CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022348	Rhodocyclaceae bacterium ICHIJ1 plasmid pICHIJ1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_AP022347	Rhodocyclaceae bacterium ICHIJ1	0 crisprs	cas3,csa3,DEDDh,DinG,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

747122 : 757530

Bacillus_phage(12.5%)

integrase

attL 738855:738869|attR 758760:758774

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
738855:738869	attL	NA	NA	NA	NA
WP_162049375.1\|747122_747491_+	integration host factor subunit beta	A7KV42	Bacillus_phage	4.4e-12	44.4
WP_162049376.1\|747571_747871_+	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_162050882.1\|747884_749051_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_162049377.1\|749132_750302_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	2.8e-113	56.6
WP_162049378.1\|750301_751372_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-91	49.9
WP_162049379.1\|751374_752271_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.7e-29	34.2
WP_162049380.1\|752298_753228_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	R9S8D5	Prochlorococcus_phage	2.8e-15	26.5
WP_162049381.1\|753267_754272_+	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.5e-30	34.4
WP_162049382.1\|754249_755164_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	2.1e-55	41.8
WP_162049383.1\|755187_755985_+	3'-5' exonuclease	NA	NA	NA	NA
WP_162049384.1\|756291_757530_+\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	4.2e-91	47.2
758760:758774	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1220649 : 1229118

unidentified_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162050924.1\|1220649_1221837_+	aminotransferase class V-fold PLP-dependent enzyme	H7BUW1	unidentified_phage	1.2e-29	40.4
WP_174237200.1\|1221858_1223067_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	5.9e-29	29.4
WP_162049787.1\|1223097_1223481_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	81.5
WP_162049788.1\|1223494_1223818_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.4e-22	48.6
WP_162049790.1\|1223810_1224383_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_162049792.1\|1224413_1226336_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	2.3e-104	39.3
WP_162049795.1\|1226332_1226674_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_162050925.1\|1226683_1226875_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_162049797.1\|1226926_1227166_+	DUF2789 domain-containing protein	NA	NA	NA	NA
WP_162049799.1\|1227184_1228030_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_162049801.1\|1228035_1229118_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	3.1e-82	45.6

DBSCAN-SWA_3

1594326 : 1655890

Acidithiobacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162050093.1\|1594326_1595865_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	8.5e-166	58.6
WP_162050094.1\|1596004_1596529_+	hypothetical protein	NA	NA	NA	NA
WP_162050095.1\|1597019_1598213_+	NnrS family protein	NA	NA	NA	NA
WP_162050096.1\|1598209_1598581_-	PAS domain-containing protein	NA	NA	NA	NA
WP_162050097.1\|1599004_1600258_+	nitronate monooxygenase	NA	NA	NA	NA
WP_162050098.1\|1600309_1600615_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_162050099.1\|1600976_1602311_+\|transposase	IS5 family transposase	K4ICS3	Acidithiobacillus_phage	3.3e-57	49.2
WP_162050100.1\|1602636_1603026_-	SirB2 family protein	NA	NA	NA	NA
WP_162050101.1\|1603168_1603858_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_162050102.1\|1603860_1604571_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_162050103.1\|1604567_1606094_-	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	3.1e-19	37.5
WP_162050104.1\|1606096_1609855_-	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_162050105.1\|1609898_1611281_-	NarK family nitrate/nitrite MFS transporter	NA	NA	NA	NA
WP_162050106.1\|1611306_1612563_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_162050107.1\|1612832_1614686_+	type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein	NA	NA	NA	NA
WP_162050108.1\|1614696_1615341_+	two-component system response regulator NarL	NA	NA	NA	NA
WP_162050109.1\|1615459_1616698_+	NnrS family protein	NA	NA	NA	NA
WP_162050110.1\|1616860_1617841_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_162050111.1\|1617844_1618834_+	bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB	NA	NA	NA	NA
WP_162050112.1\|1618826_1620068_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_162050113.1\|1620079_1620352_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_162050114.1\|1620353_1620845_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_162050115.1\|1620810_1621437_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_162050116.1\|1621414_1621783_+	hypothetical protein	NA	NA	NA	NA
WP_162050117.1\|1621779_1622889_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_162050118.1\|1622888_1623632_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_162050119.1\|1623665_1623935_-	DUF2249 domain-containing protein	NA	NA	NA	NA
WP_162050951.1\|1623964_1624225_-	DUF2249 domain-containing protein	NA	NA	NA	NA
WP_162050120.1\|1625619_1626738_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_162050121.1\|1626730_1627477_+	TSUP family transporter	NA	NA	NA	NA
WP_162050122.1\|1627896_1628097_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_162050123.1\|1628118_1628730_-	hypothetical protein	NA	NA	NA	NA
WP_162050124.1\|1628729_1628996_-	DUF2249 domain-containing protein	NA	NA	NA	NA
WP_162050125.1\|1629017_1629278_-	DUF2249 domain-containing protein	NA	NA	NA	NA
WP_162050126.1\|1629496_1630498_+	U32 family peptidase	NA	NA	NA	NA
WP_162050127.1\|1630502_1631396_+	U32 family peptidase	NA	NA	NA	NA
WP_162050128.1\|1631392_1631854_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_162050129.1\|1632030_1633194_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_162050130.1\|1633351_1634062_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_162050131.1\|1634081_1635275_+	NnrS family protein	NA	NA	NA	NA
WP_162050132.1\|1635277_1635685_-	PAS domain S-box protein	NA	NA	NA	NA
WP_162050133.1\|1636071_1637235_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_162050134.1\|1637284_1637749_-	hypothetical protein	NA	NA	NA	NA
WP_162050135.1\|1637904_1638225_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_162050136.1\|1638274_1639318_+	hypothetical protein	NA	NA	NA	NA
WP_162050137.1\|1639550_1639715_-	SPASM domain-containing protein	NA	NA	NA	NA
WP_162050138.1\|1641226_1642358_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.6e-12	28.4
WP_162050139.1\|1642456_1643383_+	universal stress protein	NA	NA	NA	NA
WP_162050140.1\|1643764_1645468_+	cation:proton antiporter	NA	NA	NA	NA
WP_162050141.1\|1645894_1646836_-	sodium-dependent bicarbonate transport family permease	NA	NA	NA	NA
WP_162050142.1\|1646999_1648343_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_162050143.1\|1649108_1649867_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_162050952.1\|1650001_1650988_+	ZIP family metal transporter	NA	NA	NA	NA
WP_162050144.1\|1651127_1652321_+	MFS transporter	NA	NA	NA	NA
WP_162050145.1\|1652849_1653080_+	DUF2789 domain-containing protein	NA	NA	NA	NA
WP_162050146.1\|1653157_1653439_+	hypothetical protein	NA	NA	NA	NA
WP_162050953.1\|1653710_1654028_-	HNH endonuclease	NA	NA	NA	NA
WP_162050147.1\|1654211_1654604_-	hypothetical protein	NA	NA	NA	NA
WP_162050138.1\|1654757_1655890_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.6e-12	28.4

DBSCAN-SWA_4

2203983 : 2214402

Streptococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162050619.1\|2203983_2205258_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.8e-95	48.2
WP_162050620.1\|2205241_2205805_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_162050621.1\|2205797_2206721_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.1e-33	30.4
WP_162050622.1\|2206808_2207159_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_162050998.1\|2207256_2207904_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_162050623.1\|2207909_2208989_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	7.0e-82	49.9
WP_162050624.1\|2209139_2209352_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_162050625.1\|2209440_2209896_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.4e-22	46.6
WP_162050626.1\|2209917_2211693_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.2e-68	40.0
WP_162050627.1\|2211855_2214402_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	6.8e-35	32.3

DBSCAN-SWA_5

2223619 : 2230885

uncultured_Caudovirales_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162050638.1\|2223619_2224003_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.5e-34	64.2
WP_162050639.1\|2224012_2224327_+	DUF190 domain-containing protein	A0A2H4J2R0	uncultured_Caudovirales_phage	4.9e-20	42.3
WP_162050640.1\|2224406_2225120_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_162050641.1\|2225134_2225827_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	4.5e-34	35.7
WP_162050642.1\|2225874_2227104_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	1.1e-30	33.3
WP_162050643.1\|2227137_2227920_-	phosphate ABC transporter ATP-binding protein PstB	G9BWD6	Planktothrix_phage	3.7e-16	30.4
WP_162050644.1\|2227929_2228775_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_162050999.1\|2228776_2229715_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_162050645.1\|2229838_2230885_-	phosphate ABC transporter substrate-binding protein PstS	A0A1D7SRJ6	Cyanophage	1.3e-48	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage