDLGSMVAGSKYRGEFEERLKAVLEDIKNSAGQIITFIDELHTIVGAGATGEGSMDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQPVYVGEPSVEDTIGILRGLKDRYEVHHGVRITDSALVAAATLSDRYITARFLPDKAIDLVDEAASRLRMEIDSRPVEIDEVERLVRRLEIEEMALAKEEDEASRERLEKLRAELADQKEKLAELTTRWQNEKNAIDTVRELKEQLERLRGESERAERDGDLAKAAELRYGRIPEVEKKLEAALPQAQAREAMMLKEEVGPDDIAEVVSAWTGIPAGRLLEGETAKLLRMEDELSKRVVGQRRAVQAVSDAVRRSRAGISDPNRPTGAFMFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYGERHSVARLIGAPPGYVGYESGGQLTEAVRRRPYTVVLFDEIEKAHQDVFDVLLQVLDEGRLTDGQGRTVDFRNTILILTSNLGSGGSEEQVMAAVRATFKPEFINRLDAVLIFDGLNPEELVQIVDIQLEQLGKRLAQRRLQLEVSLQAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLSGQVHDGDTVPVNVSPDGDSLILG
>NZ_AP022314.1|WP_085193179.1|4474385_4474832_-|SRPBCC-domain-containing-protein
MIRTADPTVIEVDQFYPHPPERVWQALTTPELMARWLMAPSGFAPVVGTRYTFQGQPMPSVGFSGEVACEVLAVVPGQRLAMSWADARSDKPSAWVVTWTLHPEGTGTRVILRHTGFDPDDDRQQRARTIMGQGWVRIVAQLGRLLDD
>NZ_AP022314.1|WP_085193181.1|4474828_4475167_-|winged-helix-turn-helix-transcriptional-regulator
MPPRAKSSRTDVVFAALANPTRRDILDMLLGGERTVISIAERFDMARPSVSEHLKVLRDCGLVAEDKQGRFRRYRVNPEPLRQISAWLSPYERFWRERLAALADVLDEMEDS
>NZ_AP022314.1|WP_085193183.1|4475976_4477143_+|2-polyprenylphenol-hydroxylase
MGLDNRDALRVLHAAFREGPACDELIRRFYTRWFALDVSLRDKFPPDMGGQRAAFAHALHWVYGELVAQHATEPVEFLAQLGRDHRKYGVTEAHYETLRQALHATLRSELADEWSDTVEEAARQSLNLITGVMSGAADADVGPAWWDGTVIEHLRVSRDLAVVRLQLDRPLPYHPGQYVNVSIPQCPRRWRYLTPAIPPDDNGGIEFHVRAVPGGLVSTAIVGETRPGDRWRLSSPHGGLQVDRDGGDVLMVAGSTGLAPLRSIIMDLTRWGENPRVHVFFGGRYPCELYDLPTLWQIAAHNPWLSVSPVSEYTANPAWASEYPDVTPPRGLHVRQTGRLPEVVTKYGSWSDRQILICGGPEMVRATKAALIAKGAPPERIQHDPLCS
>NZ_AP022314.1|WP_085193185.1|4477175_4478063_+|aldose-1-epimerase
MHIVTLRDPSAPVVARYAPSAGMIGISLTDSGVELLGQRGGLDAYLAAGKTMGIPLLYPWANRLGERRYRVDGEEVTLEPDAFGVRTDPNGLPIHGLLAGYPGWRVMTQSANELTAELDFGADPALLASFPFPHLVVMRVSLADRSLTVRSTVSALGKPVPLCFGFHPYLQVPEAPRAQWVIETPRLRHLSLDERGLPTGDAVEQPPIHEALGDKVFDDGYDEVPEGAVFAVSGGGRRIEVHFEQGYPAAQIFAPAGEDVVCFEPMAAPTDALRRGGYRCAQPGQPAVAVFSIRV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022314_3	3.1\|4466638\|33\|NZ_AP022314\|CRISPRCasFinder	4466638-4466670	33	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	121438-121470	7	0.788

1. spacer 3.1|4466638|33|NZ_AP022314|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 7, identity: 0.788

ggcccgattggcccgctcctcctcatcgcgctc	CRISPR spacer
ggaggcattggcccgctccgcctcgtcgcgcgc	Protospacer
**    ************* ****.****** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80701 : 170594

Tupanvirus(46.67%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085197981.1\|80701_81463_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_085197984.1\|81489_82266_-	DUF2470 domain-containing protein	NA	NA	NA	NA
WP_085197990.1\|83296_83986_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003919894.1\|83988_84180_-	hypothetical protein	NA	NA	NA	NA
WP_003919895.1\|84240_84591_-	metallopeptidase family protein	NA	NA	NA	NA
WP_085197996.1\|86071_87325_+\|tRNA	serine--tRNA ligase	A0A2I2L4X3	Orpheovirus	2.9e-55	38.2
WP_003919898.1\|87321_87804_-	DUF2834 domain-containing protein	NA	NA	NA	NA
WP_003919899.1\|87873_88479_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_085197998.1\|88552_90118_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_085198034.1\|90124_90469_-	hypothetical protein	NA	NA	NA	NA
WP_085198000.1\|90465_92016_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_085198040.1\|94347_96519_-	acyltransferase	A0A166XZF2	Gordonia_phage	8.2e-74	34.1
WP_039891317.1\|96846_98115_+	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.9e-06	37.3
WP_085198003.1\|98140_99127_-	FkbM family methyltransferase	A0A291AUV0	Sinorhizobium_phage	3.4e-11	31.9
WP_085198043.1\|100681_101374_-	rhamnosyl O-methyltransferase	NA	NA	NA	NA
WP_085198005.1\|101714_102983_+	glycosyltransferase	NA	NA	NA	NA
WP_085198008.1\|103278_104832_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_085198011.1\|104841_105831_+	aldo/keto reductase	NA	NA	NA	NA
WP_085198014.1\|105894_108819_-	MMPL family transporter	NA	NA	NA	NA
WP_085198016.1\|108851_111734_-	RND family transporter	NA	NA	NA	NA
WP_081485280.1\|111730_112216_-	hypothetical protein	NA	NA	NA	NA
WP_161551999.1\|112688_113192_-\|transposase	transposase	NA	NA	NA	NA
WP_161552000.1\|113080_113365_-\|transposase	transposase	NA	NA	NA	NA
WP_161552001.1\|113449_113836_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_170288578.1\|114533_114737_+	MbtH family NRPS accessory protein	NA	NA	NA	NA
WP_170288579.1\|114760_117337_+	AMP-binding protein	A0A2K9L3I8	Tupanvirus	1.7e-38	28.7
WP_170288580.1\|121046_121631_+	hypothetical protein	NA	NA	NA	NA
WP_170288581.1\|122472_123720_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.7e-52	33.4
WP_170288582.1\|123716_124028_+	hypothetical protein	NA	NA	NA	NA
WP_170288583.1\|124029_124776_+	hypothetical protein	NA	NA	NA	NA
WP_161552002.1\|124896_125937_+	AMP-binding protein	NA	NA	NA	NA
WP_161552003.1\|125933_126200_+	hypothetical protein	NA	NA	NA	NA
WP_161552004.1\|126123_126879_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	1.4e-28	36.9
WP_161552005.1\|126860_127937_+	hypothetical protein	NA	NA	NA	NA
WP_161552007.1\|128265_128901_+	hypothetical protein	NA	NA	NA	NA
WP_161552008.1\|128822_129077_+	AMP-binding protein	NA	NA	NA	NA
WP_161552009.1\|129073_129274_+	AMP-binding protein	NA	NA	NA	NA
WP_161552010.1\|129261_130017_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	1.1e-28	36.5
WP_161552011.1\|130013_131051_+	hypothetical protein	NA	NA	NA	NA
WP_161552006.1\|131004_131559_+	hypothetical protein	NA	NA	NA	NA
WP_170288584.1\|131447_132038_+	hypothetical protein	NA	NA	NA	NA
WP_170288591.1\|132184_136600_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	6.9e-51	30.4
WP_161552012.1\|136554_137067_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	2.8e-12	28.9
WP_161552013.1\|137012_137831_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	6.3e-27	37.1
WP_039890827.1\|149789_150464_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_085195702.1\|150472_152398_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	4.7e-105	34.4
WP_085195700.1\|152640_153966_-	hypothetical protein	NA	NA	NA	NA
WP_085195697.1\|154279_155632_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA
WP_039890830.1\|155663_156467_-	GAP family protein	NA	NA	NA	NA
WP_003921994.1\|156741_158148_-	hypothetical protein	NA	NA	NA	NA
WP_085195695.1\|158394_159663_+	glycosyltransferase	NA	NA	NA	NA
WP_039890821.1\|159696_160500_-	GAP family protein	NA	NA	NA	NA
WP_003921988.1\|160911_162222_+	hypothetical protein	NA	NA	NA	NA
WP_003921987.1\|162241_163510_+	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	5.6e-06	41.9
WP_112650023.1\|163630_164476_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_003921985.1\|164516_165785_+	glycosyltransferase	NA	NA	NA	NA
WP_039890818.1\|166197_167478_+	glycosyltransferase	A0A1L3KK54	Shahe_endorna-like_virus	1.6e-05	34.9
WP_085194896.1\|168966_170202_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.0e-41	42.9
WP_112650022.1\|170249_170594_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1633771 : 1702757

Pseudomonas_phage(11.11%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085195184.1\|1633771_1635505_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_112650323.1\|1635630_1636404_-	hypothetical protein	NA	NA	NA	NA
WP_085195177.1\|1636466_1636808_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_085195175.1\|1637151_1637487_-	hypothetical protein	NA	NA	NA	NA
WP_085195168.1\|1638675_1638996_-	hypothetical protein	NA	NA	NA	NA
WP_085195164.1\|1641089_1642508_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_003922256.1\|1643832_1644915_+	threonine synthase	NA	NA	NA	NA
WP_085195160.1\|1644928_1645873_+	homoserine kinase	NA	NA	NA	NA
WP_085195158.1\|1646144_1647974_+	transcription termination factor Rho	NA	NA	NA	NA
WP_003922252.1\|1648034_1649654_+	AMP-binding protein	NA	NA	NA	NA
WP_003922251.1\|1649827_1650085_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_003922248.1\|1650163_1651237_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	8.9e-05	43.1
WP_003922247.1\|1651233_1652082_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003922246.1\|1652078_1652732_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	7.3e-18	33.8
WP_003922245.1\|1652735_1653944_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_085195156.1\|1654170_1654638_+	hypothetical protein	NA	NA	NA	NA
WP_085195154.1\|1654630_1655383_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003922242.1\|1655460_1655715_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_085195152.1\|1655724_1656246_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_085195150.1\|1656252_1657590_+	F0F1 ATP synthase subunit B/delta	NA	NA	NA	NA
WP_085195147.1\|1657630_1659280_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_003922238.1\|1659285_1660209_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_085195145.1\|1660281_1661808_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_003922236.1\|1661866_1662232_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_039890977.1\|1662243_1662687_+	DUF2550 domain-containing protein	NA	NA	NA	NA
WP_003922234.1\|1662711_1663302_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_085195143.1\|1663359_1664613_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_112650291.1\|1669949_1670408_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	6.5e-21	52.3
WP_112649960.1\|1670348_1671618_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.4e-52	44.6
WP_085193081.1\|1671671_1672667_+	Lsr2 family protein	NA	NA	NA	NA
WP_003920874.1\|1674479_1676084_-	HAMP domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	4.6e-13	29.3
WP_085194366.1\|1676133_1676805_+	endonuclease NucS	NA	NA	NA	NA
WP_161552159.1\|1676879_1677119_+	hypothetical protein	NA	NA	NA	NA
WP_003920876.1\|1677115_1677592_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_003920877.1\|1677673_1678855_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_085194368.1\|1679965_1682170_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_085194370.1\|1682177_1684277_-	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_085193969.1\|1684715_1686119_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_003920881.1\|1686796_1689382_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_085193738.1\|1689368_1690379_-	hypothetical protein	NA	NA	NA	NA
WP_112650285.1\|1690449_1692414_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	8.0e-60	29.6
WP_085193733.1\|1692444_1693752_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.0e-42	34.2
WP_003920885.1\|1693800_1694103_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_003920886.1\|1694127_1694700_+	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_086009183.1\|1695748_1696201_+	M67 family metallopeptidase	NA	NA	NA	NA
WP_003920890.1\|1696212_1696485_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_003920891.1\|1696487_1697459_+	cysteine synthase	A0A1X9I5F1	Streptococcus_phage	2.2e-50	38.7
WP_085193729.1\|1697496_1698156_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_003920895.1\|1698152_1698983_+	glutamate racemase	NA	NA	NA	NA
WP_086009185.1\|1699056_1699818_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_085193727.1\|1699841_1700621_+	ribonuclease PH	NA	NA	NA	NA
WP_161552160.1\|1700617_1701271_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	3.1e-08	32.4
WP_085193969.1\|1701353_1702757_-\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1978081 : 2032552

Mycobacterium_phage(55.88%)

integrase,capsid,tail,portal,tRNA,terminase

attL 1985847:1985880|attR 2032953:2032986

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085193465.1\|1978081_1979521_+\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	2.7e-49	30.1
WP_085193463.1\|1979534_1981553_-	TPM domain-containing protein	NA	NA	NA	NA
WP_085193461.1\|1982889_1983480_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_003921931.1\|1983539_1985435_+	DNA primase	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	4.3e-34	31.4
WP_039890788.1\|1985431_1985680_-	hypothetical protein	NA	NA	NA	NA
WP_161552163.1\|1985841_1986168_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
1985847:1985880	attL	NA	NA	NA	NA
WP_071700212.1\|1986244_1986457_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_085193459.1\|1986453_1987221_+	phage antirepressor KilAC domain-containing protein	A0A160DFU1	Gordonia_phage	1.8e-79	65.6
WP_161552066.1\|1987303_1987468_+	hypothetical protein	NA	NA	NA	NA
WP_085193455.1\|1987598_1987940_+	hypothetical protein	NA	NA	NA	NA
WP_085193453.1\|1987992_1988217_+	hypothetical protein	NA	NA	NA	NA
WP_161552067.1\|1988457_1989087_+	hypothetical protein	A0A088FBP5	Mycobacterium_phage	3.3e-68	71.8
WP_085193449.1\|1989134_1989563_+	hypothetical protein	NA	NA	NA	NA
WP_085193447.1\|1989559_1989865_+	hypothetical protein	NA	NA	NA	NA
WP_085193445.1\|1989858_1990185_+	WhiB family transcriptional regulator	A0A2P1CGA4	Mycobacterium_phage	8.1e-18	60.0
WP_161552068.1\|1990244_1991180_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A1B3B1R5	Gordonia_phage	6.5e-60	47.3
WP_112649932.1\|1991176_1992019_+	hypothetical protein	NA	NA	NA	NA
WP_085193439.1\|1992015_1992231_+	hypothetical protein	NA	NA	NA	NA
WP_085193437.1\|1992300_1993224_+	hypothetical protein	A0A0A0RSU0	Mycobacterium_phage	1.9e-35	36.4
WP_085193435.1\|1993220_1993658_+	hypothetical protein	NA	NA	NA	NA
WP_085193582.1\|1993910_1994498_+	hypothetical protein	A0A2P1JRG6	Mycobacterium_phage	9.1e-52	51.0
WP_085193433.1\|1994726_1995023_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_161552069.1\|1995860_1995998_+	hypothetical protein	NA	NA	NA	NA
WP_085193431.1\|1996082_1996334_+	hypothetical protein	NA	NA	NA	NA
WP_085193429.1\|1996352_1996706_+	DUF1870 family protein	A0A0R8VCJ1	Thermobifida_phage	2.0e-09	30.6
WP_085193427.1\|1997018_1997477_+	hypothetical protein	A0A2H4PE51	Mycobacterium_phage	1.3e-21	43.3
WP_085193425.1\|1997476_1997716_+	hypothetical protein	S5Y839	Mycobacterium_phage	6.2e-07	32.0
WP_161552164.1\|1997841_1998042_+	HNH endonuclease	NA	NA	NA	NA
WP_085193580.1\|1998283_1998685_+\|terminase	phage terminase small subunit P27 family	A0A142KAM7	Gordonia_phage	1.6e-23	44.6
WP_085193421.1\|1998638_2000384_+\|terminase	terminase large subunit	A0A1B3B1U6	Gordonia_phage	3.4e-219	65.0
WP_085193419.1\|2000554_2001943_+\|portal	phage portal protein	A0A1B3AYS8	Gordonia_phage	3.4e-182	68.9
WP_085193578.1\|2002985_2004419_+\|capsid	phage major capsid protein	A0A1B3AYS4	Gordonia_phage	6.9e-186	69.3
WP_085193415.1\|2004498_2004774_+	hypothetical protein	A0A0A7RVP2	Mycobacterium_phage	1.3e-13	60.9
WP_085193413.1\|2004766_2005345_+	hypothetical protein	A0A2H4PE58	Mycobacterium_phage	1.1e-33	46.5
WP_085193411.1\|2005341_2005683_+	hypothetical protein	M4W671	Mycobacterium_phage	2.7e-24	49.5
WP_085193409.1\|2005685_2006057_+	HK97 gp10 family phage protein	Q854Y8	Mycobacterium_virus	3.4e-20	41.1
WP_085193407.1\|2006053_2006488_+	hypothetical protein	A0A142K805	Mycobacterium_phage	1.0e-23	44.8
WP_085193405.1\|2007768_2008287_+	hypothetical protein	R4TQS6	Mycobacterium_phage	1.6e-12	30.3
WP_085193575.1\|2008258_2008630_+	hypothetical protein	A0A0A1EL60	Mycobacterium_phage	5.3e-05	48.0
WP_161552070.1\|2008648_2014534_+\|tail	phage tail tape measure protein	A0A0K2FPN7	Mycobacterium_phage	2.3e-203	60.5
WP_085193399.1\|2014533_2014725_+	hypothetical protein	Q854Y1	Mycobacterium_virus	5.2e-09	49.1
WP_161552071.1\|2017563_2018607_+	hypothetical protein	A0A068F4H6	Mycobacterium_phage	3.3e-28	28.7
WP_161552072.1\|2018689_2019709_+	hypothetical protein	NA	NA	NA	NA
WP_161552073.1\|2020053_2020953_+	hypothetical protein	Q855I5	Mycobacterium_virus	2.5e-08	42.5
WP_085193393.1\|2020973_2021267_+	hypothetical protein	A0A097EYN3	Mycobacterium_phage	7.8e-28	62.9
WP_085193391.1\|2021282_2021714_+	hypothetical protein	A0A2P1JQL8	Mycobacterium_phage	4.2e-46	71.1
WP_085193389.1\|2021723_2022134_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	4.0e-14	36.2
WP_161552074.1\|2022124_2022313_-	hypothetical protein	NA	NA	NA	NA
WP_161552075.1\|2022458_2023025_+	hypothetical protein	NA	NA	NA	NA
WP_161552076.1\|2023021_2023684_+	hypothetical protein	A0A222YUU8	Mycobacterium_phage	3.0e-67	63.8
WP_161552165.1\|2024015_2024333_+	hypothetical protein	G1BSE4	Mycobacterium_virus	7.4e-24	57.3
WP_161552166.1\|2025468_2025684_+	hypothetical protein	NA	NA	NA	NA
WP_085194429.1\|2025676_2026090_+	hypothetical protein	NA	NA	NA	NA
WP_085194431.1\|2026111_2026510_+	hypothetical protein	NA	NA	NA	NA
WP_031343732.1\|2026621_2026918_+	hypothetical protein	A0A076G998	Mycobacterium_phage	1.3e-35	79.1
WP_085194435.1\|2028357_2028570_+	hypothetical protein	Q854T3	Mycobacterium_virus	3.9e-13	57.6
WP_161552077.1\|2029453_2029810_-	DUF732 domain-containing protein	NA	NA	NA	NA
WP_085194437.1\|2030587_2031175_-	DUF2510 domain-containing protein	NA	NA	NA	NA
WP_085194440.1\|2031679_2032552_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1SGM4	Mycobacterium_phage	4.6e-60	48.2
2032953:2032986	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2262311 : 2268693

Burkholderia_virus(33.33%)

transposase,integrase

attL 2261493:2261508|attR 2267742:2267757

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2261493:2261508	attL	NA	NA	NA	NA
WP_161552083.1\|2262311_2263193_-	hypothetical protein	G8I4U5	Mycobacterium_phage	1.9e-16	37.1
WP_085194462.1\|2263201_2263489_-	hypothetical protein	NA	NA	NA	NA
WP_085194465.1\|2263569_2263950_+\|transposase	transposase	A0A0N6WF01	Escherichia_phage	5.4e-05	38.8
WP_085194467.1\|2263860_2264280_-\|transposase	transposase	NA	NA	NA	NA
WP_085194470.1\|2264269_2266486_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	1.3e-05	30.9
WP_085194472.1\|2266485_2267607_-\|integrase	tyrosine-type recombinase/integrase	S5MBZ0	Brevibacillus_phage	1.1e-13	33.1
WP_161552084.1\|2267822_2268347_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.4e-27	49.3
2267742:2267757	attR	NA	NA	NA	NA
WP_085194477.1\|2268315_2268693_+\|transposase	transposase	Q8W6R2	Burkholderia_virus	5.1e-32	67.4

DBSCAN-SWA_5

3072970 : 3081673

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112650147.1\|3072970_3073918_+	peptidylprolyl isomerase	A0A1V0SCU1	Indivirus	6.5e-07	32.3
WP_085198564.1\|3073931_3074669_-	hypothetical protein	A0A2D2W392	Mycobacterium_phage	5.7e-43	42.7
WP_039889773.1\|3074698_3075007_-	hypothetical protein	A0A023W6B1	Mycobacterium_phage	8.5e-17	56.8
WP_085198566.1\|3075306_3075696_+	hypothetical protein	NA	NA	NA	NA
WP_003919992.1\|3075780_3078144_-	RelA/SpoT family protein	A0A2I2L310	Orpheovirus	8.8e-13	39.7
WP_112650178.1\|3078203_3078782_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.3e-12	34.2
WP_085198570.1\|3080398_3081673_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.0e-20	27.1

DBSCAN-SWA_6

4520075 : 4576938

Gordonia_phage(42.86%)

integrase,transposase

attL 4556806:4556843|attR 4570918:4570955

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085193274.1\|4520075_4520318_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_085193217.1\|4520586_4521324_-	TIGR02391 family protein	NA	NA	NA	NA
WP_085193219.1\|4521335_4521656_-	hypothetical protein	NA	NA	NA	NA
WP_169714171.1\|4521985_4522339_-	hypothetical protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.3e-05	45.9
WP_161552136.1\|4522367_4523312_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_085193225.1\|4523655_4524864_-	cytochrome P450	NA	NA	NA	NA
WP_085193227.1\|4525053_4525599_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_085193229.1\|4525633_4526251_-	hypothetical protein	A0A2D1GPL9	Mycobacterium_phage	1.8e-26	46.6
WP_085193231.1\|4526481_4526928_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	3.7e-13	36.8
WP_085193234.1\|4526924_4528004_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_112650215.1\|4528000_4528507_-	VOC family protein	NA	NA	NA	NA
WP_003922418.1\|4528552_4528912_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085193236.1\|4529217_4530024_+	L,D-transpeptidase	NA	NA	NA	NA
WP_085193239.1\|4531986_4533489_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_003920695.1\|4533495_4534338_-	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_085193279.1\|4534512_4535367_-	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_003920693.1\|4535492_4535885_-	hypothetical protein	NA	NA	NA	NA
WP_161552137.1\|4536054_4537461_-	hypothetical protein	NA	NA	NA	NA
WP_085193243.1\|4537758_4539699_-	Hsp70 family protein	NA	NA	NA	NA
WP_085193245.1\|4539855_4541085_-	hypothetical protein	NA	NA	NA	NA
WP_085193247.1\|4541123_4541741_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_085193249.1\|4543139_4543898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_085193281.1\|4544019_4544511_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003922901.1\|4544519_4545176_-	L,D-transpeptidase	NA	NA	NA	NA
WP_085193251.1\|4545421_4547938_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	3.3e-26	34.9
WP_039891272.1\|4548017_4548332_+	DUF2563 family protein	NA	NA	NA	NA
WP_085196777.1\|4549044_4549533_+	hypothetical protein	NA	NA	NA	NA
WP_161552138.1\|4549760_4549979_+	DUF2563 family protein	NA	NA	NA	NA
WP_112650214.1\|4549957_4551838_+	hypothetical protein	NA	NA	NA	NA
WP_085193964.1\|4551834_4552257_+	hypothetical protein	NA	NA	NA	NA
WP_142688749.1\|4552682_4553039_+	hypothetical protein	NA	NA	NA	NA
WP_085193962.1\|4553128_4553623_+	hypothetical protein	NA	NA	NA	NA
WP_085193960.1\|4553820_4554153_-	hypothetical protein	NA	NA	NA	NA
WP_085193958.1\|4554244_4554478_-	hypothetical protein	NA	NA	NA	NA
WP_161552139.1\|4554989_4555130_-	hypothetical protein	NA	NA	NA	NA
WP_112650207.1\|4555128_4555869_+	DUF5631 domain-containing protein	NA	NA	NA	NA
WP_112650213.1\|4555939_4556785_+	hypothetical protein	NA	NA	NA	NA
4556806:4556843	attL	NA	NA	NA	NA
WP_085193030.1\|4557258_4557699_+	hypothetical protein	NA	NA	NA	NA
WP_139821098.1\|4558416_4558914_+	hypothetical protein	NA	NA	NA	NA
WP_161552193.1\|4559576_4560863_+	DUF5632 domain-containing protein	NA	NA	NA	NA
WP_112650247.1\|4561137_4561392_-\|transposase	transposase	NA	NA	NA	NA
WP_085197025.1\|4561635_4562679_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	8.4e-08	32.8
WP_085197023.1\|4562675_4564502_+\|integrase	tyrosine-type recombinase/integrase	A0A2P1CCU8	Gordonia_phage	1.1e-05	31.9
WP_085197027.1\|4566058_4567105_-\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	9.9e-09	25.4
WP_112650211.1\|4568637_4569126_+	hypothetical protein	NA	NA	NA	NA
WP_161552138.1\|4569353_4569572_+	DUF2563 family protein	NA	NA	NA	NA
WP_112650210.1\|4569550_4571470_+	glycohydrolase toxin TNT-related protein	NA	NA	NA	NA
4570918:4570955	attR	NA	NA	NA	NA
WP_139821100.1\|4572200_4572656_+	hypothetical protein	NA	NA	NA	NA
WP_161552140.1\|4572652_4573849_+	hypothetical protein	NA	NA	NA	NA
WP_161552139.1\|4574000_4574141_-	hypothetical protein	NA	NA	NA	NA
WP_112650209.1\|4574139_4574535_+	DUF5632 domain-containing protein	NA	NA	NA	NA
WP_085197824.1\|4574713_4575322_+	hypothetical protein	NA	NA	NA	NA
WP_112650246.1\|4575465_4576938_-\|transposase	IS1634 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection