CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022324	Pseudomonas putida strain TS312	1 crisprs	cas3,WYL,DEDDh,csa3,DinG,RT	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022324_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022324_1

5084752-5084848

Orphan

Consensus_repeat	Method
CATCCAGCTTGCCGCCATCCACCTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_AP022324_1

>merge|NZ_AP022324|1|5084752-5084848|CRISPRCasFinder
CATCCAGCTTGCCGCCATCCACCTGCGCGGCTTTCAGCGCGGCAACCTGCTCGTTCAGCCCCTTGAACTGGGCATCCAGCTTGCCCCCATCCACCTG

>NZ_AP022324|1|1|5084752-5084848|CRISPRCasFinder
CATCCAGCTTGCCGCCATCCACCTG	CGCGGCTTTCAGCGCGGCAACCTGCTCGTTCAGCCCCTTGAACTGGG
CATCCAGCTTGCCCCCATCCACCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022324.1\|WP_019099622.1\|5082328_5082913_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NZ_AP022324.1\|WP_019099621.1\|5081415_5082204_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP022324.1\|WP_025753943.1\|5083383_5084433_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NZ_AP022324.1\|WP_019099628.1\|5091445_5092783_+\|peptidase	unknown	unknown	gnl\|CDD\|226018
NZ_AP022324.1\|WP_019099631.1\|5096791_5097940_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_AP022324.1\|WP_019099626.1\|5087493_5088093_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_AP022324.1\|WP_027615388.1\|5079613_5080501_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|367175
NZ_AP022324.1\|WP_033694651.1\|5078458_5079538_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_AP022324.1\|WP_019099627.1\|5089233_5091288_+\|GGDEF-and-EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_AP022324.1\|WP_019099630.1\|5095460_5096558_+\|DUF1513-domain-containing-protein	unknown	unknown	gnl\|CDD\|226021
NZ_AP022324.1\|WP_016713610.1\|5080660_5081416_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225717
NZ_AP022324.1\|WP_027609139.1\|5085457_5086453_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_AP022324.1\|WP_012274023.1\|5088377_5088974_+\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_AP022324.1\|WP_016713598.1\|5094393_5095458_+\|imelysin-family-lipoprotein	unknown	unknown	gnl\|CDD\|226020
NZ_AP022324.1\|WP_019099623.1\|5083063_5083366_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_AP022324.1\|WP_027609142.1\|5077539_5078121_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|214870
NZ_AP022324.1\|WP_019099629.1\|5092945_5094373_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226019
NZ_AP022324.1\|WP_025753946.1\|5086502_5087393_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NZ_AP022324.1\|WP_027615390.1\|5078165_5078462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022324.1\|WP_025753936.1\|5076380_5077538_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419

Protein	Function_ID	Function_description	E-value
NZ_AP022324.1\|WP_019099622.1\|5082328_5082913_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	1.09782e-71
NZ_AP022324.1\|WP_019099621.1\|5081415_5082204_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.8697e-29
NZ_AP022324.1\|WP_025753943.1\|5083383_5084433_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NZ_AP022324.1\|WP_019099628.1\|5091445_5092783_+\|peptidase	gnl\|CDD\|226018	COG3487, IrpA, Uncharacterized iron-regulated protein [Inorganic ion transport and metabolism].	0
NZ_AP022324.1\|WP_019099631.1\|5096791_5097940_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.00306e-80
NZ_AP022324.1\|WP_025753936.1\|5076380_5077538_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	3.75622e-79
NZ_AP022324.1\|WP_027615388.1\|5079613_5080501_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|367175	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain. Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.	9.20482e-09
NZ_AP022324.1\|WP_033694651.1\|5078458_5079538_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	3.56051e-34
NZ_AP022324.1\|WP_019099627.1\|5089233_5091288_+\|GGDEF-and-EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.70563e-113
NZ_AP022324.1\|WP_019099630.1\|5095460_5096558_+\|DUF1513-domain-containing-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	1.08958e-150
NZ_AP022324.1\|WP_016713610.1\|5080660_5081416_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225717	COG3176, COG3176, Putative hemolysin [General function prediction only].	5.47419e-65
NZ_AP022324.1\|WP_027609139.1\|5085457_5086453_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.46228e-53
NZ_AP022324.1\|WP_016713598.1\|5094393_5095458_+\|imelysin-family-lipoprotein	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	1.36381e-115
NZ_AP022324.1\|WP_019099623.1\|5083063_5083366_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.2497e-16
NZ_AP022324.1\|WP_027609142.1\|5077539_5078121_-\|YceI-family-protein	gnl\|CDD\|214870	smart00867, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.47419e-21
NZ_AP022324.1\|WP_019099629.1\|5092945_5094373_+\|c-type-cytochrome	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
NZ_AP022324.1\|WP_019099626.1\|5087493_5088093_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	7.82175e-70
NZ_AP022324.1\|WP_012274023.1\|5088377_5088974_+\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.9361e-112
NZ_AP022324.1\|WP_025753946.1\|5086502_5087393_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	9.39413e-160

>NZ_AP022324.1|WP_025753943.1|5083383_5084433_+|alkene-reductase
MTTLFDPITLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVSAMGVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEIIDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGANRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEARPETFYGRGPVGYIDYPRL
>NZ_AP022324.1|WP_019099623.1|5083063_5083366_+|helix-turn-helix-transcriptional-regulator
MPLDLDEIIKALAHPVRREILSWLKDPATQFPDQHHSTENGVCAGQIDQRCGLSQSTVSAHLATLQRAGLIRSQKIGQWHFFKRDEATIEAFLEQLRQAL
>NZ_AP022324.1|WP_019099622.1|5082328_5082913_-|DUF479-domain-containing-protein
MNYLAHLHLGGPAPQQLLGSLYGDFVKGSLEGRFPPALEAAIRLHRHIDSYTDQHPLVLAALARFARERRRFAGIVLDVFFDHCLARHWQDYAEQPLAQFTGDFYRVLLAEPELPGRLARIAPFMAADDWLGAYGEFATLEQVFNGIARRLSRPEGMAGVMGELERLYEPLMADFREFYPQLQAFAAAGRMSDS
>NZ_AP022324.1|WP_019099621.1|5081415_5082204_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPKLRVMARLARLLLVLLLGMLMACLIALGERLGYKATIARRQRWTCLFMKRLVAALPFDVRVVGELPQRPMLWVSNHVSWTDIPLLGMLLPLSFLSKAEVRHWPVAGWLAEKAGTLFIRRGGGDSQRLREQIAGQLGLARPLLIFPEGTTTCGRTLRTFHGRLLAGAIDRGVAVQPVAIQYLRDGQIDPIAPFIGDDDLVSHLMRLFAQPRGEVCIHLLAPIGSVGKERAVLALQAQQVIHLALFGVEEVEAVPRRQARAA
>NZ_AP022324.1|WP_016713610.1|5080660_5081416_+|GNAT-family-N-acetyltransferase
MTRIALSGDNSTERRLQAERLVGATALQEAQALRYKVFSAEFKAKLKGAEQGLDMDDYDVHCRHIGVRDLSTGELVATTRLLDHQAASSLGRFYSEEEFRLHGLLQLQGPILELGRTCVAPDYRNGGTIAVLWGELAEVLNEGRYSYLMGCASIPMQDGGVQAHAVMQRLRDRYLCTEHLRAEPKNPLPNLALPGNVIAEMPPLLKAYMRLGAKICGEPCWDEDFQVADVFILLKRDELCPRYARHFKAAV
>NZ_AP022324.1|WP_027615388.1|5079613_5080501_-|acyl-CoA-dehydrogenase
MAWLQRLNDPLRQALAGTLGETYAVLLERLGPVAPFELAVLGGRAMATPGLAFLVGYQAALRVLWPSAPPSLGALCATERRSVRPADMHTRLDHLRLTGSKDFVTAGLDAEWLLVAARSEAPGAAPQLNLAVVYPGEPGVTLEPLPVLPLMPEVGHGRLVLEQAACELLAGDGWDAYVKPFRSLEDLYVLAALTAWLYGVGQECAWPQGLRLQLIGLLAGCAEGSRQCADSVGCHLLLGGLFAQFQALRGEVDAALAAGPAHWAQIWQRDQGVMGLAAAAREKRLNKAWAATGLS
>NZ_AP022324.1|WP_033694651.1|5078458_5079538_-|serine-hydrolase
MLKGLLLLFCMAMATAEAEDWPDPQWQTDPDTLNWQAVDTYAFPARTPDRSGIRTDALLIIRDGRILHERYAAPTTAATAHLTWSVSKSVLATLMGVAQGEGRFQLQDPVTRFYPAMRTHPGVRMTDLLHWASGLDWQEDYEYAPLKSSVVAMLYTRGHEDMAAYTAARGATASPGQRFLYSSGDSNLLAAALRGMLDAGQYAEYPWHALFTPLGIDGAVWERDQAGTYVGSSYLYLSARDLARIGLLMQREGRWQGRQLLPKAWVAFNRTPFAHAEPVPAEANPGGHWWLNQPLAGATRPWPNAPADTFAALGHWGQALYILPTQKLVIVRYADDRDGAYQHDELLKRVLAALAGEGA
>NZ_AP022324.1|WP_027615390.1|5078165_5078462_-|hypothetical-protein
MKRVLLLVLPGLVFWSWYERQALADFPGILSAYSAKEYCSCRFVMGFEQAYCQGYVKQWLPLSLLEENTPQRHIIAEGLGRRNQAAWLGPREGCRLLP
>NZ_AP022324.1|WP_027609142.1|5077539_5078121_-|YceI-family-protein
MFKLPRLLPALLLALCLPAHANWHLDGESSRLSFITGKNGDTAEVHRFLVLHGKVDRKGAAGLSIEMDSVSSGIPLRDERMRDDLFEVERFAEAKVQAQLDLRPINDLANGAQIELRLPLTVTLHGQSHSYNALLLATRLDERRFQVVTLEPLVLRAEDFGLLPGLQTLRKLAGLKSINPSVPVSAVLIFTAR
>NZ_AP022324.1|WP_025753936.1|5076380_5077538_-|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MPGPVFPWRDGNQFELLIDGPEFFPRMLTAIVRAEFQVDLELYLVEAGACAEAVVEALEQAARRGVRVRCLFDDYGSLAFNSTLRQRLLDAGVYLRWYNRLRWKRGLRNLYRDHRKLLLVDERWAVVGGTGVTDEFWTPGDATSEWHEVMVQIQGPVVTDWQLLFDRQWSANNRRTAWRPAEGFGLPRLPKLPAQGQGMGRVAYADARQHQDILHSLVRALNSGKQRVWLATPYFLPTWSVRRSLRRAASKGLDVRLLLTGPRTDHPSVRYAGHRYYPRLLRAGVRIFEYQPCFLHLKMAVVDDWVSVGSCNFDHWNLRFNLEANIEALDPPLTAAVVASFERDFALSEEVDLDHWHARPLWRRVKQRIWGWIDRLVVNLLDRRD
>NZ_AP022324.1|WP_027609139.1|5085457_5086453_-|NAD(P)-dependent-oxidoreductase
MRILVTGASGFIGGRFARFALEQGLDVRVSGRRAEGVEHLVKRGAQFIPGDLGDAELARRLCQGVEAVVHCAGAVGSWGRYQDFYQGNVVVTENVVEGCLKEHVRRLVHLSSPSIYFNGRSRLDVREDQVPRRFHDHYGQTKHLAEQKVFGAQEFGLEVLALRPRFVTGAGDASIFPKLMQMQRKGRVAIIGNGLNKVDFTSVHNLNEALLSALFADDRALGQAYNISNGQPLPLWDVVNYVMRQMQLPQVTRYRSYGLAYSLAALNEAACMLWPGRPQPTLSRLGMQVMSRDFTLDISRARQYLDYQPKVSLWTALDEFCGWWKHLPPEQ
>NZ_AP022324.1|WP_025753946.1|5086502_5087393_-|LysR-family-transcriptional-regulator-ArgP
MFDYKLLAALAAVIEQGGFERAAQVLGLSQSAISQRIKLLEARVGQPVLVRATPPGPTEVGRQLLNHVQQVRLLERDLQRQVPALDEEGMPERLRIALNADSLATWWAGAVGDFCAQQNVLTDLVVEDQEVGLKRMRAGEVAACLCGSERPVAGARSQPLGAMRYRALASPGFMARHFPQGFVASRLARTPAIVYGPDDFLQHRYLASLGIEDGFLHHLCPSSEGFLRMTEAGLGWGLVPELQAREQLASGQLVEICRDTPIDVPLYWHHWRNGGQLLAQLTDHLRYTARQWLVPL
>NZ_AP022324.1|WP_019099626.1|5087493_5088093_+|amino-acid-transporter
MWQSYLNGMLVAFGLIMAIGAQNAFVLAQSLRREHHLPVAALCIVCDAILVAAGVFGLATVLAHNPTLLAVARWGGAVFLIWYGAKALRSACSKQSLQHQEGQGMRSRRAVLLSALAVTLLNPHVYLDTVLLIGSLGAQQTAPGAYVAGAASASLLWFSTLAIGAAWLAPWLARPATWRMLDLMVAVMMFAVAAQLIFN
>NZ_AP022324.1|WP_012274023.1|5088377_5088974_+|superoxide-dismutase-[Fe]
MAFELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWNLVNWAFVAEQFEGKTFKA
>NZ_AP022324.1|WP_019099627.1|5089233_5091288_+|GGDEF-and-EAL-domain-containing-protein
MKLELRNSLSVKLLRVVLLSALAVGVVLSCAQIVYDTYKTRQAVNNDAQRILDMFRDPSTQAVYSLDREMGMQVMEGLFQDESVRMASIGHPNETMLAEKSRPLQDMSMRWLTDLILGQERTYTTQLVGRGPYSEYYGDLSITLDTSSYGEDFLINAVIIFISGVLRALAMGLVLYLVYHWLLTKPLSKIIEHLTQINPDRPSQHQIPLLKGHEKNELGLWVNTANQLLASIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQGFSELRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSARELTSFLKQAQRHQVSMF
>NZ_AP022324.1|WP_019099628.1|5091445_5092783_+|peptidase
MIRMPLASASLLAIAIALAGCGEGKDDKAAAPQAQAPAAASTTAAAPGAVDEAAGKAVVKHYAEMVHAVYSDSLSTAKTLQTAVDAFLAKPNDETLKAAKQAWFAARVPYLQSEAFRFGNTIIDDWEGQVNAWPLDEGLIDYVDKSYEHALGNPAAGANIIANTEIQVGEEKVDVKDITPEKLASLNELAGSEANVATGYHAIEFLLWGQDLNGTGPGAGNRPASDYLEGQGATGGHNERRRAYLKAVTQLLVTDLEEMVGNWAPNVADNYRAKLEAEPVNDGLRKMLFGMGSLSLGELAGERMKVSLEANSPEDEQDCFSDNTHYSHFYDAKGIRNVYLGEYTRPDGTKVTGPSLSSLVAKVDPAADATLKADLEATEAKIQVMVDHALKGEHYDQLIAADNAAGNQIVRDAIAALVKQTGAIEQAAGKLGIANLNPDTADHEF
>NZ_AP022324.1|WP_019099629.1|5092945_5094373_+|c-type-cytochrome
MSSSLSRLSPLMLVLALSACDDAPRFTQAEPGEALSGGKATVQRTDRNAYSLPSANLPAERRVDFAVGNSFFRNPWVIAPSTTTARDGLGPLFNTNACQNCHVRDGRGHPPEPGNSNAVGMLVRLSIPDQPYLAKVIERLGVVPEPVYGTQLQDMAIPGVAPEGKVRVSYTRETVSFKDGHQVELRKPTLQISQLGYGVMHPDTRFSARVAPPMIGLGLLEAIPEADLLANEDPDDHNRDGIRGRANRVWDDALGKTVVGRFGWKAGQPNVNQQNVHAFAGDMGLTSTLQPKDDCTPAQTDCLAAPNGDGANGEKEVSDNILRLVTFYTRNLAVPARRDVGSPQVLAGKNLFYQAGCQGCHTPQFTTAADAAEPELANQVIRPYSDLLLHDMGPGLADERTEFAANGQDWRTPPLWGIGLSETVSGHSQFLHDGRARDLLEAVLWHGGEAEAARNFVLTFNAEQRTALLAFLNSL
>NZ_AP022324.1|WP_016713598.1|5094393_5095458_+|imelysin-family-lipoprotein
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKQVILPTYSRWVEADRTLAASALAYCEGKEDLEKARADFLKAQKAWAELQPLLVGPLAEGNRAWQVQFWPDKKNLVGRQVEQLVNGDKPVDVASLGKASVVVRGLSAYEYILFDSKPDIATAEQKARYCPLLVAIGEHQKVLAEDILKSWNSTDGMLSQMTKFPNQRYADSHEAIADLLRSQVTALDTLKKKLGAPMGRQSKGIPQPLQAEAWRSHSSLKSLEATLKAAETVWVGVDNQGLRGLLSSDQKALADKIDAAYATSLKLLADNQKSLGELLADDAGQQTLNQIYDSLNAVHRLHEGDLAKALNIQLGFNANDGD
>NZ_AP022324.1|WP_019099630.1|5095460_5096558_+|DUF1513-domain-containing-protein
MLRRQALKLGSVLLSALTLGGWSLFRNKGSEPLLLSARDDGDGKHYAVGFRLDGTQVFSTQVAQRCHAIIHHPEQPIALFVARRPGTESYLVDLRDGRLLQTVTSQPNRHFYGHAVVHKGGEWLYATENDTTDPGRGVLGVYRFEGERLVHTGEIPTHGIGPHEVAWLPDGETLIVANGGIRTEAESRVEMNLNAMEPSLVLMQRDGTLLSKETLAQQMNSVRHLAVGSDGTIAACQQFMGDADETAELLAIKRPGEPFKAFPVPERQLQAMAQYTASVAIHSELRLVALTAPRANRLFVWDLDTGAVRLDAPMPDCAGVGAVKDGFVVTSGQGRCRFYDCTKAELVGQPMNLPSGFWDNHLHLV
>NZ_AP022324.1|WP_019099631.1|5096791_5097940_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MLRRRMLIMLAVVLLIVLALGGYKAFSIYQQIQVFTAPKPPITVAAALAEQRQWQARLPAVGSLKALQGVELSLEVEGIVKALHFDSGQQVKAGQLLLQLNDDQETALLGTAQADLGLAKVDFGRGSQLVGDSAISRGEFDRLTTQYRRNQAVVEQLKAQKIKKSINAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPQLSLGQQVLVQVAAYPGQTFPASLSAINPKVEETTRNLLVRATLANPDGKLLPGMFASLLVLLPNPQPQVVVPESAITYTLYGNSVYVATPKKDKDGKLENDDKGQPQLVAEQRTVQTGERRDGVVVVSKGLQAGEQVVTAGQLKLTPGAAIRIGQDKALKPQQGAPGKD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

780812 : 848263

Bacillus_phage(28.57%)

holin,protease,integrase

attL 777033:777052|attR 856276:856295

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
777033:777052	attL	NA	NA	NA	NA
WP_174244687.1\|780812_782774_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	1.2e-20	27.0
WP_025754082.1\|782845_783679_-	taurine dioxygenase	NA	NA	NA	NA
WP_016714450.1\|783727_784567_-	taurine ABC transporter permease TauC	NA	NA	NA	NA
WP_019096905.1\|784563_785352_-	taurine ABC transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	7.7e-30	35.4
WP_016714452.1\|785365_786337_-	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016714453.1\|786835_788167_+	OprD family porin	NA	NA	NA	NA
WP_019096904.1\|788332_788971_+	peroxiredoxin	NA	NA	NA	NA
WP_019096903.1\|789168_789762_+	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_019096902.1\|789846_790812_+	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_019096901.1\|790871_792020_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_016714458.1\|792030_792828_+	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_019096900.1\|792824_793637_+	aliphatic sulfonates ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-27	40.6
WP_003255829.1\|793677_793893_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_025754078.1\|793972_794605_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_026020326.1\|794604_796182_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_019096897.1\|796335_796719_-	PaaI family thioesterase	NA	NA	NA	NA
WP_019096896.1\|796718_799043_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_016484407.1\|799260_800001_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	7.7e-32	36.3
WP_016714463.1\|800014_801328_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	9.6e-09	25.3
WP_012316721.1\|801358_802264_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.0e-38	33.3
WP_174244688.1\|802260_802710_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_016714465.1\|802852_803254_+	RNA-binding protein S4	NA	NA	NA	NA
WP_084297256.1\|803281_804076_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_019096894.1\|804196_805096_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_019096893.1\|805275_806817_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	7.3e-125	46.5
WP_019096892.1\|806964_807405_+	thioesterase family protein	NA	NA	NA	NA
WP_019096891.1\|807461_807944_-	hypothetical protein	NA	NA	NA	NA
WP_161989602.1\|808140_810486_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_016714470.1\|810491_811322_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_019096889.1\|811499_811940_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	4.3e-06	51.9
WP_161989603.1\|811990_812653_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_016714473.1\|812717_813284_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_019096887.1\|813280_814099_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_019096886.1\|814211_814667_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_016714476.1\|814666_816073_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	6.6e-08	28.7
WP_025754073.1\|816069_817884_-	sensor histidine kinase	NA	NA	NA	NA
WP_161989604.1\|817926_818472_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-50	53.9
WP_019096883.1\|818750_819857_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	5.6e-103	50.8
WP_019096882.1\|820062_820260_+	hypothetical protein	NA	NA	NA	NA
WP_161989605.1\|820328_822404_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_016714482.1\|822880_824200_+	OprD family porin	NA	NA	NA	NA
WP_016714483.1\|824229_825897_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_027610168.1\|826034_827402_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_019096879.1\|827403_828126_-	response regulator	W8CYM9	Bacillus_phage	4.9e-31	34.3
WP_161989606.1\|828266_830564_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_016714487.1\|830945_832556_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_089230320.1\|832908_834051_+	Abi family protein	NA	NA	NA	NA
WP_080922078.1\|834218_834512_-	DCL family protein	NA	NA	NA	NA
WP_161989607.1\|834549_837138_-	DEAD/DEAH box helicase	A7J6T1	Paramecium_bursaria_Chlorella_virus	9.7e-13	26.2
WP_089230322.1\|837137_838076_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_089230343.1\|838521_839502_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_161989608.1\|840431_840773_-\|integrase	integrase	NA	NA	NA	NA
WP_019096874.1\|840904_841255_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_104883150.1\|841251_841575_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_161989609.1\|842119_844588_-	hypothetical protein	NA	NA	NA	NA
WP_080516504.1\|844762_845038_-	hypothetical protein	NA	NA	NA	NA
WP_161989610.1\|845034_846015_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_161989611.1\|846943_848263_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	1.3e-66	38.3
856276:856295	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1596761 : 1604540

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016713140.1\|1596761_1597616_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.2e-09	32.8
WP_016713139.1\|1597618_1598083_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1598095_1598404_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_025753783.1\|1598483_1599977_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_010952146.1\|1600153_1600879_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_012270658.1\|1600879_1601404_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_019099457.1\|1601390_1601963_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_016713136.1\|1601971_1602496_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	9.0e-27	47.4
WP_019099458.1\|1602507_1603482_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.7e-37	32.8
WP_016713134.1\|1603730_1604540_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5

DBSCAN-SWA_3

4094655 : 4103148

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003251184.1\|4094655_4095327_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_019096736.1\|4095531_4096911_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.3e-27	51.1
WP_019096735.1\|4097007_4097400_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	7.2e-53	79.8
WP_027608790.1\|4097401_4097761_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	4.0e-34	62.5
WP_019096733.1\|4097760_4098057_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.6e-25	60.6
WP_025753665.1\|4098053_4098389_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.7e-42	74.8
WP_027615034.1\|4098385_4099387_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.2e-155	80.2
WP_016711491.1\|4099483_4100443_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_016711493.1\|4101867_4103148_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.5e-96	54.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage