CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP041425	Escherichia coli strain STEC388 chromosome, complete genome	7 crisprs	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,DEDDh,c2c9_V-U4,DinG	8	14
NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	1 crisprs	DEDDh	2	1
NZ_CP041428	Escherichia coli strain STEC388 plasmid pSTEC388_3, complete sequence	0 crisprs	NA	0	1
NZ_CP041427	Escherichia coli strain STEC388 plasmid pSTEC388_2, complete sequence	0 crisprs	RT	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041425_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_1

1043984-1044195

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

3 spacers

The CRISPR arrays of NZ_CP041425_1

>merge|NZ_CP041425|1|1043984-1044195|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTCATACGTTTACGCTCAAAAAAGGCCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTGTTTTCACATGTTTTGTCACGGAAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP041425|1|1|1043984-1044195|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCATACGTTTACGCTCAAAAAAGGCCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGTTTTCACATGTTTTGTCACGGAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP041425|1|1|1043984-1044195|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCATACGTTTACGCTCAAAAAAGGCCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGTTTTCACATGTTTTGTCACGGAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP041425|1|1|1043984-1044195|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTCATACGTTTACGCTCAAAAAAGGCCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGTTTTCACATGTTTTGTCACGGAAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_000147666.1\|1050264_1051674_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP041425.1\|WP_000907716.1\|1052394_1053288_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP041425.1\|WP_001130266.1\|1053435_1054011_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP041425.1\|WP_000046812.1\|1033391_1034693_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP041425.1\|WP_001488307.1\|1054278_1055550_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP041425.1\|WP_000254738.1\|1037300_1037636_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP041425.1\|WP_096128733.1\|1051651_1052431_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP041425.1\|WP_000059307.1\|1048788_1050243_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP041425.1\|WP_001288227.1\|1042694_1042835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041425.1\|WP_001071648.1\|1037706_1038498_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP041425.1\|WP_096128731.1\|1044832_1046311_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP041425.1\|WP_000226815.1\|1034740_1036975_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP041425.1\|WP_001199973.1\|1042973_1043645_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP041425.1\|WP_000109367.1\|1054027_1054288_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP041425.1\|WP_000036723.1\|1040450_1041749_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041425.1\|WP_032294357.1\|1046337_1047615_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP041425.1\|WP_000210878.1\|1038725_1040363_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP041425.1\|WP_096128732.1\|1047933_1048719_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP041425.1\|WP_000581937.1\|1037052_1037301_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP041425.1\|WP_001268445.1\|1041808_1042681_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_000907716.1\|1052394_1053288_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.66577e-90
NZ_CP041425.1\|WP_001130266.1\|1053435_1054011_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP041425.1\|WP_000046812.1\|1033391_1034693_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP041425.1\|WP_001488307.1\|1054278_1055550_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.03162e-125
NZ_CP041425.1\|WP_000254738.1\|1037300_1037636_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP041425.1\|WP_096128733.1\|1051651_1052431_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.6737e-62
NZ_CP041425.1\|WP_000059307.1\|1048788_1050243_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
NZ_CP041425.1\|WP_000147666.1\|1050264_1051674_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP041425.1\|WP_001071648.1\|1037706_1038498_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP041425.1\|WP_096128731.1\|1044832_1046311_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.47846e-107
NZ_CP041425.1\|WP_000226815.1\|1034740_1036975_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP041425.1\|WP_001199973.1\|1042973_1043645_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP041425.1\|WP_000109367.1\|1054027_1054288_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	8.55479e-42
NZ_CP041425.1\|WP_000036723.1\|1040450_1041749_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041425.1\|WP_032294357.1\|1046337_1047615_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.36417e-29
NZ_CP041425.1\|WP_000210878.1\|1038725_1040363_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041425.1\|WP_096128732.1\|1047933_1048719_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.49769e-138
NZ_CP041425.1\|WP_000581937.1\|1037052_1037301_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP041425.1\|WP_001268445.1\|1041808_1042681_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.23512e-98

>NZ_CP041425.1|WP_001199973.1|1042973_1043645_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP041425.1|WP_001288227.1|1042694_1042835_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP041425.1|WP_001268445.1|1041808_1042681_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIAPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP041425.1|WP_000036723.1|1040450_1041749_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP041425.1|WP_000210878.1|1038725_1040363_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP041425.1|WP_001071648.1|1037706_1038498_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP041425.1|WP_000254738.1|1037300_1037636_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP041425.1|WP_000581937.1|1037052_1037301_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP041425.1|WP_000226815.1|1034740_1036975_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP041425.1|WP_000046812.1|1033391_1034693_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP041425.1|WP_096128731.1|1044832_1046311_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADSTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMEKFNIPRQMLFDVQMPGTILGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPETLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP041425.1|WP_032294357.1|1046337_1047615_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVNDNNNLRNTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLITNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP041425.1|WP_096128732.1|1047933_1048719_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAVICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWLPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP041425.1|WP_000059307.1|1048788_1050243_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP041425.1|WP_000147666.1|1050264_1051674_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP041425.1|WP_096128733.1|1051651_1052431_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPTMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP041425.1|WP_000907716.1|1052394_1053288_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP041425.1|WP_001130266.1|1053435_1054011_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP041425.1|WP_000109367.1|1054027_1054288_-|ferredoxin-family-protein
MSVAHNLWRVADAPHIVPADSVERQMVQRLINACPAGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP041425.1|WP_001488307.1|1054278_1055550_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDILQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSVRCL

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Crispr_ID: NZ_CP041425_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_2

1069893-1070471

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP041425_2

>merge|NZ_CP041425|2|1069893-1070471|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGACCGGAACACTTCCGCCTGACGTTTGCTTGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCTAAAAGACGCGTCGCCGCCAGGCGGCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATTAATCCGCGGCTGGCGATATCTCGCAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCTGTCGCCGTTGGCGGATTCTTTCCTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGATGACAGATCAAACAGCCGCAGAAGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCGTAATATCACCCGTCAGCGCCTTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGTTTGGTCCACCAAATGTTTGATGCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCAGGGTGTGATTCCGCATACCAAGCAGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCC

>NZ_CP041425|2|2|1069893-1070410|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGAACACTTCCGCCTGACGTTTGCTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTAATCCGCGGCTGGCGATATCTCGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGACAGATCAAACAGCCGCAGAAGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAATATCACCCGTCAGCGCCTTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041425|2|2|1069893-1070410|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGAACACTTCCGCCTGACGTTTGCTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTAATCCGCGGCTGGCGATATCTCGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGACAGATCAAACAGCCGCAGAAGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAATATCACCCGTCAGCGCCTTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041425|2|2|1069893-1070471|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGGAACACTTCCGCCTGACGTTTGCTTGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGATTAATCCGCGGCTGGCGATATCTCGCAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGACAGATCAAACAGCCGCAGAAGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAATATCACCCGTCAGCGCCTTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCACTGGATGCGATGATGGATATCACTTA
GAATTCCCCGCCCCTGCGGTAGAACACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_000281469.1\|1067937_1068588_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP041425.1\|WP_000063176.1\|1069502_1069796_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP041425.1\|WP_000568943.1\|1076805_1077855_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP041425.1\|WP_001084112.1\|1064036_1065599_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041425.1\|WP_000029329.1\|1065595_1066132_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP041425.1\|WP_000372108.1\|1071780_1072689_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP041425.1\|WP_001219242.1\|1076329_1076809_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP041425.1\|WP_024173839.1\|1060892_1061045_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP041425.1\|WP_000490426.1\|1070491_1071529_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP041425.1\|WP_000206440.1\|1066143_1067199_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041425.1\|WP_096128738.1\|1072690_1074118_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP041425.1\|WP_000246138.1\|1075619_1076330_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP041425.1\|WP_001246104.1\|1074772_1075096_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP041425.1\|WP_000085063.1\|1067209_1067956_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041425.1\|WP_096128734.1\|1058106_1059819_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP041425.1\|WP_096128735.1\|1059893_1060628_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041425.1\|WP_001295182.1\|1077835_1078597_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP041425.1\|WP_001173673.1\|1074117_1074723_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP041425.1\|WP_096128736.1\|1061239_1063939_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP041425.1\|WP_000517476.1\|1075289_1075601_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_000281469.1\|1067937_1068588_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	9.89098e-90
NZ_CP041425.1\|WP_000063176.1\|1069502_1069796_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP041425.1\|WP_000568943.1\|1076805_1077855_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP041425.1\|WP_001084112.1\|1064036_1065599_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP041425.1\|WP_000029329.1\|1065595_1066132_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP041425.1\|WP_000372108.1\|1071780_1072689_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP041425.1\|WP_001219242.1\|1076329_1076809_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP041425.1\|WP_024173839.1\|1060892_1061045_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	1.24584e-10
NZ_CP041425.1\|WP_000490426.1\|1070491_1071529_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP041425.1\|WP_000206440.1\|1066143_1067199_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.62632e-155
NZ_CP041425.1\|WP_096128738.1\|1072690_1074118_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP041425.1\|WP_000246138.1\|1075619_1076330_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP041425.1\|WP_001246104.1\|1074772_1075096_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP041425.1\|WP_000085063.1\|1067209_1067956_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.09377e-49
NZ_CP041425.1\|WP_096128734.1\|1058106_1059819_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP041425.1\|WP_096128735.1\|1059893_1060628_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.02846e-136
NZ_CP041425.1\|WP_001295182.1\|1077835_1078597_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP041425.1\|WP_001173673.1\|1074117_1074723_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP041425.1\|WP_096128736.1\|1061239_1063939_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.1374e-180
NZ_CP041425.1\|WP_000517476.1\|1075289_1075601_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62

>NZ_CP041425.1|WP_000063176.1|1069502_1069796_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP041425.1|WP_000281469.1|1067937_1068588_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGGVRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTAPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP041425.1|WP_000085063.1|1067209_1067956_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVAPTPEAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP041425.1|WP_000206440.1|1066143_1067199_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP041425.1|WP_000029329.1|1065595_1066132_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP041425.1|WP_001084112.1|1064036_1065599_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDISAPRADLQGAVWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALQSLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWINVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDEQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP041425.1|WP_096128736.1|1061239_1063939_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMANKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>NZ_CP041425.1|WP_024173839.1|1060892_1061045_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVVDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP041425.1|WP_096128735.1|1059893_1060628_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAILRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041425.1|WP_096128734.1|1058106_1059819_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRLTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP041425.1|WP_000490426.1|1070491_1071529_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP041425.1|WP_000372108.1|1071780_1072689_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP041425.1|WP_096128738.1|1072690_1074118_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRKMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP041425.1|WP_001173673.1|1074117_1074723_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP041425.1|WP_001246104.1|1074772_1075096_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP041425.1|WP_000517476.1|1075289_1075601_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP041425.1|WP_000246138.1|1075619_1076330_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP041425.1|WP_001219242.1|1076329_1076809_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP041425.1|WP_000568943.1|1076805_1077855_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP041425.1|WP_001295182.1|1077835_1078597_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP041425_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_3

3024141-3024232

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041425_3

>merge|NZ_CP041425|3|3024141-3024232|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTCCCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP041425|3|3|3024141-3024232|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTCCCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_000777653.1\|3020772_3021573_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP041425.1\|WP_001018489.1\|3011724_3013233_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
NZ_CP041425.1\|WP_096129177.1\|3021582_3022173_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP041425.1\|WP_000420623.1\|3028587_3029508_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP041425.1\|WP_000024560.1\|3029507_3029813_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP041425.1\|WP_001044280.1\|3025537_3026779_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP041425.1\|WP_001126780.1\|3020378_3020765_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP041425.1\|WP_001408948.1\|3030501_3033048_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP041425.1\|WP_001424200.1\|3013655_3017618_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP041425.1\|WP_001307100.1\|3019674_3020367_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP041425.1\|WP_001004556.1\|3013391_3013544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041425.1\|WP_001352489.1\|3018583_3019675_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP041425.1\|WP_001120112.1\|3034349_3035042_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP041425.1\|WP_001028096.1\|3022183_3022678_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP041425.1\|WP_001151437.1\|3024655_3025252_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP041425.1\|WP_096129179.1\|3025272_3025500_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP041425.1\|WP_000526799.1\|3027071_3028328_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP041425.1\|WP_096129176.1\|3017657_3018296_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP041425.1\|WP_001230242.1\|3033047_3034220_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP041425.1\|WP_096129180.1\|3029905_3030505_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_000777653.1\|3020772_3021573_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.53291e-142
NZ_CP041425.1\|WP_001018489.1\|3011724_3013233_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
NZ_CP041425.1\|WP_096129177.1\|3021582_3022173_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.68154e-128
NZ_CP041425.1\|WP_000420623.1\|3028587_3029508_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP041425.1\|WP_000024560.1\|3029507_3029813_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP041425.1\|WP_001044280.1\|3025537_3026779_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP041425.1\|WP_001126780.1\|3020378_3020765_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP041425.1\|WP_001408948.1\|3030501_3033048_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP041425.1\|WP_001424200.1\|3013655_3017618_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP041425.1\|WP_001307100.1\|3019674_3020367_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP041425.1\|WP_001352489.1\|3018583_3019675_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP041425.1\|WP_001120112.1\|3034349_3035042_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP041425.1\|WP_001028096.1\|3022183_3022678_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	8.28716e-106
NZ_CP041425.1\|WP_001151437.1\|3024655_3025252_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP041425.1\|WP_096129179.1\|3025272_3025500_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	4.10026e-44
NZ_CP041425.1\|WP_000526799.1\|3027071_3028328_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP041425.1\|WP_096129176.1\|3017657_3018296_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.66743e-152
NZ_CP041425.1\|WP_001230242.1\|3033047_3034220_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP041425.1\|WP_096129180.1\|3029905_3030505_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	2.79841e-82

>NZ_CP041425.1|WP_001028096.1|3022183_3022678_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_CP041425.1|WP_096129177.1|3021582_3022173_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLQELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGEARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP041425.1|WP_000777653.1|3020772_3021573_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP041425.1|WP_001126780.1|3020378_3020765_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP041425.1|WP_001307100.1|3019674_3020367_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP041425.1|WP_001352489.1|3018583_3019675_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAVRMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP041425.1|WP_096129176.1|3017657_3018296_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLKVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFVPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP041425.1|WP_001424200.1|3013655_3017618_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSNTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKVNIERHIQTMRSKGRPVFQAVRKNNEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGEQAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP041425.1|WP_001004556.1|3013391_3013544_-|hypothetical-protein
MNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP041425.1|WP_001018489.1|3011724_3013233_-|sodium/proline-symporter-PutP
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFSSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES
>NZ_CP041425.1|WP_001151437.1|3024655_3025252_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP041425.1|WP_096129179.1|3025272_3025500_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLIKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP041425.1|WP_001044280.1|3025537_3026779_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP041425.1|WP_000526799.1|3027071_3028328_-|YccE-family-protein
MGNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYKEIRRQQAEDYIPCLECDSLEKEFEEIQNDNDLSLFMKTLRTNDKQIYSGVSGGITYTIQYVRDIDIVRVSFPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCLDDNENMSIQPERINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGGHKTQKQVYEEFIKIVDKQTIEALVDTAFYNLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDDDLEYGYLINTGNHYDVYLPPELFAQAYKLKNKEMNAQLDYLNRYAI
>NZ_CP041425.1|WP_000420623.1|3028587_3029508_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPNENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP041425.1|WP_000024560.1|3029507_3029813_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP041425.1|WP_096129180.1|3029905_3030505_-|molecular-chaperone-TorD
MTMLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVDELENRVATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALRQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP041425.1|WP_001408948.1|3030501_3033048_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP041425.1|WP_001230242.1|3033047_3034220_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP041425.1|WP_001120112.1|3034349_3035042_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP041425_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_4

3167778-3167926

Orphan

I-F

Consensus_repeat	Method
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041425_4

>merge|NZ_CP041425|4|3167778-3167926|CRISPRCasFinder,PILER-CR
GCATTTTATCTGTCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCTGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCGTTCGCAAAGGTTTTACCGCACCCCGTCGATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP041425|4|4|3167778-3167926|CRISPRCasFinder
GCATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCTGTGA
ATTTCTAAGCTGCCTGTACGGCAGTGAAC	GCGTTCGCAAAGGTTTTACCGCACCCCGTCG
ATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP041425|4|3|3167787-3167926|PILER-CR
CTGTCTGTACGGCAGTGAACATGGTGGGC	GGGTGGAGTATGTTACCTGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCGTTCGCA	AAGGTTTTACCGCACCCCGTCGATTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_001241678.1\|3166010_3166715_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP041425.1\|WP_001040187.1\|3166999_3167218_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP041425.1\|WP_000599806.1\|3175546_3177205_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP041425.1\|WP_000228473.1\|3160353_3160848_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP041425.1\|WP_001298299.1\|3177630_3178326_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP041425.1\|WP_001043579.1\|3162480_3164247_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP041425.1\|WP_000520781.1\|3170444_3170765_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP041425.1\|WP_096128795.1\|3171384_3173331_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP041425.1\|WP_161623690.1\|3156229_3160219_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP041425.1\|WP_000491142.1\|3178820_3179720_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP041425.1\|WP_000458809.1\|3179863_3181516_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP041425.1\|WP_000067748.1\|3154109_3155453_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP041425.1\|WP_001558907.1\|3152726_3154019_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP041425.1\|WP_000410785.1\|3171087_3171312_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP041425.1\|WP_001355621.1\|3174593_3175550_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP041425.1\|WP_000746460.1\|3173327_3174443_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP041425.1\|WP_096128796.1\|3164247_3165969_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP041425.1\|WP_000537403.1\|3161392_3162358_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP041425.1\|WP_000934041.1\|3168137_3170414_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP041425.1\|WP_001295343.1\|3155463_3156075_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_001241678.1\|3166010_3166715_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
NZ_CP041425.1\|WP_001040187.1\|3166999_3167218_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP041425.1\|WP_000599806.1\|3175546_3177205_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP041425.1\|WP_000228473.1\|3160353_3160848_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP041425.1\|WP_001298299.1\|3177630_3178326_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP041425.1\|WP_001043579.1\|3162480_3164247_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041425.1\|WP_000520781.1\|3170444_3170765_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP041425.1\|WP_096128795.1\|3171384_3173331_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP041425.1\|WP_161623690.1\|3156229_3160219_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP041425.1\|WP_000491142.1\|3178820_3179720_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	8.74036e-118
NZ_CP041425.1\|WP_000458809.1\|3179863_3181516_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP041425.1\|WP_000067748.1\|3154109_3155453_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP041425.1\|WP_001558907.1\|3152726_3154019_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP041425.1\|WP_000410785.1\|3171087_3171312_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP041425.1\|WP_001355621.1\|3174593_3175550_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.27645e-131
NZ_CP041425.1\|WP_000746460.1\|3173327_3174443_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP041425.1\|WP_096128796.1\|3164247_3165969_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP041425.1\|WP_000537403.1\|3161392_3162358_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP041425.1\|WP_000934041.1\|3168137_3170414_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP041425.1\|WP_001295343.1\|3155463_3156075_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125

>NZ_CP041425.1|WP_001040187.1|3166999_3167218_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP041425.1|WP_001241678.1|3166010_3166715_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP041425.1|WP_096128796.1|3164247_3165969_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVPGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGSIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESLRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP041425.1|WP_001043579.1|3162480_3164247_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP041425.1|WP_000537403.1|3161392_3162358_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHDHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP041425.1|WP_000228473.1|3160353_3160848_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP041425.1|WP_161623690.1|3156229_3160219_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVETAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP041425.1|WP_001295343.1|3155463_3156075_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP041425.1|WP_000067748.1|3154109_3155453_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDRGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP041425.1|WP_001558907.1|3152726_3154019_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVCDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP041425.1|WP_000934041.1|3168137_3170414_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP041425.1|WP_000520781.1|3170444_3170765_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP041425.1|WP_000410785.1|3171087_3171312_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP041425.1|WP_096128795.1|3171384_3173331_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYLAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP041425.1|WP_000746460.1|3173327_3174443_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP041425.1|WP_001355621.1|3174593_3175550_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP041425.1|WP_000599806.1|3175546_3177205_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP041425.1|WP_001298299.1|3177630_3178326_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP041425.1|WP_000491142.1|3178820_3179720_+|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP041425.1|WP_000458809.1|3179863_3181516_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP041425_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_5

3576933-3577029

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041425_5

>merge|NZ_CP041425|5|3576933-3577029|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>NZ_CP041425|5|5|3576933-3577029|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_096129380.1\|3584358_3584646_+\|S-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|225796
NZ_CP041425.1\|WP_001302767.1\|3587992_3589294_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP041425.1\|WP_001325208.1\|3583112_3584348_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP041425.1\|WP_096129378.1\|3578788_3580048_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP041425.1\|WP_161623705.1\|3567229_3568393_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP041425.1\|WP_000212252.1\|3574454_3575177_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP041425.1\|WP_001143558.1\|3571841_3572363_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP041425.1\|WP_000706344.1\|3586825_3587971_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP041425.1\|WP_000855378.1\|3577072_3577966_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP041425.1\|WP_000190288.1\|3571521_3571734_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP041425.1\|WP_096129377.1\|3573957_3574452_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP041425.1\|WP_032293926.1\|3589350_3590712_-\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP041425.1\|WP_000805428.1\|3568719_3569352_+\|fimbria-biosynthesis-transcriptional-regulator-FimZ	unknown	unknown	gnl\|CDD\|182154
NZ_CP041425.1\|WP_161623706.1\|3575800_3576868_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP041425.1\|WP_032293929.1\|3580057_3581725_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP041425.1\|WP_001295318.1\|3575294_3575804_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP041425.1\|WP_096129379.1\|3582041_3583091_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP041425.1\|WP_000912345.1\|3572398_3573784_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP041425.1\|WP_000152510.1\|3577962_3578778_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP041425.1\|WP_000729160.1\|3570653_3571520_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_096129380.1\|3584358_3584646_+\|S-ureidoglycine-aminohydrolase	gnl\|CDD\|225796	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only].	2.41387e-42
NZ_CP041425.1\|WP_001302767.1\|3587992_3589294_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP041425.1\|WP_001325208.1\|3583112_3584348_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP041425.1\|WP_096129378.1\|3578788_3580048_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
NZ_CP041425.1\|WP_161623705.1\|3567229_3568393_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.53851e-46
NZ_CP041425.1\|WP_000212252.1\|3574454_3575177_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
NZ_CP041425.1\|WP_001143558.1\|3571841_3572363_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.17059e-30
NZ_CP041425.1\|WP_000706344.1\|3586825_3587971_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP041425.1\|WP_000855378.1\|3577072_3577966_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP041425.1\|WP_000190288.1\|3571521_3571734_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP041425.1\|WP_096129377.1\|3573957_3574452_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	1.47292e-119
NZ_CP041425.1\|WP_032293926.1\|3589350_3590712_-\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP041425.1\|WP_000805428.1\|3568719_3569352_+\|fimbria-biosynthesis-transcriptional-regulator-FimZ	gnl\|CDD\|182154	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ.	1.43929e-141
NZ_CP041425.1\|WP_161623706.1\|3575800_3576868_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	9.98654e-177
NZ_CP041425.1\|WP_032293929.1\|3580057_3581725_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP041425.1\|WP_001295318.1\|3575294_3575804_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP041425.1\|WP_096129379.1\|3582041_3583091_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP041425.1\|WP_000912345.1\|3572398_3573784_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP041425.1\|WP_000152510.1\|3577962_3578778_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.57587e-37
NZ_CP041425.1\|WP_000729160.1\|3570653_3571520_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0

>NZ_CP041425.1|WP_161623706.1|3575800_3576868_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGACGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNSPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP041425.1|WP_001295318.1|3575294_3575804_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP041425.1|WP_000212252.1|3574454_3575177_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP041425.1|WP_096129377.1|3573957_3574452_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPDMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP041425.1|WP_000912345.1|3572398_3573784_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP041425.1|WP_001143558.1|3571841_3572363_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFNFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTAYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP041425.1|WP_000190288.1|3571521_3571734_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP041425.1|WP_000729160.1|3570653_3571520_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP041425.1|WP_000805428.1|3568719_3569352_+|fimbria-biosynthesis-transcriptional-regulator-FimZ
MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI
>NZ_CP041425.1|WP_161623705.1|3567229_3568393_+|site-specific-integrase
MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKEPPVYEPKPVSTQTKAKHLAMIKAILSAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSGIMEDIKKA
>NZ_CP041425.1|WP_000855378.1|3577072_3577966_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP041425.1|WP_000152510.1|3577962_3578778_-|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAAGDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP041425.1|WP_096129378.1|3578788_3580048_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLHAGPPMRWQEMTGPMKGECVGACLFEGWAKDEAQALAMLEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP041425.1|WP_032293929.1|3580057_3581725_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIAQAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIYPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP041425.1|WP_096129379.1|3582041_3583091_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQYLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP041425.1|WP_001325208.1|3583112_3584348_+|allantoate-deiminase
MITHFRQAIEEALPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNIYDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSIEKAKNMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKDLVATLTELCESEKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP041425.1|WP_096129380.1|3584358_3584646_+|S-ureidoglycine-aminohydrolase
MGYLNNVTGYRDDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVITVMTLTY
>NZ_CP041425.1|WP_000706344.1|3586825_3587971_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDAHYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGETVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNGIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQVLVANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP041425.1|WP_001302767.1|3587992_3589294_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP041425.1|WP_032293926.1|3589350_3590712_-|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKSEGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHICHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAVDIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: NZ_CP041425_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_6

4094424-4094553

Orphan

Consensus_repeat	Method
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041425_6

>merge|NZ_CP041425|6|4094424-4094553|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATAGCTGTCGGATGCGGCATAAACGCCTTATCCACCCCGGCTGGAGAGCAACCGTAGGCTGGATAAGATGCGCCAGCAT

>NZ_CP041425|6|6|4094424-4094553|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	CGCATCCGGCGATAGCTGTCGGATGCGGCATAAACGCCTTATCCACCCCG
GCTGGAGAGCAACCGTAGGCTGGATAAGATGCGCCAGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_000004655.1\|4103015_4103465_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|237908
NZ_CP041425.1\|WP_000083372.1\|4103589_4104084_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP041425.1\|WP_000543591.1\|4100095_4100917_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP041425.1\|WP_096101152.1\|4088881_4089412_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|367075
NZ_CP041425.1\|WP_096128718.1\|4095250_4098472_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP041425.1\|WP_001286857.1\|4104083_4106900_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP041425.1\|WP_000767329.1\|4106942_4107884_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP041425.1\|WP_096129489.1\|4087077_4088895_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|285585
NZ_CP041425.1\|WP_161623698.1\|4089426_4090236_-\|phage-tail-protein	unknown	unknown	unknown
NZ_CP041425.1\|WP_001166395.1\|4102063_4103014_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP041425.1\|WP_001487719.1\|4093795_4094386_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP041425.1\|WP_000597260.1\|4098489_4099638_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP041425.1\|WP_001239142.1\|4101083_4101998_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
NZ_CP041425.1\|WP_137466630.1\|4086081_4086777_-\|protein-mom	unknown	unknown	unknown
NZ_CP041425.1\|WP_065226821.1\|4090239_4090824_-\|DUF2313-domain-containing-protein	unknown	unknown	gnl\|CDD\|226301
NZ_CP041425.1\|WP_000333124.1\|4094594_4094990_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP041425.1\|WP_001557416.1\|4090796_4091885_-\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP041425.1\|WP_001487721.1\|4083624_4084104_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP041425.1\|WP_001557410.1\|4086727_4086913_-\|Com-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226843
NZ_CP041425.1\|WP_096101100.1\|4091874_4092327_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377830

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_000004655.1\|4103015_4103465_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	9.11961e-106
NZ_CP041425.1\|WP_000083372.1\|4103589_4104084_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.42141e-75
NZ_CP041425.1\|WP_000543591.1\|4100095_4100917_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	7.48238e-142
NZ_CP041425.1\|WP_096101152.1\|4088881_4089412_-\|phage-tail-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	2.89934e-20
NZ_CP041425.1\|WP_096128718.1\|4095250_4098472_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP041425.1\|WP_001286857.1\|4104083_4106900_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP041425.1\|WP_000767329.1\|4106942_4107884_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.26241e-173
NZ_CP041425.1\|WP_000597260.1\|4098489_4099638_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP041425.1\|WP_001166395.1\|4102063_4103014_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP041425.1\|WP_001487719.1\|4093795_4094386_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.48631e-141
NZ_CP041425.1\|WP_096129489.1\|4087077_4088895_-\|phage-tail-protein	gnl\|CDD\|285585	pfam08400, phage_tail_N, Prophage tail fibre N-terminal. This domain is found at the N-terminus of prophage tail fibre proteins.	9.68866e-25
NZ_CP041425.1\|WP_065226821.1\|4090239_4090824_-\|DUF2313-domain-containing-protein	gnl\|CDD\|226301	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown].	1.65737e-32
NZ_CP041425.1\|WP_000333124.1\|4094594_4094990_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.21297e-74
NZ_CP041425.1\|WP_001239142.1\|4101083_4101998_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
NZ_CP041425.1\|WP_001557416.1\|4090796_4091885_-\|baseplate-J/gp47-family-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	6.88153e-60
NZ_CP041425.1\|WP_001487721.1\|4083624_4084104_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07789e-126
NZ_CP041425.1\|WP_001557410.1\|4086727_4086913_-\|Com-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|226843	COG4416, Com, Mu-like prophage protein Com [General function prediction only].	2.24896e-06
NZ_CP041425.1\|WP_096101100.1\|4091874_4092327_-\|hypothetical-protein	gnl\|CDD\|377830	pfam07409, GP46, Phage protein GP46. This family contains GP46 phage proteins (approximately 120 residues long).	2.3405e-38

>NZ_CP041425.1|WP_001487719.1|4093795_4094386_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCGTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP041425.1|WP_096101100.1|4091874_4092327_-|hypothetical-protein
MTTGIHWNNMLSRGDITVTHNGLSRDEGLVTQVLICLFTDARADDDDVIPDGSGDPRGWPGDTYSDFSWGSRLWLLEREKLTEDVSLRVEDYARLSMQPLLRAGYARNAAVTARIIVPDRIAFQVVLTRPDKTTLTIEITRRWEATINAI
>NZ_CP041425.1|WP_001557416.1|4090796_4091885_-|baseplate-J/gp47-family-protein
MPYEIPTLGKLIADGEKDIAYELGLQKLPPVSVEQALNVSFSSQVRDLYDHQSWIKDQIIPSTASDDETIIKTATYEGVIRKQATFASGPVTFTSQSPIPAETRMQSDTNQVYQVLTSGEVQDGEVTVIVQAEEAGVAGNLAAGAVLTLLSPLPGTGSTGAVTESGITGGADIESIAELLDRLLYVRRNPPVGGALHDYVIWAREVPGVSRAWAWDAWHGPGTVGLAWLYDDREDIVPTREDLKTMEQYLFCHKHPATGVMVGKPGGIEVWPVQVRLIKVHLSIRLTPDSQVNRNAVRANLTALQKTLTPGQMLPVSSLRTAIGMTSGITDYFLNIGEDTTCDVDELITIGEVTWLTASRNG
>NZ_CP041425.1|WP_065226821.1|4090239_4090824_-|DUF2313-domain-containing-protein
MAHSVTEWLTALQQVMPRGKAWPRDNDADLNRFLRALAERLTRVEYDASRLHVEMRPETTLQLLPEWEQYLALPECGIAATTTEARRRAVVEKYRRKGGLATWQIEAAAAALGFTIKVTAVLPHHCLRDCMYPLHPARYRWLLKVEVPDNDAGRFTCIDDVMTPLISERTRELECLLKHYRLAGTEYEYYYTGE
>NZ_CP041425.1|WP_161623698.1|4089426_4090236_-|phage-tail-protein
MFHVDNPTGVPVMPPVAAELSKTTLYFTEGGNGIPPTYPGPDWFNIIQSELLEILRQANIKPDKNTTDQIMTALKKLFITNSGSAGAIAGLTGENNTFPYFTGEDTMALTPLSAFVRGILGKNTAGEIIEALSLRDTVNKANSAVPNTRKVNGMALSSDITISNISGNAGTATRLQTARRINNVPFDGTSDITISTTDSGAVRNFQYTNEVFYNPGGNEITWTFRAPSGCQLSGIYVQDTGGHSADNIGGVYYKSAQIYINGSWRTVSG
>NZ_CP041425.1|WP_096101152.1|4088881_4089412_-|phage-tail-protein
MELRNVSRYYPEEMPYGENIQYFRSEDGQDFYESVDKFTKKYKLCIHPETGVIYSMAEDVSRLYPAGFTIVEVDELPEGFGIEACWYYKDGEVLPVPVDYSQLAEKQRQRLLNEAKDITSDWKTELELGTISDDDKARLTQWMAYIKAVKALDLSTVTDEASFYSINWPERPDAAA
>NZ_CP041425.1|WP_096129489.1|4087077_4088895_-|phage-tail-protein
MPQLKGVIKTPTGEPLGGATITLTSLHNRAGILKSVFSHVTTQNGEYDFPVLPGVYSVRLTQSTQRLSEIGVIRVYEDSADGSLNDFLGATEIDLRPESLRRFEELADKVQENADTAASSSQQAVKILEAIQNIAGNISGLRYENFTDILSRCTTAMLKLEQPEVVDTSISLKIKENINFNYVGAVNGYCDIPEPEKYKIAMYTYTTGEYFNGDSNLNPDGSFYFRRCWPGAKQFRLIRIEDNAWITTLEFPLLIRSYWMPEDADPEVIRVMKDRCYTYDQALAALALMVQRHEAVERYVAGLCALVDENGGVKFFVNRLSAMSPRTYYRLGNAAWVYYALAFYLEKYPDGAQVNIVREKLLSGIIWLDSFLVTTPGDLREGLYKGGLGRYVNGEFDASFVAEWCALEHNVDIWFLFELMGRLGFDGFTKRAEKLAQSIIRGMWVEEEGRFRQGGHPTHYDNAAALDQSSWGGLFIANIDTGKAARCRKYMGRFLFGTRETTGYTPYHPDYGYSGHSRGVWVEGTAGVALFERKLGNELNAVNLIAAMAPLFNKFGYRDSCDDPTYDVLPPWPSTTNTAWIILTLKPENFWLVDSPEMDVGMIRY
>NZ_CP041425.1|WP_001557410.1|4086727_4086913_-|Com-family-DNA-binding-transcriptional-regulator
MDSVRCKNCNKLLFKGGFKHIEIKCPRCKRYIVISNAKEHPTELYCGKREEITRSDKTLRY
>NZ_CP041425.1|WP_137466630.1|4086081_4086777_-|protein-mom
MGKEKKSRVLTKPCVIEYEGRIVGYGSKELRVETISCWLARTIIQTKHYSRRFVNNSYLHLGVFSGRDLVGVLQWGYALNPNSGRRVVPGTDNRGYMELNRMWLHDDMPRNSESRAISYALKTIRLLYPSVEWVQSFADERCGRAGVVYQASNFDFIGSHESTFYELDGEWYHEITMNAIKRGGQRGVYLRANKERAVVHKFNQYRYIRFLNKRAKKRLNTKLFRIQPYPK
>NZ_CP041425.1|WP_001487721.1|4083624_4084104_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLAKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP041425.1|WP_000333124.1|4094594_4094990_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP041425.1|WP_096128718.1|4095250_4098472_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMINCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP041425.1|WP_000597260.1|4098489_4099638_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP041425.1|WP_000543591.1|4100095_4100917_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGCDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKENGLFDMRDVLDLNNL
>NZ_CP041425.1|WP_001239142.1|4101083_4101998_-|ribonucleoside-hydrolase-RihC
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVLALAS
>NZ_CP041425.1|WP_001166395.1|4102063_4103014_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD
>NZ_CP041425.1|WP_000004655.1|4103015_4103465_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA
>NZ_CP041425.1|WP_000083372.1|4103589_4104084_-|lipoprotein-signal-peptidase
MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSRAKKQ
>NZ_CP041425.1|WP_001286857.1|4104083_4106900_-|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELSAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA
>NZ_CP041425.1|WP_000767329.1|4106942_4107884_-|bifunctional-riboflavin-kinase/FAD-synthetase
MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA

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Crispr_ID: NZ_CP041425_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041425_7

4285479-4285628

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041425_7

>merge|NZ_CP041425|7|4285479-4285628|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>NZ_CP041425|7|7|4285479-4285628|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CGAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041425.1\|WP_001339084.1\|4279860_4281363_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP041425.1\|WP_001128335.1\|4277398_4278718_+\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP041425.1\|WP_096128700.1\|4276569_4277334_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP041425.1\|WP_001356015.1\|4295275_4295728_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP041425.1\|WP_000584114.1\|4282563_4283664_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP041425.1\|WP_001324326.1\|4278784_4279783_+\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP041425.1\|WP_000786399.1\|4285795_4286239_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP041425.1\|WP_000002953.1\|4291085_4291502_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP041425.1\|WP_001295681.1\|4281481_4282564_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP041425.1\|WP_000896738.1\|4274734_4275298_-\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP041425.1\|WP_000012904.1\|4291663_4292668_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP041425.1\|WP_001365282.1\|4273711_4274731_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP041425.1\|WP_032230420.1\|4295872_4296466_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041425.1\|WP_032285761.1\|4286238_4289094_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP041425.1\|WP_161623729.1\|4292816_4294376_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP041425.1\|WP_001544297.1\|4289147_4290344_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP041425.1\|WP_001059398.1\|4290536_4291040_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041425.1\|WP_000397144.1\|4283930_4285442_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP041425.1\|WP_000500696.1\|4296536_4297250_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP041425.1\|WP_096128701.1\|4275514_4276546_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130

Protein	Function_ID	Function_description	E-value
NZ_CP041425.1\|WP_001339084.1\|4279860_4281363_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP041425.1\|WP_001128335.1\|4277398_4278718_+\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP041425.1\|WP_096128700.1\|4276569_4277334_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP041425.1\|WP_001356015.1\|4295275_4295728_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.15006e-68
NZ_CP041425.1\|WP_000584114.1\|4282563_4283664_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP041425.1\|WP_001324326.1\|4278784_4279783_+\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	8.07519e-109
NZ_CP041425.1\|WP_000786399.1\|4285795_4286239_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP041425.1\|WP_000002953.1\|4291085_4291502_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP041425.1\|WP_001295681.1\|4281481_4282564_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP041425.1\|WP_000896738.1\|4274734_4275298_-\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP041425.1\|WP_000012904.1\|4291663_4292668_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP041425.1\|WP_001365282.1\|4273711_4274731_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.26161e-169
NZ_CP041425.1\|WP_032230420.1\|4295872_4296466_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	7.09491e-10
NZ_CP041425.1\|WP_032285761.1\|4286238_4289094_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP041425.1\|WP_001544297.1\|4289147_4290344_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	8.54933e-149
NZ_CP041425.1\|WP_001059398.1\|4290536_4291040_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
NZ_CP041425.1\|WP_000397144.1\|4283930_4285442_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP041425.1\|WP_000500696.1\|4296536_4297250_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	8.48078e-150
NZ_CP041425.1\|WP_096128701.1\|4275514_4276546_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0

>NZ_CP041425.1|WP_000397144.1|4283930_4285442_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP041425.1|WP_000584114.1|4282563_4283664_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP041425.1|WP_001295681.1|4281481_4282564_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP041425.1|WP_001339084.1|4279860_4281363_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRIQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP041425.1|WP_001324326.1|4278784_4279783_+|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGILLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLFPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP041425.1|WP_001128335.1|4277398_4278718_+|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP041425.1|WP_096128700.1|4276569_4277334_+|gluconate-5-dehydrogenase
MNVLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEREWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP041425.1|WP_096128701.1|4275514_4276546_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNRTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP041425.1|WP_000896738.1|4274734_4275298_-|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP041425.1|WP_001365282.1|4273711_4274731_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>NZ_CP041425.1|WP_000786399.1|4285795_4286239_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP041425.1|WP_032285761.1|4286238_4289094_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVSDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP041425.1|WP_001544297.1|4289147_4290344_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVDCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSFVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP041425.1|WP_001059398.1|4290536_4291040_+|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP041425.1|WP_000002953.1|4291085_4291502_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP041425.1|WP_000012904.1|4291663_4292668_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNNKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP041425.1|WP_161623729.1|4292816_4294376_-|DNA-binding-protein
MSKISDLNYSQHITSADNFKPKNEVLNTWCVGMNDFARIAGGQDSRRNILSPGAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMQFVMNNPEGERADLSKVEIEITLASAFTKGIREGHTAIIFSQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANKEIARLLNIPQELNNPHDLNYSQVSCKNSVDSTITDLLEKPLNNALLAIRKEHLLLMPYMCNESISYLLGEKWTLKEIDALNALNNYLINNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIGSILETFLKSPYINDVRILDWCFNKSMQYFGDSEKIKYACSVINHIDFSCDQSKIKIAETLFFNLDKEPYENSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFMRQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEKTNEIVKKHPGYVIKIFEEKMGNELKIRTRMMKILRNGKINIYEYMNI
>NZ_CP041425.1|WP_001356015.1|4295275_4295728_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTVETPKGKHDIEGNRLFYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP041425.1|WP_032230420.1|4295872_4296466_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGGAIKTILKE
>NZ_CP041425.1|WP_000500696.1|4296536_4297250_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAHETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041425_3	3.1\|3024167\|40\|NZ_CP041425\|CRISPRCasFinder	3024167-3024206	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP041425_2	2.9\|1070411\|32\|NZ_CP041425\|CRT	1070411-1070442	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
NZ_CP041425_1	1.1\|1044013\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1044013-1044044	32	NC_016515	Enterobacter ludwigii strain EcWSU1 plasmid pEcWSU1_A, complete sequence	45573-45604	7	0.781
NZ_CP041425_1	1.3\|1044135\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1044135-1044166	32	KR080197	Mycobacterium phage FlagStaff, complete genome	15476-15507	7	0.781
NZ_CP041425_2	2.3\|1070044\|33\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070044-1070076	33	NC_016592	Burkholderia sp. YI23 plasmid byi_3p, complete sequence	54505-54537	7	0.788
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_AP022602	Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399	61998-62029	7	0.781
NZ_CP041425_2	2.9\|1070411\|32\|NZ_CP041425\|CRT	1070411-1070442	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_CP041425_1	1.3\|1044135\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1044135-1044166	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	15418-15449	8	0.75
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	NC_019313	Sinorhizobium meliloti plasmid pHRC017, complete sequence	148711-148742	8	0.75
NZ_CP041425_2	2.7\|1070289\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070289-1070320	32	MK448454	Streptococcus satellite phage Javan361, complete genome	9192-9223	8	0.75
NZ_CP041425_2	2.9\|1070411\|32\|NZ_CP041425\|CRT	1070411-1070442	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_CP041425_1	1.3\|1044135\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1044135-1044166	32	NZ_CP009292	Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence	139210-139241	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP026242	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence	168728-168759	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP009883	Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence	5480-5511	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP010380	Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence	100871-100902	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP026171	Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence	69667-69698	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP026196	Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence	140212-140243	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	335649-335680	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	CP009869	Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence	51816-51847	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP042479	Citrobacter freundii strain C50 plasmid pC50_001, complete sequence	136819-136850	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	50052-50083	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP032179	Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence	65506-65537	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP026391	Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence	6461-6492	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP029142	Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence	256679-256710	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP031135	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence	47914-47945	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP011635	Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence	9471-9502	9	0.719
NZ_CP041425_2	2.4\|1070106\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070106-1070137	32	NZ_CP044111	Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2	384417-384448	9	0.719
NZ_CP041425_2	2.9\|1070411\|32\|NZ_CP041425\|CRT	1070411-1070442	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_CP041425_1	1.3\|1044135\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1044135-1044166	32	NZ_CP012383	Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence	14130-14161	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MF431732	Bacteriophage T5-like pork29, complete genome	86174-86205	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MF431731	Bacteriophage T5-like pork27, complete genome	86173-86204	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MH370378	Salmonella phage S131, complete genome	21344-21375	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MH370377	Salmonella phage S130, partial genome	21344-21375	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MF431733	Bacteriophage T5-like saus47N, complete genome	86174-86205	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MF431735	Bacteriophage T5-like poul124, complete genome	86183-86214	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	KU236381	Enterobacteria phage DT530 tail fiber protein AB gene, complete cds	474-505	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	NC_048865	Salmonella phage oldekolle, complete genome	34568-34599	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	NC_047749	Enterobacteria phage DT571/2, complete genome	75300-75331	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	KM979354	Enterobacteria phage DT57C, complete genome	74944-74975	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MF431734	Bacteriophage T5-like saus111K, complete genome	86174-86205	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	MN994502	Phage NBSal003, complete genome	34298-34329	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	NC_047885	Bacteriophage T5-like chee24, complete genome	86174-86205	10	0.688
NZ_CP041425_2	2.5\|1070167\|32\|NZ_CP041425\|PILER-CR,CRISPRCasFinder,CRT	1070167-1070198	32	KU159289	Enterobacteria phage DT571/2 mutant ABF fused tail fiber protein (ltfAB) gene, complete cds	444-475	10	0.688

1. spacer 3.1|3024167|40|NZ_CP041425|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcattcttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
************************ ***************

2. spacer 2.9|1070411|32|NZ_CP041425|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

ggcgcactggatgcgatgatggatatcactta	CRISPR spacer
gacgcactggatgcgatgatggacatcacttg	Protospacer
*.*********************.*******.

3. spacer 1.1|1044013|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_016515 (Enterobacter ludwigii strain EcWSU1 plasmid pEcWSU1_A, complete sequence) position: , mismatch: 7, identity: 0.781

attcatac---gtttacgctcaaaaaaggcctgcc	CRISPR spacer
---catgctttgtttacgcgcaaaaaagccctgct	Protospacer
   ***.*   ******** ******** *****.

4. spacer 1.3|1044135|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gacgccggcgccgcgatgccgttcgccgggtt	Protospacer
******* ******** ******. * . ***

5. spacer 2.3|1070044|33|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_016592 (Burkholderia sp. YI23 plasmid byi_3p, complete sequence) position: , mismatch: 7, identity: 0.788

-tggattaatccgcggctggcgatatctcgcagc	CRISPR spacer
ctaggtcag-ccgcagccggcgatatctcgcagc	Protospacer
 *.*.*.*. ****.**.****************

6. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022602 (Mycobacterium gallinarum strain JCM 6399 plasmid pJCM6399) position: , mismatch: 7, identity: 0.781

cccctgtcgccgttggcggattct---ttcctgta	CRISPR spacer
ccccggtcgccggtggcggattctgggtgcat---	Protospacer
**** ******* ***********   * * *

7. spacer 2.9|1070411|32|NZ_CP041425|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcactggatgcgatgatggat-atcactta	CRISPR spacer
ggcgcactggctgcgatgaaggacgatcaacc-	Protospacer
********** ******** ***. **** ..

8. spacer 1.3|1044135|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gtcgccgccgccgcgcagccctttccacagcc	Protospacer
* ************* **** *****.  *..

9. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_019313 (Sinorhizobium meliloti plasmid pHRC017, complete sequence) position: , mismatch: 8, identity: 0.75

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
cctgatgacggatcaaaaagccgcagtctcca	Protospacer
 ********.******* ********   *..

10. spacer 2.7|1070289|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75

tccgtttggtccaccaaatgtttgatgcttca	CRISPR spacer
tcttatcaatccaccaaatttttgattcttca	Protospacer
**.  *...********** ****** *****

11. spacer 2.9|1070411|32|NZ_CP041425|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcactggatgcgatgatggata---tcactta	CRISPR spacer
ggcgcactggaagcggtgatggaggggcgcac---	Protospacer
*********** ***.******* .    ***

12. spacer 1.3|1044135|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
gaagccgccgccgcgaacccgtttttcccggg	Protospacer
** ************** ******..  .*

13. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026242 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-eb27, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

14. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009883 (Pantoea sp. PSNIH1 plasmid pPSP-a3e, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

15. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010380 (Enterobacter hormaechei subsp. hormaechei strain 34983 plasmid p34983-328.905kb, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

16. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026171 (Leclercia sp. LSNIH1 plasmid pLEC-1cb1, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

17. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026196 (Enterobacteriaceae bacterium ENNIH1 plasmid pENT-1f0b, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

18. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

19. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to CP009869 (Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

20. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

21. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026208 (Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

22. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032179 (Citrobacter freundii strain AR_0116 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

23. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026391 (Leclercia sp. LSNIH3 plasmid pLEC-7c0d, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

24. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029142 (Klebsiella michiganensis strain AR375 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

25. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031135 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_1, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

26. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011635 (Klebsiella oxytoca strain CAV1374 plasmid pKPC_CAV1374, complete sequence) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

27. spacer 2.4|1070106|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044111 (Klebsiella michiganensis strain FDAARGOS_647 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

cccctgtcgccgttggcggattctttcctgta	CRISPR spacer
ccgtcctcgccgtcggcggcttctttcctcgc	Protospacer
** .. *******.***** *********

28. spacer 2.9|1070411|32|NZ_CP041425|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcactggatgcgatgatggatatcactta	CRISPR spacer
ggcgcactggaaccgatgatggatgcgatgag	Protospacer
***********  ***********.. *.  .

29. spacer 1.3|1044135|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

gacgccgccgccgcgaagccgtttccgatgtt	CRISPR spacer
ttgcccgccgcggcgaagccgcttccgtcctc	Protospacer
    ******* *********.***** . *.

30. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MF431732 (Bacteriophage T5-like pork29, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

31. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MF431731 (Bacteriophage T5-like pork27, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

32. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MH370378 (Salmonella phage S131, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

33. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MH370377 (Salmonella phage S130, partial genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

34. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MF431733 (Bacteriophage T5-like saus47N, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

35. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MF431735 (Bacteriophage T5-like poul124, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

36. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to KU236381 (Enterobacteria phage DT530 tail fiber protein AB gene, complete cds) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

37. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_048865 (Salmonella phage oldekolle, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

38. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_047749 (Enterobacteria phage DT571/2, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaatagccgcagaagctg	Protospacer
  .*  .  ** *****.**************

39. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to KM979354 (Enterobacteria phage DT57C, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

40. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MF431734 (Bacteriophage T5-like saus111K, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

41. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to MN994502 (Phage NBSal003, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

42. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to NC_047885 (Bacteriophage T5-like chee24, complete genome) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaacagctgcagaagctg	Protospacer
  .*  .  ** *********.**********

43. spacer 2.5|1070167|32|NZ_CP041425|PILER-CR,CRISPRCasFinder,CRT matches to KU159289 (Enterobacteria phage DT571/2 mutant ABF fused tail fiber protein (ltfAB) gene, complete cds) position: , mismatch: 10, identity: 0.688

gctgatgacagatcaaacagccgcagaagctg	CRISPR spacer
tgcgcaacaagctcaaatagccgcagaagctg	Protospacer
  .*  .  ** *****.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

779449 : 784285

Stx2-converting_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161623591.1\|779449_780094_-	antitoxin of toxin-antitoxin stability system	A0A2I6PI07	Pseudomonas_phage	1.4e-26	32.4
WP_000692353.1\|780112_780334_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186784.1\|780402_780879_-	RadC family protein	NA	NA	NA	NA
WP_000213706.1\|780893_781379_-	antirestriction protein	A9J566	Pseudomonas_phage	3.1e-13	31.7
WP_161623572.1\|781669_783241_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|783260_783608_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|783607_784285_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2

DBSCAN-SWA_2

930050 : 948976

Salmonella_phage(27.27%)

integrase

attL 921060:921074|attR 943309:943323

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
921060:921074	attL	NA	NA	NA	NA
WP_001301085.1\|930050_930806_+	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.1e-12	36.8
WP_001580988.1\|931122_932337_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.6e-138	61.1
WP_021567027.1\|932465_933263_+	hypothetical protein	NA	NA	NA	NA
WP_001580986.1\|933491_933689_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_161623596.1\|933765_934464_+	hypothetical protein	A0A0S2SYC0	Pseudomonas_phage	1.1e-11	38.7
WP_161623597.1\|934456_935200_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	1.6e-21	42.0
WP_161623598.1\|935192_935750_+	transporter	A0A1W6JPH8	Morganella_phage	7.3e-51	61.0
WP_001336359.1\|936706_936964_+	hypothetical protein	NA	NA	NA	NA
WP_161623599.1\|936966_937269_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_161623600.1\|937265_939392_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-173	53.3
WP_000126713.1\|939602_940028_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000164222.1\|940064_940562_+	ProQ/FinO family protein	Q2A0A1	Sodalis_phage	9.2e-13	46.3
WP_113402083.1\|940542_940959_+	hypothetical protein	A0A077SLR9	Escherichia_phage	1.2e-21	71.0
WP_000995640.1\|941325_941532_+	hypothetical protein	NA	NA	NA	NA
WP_113402084.1\|941628_944160_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	80.2
943309:943323	attR	NA	NA	NA	NA
WP_113402085.1\|944159_946220_+	hypothetical protein	Q858F9	Salmonella_phage	2.3e-203	59.8
WP_113402086.1\|946219_948976_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	89.2

DBSCAN-SWA_3

1077835 : 1091018

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295182.1\|1077835_1078597_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
WP_000254708.1\|1078590_1079217_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001272590.1\|1079356_1080496_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000081550.1\|1080558_1081551_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_000104429.1\|1081644_1083009_-	GntP family transporter	NA	NA	NA	NA
WP_001136918.1\|1083097_1083874_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_001278994.1\|1083878_1084517_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590392.1\|1084513_1085776_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000847974.1\|1085772_1086681_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.9e-118	76.9
WP_001272546.1\|1086846_1087644_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	4.5e-70	56.3
WP_001141320.1\|1087694_1088351_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	6.6e-51	47.0
WP_161623603.1\|1088456_1091018_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_4

1696799 : 1706241

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096128932.1\|1696799_1697726_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_096128931.1\|1697730_1698462_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1698442_1698550_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1698609_1699341_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1699562_1701248_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1701244_1701964_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1702010_1702481_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1702521_1702983_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_096128930.1\|1703107_1705108_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_161623622.1\|1705104_1706241_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	6.5e-163	98.0

DBSCAN-SWA_5

1864751 : 1911210

Escherichia_phage(37.5%)

tail,holin,lysis,transposase,integrase

attL 1849774:1849788|attR 1893486:1893500

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1849774:1849788	attL	NA	NA	NA	NA
WP_161623630.1\|1864751_1866014_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.4e-73	41.0
WP_000532912.1\|1868511_1869228_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001060244.1\|1869570_1871025_-	AMP nucleosidase	NA	NA	NA	NA
WP_000378572.1\|1871126_1872443_-	shikimate transporter	NA	NA	NA	NA
WP_000477878.1\|1872757_1873810_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_001300307.1\|1881636_1882434_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_096128842.1\|1882833_1883322_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	7.1e-26	41.6
WP_096128843.1\|1883333_1883819_+	hypothetical protein	NA	NA	NA	NA
WP_096128844.1\|1883856_1884864_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.7e-101	57.3
WP_000096344.1\|1884863_1885067_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_096128845.1\|1885125_1887597_-	exonuclease	K7PLW7	Enterobacteria_phage	3.8e-59	60.9
WP_064484537.1\|1887676_1887880_-	DUF1482 family protein	NA	NA	NA	NA
WP_064484538.1\|1887876_1888065_-	hypothetical protein	NA	NA	NA	NA
WP_096128846.1\|1888075_1888930_-	transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	1.8e-64	63.0
WP_001351093.1\|1889338_1889776_+	hypothetical protein	NA	NA	NA	NA
WP_000394534.1\|1889753_1890074_-	hypothetical protein	NA	NA	NA	NA
WP_086590109.1\|1890096_1890315_-	hypothetical protein	NA	NA	NA	NA
WP_001678562.1\|1890474_1890630_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.0e-07	53.2
WP_001303511.1\|1890922_1891201_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001302048.1\|1891202_1891394_-	hypothetical protein	NA	NA	NA	NA
WP_001169685.1\|1891414_1891786_-	hypothetical protein	NA	NA	NA	NA
WP_000172735.1\|1891883_1892186_+	transcriptional regulator	K7PHA1	Enterobacteria_phage	1.1e-05	34.8
WP_096128847.1\|1892182_1892608_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_140432539.1\|1892679_1893699_+	phage replisome organizer	A0A0U2RT81	Escherichia_phage	4.5e-99	88.8
1893486:1893500	attR	NA	NA	NA	NA
WP_074430107.1\|1893610_1894153_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-85	98.7
WP_140432540.1\|1894187_1894949_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.4e-115	87.4
WP_096128850.1\|1894964_1895387_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.6e-66	92.9
WP_096128851.1\|1895383_1895683_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	3.3e-50	97.0
WP_042004587.1\|1895729_1896140_+	hypothetical protein	A0A0H4ISY5	Shigella_phage	8.8e-70	93.7
WP_001296187.1\|1896117_1896474_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	3.9e-58	98.3
WP_063103481.1\|1896567_1896750_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	3.4e-26	95.0
WP_061092229.1\|1896915_1897275_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.6e-38	76.5
WP_032313438.1\|1897275_1897485_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	4.7e-35	95.7
WP_096129426.1\|1897481_1898054_+	DUF551 domain-containing protein	A0A2I6PID2	Escherichia_phage	1.8e-36	71.4
WP_000813254.1\|1898325_1898481_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_032231033.1\|1898648_1898921_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.1e-11	49.2
WP_096129427.1\|1898922_1899981_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-89	48.3
WP_000139994.1\|1899981_1900347_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.2e-39	67.5
WP_047662436.1\|1900343_1901009_+	antiterminator	I6PDF8	Cronobacter_phage	9.3e-61	52.4
WP_057108854.1\|1901263_1901977_+	hypothetical protein	NA	NA	NA	NA
WP_000917767.1\|1902150_1902348_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_096129428.1\|1902484_1903198_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096129429.1\|1903567_1904527_+	Shiga toxin Stx2 subunit A	Q6DWN9	Enterobacteria_phage	1.1e-168	96.2
WP_000738076.1\|1904538_1904808_+	Shiga toxin Stx2d subunit B	Q5TJL5	Enterobacteria_phage	3.0e-42	97.8
WP_096129430.1\|1904995_1905319_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.7e-60	99.1
WP_000284510.1\|1905584_1905800_+\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000193273.1\|1905804_1906119_+	YdfR family protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
WP_001274712.1\|1906174_1906708_+	lysozyme	K7PLY1	Enterobacteria_phage	3.4e-98	96.6
WP_001082535.1\|1907006_1907471_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	5.0e-61	83.6
WP_096129526.1\|1909062_1910031_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	8.5e-172	91.3
WP_161623748.1\|1910169_1911210_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_6

1939366 : 2007499

Vibrio_phage(54.29%)

tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042856701.1\|1939366_1940062_-	hypothetical protein	A0A0C4UQZ7	Shigella_phage	8.9e-131	97.4
WP_001372435.1\|1940012_1940198_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	7.5e-21	72.6
WP_161623632.1\|1940362_1942180_-\|tail	phage tail protein	NA	NA	NA	NA
WP_161623633.1\|1942166_1942697_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	9.0e-67	68.2
WP_161623634.1\|1942711_1943521_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	1.0e-29	83.6
WP_065226821.1\|1943524_1944109_-	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	2.5e-49	49.2
WP_106844709.1\|1944081_1945170_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	2.2e-91	51.0
WP_137494560.1\|1945159_1945612_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	8.3e-21	41.8
WP_161623635.1\|1945608_1946145_-\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	9.2e-27	39.7
WP_096129346.1\|1946135_1947206_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.7e-88	46.9
WP_161623636.1\|1947205_1948480_-	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	1.2e-77	39.2
WP_161623637.1\|1948479_1950330_-\|tail	phage tail protein	M4MHE6	Vibrio_phage	2.2e-123	52.4
WP_096129348.1\|1950416_1950812_-	hypothetical protein	M4MB64	Vibrio_phage	2.8e-20	48.7
WP_032239558.1\|1950813_1951170_-\|tail	Mu phage tail tube protein GpM	NA	NA	NA	NA
WP_096129349.1\|1951179_1952655_-\|tail	phage tail protein	M1Q565	Vibrio_phage	4.6e-153	55.3
WP_096129350.1\|1952659_1952863_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_096129351.1\|1952843_1953455_-	hypothetical protein	M1PJ94	Vibrio_phage	6.2e-35	43.8
WP_053289376.1\|1953451_1953994_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.7e-58	63.1
WP_000540583.1\|1953993_1954431_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.7e-34	49.7
WP_001557428.1\|1954813_1955716_-	hypothetical protein	M4MB71	Vibrio_phage	2.1e-100	57.2
WP_063269237.1\|1955715_1956678_-	peptidase	M1Q578	Vibrio_phage	1.7e-76	45.7
WP_063269274.1\|1956891_1957656_-	hypothetical protein	M4M9M5	Vibrio_phage	2.4e-92	60.5
WP_063269273.1\|1957648_1959220_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	1.5e-157	57.5
WP_161623750.1\|1959216_1960743_-	hypothetical protein	M1NVQ0	Vibrio_phage	3.5e-196	67.9
WP_062897834.1\|1960748_1961330_-	DUF3486 family protein	M1PJ86	Vibrio_phage	8.4e-50	55.5
WP_000101558.1\|1961467_1961767_-	hypothetical protein	NA	NA	NA	NA
WP_024168521.1\|1961769_1962057_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.6e-25	60.6
WP_001397890.1\|1962062_1962368_-	DUF2730 family protein	M1Q558	Vibrio_phage	1.6e-12	39.6
WP_109955406.1\|1962352_1962580_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_096098843.1\|1962576_1963185_-	hypothetical protein	NA	NA	NA	NA
WP_161623572.1\|1963498_1965070_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_161623638.1\|1965089_1965314_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	1.5e-10	78.4
WP_161623639.1\|1965290_1965995_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.7e-137	99.1
WP_000084745.1\|1966329_1966722_+	NimC/NimA family protein	NA	NA	NA	NA
WP_001376233.1\|1967041_1967326_-	bleomycin resistance protein	NA	NA	NA	NA
WP_001067858.1\|1967388_1968093_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001287392.1\|1968641_1969046_-	H-NS histone family protein	NA	NA	NA	NA
WP_000175476.1\|1969543_1969780_-	hypothetical protein	NA	NA	NA	NA
WP_001572344.1\|1969821_1970277_-	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|1970336_1971002_-	hypothetical protein	NA	NA	NA	NA
WP_001426317.1\|1971059_1971440_-	hypothetical protein	NA	NA	NA	NA
WP_000090707.1\|1972191_1973034_+\|transposase	transposase	NA	NA	NA	NA
WP_001641527.1\|1973020_1975144_+	hypothetical protein	NA	NA	NA	NA
WP_001049180.1\|1975143_1976592_+	ATP-binding protein	NA	NA	NA	NA
WP_001324699.1\|1976632_1978189_+\|transposase	transposase	NA	NA	NA	NA
WP_000262423.1\|1978200_1979127_+	hypothetical protein	NA	NA	NA	NA
WP_001097216.1\|1979479_1979779_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001239419.1\|1980342_1982169_+	AAA family ATPase	NA	NA	NA	NA
WP_000647571.1\|1982337_1982688_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	8.1e-16	61.4
WP_000790485.1\|1982835_1983267_-	silver-binding protein SilE	NA	NA	NA	NA
WP_000555736.1\|1983511_1984993_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.8e-27	30.1
WP_000697968.1\|1984985_1985666_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0
WP_000475506.1\|1985855_1987241_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246155.1\|1987268_1987622_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_000157620.1\|1987735_1989028_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_000574029.1\|1989038_1992185_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA
WP_000758225.1\|1992271_1992712_+	hypothetical protein	NA	NA	NA	NA
WP_001353604.1\|1992838_1995286_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	1.3e-83	35.3
WP_000843494.1\|1995326_1995524_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_000287501.1\|1995557_1996295_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.0e-12	41.0
WP_001067858.1\|1996452_1997157_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001351729.1\|1999400_1999793_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|1999930_2000815_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|2000846_2002046_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|2002151_2002802_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|2002833_2003076_-\|transposase	transposase	NA	NA	NA	NA
WP_001067858.1\|2006794_2007499_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_7

2098479 : 2144852

Enterobacteria_phage(44.12%)

tail,head,holin,lysis,transposase,protease,integrase,terminase

attL 2098316:2098343|attR 2129011:2129038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2098316:2098343	attL	NA	NA	NA	NA
WP_000113700.1\|2098479_2099610_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|2099587_2099836_-	excisionase	NA	NA	NA	NA
WP_096128999.1\|2099900_2101223_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.0e-56	56.0
WP_000392434.1\|2101978_2102743_+	serine/threonine protein kinase	I6PD73	Cronobacter_phage	1.7e-45	40.2
WP_000615424.1\|2102739_2103483_+	protein phosphatase	I6PCV8	Cronobacter_phage	7.7e-48	42.3
WP_000917767.1\|2103702_2103900_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_096129455.1\|2104050_2105100_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	1.1e-185	89.7
WP_000871291.1\|2105688_2106024_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_000874243.1\|2106284_2106473_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_096129454.1\|2106469_2106631_+	hypothetical protein	Q08JA2	Stx2-converting_phage	1.6e-14	89.1
WP_000372595.1\|2106780_2106996_+\|holin	holin	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_000193273.1\|2107000_2107315_+	YdfR family protein	K7PGU6	Enterobacteria_phage	8.3e-52	99.0
WP_001274712.1\|2107370_2107904_+	lysozyme	K7PLY1	Enterobacteria_phage	3.4e-98	96.6
WP_001082535.1\|2108202_2108667_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	5.0e-61	83.6
WP_000079508.1\|2108974_2109385_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_001331705.1\|2109442_2109676_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.5e-21	96.3
WP_001405844.1\|2110103_2110610_+	DNA-packaging protein	O64316	Escherichia_phage	1.6e-33	48.5
WP_044720325.1\|2110581_2112510_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.2e-259	65.9
WP_000259002.1\|2112493_2112700_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_161623572.1\|2113111_2114683_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|2114702_2115050_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|2115049_2115727_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_077756604.1\|2115799_2115997_+\|tail	phage tail protein	NA	NA	NA	NA
WP_096129334.1\|2115977_2118551_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	84.1
WP_000847379.1\|2118547_2118877_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152639.1\|2118876_2119575_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_001353245.1\|2119580_2120324_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.6e-147	96.8
WP_161623642.1\|2120260_2120893_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.5e-95	98.6
WP_096129332.1\|2120953_2124349_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.7
WP_096129331.1\|2124416_2125016_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	2.7e-99	89.4
WP_161623643.1\|2125080_2126910_+\|tail	phage tail protein	A0A2D1UII2	Escherichia_phage	7.2e-47	75.4
WP_000239886.1\|2127420_2128089_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937495.1\|2128145_2128415_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_096129093.1\|2129188_2129695_-	ferritin-like domain-containing protein	NA	NA	NA	NA
2129011:2129038	attR	NA	NA	NA	NA
WP_001056490.1\|2129740_2130241_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|2130326_2130506_-	general stress protein	NA	NA	NA	NA
WP_000443067.1\|2130886_2131693_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_032294060.1\|2131692_2132886_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_053889810.1\|2132897_2134256_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	8.6e-37	40.7
WP_000763511.1\|2134259_2135855_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_032294061.1\|2135854_2137417_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|2137508_2137553_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285661.1\|2137690_2138572_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|2138568_2139189_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001300853.1\|2139216_2141112_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291217.1\|2141322_2142198_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278906.1\|2142237_2142828_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559268.1\|2142824_2143583_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.7e-07	23.9
WP_000422045.1\|2143802_2144852_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_8

2589894 : 2635821

Enterobacteria_phage(76.0%)

tail,head,holin,plate,integrase,capsid,tRNA,terminase,portal

attL 2592297:2592321|attR 2628462:2628486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000029466.1\|2589894_2590644_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2
WP_001154183.1\|2590643_2591195_-	bifunctional thioredoxin/glutathione peroxidase	NA	NA	NA	NA
WP_000956529.1\|2591257_2592238_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
2592297:2592321	attL	NA	NA	NA	NA
WP_001280914.1\|2592430_2592868_-	DUF1640 domain-containing protein	NA	NA	NA	NA
WP_138984020.1\|2592979_2593378_-	hypothetical protein	NA	NA	NA	NA
WP_001247202.1\|2593364_2594318_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	2.6e-80	51.3
WP_000904674.1\|2594406_2594715_-	helix-turn-helix transcriptional regulator	A0A0M5M1I9	Salmonella_phage	8.7e-22	52.1
WP_001151410.1\|2594811_2595090_+	hypothetical protein	NA	NA	NA	NA
WP_096129458.1\|2595104_2595443_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	4.9e-50	83.6
WP_000158978.1\|2595453_2595732_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	5.4e-31	70.7
WP_000357029.1\|2595743_2595986_+	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.0e-29	80.0
WP_000021660.1\|2595982_2596096_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.8e-09	94.6
WP_096129459.1\|2596182_2596386_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.9e-26	86.6
WP_000153685.1\|2596382_2596628_+	winged helix-turn-helix domain-containing protein	A0A0A7NV47	Enterobacteria_phage	2.8e-39	96.3
WP_000104328.1\|2596624_2596924_+	ead/Ea22-like family protein	A0A0A7NRX6	Enterobacteria_phage	1.6e-41	89.9
WP_001036811.1\|2596935_2597139_+	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	1.4e-28	97.0
WP_000713738.1\|2597135_2597966_+	hypothetical protein	A0A0A7NPW9	Enterobacteria_phage	2.1e-131	99.3
WP_001116808.1\|2598019_2598640_+	hypothetical protein	S5MQL6	Escherichia_phage	1.5e-09	43.1
WP_161623669.1\|2598636_2599002_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	4.3e-52	85.6
WP_161623670.1\|2599008_2601831_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.8
WP_000686519.1\|2601907_2602867_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	2.0e-181	100.0
WP_161623671.1\|2602871_2603183_+	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	4.2e-48	95.1
WP_096129504.1\|2603576_2603891_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	8.3e-52	99.0
WP_122998051.1\|2603892_2604102_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	4.2e-36	98.6
WP_096129503.1\|2604098_2604440_+	hypothetical protein	H6WRY2	Salmonella_phage	4.5e-27	88.6
WP_027662232.1\|2605006_2605531_+	hypothetical protein	NA	NA	NA	NA
WP_161623672.1\|2605545_2606592_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	6.5e-202	99.4
WP_096129491.1\|2606591_2608343_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.1
WP_001262672.1\|2608497_2609334_+\|capsid	phage capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	6.0e-150	99.6
WP_074468410.1\|2609357_2610410_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	3.4e-198	99.7
WP_074468411.1\|2610455_2611256_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.7e-123	98.7
WP_074468412.1\|2611357_2611852_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	7.8e-89	98.8
WP_000864901.1\|2611851_2612052_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|2612054_2612378_+\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_001718591.1\|2612374_2612767_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	4.9e-70	98.5
WP_000780535.1\|2612763_2613171_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	7.2e-64	95.6
WP_000920594.1\|2613308_2613776_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.6e-86	100.0
WP_000356339.1\|2613768_2614404_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_001753459.1\|2614400_2614982_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.1e-102	99.0
WP_000213447.1\|2614978_2615329_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_001111951.1\|2615332_2616229_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	9.7e-154	97.3
WP_000071743.1\|2616221_2616830_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	2.6e-86	74.9
WP_161623673.1\|2616826_2619424_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	1.2e-108	67.1
WP_001025468.1\|2619470_2619632_+	helix-turn-helix domain-containing protein	A0A0A7NPV4	Enterobacteria_phage	1.4e-10	73.9
WP_000979954.1\|2619660_2620149_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
WP_074530385.1\|2620161_2622969_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	95.8
WP_000333494.1\|2622955_2623111_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.0e-22	98.0
WP_000665313.1\|2623119_2623485_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	6.4e-56	97.5
WP_000290450.1\|2623539_2624052_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
WP_161623674.1\|2624051_2625236_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.8e-224	98.7
WP_161623675.1\|2625393_2626503_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.3e-192	93.8
WP_000604994.1\|2626625_2627411_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_000488107.1\|2627606_2627867_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|2628057_2628198_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_001229265.1\|2628503_2628803_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
2628462:2628486	attR	NA	NA	NA	NA
WP_155555693.1\|2628807_2631195_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018596.1\|2631209_2632193_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_001386830.1\|2632476_2632521_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|2632643_2633000_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|2633052_2633250_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|2633346_2633889_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144202.1\|2633892_2635821_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.4e-130	37.3

DBSCAN-SWA_9

2835490 : 2902288

Shigella_phage(49.25%)

tail,head,holin,transposase,protease,plate,integrase,capsid,tRNA,terminase,portal

attL 2827618:2827632|attR 2895839:2895853

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2827618:2827632	attL	NA	NA	NA	NA
WP_096129526.1\|2835490_2836459_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	8.5e-172	91.3
WP_000146099.1\|2837581_2838994_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000287768.1\|2839008_2839419_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_001015023.1\|2839418_2839784_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_001245699.1\|2839861_2841349_+	alpha-amylase	NA	NA	NA	NA
WP_001295642.1\|2841382_2841796_-	lipoprotein	NA	NA	NA	NA
WP_000118901.1\|2841982_2843188_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000789493.1\|2843184_2843418_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000334585.1\|2843526_2844198_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.3e-81	60.8
WP_161623684.1\|2844182_2845346_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	1.4e-197	92.5
WP_001342382.1\|2845415_2845538_+\|transposase	transposase	A0A1S5RHE3	Helicobacter_phage	3.8e-05	55.0
WP_032232437.1\|2845538_2845784_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	7.4e-24	64.6
WP_000879835.1\|2846716_2847514_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000734031.1\|2847523_2848075_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001070440.1\|2848243_2848576_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001274299.1\|2848909_2849224_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_096129405.1\|2849438_2851097_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2851089_2852085_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_062897844.1\|2852714_2853302_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000987080.1\|2853442_2853679_+	DNA-binding protein	A0A2D1GNH1	Pseudomonas_phage	3.2e-16	53.4
WP_096129406.1\|2853681_2855769_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	1.4e-174	49.1
WP_000129606.1\|2855844_2856798_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	9.9e-56	40.3
WP_077627739.1\|2856813_2857038_+	hypothetical protein	C9DGL3	Escherichia_phage	3.4e-31	85.1
WP_047088006.1\|2857070_2857340_+	hypothetical protein	C9DGL5	Escherichia_phage	4.8e-32	98.9
WP_096098852.1\|2857360_2857780_+	hypothetical protein	A0A0C4UR25	Shigella_phage	3.8e-68	89.9
WP_042099546.1\|2857792_2858080_+	hypothetical protein	A0A0C4UQR4	Shigella_phage	2.2e-43	93.7
WP_001107927.1\|2858100_2858625_+	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	1.4e-88	96.6
WP_096129501.1\|2858723_2859263_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	4.7e-87	85.8
WP_159390727.1\|2859255_2859438_+	hypothetical protein	NA	NA	NA	NA
WP_042856716.1\|2859430_2859745_+	hypothetical protein	A0A0C4UQY6	Shigella_phage	3.6e-31	70.7
WP_079916120.1\|2859683_2859950_-	hypothetical protein	Q38493	Escherichia_phage	1.4e-15	52.3
WP_042856715.1\|2860023_2860575_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	6.5e-84	81.9
WP_040100375.1\|2860571_2861021_+	Middle operon regulator	A0A0C4UR27	Shigella_phage	4.2e-41	62.7
WP_096129506.1\|2861106_2861703_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	2.7e-35	42.8
WP_161623685.1\|2861704_2861956_+	hypothetical protein	A0A0C4UQR6	Shigella_phage	9.0e-25	67.6
WP_161623686.1\|2861930_2862107_+	hypothetical protein	NA	NA	NA	NA
WP_096101123.1\|2862106_2862784_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_000624622.1\|2862783_2863131_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_161623572.1\|2863150_2864722_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_096129233.1\|2865042_2865627_-	YmfQ family protein	O22003	Shigella_phage	3.5e-112	99.0
WP_096129234.1\|2865617_2866676_-\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	8.9e-199	97.7
WP_000424742.1\|2866662_2867088_-	hypothetical protein	U5P0R9	Shigella_phage	6.7e-81	99.3
WP_096129235.1\|2867087_2867636_-\|plate	phage baseplate assembly protein	Q8SBG6	Shigella_phage	1.5e-96	99.5
WP_096129236.1\|2867635_2868715_-\|plate	baseplate protein	U5P0H6	Shigella_phage	2.6e-206	99.7
WP_123015697.1\|2868711_2870040_-	DNA circularization protein	Q8SBG8	Shigella_phage	6.5e-247	99.3
WP_096129238.1\|2870150_2870597_+	hypothetical protein	NA	NA	NA	NA
WP_096129239.1\|2870628_2872461_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	1.1e-302	98.5
WP_000661054.1\|2872602_2872872_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_000090998.1\|2872871_2873228_-	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_096129241.1\|2873227_2874724_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	1.2e-270	98.4
WP_000497751.1\|2874707_2874878_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779279.1\|2874886_2875447_-	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_000213502.1\|2875443_2875950_-	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000702388.1\|2875924_2876335_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_000927719.1\|2876331_2876655_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000601360.1\|2876657_2876858_-	hypothetical protein	S5FNU1	Shigella_phage	3.8e-26	97.0
WP_052907892.1\|2876906_2878112_-\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	2.0e-223	99.3
WP_001193635.1\|2878126_2878777_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.4e-117	98.6
WP_001407096.1\|2878754_2879996_-\|portal	phage portal protein	U5P411	Shigella_phage	1.0e-241	99.3
WP_001407095.1\|2879995_2880178_-	hypothetical protein	S5FXQ9	Shigella_phage	1.9e-24	96.7
WP_072011717.1\|2880189_2881686_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	7.4e-300	99.8
WP_021576717.1\|2881919_2882414_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.5e-87	98.8
WP_044687619.1\|2882539_2882890_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	2.3e-63	95.7
WP_122986503.1\|2882916_2883189_-	peptidase	Q8SBD8	Shigella_phage	2.4e-39	97.7
WP_024221340.1\|2883073_2883466_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	5.8e-63	98.5
WP_001157006.1\|2883449_2883926_-	glycoside hydrolase family protein	S5FV07	Shigella_phage	1.0e-85	95.6
WP_001120491.1\|2883929_2884256_-\|holin	phage holin, lambda family	S5FM86	Shigella_phage	6.8e-57	99.1
WP_024221339.1\|2884553_2885369_+	TIR domain-containing protein	K7PLZ9	Enterobacterial_phage	1.8e-82	59.2
WP_086258419.1\|2885408_2885777_-	antitermination protein Q	A5LH77	Enterobacteria_phage	8.8e-53	82.5
WP_024221336.1\|2885791_2886781_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	99.1
WP_001061397.1\|2886788_2887586_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.4e-150	99.6
WP_044722835.1\|2887605_2887995_-	RusA family crossover junction endodeoxyribonuclease	K7PH72	Enterobacteria_phage	1.5e-66	96.1
WP_000210169.1\|2887991_2888318_-	LexA family transcriptional regulator	K7PLX6	Enterobacteria_phage	9.2e-54	100.0
WP_047089416.1\|2888314_2888968_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	6.2e-126	98.6
WP_016236627.1\|2888967_2889462_-	PerC family transcriptional regulator	U5P0U0	Shigella_phage	4.3e-87	97.6
WP_000104959.1\|2889458_2890400_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.9e-152	99.4
WP_001250269.1\|2890389_2890569_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515845.1\|2890744_2891296_-	protein YmfL	S5FXP0	Shigella_phage	3.4e-101	99.5
WP_001191674.1\|2891288_2891549_-	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_001020634.1\|2891646_2892339_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_000549623.1\|2892678_2892885_+	hypothetical protein	NA	NA	NA	NA
WP_000016389.1\|2892856_2893291_-	hypothetical protein	U5P096	Shigella_phage	8.4e-79	100.0
WP_021547451.1\|2893835_2894384_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	6.2e-95	96.0
WP_021547450.1\|2894427_2894673_+	phage excisionase	NA	NA	NA	NA
WP_074418785.1\|2894653_2895784_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	5.9e-124	62.1
WP_021547448.1\|2895773_2896634_-	DNA adenine methylase	NA	NA	NA	NA
2895839:2895853	attR	NA	NA	NA	NA
WP_021547447.1\|2896703_2898413_-	ATP-binding protein	NA	NA	NA	NA
WP_000444487.1\|2898581_2899832_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248691.1\|2900003_2900657_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|2900666_2901128_+	phosphatase NudJ	NA	NA	NA	NA
WP_001297484.1\|2901181_2902288_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3355848 : 3451345

Vibrio_phage(40.0%)

tail,transposase,protease,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161623753.1\|3355848_3356934_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_000832342.1\|3357589_3358159_-	hypothetical protein	NA	NA	NA	NA
WP_024238156.1\|3359706_3360027_-	hypothetical protein	NA	NA	NA	NA
WP_161623695.1\|3360033_3364227_-	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	3.3e-26	32.9
WP_000424924.1\|3364469_3364676_-	YbfA family protein	NA	NA	NA	NA
WP_001272653.1\|3364988_3365078_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_161623696.1\|3365077_3366751_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_000087939.1\|3366773_3368822_+	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	2.4e-27	23.0
WP_096129383.1\|3368830_3369403_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
WP_161623697.1\|3369395_3372080_+	two-component system sensor histidine kinase KdbD	A0A1V0SGX0	Hokovirus	6.5e-12	26.8
WP_000186109.1\|3372076_3372754_+	two-component system response regulator KdpE	W8CYM9	Bacillus_phage	6.8e-27	31.1
WP_001312672.1\|3373028_3373133_+	DUF2618 domain-containing protein	NA	NA	NA	NA
WP_016246951.1\|3373443_3375642_+	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_096129385.1\|3375638_3376958_+	putrescine-ornithine antiporter	NA	NA	NA	NA
WP_000856355.1\|3378774_3379269_-	hypothetical protein	NA	NA	NA	NA
WP_001295675.1\|3379482_3381123_-	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
WP_000848387.1\|3381148_3381694_-	replication initiation negative regulator SeqA	NA	NA	NA	NA
WP_000773304.1\|3381878_3382643_+	esterase	NA	NA	NA	NA
WP_000291238.1\|3382713_3383076_+	LexA regulated protein	NA	NA	NA	NA
WP_001018618.1\|3383215_3383746_+	flavodoxin FldA	NA	NA	NA	NA
WP_001406816.1\|3383955_3384042_+	fur leader peptide	NA	NA	NA	NA
WP_000131702.1\|3384034_3384481_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_000733572.1\|3384565_3384892_-	hypothetical protein	NA	NA	NA	NA
WP_096129432.1\|3384941_3386348_-	chitoporin	NA	NA	NA	NA
WP_137466630.1\|3386584_3387280_-	protein mom	A0A0C4UQZ7	Shigella_phage	7.5e-130	96.5
WP_001557410.1\|3387230_3387416_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	8.3e-20	71.0
WP_096129489.1\|3387580_3389398_-\|tail	phage tail protein	NA	NA	NA	NA
WP_096101152.1\|3389384_3389915_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	1.4e-67	68.8
WP_161623698.1\|3389929_3390739_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	2.7e-30	83.6
WP_065226821.1\|3390742_3391327_-	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	2.5e-49	49.2
WP_161623572.1\|3392279_3393851_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|3393870_3394218_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|3394217_3394895_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_096101100.1\|3395084_3395537_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	1.4e-20	40.7
WP_161623699.1\|3395533_3396070_-\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	7.1e-27	40.2
WP_096129346.1\|3396060_3397131_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.7e-88	46.9
WP_161623636.1\|3397130_3398405_-	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	1.2e-77	39.2
WP_161623700.1\|3398404_3400198_-\|tail	phage tail protein	M4MHE6	Vibrio_phage	1.0e-90	42.6
WP_096129348.1\|3400284_3400680_-	hypothetical protein	M4MB64	Vibrio_phage	2.8e-20	48.7
WP_032239558.1\|3400681_3401038_-\|tail	Mu phage tail tube protein GpM	NA	NA	NA	NA
WP_096129349.1\|3401047_3402523_-\|tail	phage tail protein	M1Q565	Vibrio_phage	4.6e-153	55.3
WP_096129350.1\|3402527_3402731_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_096129351.1\|3402711_3403323_-	hypothetical protein	M1PJ94	Vibrio_phage	6.2e-35	43.8
WP_053289376.1\|3403319_3403862_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.7e-58	63.1
WP_096129352.1\|3403861_3404299_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	2.2e-34	49.7
WP_001557428.1\|3404681_3405584_-	hypothetical protein	M4MB71	Vibrio_phage	2.1e-100	57.2
WP_096129354.1\|3405583_3406546_-	peptidase	M1Q578	Vibrio_phage	1.0e-76	46.0
WP_063269274.1\|3406759_3407524_-	hypothetical protein	M4M9M5	Vibrio_phage	2.4e-92	60.5
WP_063269273.1\|3407516_3409088_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	1.5e-157	57.5
WP_096129355.1\|3409084_3410611_-	hypothetical protein	M1NVQ0	Vibrio_phage	7.8e-196	67.9
WP_032084913.1\|3410616_3411198_-	DUF3486 family protein	M1PJ86	Vibrio_phage	3.8e-50	56.0
WP_000101558.1\|3411335_3411635_-	hypothetical protein	NA	NA	NA	NA
WP_024168521.1\|3411637_3411925_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.6e-25	60.6
WP_161623701.1\|3411930_3412236_-	DUF2730 family protein	M1Q558	Vibrio_phage	8.1e-12	38.5
WP_000128966.1\|3412220_3412448_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_096129488.1\|3412444_3413053_-	hypothetical protein	NA	NA	NA	NA
WP_096129487.1\|3413040_3413451_-	hypothetical protein	NA	NA	NA	NA
WP_096129486.1\|3413425_3413677_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	9.0e-25	67.6
WP_096129485.1\|3413678_3414275_-	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	1.7e-34	41.7
WP_096129484.1\|3414360_3414810_-	transcriptional regulator	A0A0C4UR27	Shigella_phage	1.5e-41	63.5
WP_079916120.1\|3415361_3415628_+	hypothetical protein	Q38493	Escherichia_phage	1.4e-15	52.3
WP_042856716.1\|3415566_3415881_-	hypothetical protein	A0A0C4UQY6	Shigella_phage	3.6e-31	70.7
WP_042856717.1\|3415873_3416056_-	hypothetical protein	NA	NA	NA	NA
WP_096129501.1\|3416048_3416588_-	hypothetical protein	A0A0C4UQU2	Shigella_phage	4.7e-87	85.8
WP_001107927.1\|3416686_3417211_-	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	1.4e-88	96.6
WP_000586546.1\|3417231_3417519_-	hypothetical protein	A0A0C4UQR4	Shigella_phage	2.4e-42	92.6
WP_096129512.1\|3417537_3417807_-	hypothetical protein	C9DGL5	Escherichia_phage	9.0e-23	60.7
WP_077627739.1\|3417839_3418064_-	hypothetical protein	C9DGL3	Escherichia_phage	3.4e-31	85.1
WP_001026712.1\|3418063_3419023_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	2.7e-130	77.2
WP_096129165.1\|3419061_3421062_-\|transposase	transposase	C9DGL1	Escherichia_phage	0.0e+00	92.4
WP_000985458.1\|3421064_3421283_-	transcriptional regulator	A0A0C4UQU0	Shigella_phage	5.4e-18	66.7
WP_079916135.1\|3421483_3421999_+	DNA-binding protein	A0A0C4UQZ2	Shigella_phage	1.9e-21	38.9
WP_001287154.1\|3422798_3424463_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	0.0e+00	99.1
WP_001023145.1\|3424730_3426677_-	PTS N-acetyl glucosamine transporter subunit IIABC	A0A2I7SAJ6	Vibrio_phage	1.6e-07	47.3
WP_001237072.1\|3427009_3427810_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_000271170.1\|3427869_3429018_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_032250170.1\|3429026_3430247_+	DNA-binding transcriptional regulator NagC	NA	NA	NA	NA
WP_000153129.1\|3430294_3431047_+	ribonucleotide monophosphatase NagD	NA	NA	NA	NA
WP_000337087.1\|3431443_3433108_+	asparagine synthase B	A9YVS6	Ostreococcus_tauri_virus	1.0e-84	39.1
WP_000184585.1\|3434343_3435519_-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	NA	NA	NA	NA
WP_000162733.1\|3435664_3437089_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_000490838.1\|3437202_3438282_+	PhoH family protein	A0A0S0MVD6	Pseudomonas_phage	4.3e-47	46.6
WP_000084469.1\|3438278_3438746_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_001278605.1\|3438835_3439714_+	CNNM family magnesium/cobalt transport protein CorC	NA	NA	NA	NA
WP_000853023.1\|3439738_3441277_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_001276770.1\|3441403_3443281_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_001177088.1\|3443735_3444644_+	glutamate/aspartate ABC transporter substrate-binding protein GltI	NA	NA	NA	NA
WP_000020941.1\|3444813_3445554_+	glutamate/aspartate ABC transporter permease GltJ	NA	NA	NA	NA
WP_000272824.1\|3445553_3446228_+	glutamate/aspartate ABC transporter permease GltK	NA	NA	NA	NA
WP_000631384.1\|3446227_3446953_+	glutamate/aspartate ABC transporter ATP binding protein GltL	G9BWD6	Planktothrix_phage	7.6e-32	38.6
WP_001207499.1\|3447070_3448006_+	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA
WP_001044880.1\|3448045_3448528_-	zinc ribbon-containing protein	NA	NA	NA	NA
WP_001487837.1\|3448762_3451345_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.1e-184	42.3

DBSCAN-SWA_11

3542100 : 3571520

Enterobacteria_phage(57.14%)

integrase,lysis,portal,transposase

attL 3562258:3562317|attR 3570136:3570903

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161623572.1\|3542100_3543672_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|3543691_3544039_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|3544038_3544716_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_161623703.1\|3544715_3545123_-	hypothetical protein	NA	NA	NA	NA
WP_161623704.1\|3545122_3547540_-\|portal	phage portal protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.8
WP_000453611.1\|3547514_3548060_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_032145128.1\|3548448_3548643_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.6e-26	95.2
WP_000738421.1\|3549003_3549297_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|3549387_3549570_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135277.1\|3549786_3550284_-	lysozyme	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_000839596.1\|3550283_3550499_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737275.1\|3551088_3552171_+	porin OmpD	Q1MVN1	Enterobacteria_phage	8.9e-154	76.3
WP_001204791.1\|3552359_3552743_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000971068.1\|3552828_3552969_-	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001297087.1\|3552965_3553328_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	6.2e-59	94.8
WP_000774478.1\|3553324_3553615_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.7e-48	94.8
WP_000224907.1\|3553607_3553778_-	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_001010744.1\|3553777_3554233_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.5e-62	69.5
WP_072186465.1\|3554229_3554331_-	hypothetical protein	NA	NA	NA	NA
WP_042815059.1\|3554427_3554934_-	hypothetical protein	NA	NA	NA	NA
WP_042815056.1\|3555172_3555496_-	hypothetical protein	NA	NA	NA	NA
WP_000709067.1\|3555607_3557134_-	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.7
WP_032139864.1\|3557191_3557299_-	hypothetical protein	NA	NA	NA	NA
WP_001070442.1\|3557390_3557723_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145900.1\|3557790_3558093_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_000788890.1\|3558089_3558791_-	Replication protein P	M1FJ72	Enterobacteria_phage	7.9e-127	97.4
WP_096129341.1\|3559803_3560343_-	regulator	M9NZI6	Enterobacteria_phage	4.0e-62	67.2
WP_001067458.1\|3560412_3560643_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000259990.1\|3560681_3561437_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
3562258:3562317	attL	NA	NA	NA	NA
WP_000233576.1\|3563706_3563913_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995419.1\|3563988_3564285_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.8e-48	98.0
WP_000100847.1\|3564290_3565076_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000611716.1\|3565072_3565753_+	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000149544.1\|3565749_3565932_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000548537.1\|3565904_3566096_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_001443983.1\|3566106_3566388_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763385.1\|3566486_3566705_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_000488407.1\|3566752_3567031_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000446905.1\|3567002_3567374_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_161623705.1\|3567229_3568393_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	1.5e-199	86.3
WP_000805428.1\|3568719_3569352_+	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_000729160.1\|3570653_3571520_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
3570136:3570903	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3787179 : 3866885

Stx2-converting_phage(37.5%)

holin,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000131044.1\|3787179_3789213_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
WP_001335745.1\|3789341_3789929_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_000089110.1\|3789942_3791415_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_001159094.1\|3791428_3793099_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
WP_001209100.1\|3793311_3793980_+	hypothetical protein	NA	NA	NA	NA
WP_000370307.1\|3794222_3794918_-	lactate utilization protein C	NA	NA	NA	NA
WP_000023927.1\|3794910_3796338_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_096129133.1\|3796348_3797068_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000339601.1\|3797595_3798450_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100035988.1\|3798675_3800001_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.5e-114	47.8
WP_000474077.1\|3800109_3800346_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001306921.1\|3800357_3800951_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_000621009.1\|3801540_3802392_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001285288.1\|3803638_3804742_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893260.1\|3804753_3806007_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
WP_001111347.1\|3806323_3806734_-	hypothetical protein	NA	NA	NA	NA
WP_000121328.1\|3806712_3807669_-	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA
WP_096129127.1\|3807678_3809877_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	5.6e-38	25.1
WP_032293878.1\|3809873_3810830_-	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA
WP_000070699.1\|3810826_3811516_-	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_001019917.1\|3811933_3812548_+	YagU family protein	NA	NA	NA	NA
WP_001303809.1\|3812795_3813125_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001296887.1\|3813437_3814148_-	hypothetical protein	NA	NA	NA	NA
WP_096129130.1\|3814116_3815760_-	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_089585283.1\|3815749_3818275_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000716398.1\|3818300_3818969_-	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_000730974.1\|3819026_3819614_-	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_161623714.1\|3820465_3821008_-	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_001147279.1\|3821830_3822058_+	hypothetical protein	NA	NA	NA	NA
WP_000866436.1\|3822092_3822233_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_000803998.1\|3822232_3822496_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000662258.1\|3822859_3822961_-	hypothetical protein	NA	NA	NA	NA
WP_096129132.1\|3824075_3828332_+	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_161623754.1\|3829111_3830122_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	4.5e-115	61.9
WP_000174677.1\|3830160_3830562_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189541.1\|3830619_3831864_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|3831955_3832414_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001293003.1\|3832674_3834132_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001295202.1\|3834488_3834755_-	hypothetical protein	NA	NA	NA	NA
WP_096129125.1\|3835061_3835514_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001226164.1\|3835510_3836566_-	DNA polymerase IV	NA	NA	NA	NA
WP_000207587.1\|3836636_3837422_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_096129124.1\|3837366_3839106_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000006260.1\|3839329_3839827_-\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_000009292.1\|3840002_3840761_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.1e-20	38.5
WP_001225679.1\|3841052_3841793_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333379.1\|3841763_3842531_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|3842736_3843315_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000973083.1\|3843554_3845999_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000532698.1\|3846041_3846515_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_096129123.1\|3846668_3847439_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_096129445.1\|3849339_3853593_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.4e-21	44.2
WP_001142958.1\|3856019_3856538_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_161623715.1\|3857235_3857736_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|3857770_3857995_+	hypothetical protein	NA	NA	NA	NA
WP_000056978.1\|3858045_3859521_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000611742.1\|3859527_3859941_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_161623572.1\|3861243_3862815_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|3862834_3863182_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|3863181_3863859_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_096101123.1\|3864269_3864947_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_000624622.1\|3864946_3865294_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_161623572.1\|3865313_3866885_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7

DBSCAN-SWA_13

4086081 : 4092327

Vibrio_phage(42.86%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137466630.1\|4086081_4086777_-	protein mom	A0A0C4UQZ7	Shigella_phage	7.5e-130	96.5
WP_001557410.1\|4086727_4086913_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	8.3e-20	71.0
WP_096129489.1\|4087077_4088895_-\|tail	phage tail protein	NA	NA	NA	NA
WP_096101152.1\|4088881_4089412_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	1.4e-67	68.8
WP_161623698.1\|4089426_4090236_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	2.7e-30	83.6
WP_065226821.1\|4090239_4090824_-	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	2.5e-49	49.2
WP_001557416.1\|4090796_4091885_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	1.3e-91	51.3
WP_096101100.1\|4091874_4092327_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	1.4e-20	40.7

DBSCAN-SWA_14

4702386 : 4768662

Vibrio_phage(41.67%)

tail,head,transposase,plate,integrase,tRNA

attL 4713805:4713819|attR 4769776:4769790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560983.1\|4702386_4702824_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_000920762.1\|4702820_4703693_-	virulence factor BrkB family protein	NA	NA	NA	NA
WP_001295269.1\|4703686_4704286_-	glucose-1-phosphatase	NA	NA	NA	NA
WP_000059678.1\|4704384_4705170_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	8.2e-24	30.9
WP_000621656.1\|4705203_4706100_-	sulfofructose kinase	NA	NA	NA	NA
WP_000718893.1\|4706267_4707164_+	sulfolactaldehyde 3-reductase	D2K0C8	Staphylococcus_phage	1.3e-60	90.7
WP_001046453.1\|4707187_4708066_+	sulfofructosephosphate aldolase	NA	NA	NA	NA
WP_000870916.1\|4708082_4709324_+	sulfoquinovose isomerase	NA	NA	NA	NA
WP_161623740.1\|4710562_4712599_+	sulfoquinovosidase	NA	NA	NA	NA
WP_000018380.1\|4712644_4714030_+	MFS transporter	NA	NA	NA	NA
4713805:4713819	attL	NA	NA	NA	NA
WP_096129170.1\|4714072_4715476_+	MFS transporter	NA	NA	NA	NA
WP_000723465.1\|4715543_4716236_+	porin OmpL	NA	NA	NA	NA
WP_000956313.1\|4716326_4717592_-	MFS transporter	NA	NA	NA	NA
WP_000256399.1\|4717693_4718674_-	TIM barrel protein	NA	NA	NA	NA
WP_000829798.1\|4718681_4719392_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_161623741.1\|4719609_4721433_-	ribosome-dependent GTPase TypA	NA	NA	NA	NA
WP_001271717.1\|4721805_4723215_+	glutamate--ammonia ligase	NA	NA	NA	NA
WP_000190577.1\|4723388_4724438_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	2.5e-07	26.1
WP_001188775.1\|4724449_4725859_+	nitrogen regulation protein NR(I)	Q56AR1	Bacillus_thuringiensis_phage	2.4e-05	28.7
WP_000893994.1\|4725970_4726081_+	YshB family small membrane protein	NA	NA	NA	NA
WP_000116090.1\|4726270_4727644_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_096129169.1\|4727832_4728342_-	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_000183349.1\|4728924_4729557_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_000250006.1\|4729938_4732725_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	1.7e-71	32.1
WP_000115994.1\|4732726_4732969_+	hypothetical protein	NA	NA	NA	NA
WP_001311257.1\|4733088_4734021_+	acyltransferase	NA	NA	NA	NA
WP_105447861.1\|4735451_4736159_-	protein mom	A0A0C4UQZ7	Shigella_phage	6.3e-132	98.3
WP_001372435.1\|4736109_4736295_-	Com family DNA-binding transcriptional regulator	A0A0C4UQS3	Shigella_phage	7.5e-21	72.6
WP_161623742.1\|4736459_4738277_-\|tail	phage tail protein	NA	NA	NA	NA
WP_161623633.1\|4738263_4738794_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	9.0e-67	68.2
WP_161623634.1\|4738808_4739618_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	1.0e-29	83.6
WP_065226821.1\|4739621_4740206_-	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	2.5e-49	49.2
WP_106844709.1\|4740178_4741267_-\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	2.2e-91	51.0
WP_096101100.1\|4741256_4741709_-	hypothetical protein	A0A2I7S9F0	Vibrio_phage	1.4e-20	40.7
WP_161623699.1\|4741705_4742242_-\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	7.1e-27	40.2
WP_096129346.1\|4742232_4743303_-\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.7e-88	46.9
WP_161623636.1\|4743302_4744577_-	multidrug DMT transporter	A0A2I7S9E8	Vibrio_phage	1.2e-77	39.2
WP_096129349.1\|4747283_4748759_-\|tail	phage tail protein	M1Q565	Vibrio_phage	4.6e-153	55.3
WP_096129350.1\|4748763_4748967_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_096129351.1\|4748947_4749559_-	hypothetical protein	M1PJ94	Vibrio_phage	6.2e-35	43.8
WP_053289376.1\|4749555_4750098_-	phage morphogenesis protein	A0A2I7S9D7	Vibrio_phage	2.7e-58	63.1
WP_161623743.1\|4750912_4751815_-\|head	phage head protein	M4MB71	Vibrio_phage	3.5e-95	56.2
WP_063269274.1\|4752989_4753754_-	hypothetical protein	M4M9M5	Vibrio_phage	2.4e-92	60.5
WP_063269273.1\|4753746_4755318_-	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	1.5e-157	57.5
WP_161623750.1\|4755314_4756841_-	hypothetical protein	M1NVQ0	Vibrio_phage	3.5e-196	67.9
WP_001557433.1\|4756846_4757428_-	DUF3486 family protein	M1PJ86	Vibrio_phage	6.4e-50	55.5
WP_000101558.1\|4757565_4757865_-	hypothetical protein	NA	NA	NA	NA
WP_024168521.1\|4757867_4758155_-	hypothetical protein	A0A0C4UR00	Shigella_phage	1.6e-25	60.6
WP_001397890.1\|4758160_4758466_-	DUF2730 family protein	M1Q558	Vibrio_phage	1.6e-12	39.6
WP_042856712.1\|4758450_4758678_-	conjugal transfer protein TraR	NA	NA	NA	NA
WP_130570126.1\|4758674_4759283_-	hypothetical protein	NA	NA	NA	NA
WP_001033674.1\|4759270_4759681_-	hypothetical protein	NA	NA	NA	NA
WP_001557440.1\|4759655_4759907_-	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.8e-25	68.9
WP_040100375.1\|4760590_4761040_-	Middle operon regulator	A0A0C4UR27	Shigella_phage	4.2e-41	62.7
WP_105269181.1\|4761036_4761588_-	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	3.2e-83	81.3
WP_001057678.1\|4761565_4761955_-	hypothetical protein	NA	NA	NA	NA
WP_000240903.1\|4761947_4762130_-	hypothetical protein	NA	NA	NA	NA
WP_161623744.1\|4762122_4762662_-	hypothetical protein	A0A0C4UQU2	Shigella_phage	7.2e-88	86.9
WP_032239583.1\|4763597_4764017_-	hypothetical protein	A0A0C4UR25	Shigella_phage	1.1e-67	89.2
WP_161623745.1\|4764037_4764307_-	hypothetical protein	C9DGL5	Escherichia_phage	2.4e-31	97.8
WP_077627739.1\|4764339_4764564_-	hypothetical protein	C9DGL3	Escherichia_phage	3.4e-31	85.1
WP_097333647.1\|4764580_4765519_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.4e-155	88.7
WP_063269192.1\|4765556_4767638_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	9.0e-179	50.7
WP_063269193.1\|4767640_4767892_-	DNA-binding protein	A0A2D1GNH1	Pseudomonas_phage	2.0e-16	54.2
WP_097333648.1\|4768056_4768662_+	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	1.1e-33	49.1
4769776:4769790	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041426

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041426_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041426_1

82625-82799

Orphan

Consensus_repeat	Method
GTATGCTGTCAGCGGTAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041426_1

>merge|NZ_CP041426|1|82625-82799|PILER-CR
GTATGCTGCCAGCGGTAATTTTGTTCTGGTTATACCCATACCGGGACACATTATTCATGCAATGTCTTAAGTATGCTGTCAGCGGTAAAAAATCGAGTAAAGTATGCTGTGAGCGGTGAGATAGACTCTCGATATGCTATCAGCGGTAGTTGATTGTGTATGCTGTCAGCGGTGA

>NZ_CP041426|1|1|82625-82799|PILER-CR
GTATGCTGCCAGCGGTAA	TTTTGTTCTGGTTATACCCATACCGGGACACATTATTCATGCAATGTCTTAA
GTATGCTGTCAGCGGTAA	AAAATCGAGTAAAGTATGCTGTGAGCGGTGAGATAGACTCTCGATATGCTATCAGCGGTAGTTGATTGT
GTATGCTGTCAGCGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041426.1\|WP_023135695.1\|83388_83568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_161623776.1\|75985_76729_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_001404451.1\|76718_78635_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP041426.1\|WP_161623783.1\|93444_95784_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|223544
NZ_CP041426.1\|WP_000037962.1\|75406_75976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_001348683.1\|81050_82265_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_022644976.1\|69546_70650_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|376313
NZ_CP041426.1\|WP_001711109.1\|93153_93354_-\|membrane-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_000122502.1\|71768_72911_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP041426.1\|WP_032187690.1\|84763_87781_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP041426.1\|WP_161623778.1\|88968_90297_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341135
NZ_CP041426.1\|WP_106735854.1\|87795_88959_-\|DUF4268-domain-containing-protein	unknown	unknown	gnl\|CDD\|379461
NZ_CP041426.1\|WP_032252468.1\|83056_83392_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_161623777.1\|78864_79950_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_CP041426.1\|WP_001011859.1\|70821_71691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366679
NZ_CP041426.1\|WP_000364573.1\|80204_80849_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_161623779.1\|90296_92726_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP041426.1\|WP_001229345.1\|82844_83057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041426.1\|WP_000623685.1\|73017_75333_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP041426.1\|WP_023135696.1\|83607_83883_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041426.1\|WP_001404451.1\|76718_78635_-\|AAA-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.78714e-32
NZ_CP041426.1\|WP_001011859.1\|70821_71691_-\|hypothetical-protein	gnl\|CDD\|366679	pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase. This enzyme catalyzes the second step in the histidine biosynthetic pathway.	1.44285e-10
NZ_CP041426.1\|WP_161623778.1\|88968_90297_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	4.63526e-43
NZ_CP041426.1\|WP_022644976.1\|69546_70650_-\|thymidylate-synthase	gnl\|CDD\|376313	pfam00303, Thymidylat_synt, Thymidylate synthase. This is a family of proteins that are flavin-dependent thymidylate synthases.	2.27938e-92
NZ_CP041426.1\|WP_161623779.1\|90296_92726_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	3.53006e-79
NZ_CP041426.1\|WP_161623783.1\|93444_95784_-\|recombinase-RecA	gnl\|CDD\|223544	COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair].	2.6933e-47
NZ_CP041426.1\|WP_000122502.1\|71768_72911_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP041426.1\|WP_032187690.1\|84763_87781_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.98086e-155
NZ_CP041426.1\|WP_000623685.1\|73017_75333_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP041426.1\|WP_161623777.1\|78864_79950_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	1.6102e-28
NZ_CP041426.1\|WP_106735854.1\|87795_88959_-\|DUF4268-domain-containing-protein	gnl\|CDD\|379461	pfam14088, DUF4268, Domain of unknown function (DUF4268). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 151 and 387 amino acids in length.	6.93392e-42

>NZ_CP041426.1|WP_001348683.1|81050_82265_+|RepB-family-plasmid-replication-initiator-protein
MLSAVIDSLSAVHRMLPTVFGILSAANQVCCQRLNDKGVHMSTKNKKGKNNKEVEDNIDNFEEGSLELYTGELVPNSNNTVQPIALMRLGLFVPTLKGTKYSKRNKPNEIDASKELVQLEVARSEGYSDIKITGPRLDMDHDFKTWVGVVRSLAEYGEPNGRVELSITKFAKFCGYPSSQIRKTLRDRLTNSLLKIMRTTLSFQRTYEEKNVDGSNKISLLMVHLINSVDYNEQKDTVVFYAEPKLAELYRFDHKVLLQLKVINKLPRKETAQALYTFIESLPTKPAPVSLARLRARLNLSSRNVSSQNQTIRNGLKALQDLGYLEYSEIKRGRSIYIQIHSRNPKLKVAPPKPEDIEPKKPDEKAGEIDAKQNIINKITELSQNLTPENIKMIEILSNSLKLL
>NZ_CP041426.1|WP_000364573.1|80204_80849_-|hypothetical-protein
MDLKRTRWVRRLEDGSYTIESNSNLNKQKLLCDICGIAAKCPIYETRIKLDKAGVNFHLNSCIRYVPLLAFRKPIIGLDAPYFNTLRSGVTWRDRLSPDKLICLVSADTGKIIRFGKVDKVYSGPVDEMLRKHSRFNHLCMGGEKIEKVEEVIRKSYGHFLTKDSLLTAIYIRHVKREFDLEYHSEEELNLVDPRPKAGVISINAARKKPTDAL
>NZ_CP041426.1|WP_161623777.1|78864_79950_-|exonuclease-SbcCD-subunit-D
MTLPYGVISDCHYHKWDAFSTTNAEGLNSRLEIQLEATKEAAIAMKKAGCKYMLVAGDTFHVRGTVSPSVLHYVTETYKRIINELDLTVVMLAGNHDLETNDSVYSANAAASLSSIGVVIVCGKRPHSIKIGDVTVHLISWRNNHAELISDLKALRKSVEGDNHDVVIHTSINKAIPTMPDVGIDAQELKDIGFRLVLSGHYHNHKEVIPGVISVGALTHQNWGDVGSLAGYMIVNPDGSFSHYETSAPKFINLEDYVADDQIRGNYVRFRAVIENDEEGIKYQNILKTMGAKGVVCNFIRKSSMMEGTASTTETSKIDSLGESVSAYCKIVHDTDGGFDLSKLDILCQEILTEAESSEAV
>NZ_CP041426.1|WP_001404451.1|76718_78635_-|AAA-family-ATPase
MKFLKLQVENFMAIASAEVELDQRGLVLIQGVNSDDSSASSNGSGKSTLMNSLMWCLYGETAHGVKGDDVLSTDHEKNCRVAVTIEDEGKRYAIIRHRKHKEFKNRLIVRGEDGDMTKGKDALTQEFVERLIGASKEVFMASIYASQEAMPDLPGMSDKNLKTIVEEAAGVDRLTRAYAIARERANAAAARMDVVKTKLESTISTIEATQSEIESAKASSESWEQERSKRYDDALAGLASAEVELTEVELEIRTLPEQIRDTEKAIESERKKLASKEEHDAKLLKVRGAITDIRASIKATENSQADAMSRARNFKTKAEEVGTKVGSPCPTCGKAYCEEDLSTVKENFIEQARQEIGQAKTLAEAMAKHKTNLEKALSIESALVKTTPDVTAIIARIEELTKQLSSLRHREKEVVAIESLVTRARTEVDRISKEINPFIALIARHEDNLVSSKSTFKSLKDELKAIQEQTLLLEKARQVYSPAGVRSHILTSVTPFLNTRTAEYLNTLSDGNITAEWSTMDVTKKGEYRDKFNISVQKKGSSKSFQTLSGGEKRKVRIACSLALQDLVSNRASKNIDLFIGDEIDDALDTAGLERLMGILESKARERGTVLIISHKEMKSWFRETITLEVKEGRSYVV
>NZ_CP041426.1|WP_161623776.1|75985_76729_-|hypothetical-protein
MSFKLSRSQFLQVFAVMQSIKLINGHTSNGAAPRILWGSNNIDGVQFAALLGLISETPLMQSLKSLPPGCIAPILINPFVEGGYLPNVGPGFIASHETEDLNINSEGFFGGMGAHHCMAFTNLIRLANKRVDSLASPGVAFTGFLIQRRDKKYSADKLQFVGKYGEMVEIELQLPHVLANDSADSRRLLGIMRHFIASGVKHAADKRVTQENEYSDFANYPQPTLQTAIVANSLEARLLENPIWGTW
>NZ_CP041426.1|WP_000037962.1|75406_75976_-|hypothetical-protein
MSKKISVVGVDPSMSNFGLAVGTLDLETDELEIHGLTLVETKAGSNKKTVRVNSDDLRRASEIWRVAKPIIDKANMVFCELPVGSQNSRSQTSYGICIGVLACVDKPLIQVTPNEIKHFVGNKLTTSKEEIIQWATKKHPKAPWLRRKQSGQDVLVNKNEHLADAVAAIHTGMQTDQFRQVRDVLKSLI
>NZ_CP041426.1|WP_000623685.1|73017_75333_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALVKSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPNFYQHIVKNVNKGVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHIYMLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLIESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTAVKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLVRSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRKKSVPAIELFSSLMQERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTLSAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYLAKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYRSSLDESGETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRGPVSVKSSKDGIVKMVVPEFEKLKEQYEYLWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKTLYYHNTRDGAGKRDDDEPQNPLAQAVAVEPEDECDGACKI
>NZ_CP041426.1|WP_000122502.1|71768_72911_-|ribonucleotide-diphosphate-reductase-subunit-beta
MSYSTFRLGANDATKEPMFLGQSVNVARYDQQKYRDFEKLIERQLSFFWRPEEVDISSDRIDFNTKLRDHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMTCERQSLGEKEFERLYVNEYGWEPYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAEQEMNWADYLFKDGSMIGLNADILKTYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNKWLLTDTLQIAPQEAEQSTYLVGQIDSTVDKASLSQFADL
>NZ_CP041426.1|WP_001011859.1|70821_71691_-|hypothetical-protein
MNFTKLTDHLKLATDRLIGFKPEPYELHEGHGVATESIYKMVDQFHELFQHPRRVMPTPELLRLRASLIHEEAVVEGIPAAMNGDIEQLLDAMADFLYVGVGTMVAIKGGISTGMTYYTQEQSIDRFMQTIFVPGNTVFDDMAMPFQEAREASCMLEELADKLEKKTVKDSELIQELRRVMNKIYVACMMTYRLADFLGINVVELVGEIHRSNMTKLWPADAEERRHAVANCKYDSSDLGFRHADGTDKMIGFRISDGKILKSPTYSDVDLSSFVEQAKASAMYGMIKK
>NZ_CP041426.1|WP_022644976.1|69546_70650_-|thymidylate-synthase
MSLLLNREHTNGQVTNASYAKVIETVLKSGVQADDRTGTGTLSTCYVPSYYMLTGGTVPLISGKAVNLKPLLVELEWYLKGTGNIQFLKDNGVKIWDAWADENGDLGPVYGKQWRRWEDTRIVSHSEYLSKIATFRERGYKVEGYLGISEDRVVLSREIDQLQRIVDTLRTNPTDRRIMLNAWNVGELEDMKLPPCHFVFSLWSRELDFETRLTMATDIGLQHSRLGYESIYTKMLYDLEIDGSVTEAELDELGIPKRILNSCLVQRSVDTFVGMPFNIAGYGILTHFLAKITGHMAGAFVHFGFDVHLYNNHMEGVCELMQRQAPEHSDPVVIFPNEWSELDDFKWDEILILGYAPLPWIKVPVAV
>NZ_CP041426.1|WP_001229345.1|82844_83057_-|hypothetical-protein
MALTLAGLEIEKTSGYWRAKGFKQPGILERLEREDGYIVHQRREWRMYDPETGKLTTKAGTLWGLLKKIH
>NZ_CP041426.1|WP_032252468.1|83056_83392_-|hypothetical-protein
MKKTALVLALLTLPVFADTHVYECEMFVVEAKNGLIRNAVKANYGAMVVDRGEQFYVVRDDRVLSSPFLTKRNGELSGVGKDRFVYNKSGDVYGVHAKNDSYLFDDCKEVG
>NZ_CP041426.1|WP_023135695.1|83388_83568_-|hypothetical-protein
MKILLDITLLIISIAFVLDCIFTGAIRKALAPVNDVMINALAVVLVFDSALGVFKGVVA
>NZ_CP041426.1|WP_023135696.1|83607_83883_-|hypothetical-protein
MKTLVRISSSTDYDVYPLFMIKCDGLNDEEIQAAIERNLVEYTGMDADSIYIDDDGVCWHNGSCWYVDDTMLVSDEDAAHLERILGISTFE
>NZ_CP041426.1|WP_032187690.1|84763_87781_-|type-I-restriction-endonuclease-subunit-R
MVSQTNEQALESAIEKCLAGISTEELKEGLSQQSLGAGYFIGAASDFNMQYAIDERFFWQFLQKTQEVELAKLQKNNPSDWQRKLLERFDRLIKKHGILHLLKKGLSVDDAHFNLLYPAPLASSSEKVKQNFADNVFSCTRQVRYSMVNPLQEIDMVLFINGIPLITLELKNAWTGQTARYHGQKQYRDDRDATQPLLTFGRCLVHMAVDTDEVYMTTKLSGSSTFFLPFNKGHNLGQGNPPNPSGHKTAYLWQEVFTKDSLANIIQHFVRLDGSSKDPLPKRTLFFPRYHQLDVVRKLVDHAAQHGVGQTYLIQHSAGSGKSNSITWAAYQLIETYPASSDVAGGKSLEQPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIIAPANKSSELKQALENGKKIIITTIQKFPFIIDGIADLSDKRFAVIIDEAHSSQSGSAHDNMNRAMGKSEVEEAEDAQDKILQAMRSRKMRGNASYLAFTATPKNSTLEKFGQRQEDGSYKPFHLYSMKQAIEEGFILDVLANYTTYKSYYEIEKSIADNPEFDTKKAQKKLRAYVERSQQTIDIKAEIMLEHFVPHVVNTKKLKGKGKGMVVTQNIEAAIRYYKAIRRILEEQGNPFKVAIAFSGTKEVDGIEYTEADINGFAESDTKDMFDTDEYRLLVVANKYLTGFDQPKLCAMYVDKKLASVLCVQALSRLNRSAPKLGKKTEDLFILDFFNSVEDIQSAFDPFYTATSLSQATDINVLHELKDEMDDVGVYEWYEVEDFVTRYFKNEDAQTLSPIIDIAAARFDHELDLEAEAKVDFKIKAKQFVKIYGQMASIMPYEMVSWEKLFWFLKFLIPKLKVEDPDADAIDELLDSVDLSSYGLQRVKLNHSIKLSDQEAELDPQNPNPRGVHGGEKETDPLDEIIRTFNERWFQGWSATPEEQKVKFVNIAESIRNHPDFESKYKNNPDPHNRNLAFEKMLKEIMLQRRKDELELYKLFAGDSAFKASWTQSMQRMVGR
>NZ_CP041426.1|WP_106735854.1|87795_88959_-|DUF4268-domain-containing-protein
MFTVNHQANRISPVKTKRFSELGFTERKNLQEWLAHEPSALGEELLIIQKEFDGFDDTRERLDLLALDKDGNLVIIENKLDDSGRDVVWQALKYASYCASLTKAQIVEIYQQYLDRYEPVTGEVDLFNTPASASARICEFLDAPDLDELKLNLGNSQRIMLVAANFRKEVTSTALWLLGQGISIACFKITPYSLGEQLLINIDQIIPTPEAKELMIGINAKEAEEKTTEVVLKNRHTVRREYWERALEAFQKSSCQLYNNISPSKDHWLSAGSGLSGCPYNLIFLQKELRVELWISRGVTEENKYLFDLLSQSKQDIEHTFGAELEWMRLDEKKSCRIQFSTKADGFNKETWPQAVAWHLEQMTKLEKALKGPLQKAAEAMKQKNFD
>NZ_CP041426.1|WP_161623778.1|88968_90297_-|restriction-endonuclease-subunit-S
MERLALMPKYEDYVDSGVEWLGDLPSHWDAVKMKFLFKDTSMKNKPNETLLSVTQSQGVVPREWVENRMVMPSGNLESFKFIAKGDFAISLRSFEGGLEYCHHDGIISPAYTVLKTKKDYLLAGYYKYLFKSQTFISELQTSIVGIREGKNISYEELQYSLLPIPAEEEQTRIANFLDKKTALIDEAISLKEQQISLLKERKQIIIQQAVTQGLDPNVPMKDSGVDWIGDIPAHWGCTAVKRLLDIPITDGPHTTPQLHDEGIPFISAEAIKGGEINFDKKRGYINEKDYLLFSNKYTPKVNDIYMVKSGATTGRVAIVRTEMKFTIWSPLAVFRVDKNKLNPLYLYYFLQSYSFLKGVELSWSFGTQQNIGMGVLGNLFALAPPLEEQQLIVNSIEPHFREIDIASEQVYQQIEKLKEYKTTLINSAVTGKIKITPEMVEQ
>NZ_CP041426.1|WP_161623779.1|90296_92726_-|SAM-dependent-DNA-methyltransferase
MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKEQLPLTMTVYDPACGSGGMLTESQNFIEEKYPNDSRDIYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKYIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITEITDTYLACKDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAIAPLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKNAILHAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYSVPSAEGGKKGEYITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGVKVAEAQGEA
>NZ_CP041426.1|WP_001711109.1|93153_93354_-|membrane-protein
MIKLYLMAVATGISVVFIYCLLVPSLISAKSDIAVMLGIIVAFGAPVIGFNVGRNFLKSLINSKGK
>NZ_CP041426.1|WP_161623783.1|93444_95784_-|recombinase-RecA
MAKGKSALALALKKKIGSNDEIQKVTHWIDTGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKCVTADTMLLTERGMVTVKELFEIEGHKATCTTRDVEHNVGLINENGVIEKTSHLTCNNRRKFKRIKLASGGYIEATFRHPIRVVDDLGNIVWRYAEKISVGDTIPSMVGTHQFGDQHLDANIAKLMGYLIADGYVASENSVHFSNTDPFIKDEYYRLISLVSDKMPVTRKHNGSEDHMLFSKEVRSLLFKEYGLEYEKAAGKQVPLSVRRANSEAQIAFLRGYFELECHVNDGRCIEVVSASGLLLQQIRLMLLNLGITSTISEKHVAGYENTYYRLSFSGSNYDLFLSTIGFESPARLSVATKRDIGFDRTYSGYVPHISGLVKSLYESLTKTTREDYALVDHVIGRGDRVGIDKLREIYVSFIGRKNRFNEHLFAQLAAVIGSNLFYDEVVAIEEGEAPTFDVAMPETHSFWSNGIISHNTFLATAAMISAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPESAPICIVADSLASMVPNSKAEKFEKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRIRLGASVMKDGKEKIGQDVGAECIKNKVAPPYGKCTWKFYFDPTRGLDVVESLVEYMLEEGYLPKSASGRVEIGEKKYTKSQIVEMYREKPLAEIIAALQAIDDRREKTSPTDELED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP015915	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence	75929-75980	0	1.0
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1473-1524	0	1.0
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	82643-82694	0	1.0
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP022167	Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence	1473-1524	0	1.0
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_KY515225	Escherichia coli strain 244 plasmid AnCo2, complete sequence	18820-18871	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP050499	Escherichia coli strain RM13322 plasmid pRM13322, complete sequence	69808-69859	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP024271	Escherichia coli strain F8111-1SC3 plasmid unnamed2	75091-75142	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP041423	Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence	18343-18394	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	7833-7884	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP053753	Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence	75450-75501	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP024264	Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1	36034-36085	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP031136	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence	104450-104501	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	37107-37158	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_KY515224	Escherichia coli strain 243 plasmid AnCo1, complete sequence	106949-107000	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	2684-2735	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1693-1744	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP022461	Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence	21469-21520	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	MK125034	Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence	1693-1744	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	MK125035	Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence	1693-1744	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP027358	Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence	53858-53909	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	62158-62209	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP010153	Escherichia coli strain D9 plasmid A, complete genome	71603-71654	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP025888	Escherichia coli strain 503046 plasmid p503046_111, complete sequence	1474-1525	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	83052-83103	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP010144	Escherichia coli strain D4 plasmid A, complete genome	71681-71732	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	83837-83888	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	94584-94635	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP045933	Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP041451	Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	96919-96970	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP014490	Escherichia coli strain G749 plasmid pG749_2, complete sequence	85749-85800	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NC_023916	Escherichia coli H89 plasmid pECOH89, complete sequence	1693-1744	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_LR213459	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	MF554642	uncultured bacterium clone AA-105 plasmid pTIC, complete sequence	31095-31146	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP054387	Escherichia phage CMS-2020a, complete genome	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP053388	Escherichia phage CMS-2020a, complete sequence	1473-1524	1	0.981
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	64261-64312	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	137199-137250	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	63380-63431	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	86948-86999	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	28916-28967	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	635-686	2	0.962
NZ_CP041426_1	1.1\|82643\|52\|NZ_CP041426\|PILER-CR	82643-82694	52	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	70429-70480	2	0.962
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP050499	Escherichia coli strain RM13322 plasmid pRM13322, complete sequence	69721-69789	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	2754-2822	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP022461	Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence	21539-21607	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP045191	Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP041426	Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence	82713-82781	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP027358	Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence	53928-53996	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP041423	Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence	18256-18324	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	7746-7814	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP053753	Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence	75363-75431	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NC_018651	Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence	62228-62296	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP010153	Escherichia coli strain D9 plasmid A, complete genome	71673-71741	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP025888	Escherichia coli strain 503046 plasmid p503046_111, complete sequence	1544-1612	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP022167	Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP027369	Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence	83122-83190	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP010144	Escherichia coli strain D4 plasmid A, complete genome	71751-71819	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	94654-94722	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP045933	Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP015915	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence	75842-75910	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	96989-97057	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_LR213459	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP054387	Escherichia phage CMS-2020a, complete genome	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP053388	Escherichia phage CMS-2020a, complete sequence	1543-1611	9	0.87
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	64174-64242	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	87018-87086	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	28986-29054	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	1763-1831	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP024271	Escherichia coli strain F8111-1SC3 plasmid unnamed2	75004-75072	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	705-773	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	1543-1611	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	70499-70567	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP024264	Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1	35947-36015	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	137112-137180	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	83908-83976	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP031136	Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence	104363-104431	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP041451	Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence	1543-1611	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP034165	Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence	37020-37088	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	63294-63362	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	MF554642	uncultured bacterium clone AA-105 plasmid pTIC, complete sequence	31165-31233	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	MK125034	Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence	1763-1831	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	MK125035	Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence	1763-1831	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_CP014490	Escherichia coli strain G749 plasmid pG749_2, complete sequence	85819-85887	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NC_023916	Escherichia coli H89 plasmid pECOH89, complete sequence	1763-1831	10	0.855
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_KY515225	Escherichia coli strain 244 plasmid AnCo2, complete sequence	18733-18801	11	0.841
NZ_CP041426_1	1.2\|82713\|69\|NZ_CP041426\|PILER-CR	82713-82781	69	NZ_KY515224	Escherichia coli strain 243 plasmid AnCo1, complete sequence	106862-106930	11	0.841

1. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

2. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

3. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

4. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 0, identity: 1.0

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	Protospacer
****************************************************

5. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

6. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

7. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

8. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

9. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

10. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

11. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

12. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

13. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

14. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

15. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

16. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

17. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

18. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

19. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

20. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

21. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

22. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

23. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

24. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

25. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

26. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

27. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

28. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

29. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

30. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

31. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

32. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

33. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

34. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

35. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

36. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

37. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgtcttaa	Protospacer
************************** *************************

38. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 1, identity: 0.981

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgggacacattattcatgcaatttcttaa	Protospacer
********************************************* ******

39. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

40. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

41. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccggtacacattattcatgcaatgccttaa	Protospacer
************************** *******************.*****

42. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

43. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

44. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttatacccataccgatacacattattcatgcaatgtcttaa	Protospacer
*************************. *************************

45. spacer 1.1|82643|52|NZ_CP041426|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 2, identity: 0.962

ttttgttctggttatacccataccgggacacattattcatgcaatgtcttaa	CRISPR spacer
ttttgttctggttataccaataccggtacacattattcatgcaatgtcttaa	Protospacer
****************** ******* *************************

46. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP050499 (Escherichia coli strain RM13322 plasmid pRM13322, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

47. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

48. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP022461 (Shigella sonnei strain 2015C-3807 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

49. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP045191 (Escherichia coli strain NT1F31 plasmid pNT1F31-113kb, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

50. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP045278 (Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

51. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP041426 (Escherichia coli strain STEC388 plasmid pSTEC388_1, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

52. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP027358 (Escherichia coli strain 2013C-4991 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

53. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP041423 (Escherichia coli strain STEC409 plasmid pSTEC409_1, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

54. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

55. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP053753 (Shigella sonnei strain 506 plasmid pMHMC-002, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

56. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NC_018651 (Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

57. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP010153 (Escherichia coli strain D9 plasmid A, complete genome) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

58. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP025888 (Escherichia coli strain 503046 plasmid p503046_111, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

59. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP022167 (Escherichia coli strain M160133 plasmid pM160133_p3, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

60. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP027369 (Escherichia coli strain 2014C-3307 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

61. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP010144 (Escherichia coli strain D4 plasmid A, complete genome) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

62. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

63. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP045933 (Shigella sonnei strain AUSMDU00010534 plasmid pAUSMDU00010534_01, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

64. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP015915 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy3, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

65. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP022085 (Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

66. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_LR213459 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 2) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

67. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP054387 (Escherichia phage CMS-2020a, complete genome) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

68. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP053388 (Escherichia phage CMS-2020a, complete sequence) position: , mismatch: 9, identity: 0.87

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
************************************************************

69. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

70. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

71. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

72. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

73. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP024271 (Escherichia coli strain F8111-1SC3 plasmid unnamed2) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgatatagactctcgatatgctatcagcggta	Protospacer
******************************* ****************************

74. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

75. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

76. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

77. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP024264 (Escherichia coli O169:H41 strain F6326-C1 plasmid unnamed1) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

78. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

79. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

80. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP031136 (Escherichia coli strain CFSAN064035 plasmid pGMI17-003_2, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
agaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
*.**********************************************************

81. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP041451 (Escherichia coli strain YPE3 plasmid pYPE3-114k, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

82. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP034165 (Escherichia albertii strain 2014C-4015 plasmid p2014C-4015-1, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaaacgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	Protospacer
**** *******************************************************

83. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

84. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to MF554642 (uncultured bacterium clone AA-105 plasmid pTIC, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggca	Protospacer
**********************************************************.*

85. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to MK125034 (Escherichia coli O25b:H4-ST131 plasmid p7.2.1, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

86. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to MK125035 (Escherichia coli O25b:H4-ST131 plasmid pB20 clone ST131-Rx_O25b:fimH30, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

87. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_CP014490 (Escherichia coli strain G749 plasmid pG749_2, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

88. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NC_023916 (Escherichia coli H89 plasmid pECOH89, complete sequence) position: , mismatch: 10, identity: 0.855

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgagcggtgagataaactctcgatatgctatcagcggta	Protospacer
***********************************.************************

89. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_KY515225 (Escherichia coli strain 244 plasmid AnCo2, complete sequence) position: , mismatch: 11, identity: 0.841

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgggcggtgatatagactctcgatatgctatcagcggta	Protospacer
***********************.******* ****************************

90. spacer 1.2|82713|69|NZ_CP041426|PILER-CR matches to NZ_KY515224 (Escherichia coli strain 243 plasmid AnCo1, complete sequence) position: , mismatch: 11, identity: 0.841

aaaatcgagtaaagtatgctgtgagcggtgagatagactctcgatatgctatcagcggta	CRISPR spacer
aaaatcgagtaaagtatgctgtgggcggtgatatagactctcgatatgctatcagcggta	Protospacer
***********************.******* ****************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2761 : 104525

105

Salmonella_phage(90.11%)

tRNA,transposase,capsid,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161623756.1\|2761_3931_+	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	1.7e-206	92.2
WP_000627054.1\|4056_4488_+	hypothetical protein	J9Q6I8	Salmonella_phage	1.5e-64	86.7
WP_000047683.1\|4605_5634_+	hypothetical protein	J9Q7Z3	Salmonella_phage	4.8e-141	84.6
WP_161623726.1\|6079_7102_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.4
WP_161623727.1\|7101_7881_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
WP_161623757.1\|7924_9274_-	AAA family ATPase	J9Q7G4	Salmonella_phage	2.1e-232	93.0
WP_096127582.1\|9317_10058_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.1e-126	89.2
WP_000342417.1\|10342_11110_+	hypothetical protein	NA	NA	NA	NA
WP_160378290.1\|11162_11516_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_000161228.1\|11521_12190_-	AAA family ATPase	J9Q7R7	Salmonella_phage	1.7e-110	91.4
WP_001711191.1\|12509_12779_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_000072677.1\|12786_13308_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_161623758.1\|13476_13728_-	hypothetical protein	J9Q7R6	Salmonella_phage	5.3e-25	76.8
WP_161623759.1\|13729_14422_-	hypothetical protein	J9Q7Y7	Salmonella_phage	9.5e-125	94.3
WP_000064175.1\|14435_14759_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.9e-44	88.8
WP_096127586.1\|15129_16170_-\|tail	phage tail protein	NA	NA	NA	NA
WP_161623760.1\|17100_20790_-\|tail	phage tail protein	J9Q713	Salmonella_phage	0.0e+00	69.0
WP_001293195.1\|20807_21401_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	2.0e-99	90.9
WP_097497806.1\|21388_22186_-\|tail	phage tail protein	J9Q7R4	Salmonella_phage	2.9e-154	93.6
WP_000511446.1\|22178_22877_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	5.1e-134	97.0
WP_000442113.1\|22959_23295_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	3.0e-52	86.4
WP_161623761.1\|23337_27867_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	66.0
WP_000952686.1\|27874_28099_-	hypothetical protein	J9Q7F7	Salmonella_phage	8.8e-32	94.6
WP_000163861.1\|28224_28542_-	hypothetical protein	J9Q7R3	Salmonella_phage	8.6e-49	96.2
WP_000072377.1\|28597_29344_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	2.8e-122	93.5
WP_000469440.1\|29418_29802_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.2e-57	82.7
WP_000523628.1\|29803_30277_-	hypothetical protein	J9Q711	Salmonella_phage	3.3e-76	90.4
WP_001027663.1\|30267_30612_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.3e-55	95.6
WP_000057118.1\|30691_31525_-	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-141	92.1
WP_000801185.1\|31524_31959_-	hypothetical protein	J9Q7Y3	Salmonella_phage	1.1e-59	82.6
WP_161623762.1\|32003_32924_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.7e-132	83.6
WP_161623763.1\|32997_33873_-\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	1.5e-154	94.5
WP_072328019.1\|33898_34786_-	hypothetical protein	J9Q7F4	Salmonella_phage	2.1e-132	88.9
WP_161623764.1\|34807_36382_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	1.4e-285	92.7
WP_001007301.1\|36408_37665_-	hypothetical protein	J9Q7Y2	Salmonella_phage	7.5e-245	96.7
WP_000215413.1\|37664_38297_-	hypothetical protein	J9Q6D4	Salmonella_phage	1.8e-90	83.8
WP_000176292.1\|38493_38760_-	hypothetical protein	J9Q757	Salmonella_phage	1.4e-36	88.6
WP_000129633.1\|38769_39660_-	hypothetical protein	J9Q7I6	Salmonella_phage	2.6e-167	98.6
WP_001717191.1\|39656_40322_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.8e-110	98.6
WP_000161986.1\|40318_40987_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	5.6e-106	89.6
WP_021547990.1\|40986_41667_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	4.6e-108	87.6
WP_161623765.1\|41749_43309_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	8.3e-278	92.3
WP_001291061.1\|43311_43590_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.6e-22	58.2
WP_001308871.1\|43622_44222_+	hypothetical protein	NA	NA	NA	NA
WP_161623766.1\|44362_44911_+	hypothetical protein	NA	NA	NA	NA
WP_161623767.1\|44938_45358_+	hypothetical protein	J9Q806	Salmonella_phage	1.4e-38	58.8
WP_032083927.1\|45362_45887_+	transcriptional regulator	J9Q6L0	Salmonella_phage	1.5e-66	79.1
WP_161623768.1\|46262_46649_+	hypothetical protein	NA	NA	NA	NA
WP_161623769.1\|46843_47494_+	hypothetical protein	J9Q754	Salmonella_phage	6.4e-99	83.8
WP_161623770.1\|47542_47746_+	hypothetical protein	J9Q7I3	Salmonella_phage	2.7e-27	92.5
WP_161623771.1\|48613_49096_-	hypothetical protein	J9Q805	Salmonella_phage	2.3e-61	69.8
WP_048948307.1\|49446_49857_-	hypothetical protein	NA	NA	NA	NA
WP_161623772.1\|49938_50334_-	hypothetical protein	J9Q7I1	Salmonella_phage	5.4e-32	54.6
WP_000749406.1\|50459_50771_-	hypothetical protein	J9Q7T7	Salmonella_phage	3.3e-29	64.1
WP_001755489.1\|50925_51255_-	hypothetical protein	NA	NA	NA	NA
WP_032252448.1\|52831_53230_-	hypothetical protein	NA	NA	NA	NA
WP_032252493.1\|53524_53767_-	DUF1380 domain-containing protein	J9Q7H8	Salmonella_phage	2.0e-29	78.4
WP_001755492.1\|53926_55960_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	2.2e-44	24.1
WP_000004356.1\|56117_57218_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_032252452.1\|57516_57897_-	hypothetical protein	J9Q801	Salmonella_phage	8.5e-27	66.3
WP_161623773.1\|57896_58601_-	hypothetical protein	J9Q6K2	Salmonella_phage	3.0e-86	76.4
WP_161623774.1\|58662_60348_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	92.2
WP_000467662.1\|60451_61066_-	hypothetical protein	A0A0E3GMH9	Enterobacteria_phage	1.2e-99	82.8
WP_001718087.1\|61405_61975_-	hypothetical protein	J9Q7H6	Salmonella_phage	1.4e-52	61.4
WP_014962273.1\|62114_62273_-	DUF3927 domain-containing protein	NA	NA	NA	NA
WP_161623775.1\|62272_62698_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	2.1e-58	83.7
WP_014962274.1\|62791_62980_-	hypothetical protein	J9Q800	Salmonella_phage	9.4e-11	51.6
WP_021512350.1\|62989_63484_-	hypothetical protein	J9Q6J9	Salmonella_phage	3.0e-24	56.2
WP_001404443.1\|63632_64223_-	ribonuclease HI	J9Q745	Salmonella_phage	3.7e-93	83.8
WP_000121543.1\|64805_65036_-	hypothetical protein	J9Q7H5	Salmonella_phage	5.9e-31	84.2
WP_000559570.1\|65221_65815_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	3.4e-99	86.3
WP_032252459.1\|65998_66808_-	hypothetical protein	J9Q7Z9	Salmonella_phage	2.9e-64	52.9
WP_062859151.1\|66966_67524_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	4.8e-87	82.5
WP_001718079.1\|67533_67953_-	hypothetical protein	J9Q743	Salmonella_phage	3.2e-51	71.9
WP_032252462.1\|68014_68659_-	AAA family ATPase	J9Q7H4	Salmonella_phage	3.0e-96	80.8
WP_160378288.1\|68658_69129_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.8e-80	90.4
WP_001348729.1\|69131_69545_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.3e-62	84.7
WP_022644976.1\|69546_70650_-	thymidylate synthase	J9Q6J6	Salmonella_phage	3.2e-191	86.9
WP_001011859.1\|70821_71691_-	hypothetical protein	J9Q742	Salmonella_phage	3.1e-133	81.0
WP_000122502.1\|71768_72911_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.6e-196	88.7
WP_000623685.1\|73017_75333_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	84.4
WP_000037962.1\|75406_75976_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-91	86.8
WP_161623776.1\|75985_76729_-	hypothetical protein	J9Q6J5	Salmonella_phage	1.2e-51	47.2
WP_001404451.1\|76718_78635_-	AAA family ATPase	J9Q741	Salmonella_phage	4.5e-249	73.2
WP_161623777.1\|78864_79950_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	3.7e-184	87.0
WP_000364573.1\|80204_80849_-	hypothetical protein	J9Q739	Salmonella_phage	2.9e-107	86.3
WP_001348683.1\|81050_82265_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	8.4e-76	45.4
WP_001229345.1\|82844_83057_-	hypothetical protein	J9Q7S8	Salmonella_phage	3.4e-33	94.3
WP_032252468.1\|83056_83392_-	hypothetical protein	J9Q7Z5	Salmonella_phage	1.6e-48	84.7
WP_023135695.1\|83388_83568_-	hypothetical protein	J9Q6J1	Salmonella_phage	1.6e-15	81.4
WP_023135696.1\|83607_83883_-	hypothetical protein	J9Q738	Salmonella_phage	1.1e-44	91.2
WP_032187690.1\|84763_87781_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.3e-21	25.2
WP_106735854.1\|87795_88959_-	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_161623778.1\|88968_90297_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_161623779.1\|90296_92726_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	6.1e-25	28.4
WP_001711109.1\|93153_93354_-	membrane protein	J9Q6J0	Salmonella_phage	1.8e-07	54.5
WP_161623783.1\|93444_95784_-	recombinase RecA	J9Q736	Salmonella_phage	1.8e-29	85.1
WP_161623727.1\|96769_97549_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
WP_161623726.1\|97548_98571_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.4
WP_161623784.1\|98824_99940_+	DNA primase	J9Q720	Salmonella_phage	1.3e-208	93.2
WP_161623780.1\|100015_100792_+	hypothetical protein	J9Q7Z0	Salmonella_phage	2.0e-51	41.1
WP_161623785.1\|101072_101330_+	hypothetical protein	J9Q7R9	Salmonella_phage	8.6e-15	59.0
WP_096129526.1\|102135_103104_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	8.5e-172	91.3
WP_000979130.1\|103710_103890_+	hypothetical protein	J9Q729	Salmonella_phage	1.4e-16	72.4
WP_106889137.1\|104234_104525_+	C-type natriuretic protein	J9Q7S1	Salmonella_phage	1.5e-36	77.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP041427

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14175 : 58362

Stx2-converting_phage(35.71%)

transposase,integrase

attL 11249:11263|attR 41570:41584

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
11249:11263	attL	NA	NA	NA	NA
WP_000082158.1\|14175_15147_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000271717.1\|15768_16188_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001436678.1\|16234_16537_-	antirestriction protein	NA	NA	NA	NA
WP_000274480.1\|17906_18341_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104880.1\|18354_18576_-	hypothetical protein	NA	NA	NA	NA
WP_096095885.1\|18576_19230_-	DNA methylase	A0A2I7RE86	Vibrio_phage	6.8e-24	38.4
WP_096095886.1\|19809_21510_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-170	53.1
WP_001309256.1\|21739_22051_-	hypothetical protein	NA	NA	NA	NA
WP_001385002.1\|22114_22474_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000270807.1\|22480_22624_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000756328.1\|23801_24764_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	2.3e-113	68.2
WP_000817635.1\|24760_25966_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.6e-204	89.2
WP_001132895.1\|26682_26934_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_001270417.1\|26930_27218_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	2.2e-19	47.4
WP_000361610.1\|28144_29122_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.4e-100	59.2
WP_096095888.1\|29406_30147_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_096095891.1\|30267_30393_-	transcriptional regulator	NA	NA	NA	NA
WP_096095946.1\|32814_33393_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_072101556.1\|33469_34183_+	molecular chaperone	NA	NA	NA	NA
WP_052943207.1\|34184_34595_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_161623788.1\|34615_37120_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_161623789.1\|37304_37964_+	molecular chaperone	NA	NA	NA	NA
WP_161623790.1\|37954_38464_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_161623791.1\|38480_39590_+	hypothetical protein	NA	NA	NA	NA
WP_096095951.1\|39700_40489_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000169527.1\|41009_41309_+\|transposase	transposase	NA	NA	NA	NA
WP_000878218.1\|41305_42172_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
41570:41584	attR	NA	NA	NA	NA
WP_086563478.1\|43113_43899_-	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_086563480.1\|43895_44495_-	acetyltransferase	NA	NA	NA	NA
WP_096095959.1\|44445_45657_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_096095958.1\|45660_46320_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_161623572.1\|49498_51070_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_161623792.1\|51089_51407_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.7e-39	77.2
WP_096101123.1\|51447_52125_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_000624622.1\|52124_52472_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_161623572.1\|52491_54063_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_096095970.1\|55910_56714_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000169527.1\|57199_57499_+\|transposase	transposase	NA	NA	NA	NA
WP_000878218.1\|57495_58362_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP041428

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

21900 : 57693

Stx2-converting_phage(69.23%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278689.1\|21900_22122_+	conjugal transfer protein TraR	A2I309	Vibrio_virus	3.3e-07	40.8
WP_161623800.1\|22281_23547_+	TraC family protein	NA	NA	NA	NA
WP_096101123.1\|23583_24261_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_000624622.1\|24260_24608_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_161623572.1\|24627_26199_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_096101123.1\|26659_27337_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_000624622.1\|27336_27684_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_161623572.1\|27703_29275_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_161623806.1\|29324_30323_+	conjugal transfer protein TraC	NA	NA	NA	NA
WP_000214084.1\|30319_30706_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
WP_001203745.1\|30702_31335_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_096094291.1\|31331_32324_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_000277845.1\|32349_32811_+	hypothetical protein	NA	NA	NA	NA
WP_161623801.1\|33320_33959_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_000821821.1\|33955_35764_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_000864325.1\|35790_36048_+	conjugal transfer protein TrbE	NA	NA	NA	NA
WP_001030376.1\|36040_36784_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_001287898.1\|36799_37147_+	conjugal transfer protein TrbA	NA	NA	NA	NA
WP_000624108.1\|37265_37550_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_000052618.1\|37536_38082_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_001443292.1\|38011_38374_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_000982833.1\|38370_39747_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_161623802.1\|39743_42566_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_001454501.1\|42587_43067_+	surface exclusion inner membrane protein	NA	NA	NA	NA
WP_000782454.1\|43115_43847_+	complement resistance protein TraT	NA	NA	NA	NA
WP_000009363.1\|44099_46325_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_161623803.1\|46324_51595_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_021518885.1\|51614_52361_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	1.9e-09	30.9
WP_000704522.1\|52419_53280_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	2.3e-11	23.0
WP_161623804.1\|53382_53943_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_001372275.1\|54074_54326_+	hypothetical protein	NA	NA	NA	NA
WP_161623572.1\|54358_55930_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-169	58.7
WP_000624622.1\|55949_56297_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_096101123.1\|56296_56974_-\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
WP_001233868.1\|57231_57693_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.5e-20	37.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041425

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041426

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP041427

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP041428

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection