CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_AP019656	Vibrio panuliri strain JCM 19500 plasmid pVPan1, complete sequence	0 crisprs	NA	2
NZ_AP019654	Vibrio panuliri strain JCM 19500 chromosome 1	0 crisprs	DinG,RT,DEDDh,PD-DExK,cas3,csx1,csa3	3
NZ_AP019655	Vibrio panuliri strain JCM 19500 chromosome 2	0 crisprs	casR,DEDDh,csa3,cas3	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8966

uncultured_virus(50.0%)

terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075714993.1\|5596_6160_+	hypothetical protein	NA	NA	NA	NA
WP_075714995.1\|6230_6545_+	hypothetical protein	NA	NA	NA	NA
WP_075714997.1\|6562_6811_+	hypothetical protein	NA	NA	NA	NA
WP_075714999.1\|6800_7034_+	HNH endonuclease	A0A218MLF1	uncultured_virus	4.9e-09	47.3
WP_075715001.1\|7262_8966_+\|terminase	phage terminase large subunit	A0A2R2ZGE7	Ralstonia_phage	1.1e-177	57.6

DBSCAN-SWA_2

24839 : 45172

Ralstonia_phage(23.08%)

integrase,capsid

attL 24735:24750|attR 44452:44467

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
24735:24750	attL	NA	NA	NA	NA
WP_161987243.1\|24839_25364_+\|integrase	tyrosine-type recombinase/integrase	L7TK95	Rhizobium_phage	1.5e-13	32.6
WP_075715053.1\|25452_26370_-	hypothetical protein	NA	NA	NA	NA
WP_075715054.1\|27670_30241_+	hypothetical protein	A0A2R2ZGE5	Ralstonia_phage	2.3e-123	31.1
WP_075715055.1\|30258_30888_+	hypothetical protein	A0A192Y9Z1	Morganella_phage	8.9e-13	27.8
WP_075715056.1\|30865_31309_+	RusA family crossover junction endodeoxyribonuclease	A0A2H5BG01	Vibrio_phage	6.7e-15	46.0
WP_075715057.1\|31296_31563_+	hypothetical protein	NA	NA	NA	NA
WP_075715058.1\|31564_31960_+	hypothetical protein	NA	NA	NA	NA
WP_075715059.1\|32007_32247_+	hypothetical protein	NA	NA	NA	NA
WP_151148781.1\|32321_33539_+	toprim domain-containing protein	A0A096VKV8	Synechococcus_phage	1.2e-58	36.2
WP_075714964.1\|36325_37165_+	hypothetical protein	A0A2D2W4Z8	Ralstonia_phage	3.7e-46	37.9
WP_075714966.1\|37179_37359_+	DUF3310 domain-containing protein	A0A0F7LAX5	uncultured_marine_virus	1.3e-09	61.2
WP_075714968.1\|37339_37573_+	hypothetical protein	NA	NA	NA	NA
WP_075714970.1\|37576_38155_+	deoxynucleoside kinase	A0A068ELN8	Penguinpox_virus	2.8e-05	28.5
WP_075714972.1\|38443_38626_+	hypothetical protein	NA	NA	NA	NA
WP_075714974.1\|38633_40136_+	hypothetical protein	L7TJ79	Rhizobium_phage	4.8e-105	44.9
WP_075714976.1\|40149_40914_+	hypothetical protein	M4NJX6	Synechococcus_phage	5.2e-07	31.5
WP_075714978.1\|40983_42075_+\|capsid	phage major capsid protein	M1IPN0	Pelagibacter_phage	1.8e-40	32.5
WP_083626215.1\|42116_42776_+	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	3.8e-30	44.3
WP_075714982.1\|42820_45172_+	hypothetical protein	A0A160SY92	Pseudomonas_phage	3.0e-37	21.7
44452:44467	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP019654

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

168333 : 177426

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075715852.1\|168333_169275_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	8.6e-36	39.5
WP_075715851.1\|169356_170523_-	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	8.5e-118	56.6
WP_075715850.1\|170642_172556_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	2.8e-17	28.2
WP_075715869.1\|172558_173116_-	sugar transferase	NA	NA	NA	NA
WP_083626318.1\|173193_173775_-	class I SAM-dependent methyltransferase	A0A0E3FKP5	Synechococcus_phage	2.6e-11	32.4
WP_151148796.1\|173817_174942_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_075713990.1\|174950_175499_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.8e-44	47.0
WP_075713992.1\|175495_176362_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.6e-107	66.7
WP_075713994.1\|176358_177426_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-98	51.3

DBSCAN-SWA_2

2550075 : 2556777

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005440184.1\|2550075_2550546_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
WP_075706866.1\|2550731_2551841_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.7e-62	39.3
WP_075713374.1\|2551881_2552535_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.2e-33	39.0
WP_075713376.1\|2552537_2553644_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.5e-44	36.3
WP_075649526.1\|2553656_2554106_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_075706860.1\|2554240_2555491_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.5e-101	49.5
WP_075706858.1\|2555637_2556777_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.0e-63	41.7

DBSCAN-SWA_3

2588181 : 2596565

environmental_halophage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075716268.1\|2588181_2589393_+	cysteine desulfurase CsdA	Q2XUY6	environmental_halophage	2.4e-83	38.1
WP_075706802.1\|2589491_2589917_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-22	40.6
WP_075706801.1\|2589986_2591273_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.3e-34	32.0
WP_075716269.1\|2591425_2591620_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_075706799.1\|2591735_2592074_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_075716270.1\|2592085_2593939_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.7e-107	40.7
WP_075706797.1\|2593959_2594475_-	co-chaperone HscB	NA	NA	NA	NA
WP_075706796.1\|2594535_2594859_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	8.9e-25	52.3
WP_005592829.1\|2594925_2595306_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	6.9e-53	78.2
WP_075716271.1\|2595350_2596565_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	2.2e-31	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP019655

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

758318 : 767283

Skermania_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075713125.1\|758318_759293_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	4.4e-128	70.5
WP_075713123.1\|759310_761443_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.1e-207	50.6
WP_075713121.1\|761423_761834_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.2e-15	39.0
WP_075707318.1\|761833_762055_-	glutaredoxin-like protein NrdH	A0A0E3T8B5	Gordonia_phage	8.5e-11	42.9
WP_075707320.1\|762229_762598_+	iron-sulfur cluster assembly accessory protein	A0A2H4N7N5	Lake_Baikal_phage	7.5e-12	35.6
WP_075707322.1\|762599_764066_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_075713119.1\|764068_764815_+	Fe-S cluster assembly ATPase SufC	A0A1M7XV31	Cedratvirus	2.2e-10	30.3
WP_075713117.1\|764789_766061_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_075713115.1\|766050_767283_+	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	7.7e-85	40.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019656

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP019654

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_AP019655

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection