CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048019	Pediococcus acidilactici strain CACC 537 chromosome, complete genome	4 crisprs	csn2,cas2,cas1,cas9,csa3,DinG,cas3,DEDDh	0	12	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048019_1

78972-79075

Orphan

Consensus_repeat	Method
CAGATGCTCTACCAACTGAGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048019_1

>merge|NZ_CP048019|1|78972-79075|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAACGGCTCAAGATAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAA

>NZ_CP048019|1|1|78972-79075|CRISPRCasFinder
CAGATGCTCTACCAACTGAGCTAA	CGGCTCAAGATAATGGAGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGG
CAGATGCTCTCCCAACTGAGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048019.1\|WP_063504612.1\|88018_88792_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP048019.1\|WP_004166862.1\|65590_66421_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP048019.1\|WP_004166563.1\|86745_87933_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340844
NZ_CP048019.1\|WP_063504613.1\|88864_90589_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP048019.1\|WP_004165587.1\|67257_68940_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP048019.1\|WP_004166854.1\|94146_95124_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235479
NZ_CP048019.1\|WP_002829782.1\|91401_93609_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP048019.1\|WP_004166859.1\|72647_73211_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP048019.1\|WP_002830670.1\|73289_74759_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_CP048019.1\|WP_004166559.1\|84648_85653_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP048019.1\|WP_002829785.1\|95742_95997_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_036686874.1\|74934_76125_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP048019.1\|WP_004165588.1\|66527_67247_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP048019.1\|WP_002830673.1\|69195_71613_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP048019.1\|WP_002829780.1\|90997_91186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_063504232.1\|72019_72655_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP048019.1\|WP_002830677.1\|65003_65465_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP048019.1\|WP_002829779.1\|90588_90855_-\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP048019.1\|WP_004166561.1\|85698_86715_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP048019.1\|WP_002830668.1\|76296_77028_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP048019.1\|WP_063504612.1\|88018_88792_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.91109e-31
NZ_CP048019.1\|WP_004166862.1\|65590_66421_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.17527e-74
NZ_CP048019.1\|WP_004166563.1\|86745_87933_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340844	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	9.2253e-139
NZ_CP048019.1\|WP_063504613.1\|88864_90589_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP048019.1\|WP_004165587.1\|67257_68940_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.15648e-140
NZ_CP048019.1\|WP_004166854.1\|94146_95124_-\|GMP-reductase	gnl\|CDD\|235479	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
NZ_CP048019.1\|WP_002829782.1\|91401_93609_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP048019.1\|WP_004166859.1\|72647_73211_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	9.15597e-71
NZ_CP048019.1\|WP_002830670.1\|73289_74759_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.2669e-65
NZ_CP048019.1\|WP_004166559.1\|84648_85653_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.92078e-32
NZ_CP048019.1\|WP_036686874.1\|74934_76125_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP048019.1\|WP_004165588.1\|66527_67247_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	7.80634e-87
NZ_CP048019.1\|WP_002830673.1\|69195_71613_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP048019.1\|WP_063504232.1\|72019_72655_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.53923e-49
NZ_CP048019.1\|WP_004166561.1\|85698_86715_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.01195e-35
NZ_CP048019.1\|WP_002829779.1\|90588_90855_-\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	7.13708e-55
NZ_CP048019.1\|WP_002830677.1\|65003_65465_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.6924e-26

>NZ_CP048019.1|WP_002830668.1|76296_77028_+|hypothetical-protein
MDKIKIPKINYHVDRKSYLPAILAVILTSTVWYFSSHFSSEPFKHNLTVQIIFFLASFMANFITFDQLTNKTNLRLIAPLAVIPVAFFIILLVSKERYVSLLGLLTLVPFVSVFLPFQGKNGVGLISFAFSISVLSPIAFFYIRNAFVSSMFLKTCLLLCLVFLMILFSVFVAHPEQFIYLEIGLLVVIAIFSFVLFKQWSAVLYPMIGILGWYLPRVKLPRNFILLVLIILICVTFLFTAGH
>NZ_CP048019.1|WP_036686874.1|74934_76125_-|methionine-adenosyltransferase
MSERHLFTSESVSEGHPDKIADQISDAILDELLKNDPDARVACETTVTTGLVVVVGEISTTAYIDIQKVVRKTIKDIGYVGGEYGFDGENCAVIVAIDEQSPDIAQGVDDSLETREGHEDRLNRIGAGDQGLMFGYATDETKELMPLPIMLSHHLMQRIAKLRKEQVISYLRPDAKAEVTVEYDDNDQPVRVDTVVLSTQHDPDVTLEQIRKDVIEKVIKEVIPAELLDEKTNFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSASYAARYIAKNIVAADLAKKAEVQIAYAIGVAEPVSVMVDTFGTGKVSEEALTKAVRQIFDLRPAGIIEMLDLKRPIYKQTAAYGHFGRTDVDLPWEKTDKVAELKAFFQK
>NZ_CP048019.1|WP_002830670.1|73289_74759_-|MFS-transporter
MKKKQTNVALVTVAIFVATFMSAIEGTIVSTAMPTIVGDLHGVNLMNWVISIFLLTNAIFTPIYGKLSDIFGRKRVFIIGIIIFLIGSMLSGLAHSMTTLIIWRALQGIGAGSIMPVSNTIIADIYSLEKRAKVMGLNGSAWGIASIIAPLLGGFIVDNLSWHWIFFINVPIGIITIILIQLYLKEEVSVHRKKIDYWGSVWLMLSLLGLMYGFQLLGESTASKLILGLSFIIFVVAGALFIRQERRAEDPIIFLDLFNDRTFVIQNVATMLVSGLLIGFEVYLPTWTQGILGLPASLAGFAVTPSSVLWIFGSFLAGKMLVKLKANQILRISLTILAIGSFLLAVIPASTPFVAFFFIAAILGVGFGITITSTLVISQQLVSKDRIGVATSFNTLAKTLGQTIMMSVFGIIMNGTINMGIAHHPRINMTMMNQVINPQTAKQLPADLLPTLRDILYSALHNIYICGFILIIVAIVINAFSRPRTQKNK
>NZ_CP048019.1|WP_004166859.1|72647_73211_+|methyltransferase-domain-containing-protein
MLDNAMQYSHRLLAEVVQPGDHVVDATMGNGHDTLFLANLVQSQGRVFSFDIQAAALSATEARIEKQLPDHQHVQLIQDSHDQLAQYVDTPISGAVFNLGYLPGGDKQIITHSASTIAAVQQCLRLLKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIERRK
>NZ_CP048019.1|WP_063504232.1|72019_72655_+|phosphatase-PAP2-family-protein
MRFKKFGWLILNWLPLLGLLTLVISVSNHWNWVHTYDCYLQKIIHGWQSPGLTPLVKIYTQLGNAKPFIFISIVILGMLLWRGYDRLAAFFLANVVLGNAINHLIKLWIQRPRPHFRLITVGGYSFPSGHSVAAMLLFGSLIFITTQTVRSPKWRISWILTCIILMLLLGLSRVYLNVHYPSDVTAGLLLGLVILQTTHWIFYRKKESQHA
>NZ_CP048019.1|WP_002830673.1|69195_71613_-|leucine--tRNA-ligase
MAYNHKEIEPKWQRYWQKHETFKTVESEQKPKYYALDMFPYPSGQGLHVGHPEGYTATDIMSRMKRMQGYKVLHPMGWDAFGLPAEQYAMKTGNNPKDFTAHNIKNFKRQIQSLGFSYDWSREVNTTDPEYYKWTQWIFEQLYKKGLAYEKETLVNWAPDLMGGTVVANEEVVNGKTERGGFPVYRKPMKQWILKITAYADRLIDDLDLVDWPDSIKEMQKNWIGRSIGASVFFDVEDSDQKIEIFTTRADTLYGATYLVISPEHPLVDQLTTLESKAAVEEYKQAVATKSDLERTDLNKDKTGVFTGSYAVNPVNGKKIPIWIADYVLASYGTGAVMAVPAHDPRDYEFARKFKIDIVPVIGGGNLDEEAYTGDGPHINSGFLDGLNKQEAIDKMLDWLEEHGAGHKKVNYRLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLRLPATDNIKPSGTGESPLANLEDWLNVVDENGRKGRRETNTMPQWAGSSWYFLRYVDPKNQNKIADEDLLKEWLPVDLYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLVNQGMILGSNHEKMSKSKGNVVNPDDIVERFGADTLRLYEMFMGPLTESVAWSEEGLNGSRKWIERVWRLMIDDNNHLRDRITMINDHKLDLIYNQTVKKVTEDYENMRFNTAISQMMVFVNEAYKADALPMVYMEGLVKLLSPIVPHVAEEIWQIMGHEETITYEAWPTYDESKLVQDTVQVILQVNGKVRSKVEVEKDLDQAELEKIALADERIQQWTAEKDIKKVIVIPNKIVNIVAK
>NZ_CP048019.1|WP_004165587.1|67257_68940_-|polysaccharide-biosynthesis-protein
MDKPSEFDTAESQYLGSQPLRENSGNSSSKAKMLEGSAWMTAGSIFSRILGAIYIIPWVIWFGVYSDQANALYTKGYNIYSFFLIAAIAGIPSAISKQVAHYNAINEFALGQRLYKRGLLLSVGTGVVCAAILFFGAPFLNDGDPNVTTVLHALAWAVLVIPTMSLTRGFFQGYQEMGPSAVSQFIEQLARVAYMLVTAYLIMYKNHGDWVYGVAQSTFAAFIGALGGLLVLIGYFVKYRRRLRYLSQHSVNGLAISTTSLYKEIIAQAVPFIIIGSAITIFQLIDQYTFFRIMRSVSDYSATVLNNMFAIFAFNANKLVMIVISLASALAVTSVPILSEAKTRGDRAEISRQVADSILLFAFLMIPSALGMAAVAQPAYTLFYHLSDVGTAILQFNSYVAIVLGLFTVISAVMQGIGENVLAVKYFVVGMIVKFIFQFPMVAIFSAVGSLISTAIGFAVVNWLILRHINREYGLDYDKINGFIGKIITYSFGTFFIAFVVTNGLYLVMNPANKVQALIVILVAATLGGLFYVVCVLKSRLADEIIGGRATGLRRMLKIK
>NZ_CP048019.1|WP_004165588.1|66527_67247_-|rRNA-pseudouridine-synthase
MRVDKFLHDMNVGTRSQIRKLIKEKAVFVNDVVAKSGRVKVDPVVDQVRLGEQVITYQQYFYFMMNKPLGVVTATEDRKQKTVMDLFNKVDFRKDLFPVGRLDKDTEGLLLITNNGPLAHQLLAPERHVQKTYEAVVTGQITDPAVKQFADGIVLKDGTQLKPADLTILNYSALDEQTLVHVTLKEGKYHQVRRMFGSLGERVVSLKRISFGPLQLEEGLLPGTYRELSDEEIEKLKTE
>NZ_CP048019.1|WP_004166862.1|65590_66421_+|NAD(P)H-hydrate-dehydratase
MLKINRQTLKSHWPVRQKQSHKGTYGHLLLIAGNAQYGGAGILAASAAVYAGGGLVTLATAKNNFTAVRATLAEIMLIDFTDFDQLSQSLANATGVVIGPGLGTDSTSLAVLNFTMAHIAEGVPLIIDGSAIDLVAQHDLRVSHHPTIYTPHQMEWQRLSGIKIADQSVERNQAVVDQLNATVVLKHYHTEIYAPAAPVAQIMAGNPGMATGGSGDSLTGILLALIAQANSVNEGVRLGTFLHSYTADLIYEHEAVVLPHRLIRRLPAVLKQLSQP
>NZ_CP048019.1|WP_002830677.1|65003_65465_-|universal-stress-protein
MDYKKILFGYDGSPESMAAFNRAVEIAKSNHAKLIIASVMKKQPANTASVSLGFGVIETGIDLQDTLDQWKTTLEKLKQDAQQQGLPAEDIEVVFKQGSPKSMLSYTLPKEYDVDLIVLGATGMGTVAQVILGSTASYVVENAAPDVVIVKNN
>NZ_CP048019.1|WP_004166559.1|84648_85653_-|flippase-like-domain-containing-protein
MILAGLVIFGYSLRGVNLHQVSHDILNLNVGWLLVALLCIILYLGFEAVATKVLVESNGDRLSWKDAIRIPLIEQLFNGLTPFSSGGQPAQLVALMQSGIEGGRASSVLLMKFVVFQSMVVLNFIFSLLIGFQYLEDKIKFLSWFVLFGFLIHLAVIIGLLMIMYWHNFTKKMFDLIFIPIKRFTKPERYLRWKTSIDAKVDTFYLESVRMKSQWRLLAKVALLTFLQLLFYYLIPYFILLALGKTHVHLIMVTCLHVLIFMVISLFPIPGGAGGAEYGFSVIFAQFVGNSSKLVLAMIIWRLLTYYFGMFAGMFATVIKPNRINRIVPKKTSE
>NZ_CP048019.1|WP_004166561.1|85698_86715_-|glycosyltransferase-family-4-protein
MPIKVNMFSSASKVKGQGVGSAYEELIRLLKTHFPKEIDLSINRYTQADISHYHTIDPQFFVSTFTKKRGVKVGYVHFLPETIEGSLKIPQPFRWLFYKYIIAFYKRMDQIVVVNPTFIDQLVKYGIKREIITYIPNFVRKDEFYQYDAEQRRQVREQLGVQDRFTILGIGQVQERKGVKDFIKLAQQHPEMYFIWAGGFSFGRLTDGYADLKKVVDNPPANLKFTGIVDRNKLVEYYNAADLFLLPSYNELFPMSVLEAFSCGTPVMLRDLDLYHSIIKGYYIAADNYAEMDQKLSALVKNPAQLRDYQQRADQASAEYSEDHLAEIWLNYYSSLLK
>NZ_CP048019.1|WP_004166563.1|86745_87933_-|glycosyltransferase-family-4-protein
MNIGLFTDTYFPQVSGVATSIKTLRDQLEKQGHQVYIFTTTDPKVDTNVYERNVFRFTSIPFVSFTDRRIAISGFIRATQIAKELNLDIVHTQTEFSLGWMGKFVAKALKIPVIHTYHTMYEDYLHYVANGKLLKPYHVKQMTRAFCYHIDGIVAPSERVQRTIQRYGIQVPTRIIPTGVNLEQYQKDSNPQQCREALGYDAKTPVLLSLSRLAYEKNIQEVIDCFPAILKEVPDAQLLIVGDGPARTSLENQVHDLGLEKHVKFTGEINNDQVYRYYQAADLFVSASDSESQGLTYIEAMASHLKVVAKSGPYTDELLDDPSLGKVFDTEGQLVQAIKRYIEHPDEFNDPRPREKKLYEISADYFGKRIVDYYNSAISAHADLEHGSKKESELE
>NZ_CP048019.1|WP_063504612.1|88018_88792_-|alpha/beta-hydrolase
MEFILKTGETIYYEDQGEGIPILFLTGFGGNTEIWSGQVNFFLQHGYRVIRLDYLNHGRSDRVDYDLKIDDLADEVLQLVDALELKEPIGIGNSMGAAVLWNILSIRGWDFVSKAIFVDQSPRMMNDDQWHYGFKNLNEANFEQLMSEPILRPAYRRIEGYVYKNSKAIDSKYPFSQPKNRSLVKGHARKDWRPVLRAATKPVLFILGEKSPFFNPQMGDALKQLNSRIQVEVMPNVGHIPMAEEPAQFNQLVLRFL
>NZ_CP048019.1|WP_063504613.1|88864_90589_-|phosphoenolpyruvate--protein-phosphotransferase
MTGTLKGIAASDGIAIAKAYLMVDPDLSFEKKTITDVDAEINRLHDALEQSKKELTLIKAKAAENLGAEEAEVFEAHLTILSDPELIGNIEDKIKNDTINAEEATKEVTDNFIAMFEAMTDNAYMQERAADIRDVTKRLMSHLLGVELPNPALIDSEVIIVAHDLTPSDTAQLDRRYVKGFITDIGGRTSHSAIMSRTLEIPAVVGSEKATTSVKQGDMMIVDGLTGDALINPSDDEIKEYKQKSADFKAQKAEWEKLKNERTVSKDGVHFDLAANIGTPDDLQGVLDNGGEAVGLFRSEFLYMNASELPSEDQQFEAYKKVVEGMNGKQVVVRTMDIGGDKDLPYLPLPEEMNPFLGYRAIRISLDRTDLFRTQLRALLRASAYGKLAIMFPMIATVAEFKKARAIYDDERQKMIDAGTKVGEIQVGMMMEIPAAAMIADKLAKYVDFFSIGTNDLIQYSFAADRGNEKVSYLYQPYNPSLLRLIKQTIDASHAEGKWTGMCGEMAGDQIAVPILMGLGLDEFSMSATSILKTRSLMKKLSTDDMKKLAEKAITEAETNKDVIKLVEETVNNK
>NZ_CP048019.1|WP_002829779.1|90588_90855_-|phosphocarrier-protein-HPr
MEKRDFHVIAETGIHARPATLLVQAASKFNSDIQLTYKDKSVNLKSIMGVMSLGVGQGADVTISADGDDEADAIAALEDTMKKEGLSE
>NZ_CP048019.1|WP_002829780.1|90997_91186_-|hypothetical-protein
MRDYLKLLNDLKDGVLDELTITAEEFQEFQPVFMDFPERKQLIGEAQRGGTITYRYENNKKQ
>NZ_CP048019.1|WP_002829782.1|91401_93609_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MLCQNCHKNEATIHLYTNVNGRRTEVNLCQNCYQLLKNQQLNNNNGNGGARMAQDPFGFGNLDDIFRAMQGGNVSRPEDMYGQQVPPTQAGRGGGNNPNGGNGSSLLGQYGLNLTDLAKQGKIDPVIGRDKEIERVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQRIVEGSVPQKLLNKQIIRLDVVSLVQGTGIRGQFEQRMQELMKEVQNNPDLIVFIDEIHEIVGAGNAEGGMDAGNVLKPALARGDFQLVGATTLKEFRDIEKDAALARRLQPVQVDEPSEEEAIKILKGIQKKYEDYHHVHYTDDAIVAAVKLSKRYIQDRYLPDKAIDLLDEAGSKKNLTINVADPETIQKKIDEAEAEKKKALESEDYEKAAYYRDQVSKLEKNKDGATNKEDEPTITAEDMEKIIESKTDIPVGDLQKQEQEQLQNLASNLKAHVIGQDEAVDKISRAIRRNRIGLNGTGRPIGSFLFVGPTGVGKTELAKQLADQLFGSKDAMIRFDMSEYMEPHSISKLIGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTVSFKDTIIIMTSNAGSGDVEADVGFGAAMQGKTHSVLDKLGNYFKPEFLNRFDDIVEFHALTKDNLMQIVDLMIADVNKMLATQGLHVNVTKPVEERLVELGYDPKMGARPLRRVIQEQIEDRIADFYLDHPSEKQLIARIKDDKIEVAPDDKK
>NZ_CP048019.1|WP_004166854.1|94146_95124_-|GMP-reductase
MKVFDYEDIQLIPAKCVVRSRSECDPTVELGKHTFKLPVVPANMQTIINEEIAEKLAADGYFYIMHRFEPETRLAFVKKMKAKGLISSISVGVKDGEYDFIDELAAKNLVPDYITIDVAHGHAQTVIDMIHYIKEKLPESFVIAGNVGTPEGVRELESAGADATKIGIGPGKVCITKLKTGFGTGGWQLSALRWCAKVARKPLIADGGIRNHGDIAKSIRFGATMVMIGSLFAGHIESPGETKVEDGVTYKEYFGSASQYQKGEAKNVEGKKIWIHQRGHLADTLKAMQEDLQSAISYAGGRDLESIRKVDYVIVKNSIFNGDIL
>NZ_CP048019.1|WP_002829785.1|95742_95997_-|hypothetical-protein
MSKNLKIDLNTDELIGSREASLMWGKQKDYVRTIYNKYPERFPTGTIRKFGKQLIVTREGMESVTGIKYEDLDKKNIEKAKLPR

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Crispr_ID: NZ_CP048019_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048019_2

281170-282657

TypeII

Consensus_repeat	Method
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CRISPRCasFinder
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CRT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	PILER-CR

22 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP048019_2

>merge|NZ_CP048019|2|281170-282657|CRISPRCasFinder,CRT,PILER-CR
TTGATTAGCCTTATTGATTTGGCATCCTTTTGAAACTGTCATCGAGTTCATAAGCCACAGCATTTTGATCTCAACCTTATTGATTTAACATCCTTCTGAAACATTATAGACTTAATTTTGGCTCATACACTTGATCTCAGCCTTATTGATTTAACATCCTTCTGAAACACGGCACTCGCCATTCGAACATGAAATCGAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAAACCTTTGGTCGGCACTTGGAGACTTCTTGATCTTAACCTTATTGATTTAACATCCTTCTGAAACCCGTCAGGCAAGTTGCAAAACAAGCCGATAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAAAAAGTCACTAGCTTAACTAAAGCTGGTAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTATCGCCAACGCCGTACCAGATGTACGTATGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTGGGCTTTGGCGTATTCCATTGCCGAATCCGATCTTAACCTTATTGATTTAACATCCTTCTGAAACCAGACGGGATGACGAAAATTGTGCCGTCTTGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAATAATCCCAAGATTTTGTCGAGAATTTTGGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAGGAAAACACTCCGTTATAACGGGCATAGAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACGCATACGCTCGCTCAATCCTTCCACTCACTGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAGTCTCATGGTAACGAACCTAAGGTGGCTAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTGCTTTGCCATTTTAAAAAGTAAGACCAGAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACCAAGACTAACCCGCCTTATGTGGTCTATTAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTGCTTTGCCATTTTAAAAAGTAAGACCAGAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTAAGAACAATGCCCGAAAGCTTACGTAATCGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTACCTCTTTCGTCTGGTCAGTTACCGGATAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACAAGTTATCAAATACATATTCAGGAACGTGTGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTATTCGAACGTGTATATTATTAGTCAAAAAGATCTTAACCTTATTGATTTAACATCCTTCTGAAACCTCTCCTTCATAAACCTTAACATCATAACCGATCTTAACCTTATTGATTTAACATCCTTCTGAAACTAGCTAAATCTCCATTAGTAACTAATCCACGATCTTAACCTTATTGATTTAACATCCTTCTGAAAC

>NZ_CP048019|2|2|281170-282657|CRISPRCasFinder
TTGATTAGCCTTATTGATTTGGCATCCTTTTGAAAC	TGTCATCGAGTTCATAAGCCACAGCATTTT
GATCTCAACCTTATTGATTTAACATCCTTCTGAAAC	ATTATAGACTTAATTTTGGCTCATACACTT
GATCTCAGCCTTATTGATTTAACATCCTTCTGAAAC	ACGGCACTCGCCATTCGAACATGAAATCGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAACCTTTGGTCGGCACTTGGAGACTTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CCGTCAGGCAAGTTGCAAAACAAGCCGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAAAAGTCACTAGCTTAACTAAAGCTGGTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATCGCCAACGCCGTACCAGATGTACGTAT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGGGCTTTGGCGTATTCCATTGCCGAATCC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAGACGGGATGACGAAAATTGTGCCGTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AATAATCCCAAGATTTTGTCGAGAATTTTG
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGGAAAACACTCCGTTATAACGGGCATAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	GCATACGCTCGCTCAATCCTTCCACTCACT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGTCTCATGGTAACGAACCTAAGGTGGCTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAAGACTAACCCGCCTTATGTGGTCTATTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAAGAACAATGCCCGAAAGCTTACGTAATC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TACCTCTTTCGTCTGGTCAGTTACCGGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAGTTATCAAATACATATTCAGGAACGTGT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATTCGAACGTGTATATTATTAGTCAAAAA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CTCTCCTTCATAAACCTTAACATCATAACC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAGCTAAATCTCCATTAGTAACTAATCCAC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC

>NZ_CP048019|2|1|281170-282657|CRT
TTGATTAGCCTTATTGATTTGGCATCCTTTTGAAAC	TGTCATCGAGTTCATAAGCCACAGCATTTT
GATCTCAACCTTATTGATTTAACATCCTTCTGAAAC	ATTATAGACTTAATTTTGGCTCATACACTT
GATCTCAGCCTTATTGATTTAACATCCTTCTGAAAC	ACGGCACTCGCCATTCGAACATGAAATCGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAACCTTTGGTCGGCACTTGGAGACTTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CCGTCAGGCAAGTTGCAAAACAAGCCGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAAAAGTCACTAGCTTAACTAAAGCTGGTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATCGCCAACGCCGTACCAGATGTACGTAT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGGGCTTTGGCGTATTCCATTGCCGAATCC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAGACGGGATGACGAAAATTGTGCCGTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AATAATCCCAAGATTTTGTCGAGAATTTTG
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGGAAAACACTCCGTTATAACGGGCATAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	GCATACGCTCGCTCAATCCTTCCACTCACT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGTCTCATGGTAACGAACCTAAGGTGGCTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAAGACTAACCCGCCTTATGTGGTCTATTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAAGAACAATGCCCGAAAGCTTACGTAATC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TACCTCTTTCGTCTGGTCAGTTACCGGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAGTTATCAAATACATATTCAGGAACGTGT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATTCGAACGTGTATATTATTAGTCAAAAA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CTCTCCTTCATAAACCTTAACATCATAACC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAGCTAAATCTCCATTAGTAACTAATCCAC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC

>NZ_CP048019|2|1|281236-282657|PILER-CR
GATCTCAACCTTATTGATTTAACATCCTTCTGAAAC	ATTATAGACTTAATTTTGGCTCATACACTT
GATCTCAGCCTTATTGATTTAACATCCTTCTGAAAC	ACGGCACTCGCCATTCGAACATGAAATCGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAACCTTTGGTCGGCACTTGGAGACTTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CCGTCAGGCAAGTTGCAAAACAAGCCGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAAAAGTCACTAGCTTAACTAAAGCTGGTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATCGCCAACGCCGTACCAGATGTACGTAT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGGGCTTTGGCGTATTCCATTGCCGAATCC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAGACGGGATGACGAAAATTGTGCCGTCTT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AATAATCCCAAGATTTTGTCGAGAATTTTG
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGGAAAACACTCCGTTATAACGGGCATAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	GCATACGCTCGCTCAATCCTTCCACTCACT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AGTCTCATGGTAACGAACCTAAGGTGGCTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CAAGACTAACCCGCCTTATGTGGTCTATTA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TGCTTTGCCATTTTAAAAAGTAAGACCAGA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAAGAACAATGCCCGAAAGCTTACGTAATC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TACCTCTTTCGTCTGGTCAGTTACCGGATA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	AAGTTATCAAATACATATTCAGGAACGTGT
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TATTCGAACGTGTATATTATTAGTCAAAAA
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	CTCTCCTTCATAAACCTTAACATCATAACC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC	TAGCTAAATCTCCATTAGTAACTAATCCAC
GATCTTAACCTTATTGATTTAACATCCTTCTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048019.1\|WP_063504828.1\|294014_294659_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP048019.1\|WP_002829963.1\|280358_281006_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP048019.1\|WP_002829951.1\|271299_271854_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP048019.1\|WP_002831113.1\|271982_272369_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP048019.1\|WP_005916102.1\|292412_293822_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP048019.1\|WP_063684454.1\|274004_274643_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP048019.1\|WP_002829957.1\|276107_277940_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NZ_CP048019.1\|WP_002829959.1\|278239_279862_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP048019.1\|WP_162013234.1\|284759_288860_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP048019.1\|WP_002829962.1\|279884_280169_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP048019.1\|WP_063504663.1\|283636_284542_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP048019.1\|WP_063504827.1\|289851_292386_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341064
NZ_CP048019.1\|WP_002831107.1\|283353_283659_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP048019.1\|WP_162013235.1\|295056_296259_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP048019.1\|WP_162013236.1\|296260_296461_-\|DUF3173-domain-containing-protein	unknown	unknown	gnl\|CDD\|371495
NZ_CP048019.1\|WP_063504664.1\|289043_289625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370635
NZ_CP048019.1\|WP_063504661.1\|272653_273973_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226583
NZ_CP048019.1\|WP_063504662.1\|282685_283357_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP048019.1\|WP_002829956.1\|274710_275886_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NZ_CP048019.1\|WP_002829950.1\|268787_271151_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259

Protein	Function_ID	Function_description	E-value
NZ_CP048019.1\|WP_063504828.1\|294014_294659_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.6909e-43
NZ_CP048019.1\|WP_002829963.1\|280358_281006_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	5.07026e-10
NZ_CP048019.1\|WP_002829951.1\|271299_271854_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	2.37568e-37
NZ_CP048019.1\|WP_002831113.1\|271982_272369_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.46619e-22
NZ_CP048019.1\|WP_005916102.1\|292412_293822_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.10183e-48
NZ_CP048019.1\|WP_063684454.1\|274004_274643_+\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	4.84743e-58
NZ_CP048019.1\|WP_002829957.1\|276107_277940_-\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	4.05738e-28
NZ_CP048019.1\|WP_002829959.1\|278239_279862_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP048019.1\|WP_162013234.1\|284759_288860_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	2.00273e-143
NZ_CP048019.1\|WP_002829962.1\|279884_280169_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.42388e-45
NZ_CP048019.1\|WP_063504663.1\|283636_284542_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.63694e-97
NZ_CP048019.1\|WP_063504827.1\|289851_292386_-\|M1-family-metallopeptidase	gnl\|CDD\|341064	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1). This M1 peptidase family includes eukaryotic and bacterial members: the catalytic domains of aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease, preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1, also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP), or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	0
NZ_CP048019.1\|WP_002831107.1\|283353_283659_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.63081e-29
NZ_CP048019.1\|WP_162013235.1\|295056_296259_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	6.30712e-39
NZ_CP048019.1\|WP_162013236.1\|296260_296461_-\|DUF3173-domain-containing-protein	gnl\|CDD\|371495	pfam11372, DUF3173, Domain of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes. These proteins appear to be distantly related to HHH domains and are therefore likely to be DNA-binding. Genomic environment-visualisation confirms the likely function as being DNA-binding, as this short protein lies very closely between an integrase and a replication protein (http://www.microbesonline.org/).	1.90096e-18
NZ_CP048019.1\|WP_063504664.1\|289043_289625_+\|hypothetical-protein	gnl\|CDD\|370635	pfam09726, Macoilin, Macoilin family. The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.	0.000205938
NZ_CP048019.1\|WP_063504661.1\|272653_273973_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	9.35236e-172
NZ_CP048019.1\|WP_063504662.1\|282685_283357_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	7.21694e-102
NZ_CP048019.1\|WP_002829956.1\|274710_275886_-\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	3.97227e-87
NZ_CP048019.1\|WP_002829950.1\|268787_271151_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0

>NZ_CP048019.1|WP_002829963.1|280358_281006_+|CPBP-family-intramembrane-metalloprotease
MKISKSSLLTLITYLAIFLLPSVINLFVRLGASFIWVETIDYLVGAALLVVINLKNNEINQIETRRIPFFRAIAWGIIGTALVIVLQFVVSYVTFILGQNPASANTATLVTLAKINPFFVLAITVGAPIMEELVFRKVLFGNLSTLFGMRSNLGLTIMAIISSLAFAFMHNDSHIFLYAAIGLLFCWLYHKTGRIQTSMIAHILMNGLVVLPLVM
>NZ_CP048019.1|WP_002829962.1|279884_280169_-|co-chaperone-GroES
MLKPLGDRVILEAKDEEEQTVGGIVLASNAKEKSQTGKVVAVGNGRVLDDGKTLPMNVKVGDTVVYDKYAGTEVTYEDQKYLVVHEKDLVAVVE
>NZ_CP048019.1|WP_002829959.1|278239_279862_-|chaperonin-GroEL
MAKEIKFSEDARTKMLKGVDKLADTVKSTIGPKGRNVVLEQSYGSPTITNDGVTIAKSIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATEKAVAALHNMSHEVKTKDDIAQIASISSANPEVGKLIADAMEKVGNDGVITIEESRGVDTTLDVVEGMQFDRGYMSQYMVTDNDKMEANLDNPYILITDKKIANIQDILPLLQSVVEQSRSLLIIADDITGEALPTLVLNKMRGTFNVVAVKAPGFGDRRKEQLEDIAILTGGTVITDDLGLNLKDVTIEQLGQANKVTVTKDDTTIVEGSGSQEQIAERVAMIKQQISETTSDFDKEKLQERLAKLAGGVAVIRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALVNVIASLEDLDAEGDELTGINIVRRALEEPVRQIAENAGEEGSVIVTKLKTQKDGVGYNAATDEWVDMIEAGIVDPTKVTRSALQNAASVSALLLTTEAVVADLPEEKPAAPAAPNPGMGGMM
>NZ_CP048019.1|WP_002829957.1|276107_277940_-|APC-family-permease
MFSYLKRILIGKPLKTLDESGQALTKFKALALLSSDALSSIAYGTEEILSVLIVLSAAATWYSIPIAAIVLVLLFAITVSYRQIIKAYPSGGGAYVVASKNWGTSAGLVAGGSLLVDYMLTVAVSVTSGTEAITSAIPALQKYHVAIAVLIVLGIMALNLRGLRESASFLTIPVYLFVVVISIMIIVGLYNIVTGQVTYHAAAAIGSTVPGMTFVLFMRALSSGSSSLTGVEAISNAVPNFKKPRRKNAAATLAIMSLILASFFAGITFLAYYSGITPMSSQTVLSQIGVTVFGHGIFYYILQLSTALILAVAANTGFSAFPMLAYNLAKDKFMPHAYMDRGDRLGYSNGIISLAAGAIVLILIFGGQTGLLIPLYAIGVFVPFTLSQSGMIVHWKREGGAHWWINASANLLGALLSAVLVVCLLFLHFSNVWPYFVVMPLLLRMFYKIRKHYDEVADQLRVVEKGKVNLHDYDGSTVIVLVSNVTQVTSGAINYARSIGDYVIAMHVSFDANPEKEHKTAMEFKAEYPDVRFIDIHSSYRSITNPTLRFCDVIAKRAAERNYTTTVLVPQFVPRKPWQNILHNQTGLRLRAALNSRENIIVSTYNYHLK
>NZ_CP048019.1|WP_002829956.1|274710_275886_-|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MRFEIVVSLFATMIISAILTPFVRRIAFKIGAVDKPNARRVNKVPMPTMGGLAIFLAFNFSLFFLLRNQIPNPQFYGIFFGECIIMLTGIIDDIFELKPSQKMIGILLAALAVYWFAEVQMTTLTLPFIGIVHLGWLSLPITLLWIAAITNAINLLDGLDGLATGVTIIALFTTGFTGLFFLPSTNIYIVIMIFTLVAAEVGFLPYNFFPARIYLGDTGALFIGFMIAVFSLSGLKNATFISVLIPVMILGVPLTDTIYAILRRLLNKQSIAHADKRHLHHRLMQMGLTHRQTVLVIYGISMIFSFIALLYPLSTLWGSVLLTIGILVGIELFVEAIGLVGENRTPMLSWIKRLVRTTTSKTASNEFKEEDTLKDRVRSRSERHQQKKHHD
>NZ_CP048019.1|WP_063684454.1|274004_274643_+|YigZ-family-protein
MKLILSVKEPVTTEQDIKKSRFISRLIPVQTEEEAQTKLQDIREIEVKATHNCFAYVLGDHQDIQRASDDGEPSGTAGAPILEVLKRENLTNVLVVVTRYFGGIKLGAGGLIRAYGSSTSLAVQSATLMESVDQKLLAITIDYQNNDQLTYYLEQHQITQVNHEYTTQVITTVAVDQDQVADLKAELIGLFSGNVSFKDGGQQRVQVPYQPQ
>NZ_CP048019.1|WP_063504661.1|272653_273973_-|DEAD/DEAH-box-helicase
MEAKVKEKYYGRLVPVNQAEATDPTVNYFPAVIVKKRRIHCQRCGATTKLKEGSLPNQQYYCRHCINLGRMSTLVKLGNLPEPNHFPVGRSYLKWQGKLTPDQQRCANEIISSIKQQTDRLLWAVTGAGKTEMLFPGINFALKKALRVAIASPRIDVVLELHPRIQAAFPEIAIALLHGHTSTPYTYTQLVLCTTHQLLRFYHAFDVLIIDEVDSFPFAMNSALHYAAHQARKECGTTIYLTATPDGQLLKESRAHRLSTSYLTRRFHGYPLPEIKVVSGCNWQKLIHRQRLPERLRQFLMAQVKAQRQFLVFVPRIDQLSSVLQAIQKQFPELGLATVYAEDPERIEKVSAMREGQLTGLITTTILERGVTFPGIDVAVLGADDEIFSMAALVQIAGRVGRSPKRPTGTVLFIGQMLTRRIKRAQRQIKFMNQQAFKQ
>NZ_CP048019.1|WP_002831113.1|271982_272369_-|ComF-family-protein
MRKAFCNDFINFIQSLVKEDEHLVPIPVDQGTIKVRGFNQVAGLIEGLEFEPVLISQRSKQARHQFQRSRRERLQRENPFRVVEPNKVAGAKWVIIDDIYTTGVTVRQAGRELSKHGARQVRSITLCR
>NZ_CP048019.1|WP_002829951.1|271299_271854_-|ribosome-associated-translation-inhibitor-RaiA
MLDFNVRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQDRTAKVEVTIPLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRETGYKGVEIPQEDAREDEEEASEFDIVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVDIVYRRHDGRYGLIESANE
>NZ_CP048019.1|WP_002829950.1|268787_271151_-|preprotein-translocase-subunit-SecA
MANILKKWVESDAREIKRLGKKADKIDALKDEMAQLSDEELKAKTPEFKERLKNGETLDDILIEAFAVAREGAKRVLGLFPFRVQLIGGMVLHGGNIAEMKTGEGKTLTATLPVYLNALGGEGVHVVTVNEYLAERDSTEMGELYKWLGLTVGVNTAEMSPDEKREAYNCDITYSTNSEIGFDYLRDNMVVYKEDMVQRPLNFALIDEVDSVLIDEARTPLIISGQTEPSVTLYQRADRFVKTLTDGDYTIDWESKSISLTENGIRRGEKYFNTDNLYDVENSALNHHIDQALRANYIMTKDKDYVVSDDGEVLIVDSFTGRVMEGRRFSDGLHQAIEAKEHVEIQDGSKTMANITYQNLFRMYKKLSGMTGTAQTEAEEFREIYNMEVVSVPTNRPVVRDDRPDLLYPTLESKFKAVVKEIKKLHTKGQPVLVGTVAVETSEYLSRLLDRERIPHVVLNAKNHAREAEIVANAGQKGAVTIATNMAGRGTDIKLGPGVVELGGLAVIGTERHESRRIDNQLRGRSGRQGDVGMSQFYLSLEDDLMIRFGSERIKDLLSRMKVADEDAVIQSRLISRQVESAQKRVEGNNYDARKNVLQYDDVMRAQREVIYAERQQVIMEEHSLKDVLMPMVYRTIDRVVDAHTAKTKKSYDLDTIVEFARTTLVNENDINIEDLEGKSANEIKDYLKQLADQMYKQKEDALYAPEQILEFEKVVILRVVDQHWTDHIDAMDQLRQSVGLRGYGQLNPLVEYQQEGYRMFNEMVTDIEYETTRLFMKSEIRQNLER
>NZ_CP048019.1|WP_063504662.1|282685_283357_-|type-II-A-CRISPR-associated-protein-Csn2
MKLTYRTHEPVEIKPQAITVLGTNNSTVYTDLVNGMQERNELILAFDENYKELEISKVFDWIGDVGTQDLVIQKYLTKIERVFAEGLVDGQRNQIHDQVNQLFNTIAEQLFMLDLPISVNYDFDLKKLLKYCGVHFDPLSVGNPYGIIEAVLKIHEECAINSCVVLTNVAHYLTANQIEELTQLVSQTNQALLLIEFTEIGNQEAYGNSEFYYIDNDFVDWHQ
>NZ_CP048019.1|WP_002831107.1|283353_283659_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVETAVQRKQYRQFRKALINEGFLMIQYSVYVRVCVNKKSATFMENRIKTYLPENGTIQALTLTEKQYNDMHFLVGERVKDVRNTSDRTVIL
>NZ_CP048019.1|WP_063504663.1|283636_284542_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVIITQHAKLSYSAHAMIVQTNDGINQIPVDDVSLLLISTTQAVITTALISELSKKNVKIVFTDEAREPISEIYGYYPANRTAQLLREQVNWDLQLQQILWTKLVANKIINQINVLNLLDHSTDELVMELEKLELNDLTNREAVVAHKYFPLLFESGFTRRDGSVINAALNYGYSILLSAVNQEIVANGYVTYLGIHHDSEENQFNLASDLMEPFRPVVDCWVANQKFNQLTPDIKYGLVELLSLELKYNGKKTILRNAITEHVRNCLKYLAGKANSFTIEMELSDEVPNNAINDNV
>NZ_CP048019.1|WP_162013234.1|284759_288860_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MGDRKYNLGLDIGTSSIGFAAVDENNQPIRVKGKTAIGVRLFEEGKTAADRRGFRTTRRRLSRRRWRINLLNEIFDAHLAEVDPTFLARLKESNRSNLDPKKSFQGSLLFPERKDYQFYEEYPTIYHLRKALMEKDRKFDIREIYLAVHHIIKYRGNFLNGTPMRSFKVENIELDTLFDQLNQLYAEIVPDNELAFDLAQVADVKEVFSSTTIYKMDKKKQLVKMMLLPASNKALQSENKKIVTQFVNAILNYKFKLDVLLQVETDTDWSLKLNDEGADDKLEEFTGDLDENRLEIVDLLQRLHNWFSLNEITKDGNSLSAAMVEKYENHHHHLGLLKKVIENHPDAKKAKALKETYTAYVGKTDDKTQNQDDFYKAVEKNLDDSPDAKEIKRLIQLDQFMPKQRTGQNGAIPHQLHQQELDQIIEKQSKYYPFLAEPNPNVKRHKDAPYKLDELIAFKIPYYVGPLVTPEEQAQNKENVFAWMKRKAAGPITPWNFDEKVDRMESANRFIRRMTTKDTYLFGEDVLPAESMIYQKFVVLNELNNLKINGRHLSLKDKQDVYNDLFKQQKTVSIKALQNYYVTKKKAATAPTVGGLADPKKFLSSLSTYIDFKNMFGERVNDPQFQEDLEQIVEWSTIFEDRGIFKAKLQALGWLSEKQIQQLVAKRYKGWGRLSKKLLTGLKNAEGYSILDEMWRSTENFMQIQSRPEFAALIQQANEKQFEGNDPDNVWENIENILGDAYTSPQNKKAIRQVVKVVQDIEKAVGNPPEKIAIEFTREAAANPQRTQSRLRTLEKLYESAEEVVDAGLTAELAEFKENKHVLSDKYYLYFTQLGRDVYTGDTISLDKLNDYDVDHILPQSFIKDDSLDNRVLTIRAVNNGKSDNVPAKMFGKKMGSFWRYLLDNGMISKRKYNNLITDPDNISKYAQKGFINRQLVETSQVIKLTANILNGIYDKDTEIIEVPAKMNSQMRKMFDLVKVREVNDYHHAFDAYLTIFIGNYLYKCYPKLQPYFVYGKFKKFSDNEDIEVGDGRFNFLNRIERLKNVTDPETGEILWSNVAPNETIKQIKKVYNYKFMIVSREITTRRAELFNQTVYPKNYRGKLIPIKEDRPTDLYGGYSGNTDAYLAIVALEDKKKGKYFKVVGIPTRAAAKLEKLKQQDSQQYLQALHEVIAPQFTKSTKKGIKKTEFEIVLDKVHYRQLVQDGPVKMMLGSSTYKYNAKQLVLSEKALQVIADDRKFDETQKDDNLIAVYDEILSIVDQSFDLYDINGFRKKLNDNRDQFIDLPAETKYEGRKVVAHGKREMILEILKGLHANASFGNLKPIGFATPFGQMQAQNGIELSENTVLIHQSPSGLFEHKIKLSDL
>NZ_CP048019.1|WP_063504664.1|289043_289625_+|hypothetical-protein
MKKIASIAILAVLPLTLASCGNHSTSSSDTSSNSSKTEKVAKSSSKSSASKDAKSSSADKATSSSASANSSKDSTNSNSSSNSNSASSSTSSATNSSSSADNQMSRSDLTKAEKKNGNRPLADEKIQNEQAAVALLTEKYGNQNWKVAFSSIGKSSPIYFHITSPKHGSYYVYANGDVQSADGDLSNHQIVNK
>NZ_CP048019.1|WP_063504827.1|289851_292386_-|M1-family-metallopeptidase
MANIERFYTKFHPTSYQIKLAISRETKEIKGTTTITGEALSSQIDIHQKDLQIEELRVDGTAGDFTVDQAAEAIHVKLPQTGTVTLKIKYTTKLTDTMMGIYPSYYEVNGETKQLVGTQFETTFARQAFPCVDEPEAKATFDLAIKFDEHPGEVVLSNMPETKVEDGYHYFERTVKMSTYLIAFAFGDLQSKQTKTKSGVQVGVFATKAHQPQELDFALDIAKRAIEFYEDFYQTPYPLPHSWQLALPDFSAGAMENWGLVTYREAYLLLDPKNTTLRTKQVVATVIAHELAHQWFGDLVTMQWWDDLWLNESFANMMEYVAVDALEPDWQIWELFQNSEAGAALQRDATDGVQSVHVQVNDPAEIDALFDGAIVYAKGARMLVMVRALIGDDALRQGLQKYFASHQYGNATGNDLWQALGEAANMPIGDIMHTWLDQPGYPVVTAQVENGDLVLEQQQFFIGEGQDQQRQWQIPLNGSYAEVPDLLQTKTLNLGNYQDLRDRNQQPFRLNVGNSSHFIVRYDQRLLDDILADWEQLTAIDQLQLLQDLRLLAEGKQISYAEIVPLLPRFAKTDSALVTEMLYRVANDLKKFVAPQSSAEKQLKKFFGELSQAPAQRLGWQAAASETNDDQLMRPMVLKAALYAENPAVTAQAHQLFEENEAQLPKLPAAIRSLVIRNEVEHFGSPELFARLLKEYQRTSDASYKSDLCQALTATPSLPLIQQLVQQFENAQVIKPQDLRAWFRGVLANPQGQGPAWNWIRDEWQWLEDTVGGDMEFATYITVIAGIFQTPTRLAEFKAFFEPKLATPGLTREITMDIKVIETRVALIETERDAVQAAVAQAIK
>NZ_CP048019.1|WP_005916102.1|292412_293822_-|MFS-transporter
MEAQNTRHTNPMIVVAVVALMSFMGILTETSMNVTFPALMKEFHVPLNTVQWVTAGYLLMAALVMLTSAYMKRRFTNRQLFTAAAILFSSGDLICGLATNFWVLLAGRLIQAGCVGLCTPLMVNIILDVVPQHKLGTYIGMANLIILIAPALGPTFGGAVVAFNSWRMIFWSTLPVALVLMLLGMKVIKQYAPTDQHYAFDWTRFLLLGMALVSLIVGLNALGEMQLGTFVGLLIVSIGLTILFVKRSHTATKALFSLQVFKQPAFLYSFLPYIMLQFANVGINFLLPNYVQDVFQATSLVGGLILLPGSLFNGFGQPLYGWLLDRFGGKVPLYTGDILFTLALVGLMCWGPQLGVVGITIAYLIFAIGRSMAFGNSVAYGLKHIDKEFQNDANALYNTGQQVTGAIGTTVLALLMGSVKRPGYTHAQNVSAGSQLAFILLVIFGCVIFVFFHHLVNLKNLPEDKGVDL
>NZ_CP048019.1|WP_063504828.1|294014_294659_-|SDR-family-oxidoreductase
MAKIFIAGGSGRVATALIKNLVADGNEVVAGARHPENVVEMDHVNTVKLDLHDGVDAIADLMKGSDAVYFTAGSRGADLLQTDAMGAVKTMQAAEKLGIKRYVMLSSLYTLESERKWHEGGLADLLDYTTAKFFADNYLVHDTDLDYTIVQPTSLTEEAGTGQIYIGKELPQKTNPIPDVARVLADVLKQPNTVKKVFMMSSGSQAIDQALANV
>NZ_CP048019.1|WP_162013235.1|295056_296259_-|site-specific-integrase
MAKTKYRGVYSEGDKFYYVAALGFDAETGKRIQKKSRRSRDGKPFTSARAAYKELTALKNAYFEQNGFANYRISYGTFMKQSYLPAYKTNVEASTYSDRITVYNKLIERFGKLKMREISILDCENFRNYLLNESGWSQGYCHLIYGAFRQTLEYAVKVGFLDSNVSKKTKAIPKGKSIVPFWSKNQFERVISSICLDSFYEHLCFIVLWIYFMTGIRVGEGQALTWDDIDFENSKMSIHHTLDFKSKDHYEIKGYTKTQNGMRTISLDGDTCALLKKWKATQEAQGVANFIISYDSRPIGRYTIARIIKRYAKLAKVPEIQAKGLRHSHVSYLINEFNADVLTVSRRLGHSSPEITLKYYAHLWSRNDEALADKMSGNVQVAFAEKSLVNFNGNQAVKNN
>NZ_CP048019.1|WP_162013236.1|296260_296461_-|DUF3173-domain-containing-protein
MNKIMVSSKDLENMGFKPNQAVLIIKRAKIKLIKQGLELYNNKRVGVVPRKVVEDIIGVSLSAGDK

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Crispr_ID: NZ_CP048019_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048019_3

1064365-1064513

Orphan

Consensus_repeat	Method
AATTTGGTTAGCCGGAGAGAGCTGGGTTACAAAACCCGTTTCGACTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048019_3

>merge|NZ_CP048019|3|1064365-1064513|CRISPRCasFinder
AATTTGGTTAGCCGGAGAGAGCTGGGTTACAAAACCCGTTTCGACTACGCGGCAGAAAAGCGCGGAATTGGGGACTAATTGCGGATTTGGCAATTGGTCCCCAATTTGGTTAGCCGGAGAGAGATGGGTTACAAAACCCGTTTCGACTA

>NZ_CP048019|3|3|1064365-1064513|CRISPRCasFinder
AATTTGGTTAGCCGGAGAGAGCTGGGTTACAAAACCCGTTTCGACTA	CGCGGCAGAAAAGCGCGGAATTGGGGACTAATTGCGGATTTGGCAATTGGTCCCC
AATTTGGTTAGCCGGAGAGAGATGGGTTACAAAACCCGTTTCGACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048019.1\|WP_002829698.1\|1061741_1061984_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltC	unknown	unknown	gnl\|CDD\|179929
NZ_CP048019.1\|WP_081219216.1\|1061994_1063263_+\|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD	unknown	unknown	gnl\|CDD\|274975
NZ_CP048019.1\|WP_002832437.1\|1056142_1056595_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP048019.1\|WP_063504447.1\|1067990_1068599_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP048019.1\|WP_002832425.1\|1067485_1067731_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_002832422.1\|1071433_1072459_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP048019.1\|WP_002832434.1\|1058022_1058547_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NZ_CP048019.1\|WP_004166176.1\|1072510_1072720_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_087115922.1\|1060522_1061725_+\|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltB	unknown	unknown	gnl\|CDD\|274974
NZ_CP048019.1\|WP_063504450.1\|1058996_1060523_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA	unknown	unknown	gnl\|CDD\|235313
NZ_CP048019.1\|WP_036685483.1\|1058832_1058982_+\|teichoic-acid-D-Ala-incorporation-associated-protein-DltX	unknown	unknown	gnl\|CDD\|372124
NZ_CP048019.1\|WP_002832423.1\|1068617_1069958_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
NZ_CP048019.1\|WP_004166185.1\|1054512_1055991_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP048019.1\|WP_002829714.1\|1070717_1071245_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_002832429.1\|1063449_1064280_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|376838
NZ_CP048019.1\|WP_063504446.1\|1073123_1073936_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
NZ_CP048019.1\|WP_063504451.1\|1056898_1057480_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|226129
NZ_CP048019.1\|WP_002829713.1\|1070030_1070573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_002832426.1\|1066734_1067373_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
NZ_CP048019.1\|WP_063504448.1\|1064616_1066476_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|379196

Protein	Function_ID	Function_description	E-value
NZ_CP048019.1\|WP_002829698.1\|1061741_1061984_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltC	gnl\|CDD\|179929	PRK05087, PRK05087, D-alanine--poly(phosphoribitol) ligase subunit DltC.	3.20079e-34
NZ_CP048019.1\|WP_081219216.1\|1061994_1063263_+\|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD	gnl\|CDD\|274975	TIGR04092, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltD. Members of this protein family are DltD, part of the DltABCD system widely distributed in the Firmicutes for D-alanylation of lipoteichoic acids. The most common form of LTA, as in Staphylococcus aureus, has a backbone of polyglycerolphosphate.	1.83964e-165
NZ_CP048019.1\|WP_002832437.1\|1056142_1056595_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	6.12786e-27
NZ_CP048019.1\|WP_063504447.1\|1067990_1068599_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.51928e-11
NZ_CP048019.1\|WP_002832422.1\|1071433_1072459_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.98087e-36
NZ_CP048019.1\|WP_002832434.1\|1058022_1058547_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	3.59797e-30
NZ_CP048019.1\|WP_087115922.1\|1060522_1061725_+\|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltB	gnl\|CDD\|274974	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB. Members of this protein family are DltB, part of a four-gene operon for D-alanyl-lipoteichoic acid biosynthesis that is present in the vast majority of low-GC Gram-positive organisms. This protein may be involved in transport of D-alanine across the plasma membrane. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP048019.1\|WP_063504450.1\|1058996_1060523_+\|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA	gnl\|CDD\|235313	PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit DltA.	0
NZ_CP048019.1\|WP_036685483.1\|1058832_1058982_+\|teichoic-acid-D-Ala-incorporation-associated-protein-DltX	gnl\|CDD\|372124	pfam12459, DUF3687, D-Ala-teichoic acid biosynthesis protein. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important.	1.6936e-12
NZ_CP048019.1\|WP_002832423.1\|1068617_1069958_+\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.02441e-118
NZ_CP048019.1\|WP_004166185.1\|1054512_1055991_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.08977e-109
NZ_CP048019.1\|WP_002832429.1\|1063449_1064280_+\|YitT-family-protein	gnl\|CDD\|376838	pfam02588, YitT_membrane, Uncharacterized 5xTM membrane BCR, YitT family COG1284. This is probably a bacterial ABC transporter permease (personal obs:Yeats C).	3.3418e-43
NZ_CP048019.1\|WP_063504446.1\|1073123_1073936_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	1.93617e-118
NZ_CP048019.1\|WP_063504451.1\|1056898_1057480_+\|ECF-transporter-S-component	gnl\|CDD\|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	4.9495e-32
NZ_CP048019.1\|WP_002832426.1\|1066734_1067373_+\|HAD-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	2.09444e-44
NZ_CP048019.1\|WP_063504448.1\|1064616_1066476_-\|oxidoreductase	gnl\|CDD\|379196	pfam13454, NAD_binding_9, FAD-NAD(P)-binding.	4.34386e-31

>NZ_CP048019.1|WP_002832429.1|1063449_1064280_+|YitT-family-protein
MREKSFRLVSQFAIMLVALEVLAISINMFYAPHNVAAGGATGISILLEDAFGWNRALIVFIINVAMLIASYFTLGKQTTARITVGSLLLPVCMAVTPSLSLVSDRTLAVIVGGALYAIGVALLYQIDASSGGTTVPPLILKKYFNFKTSVSLLVLDTIVCLMNIFSSGMEAFILALFSSVITLLVMNYIETGIDRKKSVYIMSSRLSEVEEIISESLDQSYTSLNVQGGFSGDNRRMLMLVVENAEYHRIIERIREIDPKAFILTTNVAEIHGGQY
>NZ_CP048019.1|WP_081219216.1|1061994_1063263_+|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltD
MIFGPVLAAALILIGLLFSPFKINKINSAVEQKAATALSPDTLKGDAVKRAALENGNYVPFFGSSELSRFDLAHPSVMAEKYDWDFRPFLLGAPGTQSLTHYFEMQGINPQLKNKKAVFVISPQWFVRKGADPHAFAFYFSQLQAVNFLENQTGKPSERYAAKRLLTMLDDRSNSTNRQVINALERVANGQQVTSGQRTYLKYYKRLLAHEDQLFSPLNLQGTNQDHINRQVEALPNSPSDGMIQQALTRQAKRQTSNNQFGIQNQFYNKRLKKRIAAFEGMQKHYDYTRSPEFADFQLILDQFAKNHTQVLFIIPPVNQKWADYVGLSQEMLRGFDKKINYQLQSQGFNQILDLSRDGGKKYFMQDTIHLGWYGWYVVDQNVKNFVDQPSQSTHYQIKHQFFDEDWQQLKPSDLKTYIKNN
>NZ_CP048019.1|WP_002829698.1|1061741_1061984_+|D-alanine--poly(phosphoribitol)-ligase-subunit-DltC
MDVKETVLNILTDLIGTDVSNSMDDNLFDAGLLDSMGTVQLLLQLQTELGIEVPVSEFERSEWDTPNKIIAKVKELQARG
>NZ_CP048019.1|WP_087115922.1|1060522_1061725_+|D-alanyl-lipoteichoic-acid-biosynthesis-protein-DltB
MWTATPYENPTYFFMLAIALVPIVIGMLRGRRFHWYELLVSFFFLLLTFGGPKWQQGIALIGYLIFQVILVSLYNRYRKQHNATGVFVGAVILAILPLAVVKMTPLLQSGNSSLIGFLGISYLTFKAVQTIMEIRDGVLKDYDPWFFLQFLAFFPTISSGPIDRYRRFKKDYLNVPERGHYLDLLEKGVHYLFLGFVYKFMLSYVFGSLLLPRVQHIALQTDGLSWGLLGVMYVYSFYLFFDFAGYSLFAVAISYFMGVETPMNFKQPFKSHNIKEFWNRWHITLSFWFRDYVYMRLVFFFMKHKTFKSPKTTANVTYVLNMLLMGFWHGETWYYILYGLIHGVALVINDWWLGFKKKNPGRLPHNRWTEALSIFITFNFVCFTFLVFSGFLDKLFFVKY
>NZ_CP048019.1|WP_063504450.1|1058996_1060523_+|D-alanine--poly(phosphoribitol)-ligase-subunit-DltA
MQKVTNVIEKIDSIAQEHPDWIAYDYLGNTHTYGELKAFSDNLAAYILEQNIMEQAPIMIYGGQTFEMVAAFLGAVKSGHAYVPIDRHSNPERLTMINEIAHPGMCIAIEDLPVSLDDLPILEGQELSDVFADSQSVELDQAVTGDENYYIIFTSGTTGKPKGVQISHNNLLSFVNWQMDQFDLPDSPVTLSQPPYSFDLSVMDLYATLVLGGTLKAVPKTVTDNFKELFEILPTLGLNVWVSTPSFMDVCLLQPTFDADHYPALSRFLFCGEELSHATAQALKQRFPEARIFNTYGPTESTVAVSAIEITDAVLEQNDRLPIGRLKPDMGGFIIDMDNNVVKAGNEGELVIYGPAVSKGYINNPTKTNEVFFKYEGHPAYKTGDLVVMDQDGILYYRGRTDFQIKLHGYRIELEEVNHYLNNDPLIKAGIAVPKYGKDQKVAQLVAYVIPATDEYDSQIKLTVAIKDSLKANMMEYMVPNRFIFVEELPQTANGKIDIKSMIARVNS
>NZ_CP048019.1|WP_036685483.1|1058832_1058982_+|teichoic-acid-D-Ala-incorporation-associated-protein-DltX
MIGFLKNLWQHDSVKFITRTVFYFLVFVILLYLYGYSGMSGGTFIYNEF
>NZ_CP048019.1|WP_002832434.1|1058022_1058547_+|biotin-transporter-BioY
MRLDARNITKMALLLAIIIGLGLVPNLPIGLIPVPITVQNIGILLVGLILTPGEAAITIGAFLLLALVGIPVLTGMRGGVAVFMGPTGGYLLGYLVGAVLLAWWTSHGRQDWFGLFAKVAIIAVLVIDLLGIVGFAINMRMAFFKAVLANAIFIPGDVIKSALVALIGRRLKIK
>NZ_CP048019.1|WP_063504451.1|1056898_1057480_+|ECF-transporter-S-component
MSVSKVNKMVIVAMLAAISFVLIFIDFPILPGFSFLKIDFADVPVLIGTVLFGPVWGMATAGLAGLLDIIVRDSNPAGALGAVANWMAAVAYILPIYSFLKRAEDQPHHQAVMALVKGVLLGTALMTVVMSVANLFVLLPLYMKLASFQINISTLNMVLYGILPFNILKGIIVGAVIGLLYFRLMPIVRRGEK
>NZ_CP048019.1|WP_002832437.1|1056142_1056595_+|MerR-family-transcriptional-regulator
MGNPSDRVDMLKRIIASESLLLSIGDVAKAIDVSPRQLRYWEKKGYVKTNVSESGQRKYTYPALIQAGNIAHYLNKGYTLAMAAKKAENNRKLMKMLRIFLQSRVNKGYEIENGYEIDLGEVKNLPAEEHLLIDVMQDGESYFKIKKTND
>NZ_CP048019.1|WP_004166185.1|1054512_1055991_-|multidrug-efflux-MFS-transporter
MTQAFDAHGKPYKRSLLILVLLIGSFCTVLNQTILTTAFPTLMKAFDISTSTVQWLTTGFLMVNGIMIPISAWLTSRIPSKRLYLSAMTIFLIGTTFCYVAPSFSVLLAGRLIQALGVGITMPLLQTMMLTIFPANQRGSAMGLAGLVVGVAPAIGPTLSGWVIDNYHWRTLFGMIIPIVIVVLIAGFFFMKDVLKTEHTQLDWISAALSTIGFGSLLFGFSEVGDKGWTDSLVVATLIIGAIFVILFGARQLRSKNPFLDLRVLKIPEFSISATLSSVSMIAMVGAEMVLPLYIQTVRGESAFHSGLTLLPGALMMGVLSPITGRLFDRIGARRLATTGMFLLTIGTLPFAFITRTTPMLYIIVLYAIRMAGISMAMMPVTTAGMNSLPFDKMGHGTAVNNTLRQVASSMGTAILVSVLTNVTNNQMPAKHLLKAEPLAYKDQAFNATISGYHASFWIAVAFSALGLIIAFFVSNRSGSSAEVQPQAGGEK
>NZ_CP048019.1|WP_063504448.1|1064616_1066476_-|oxidoreductase
MKIALIGAGPRNLMALERLVCWGISTNYSANVEISLFDPFGIGGRVWNPDQNHELKMNSLAEKITLFTDQSIEMAGPVHEGPSLLDWALANGRSFIEEHQYHHQKLLLNELANLNKHSYSSRALFGIYQQWFYEQIINHLPDNFSVIPRSEWVTNVKKDAQQYTVITQDAAYNVDVVSAALGEGNNPLSKEERQLQDFAAAHQLKYVPIAYPAEMDVDDVAASDHVIIRGLGLSFIDYLAELTERRGGTFHRDEHGNLTYTRSGDEPTIYASSRRGLPYHARGLDQKAVGETFPRYFLSDQYVDDLVRQHQVISGEEFINRIQWDVELTYYVTLAQNSYPEIDLSAFEADLAASTKGFKKILDNYGIAAKDRLNWEEWKNPIPKDVNDAASFTQFIKTYLQQDVDLANEGNLTAPFTSAIEKLRELRTNIRKVVTYRLISADDYVEQVLKHFNSLNSFLAVGPPAFRIEQILALIKSGILTLIGPDMRVETSDDQFMTYSNRLADHQQYFGNVLIEGRLPQPNAANNTNPLVNNLLQQGLARIFTLQLRDGSSYQTGALDVTDDTAELIDQNGNVVPHFFVWGLPTEKRHWLTNGAPIPGVNDVRLRIADRIAAQIFAK
>NZ_CP048019.1|WP_002832426.1|1066734_1067373_+|HAD-family-hydrolase
MYKVVLFDLDNTLLKTEDASVAALSYALKQDGVTVTPEAIISLMGIPGLEMAKQLGAPNPEKTIAIFNEQIGKEVDLIKPYDGIGAMFTGLHELGVEYGIVTSKLKRVFDDEMKHFPKIQQIKRVVFSDDTQKHKPNPDPILFGIKKYFAEMDLKDVLYVGDSLFDMQAAHAAGVDFANAGWGAIPTNDFSEAEYVLQKPEQLLDIVQRSRK
>NZ_CP048019.1|WP_002832425.1|1067485_1067731_-|hypothetical-protein
MIINDPNMREYLEVQLIGHENNKIKARTRTGEYIFVYPTARQARDPLFWQCLKDIINNKLWLPITKQFHHLLENDWLVPSM
>NZ_CP048019.1|WP_063504447.1|1067990_1068599_+|CPBP-family-intramembrane-metalloprotease
MDQVISLPQIAAMHIHDTHPVVHVLLVVVYTLTTLAVVIFLVQFYRYKVRKNHSDFANYPLNSKRFRIMLLMVGLWFIFMLLQTWYVTYFNIGTSENQSAIEQLLRDTPIWTWVDAVLVAPVIEELIFRGLFFEFFFTKDSRLVRIIGVVVNGVLFGGLHDLGASFPIYAIMGMLLAITYLWTKDIKYSITLHIINNFISFL
>NZ_CP048019.1|WP_002832423.1|1068617_1069958_+|MATE-family-efflux-transporter
MDSILTKGSPIKGIILFSIPLLLGNIFQQIYTLSDTLIVGRVVGVQALAAVGATSGLTFLIIGFAQGMTTGLSIITAQHYGAGDLRAVKQSFATSIWICGGLVLLLTPLSVWATRPLLRLMQTPANIIDGAAIFLSIIFGGLVATMFFNLFSNMLRALGNSRLPLIFLVIACIINVVLDIILIVFMHVGIAGAGIATVTAQLISCFLCWFYIKARVPALSLEWREITTNWTLIKEQIRIGLPMGFQASIIAIGSIILQISLNHLGSSAIAAYTAAGKVDQLATQPMMSLGITMATFTAQNFGAKQYKRILKGIRQALTTSISYGFVMGILIILNSRTLVNLFIGNSEQHITNLAHQYFVIVSMSYFLLAILFIVRYTLQGFGKSMAPTLAGVAELLSRMLVGIWVVPAFGFIGACTANPLAWLGSNLVLIWSYVQVVRQLRREPEA
>NZ_CP048019.1|WP_002829713.1|1070030_1070573_+|hypothetical-protein
MIFTYDVLKDVISTGKPIIINEQSQIQKLMADKIAAIKFVSKIKNEHEYYCFLELNPGKGIVFSSDGNTFDGFSVFQIPLSEFYFDVDVDKGIIGIEDGVGNETDFLDLFTGPSIGEFSRKYHHASDEEIMHGNTYEMTDRYLGDYLGFEGEDAQKLNLTLLRFLMAVYFDQNPASKPVK
>NZ_CP048019.1|WP_002829714.1|1070717_1071245_+|hypothetical-protein
MIFKYDVLSKVMQEDKTIEINKDSCIKKIAGLNGVEYDVRSSNRHDYFVFLPLNDDEGLVISTDNHTELGFELLRTPKKEFFLSINTNINLVDYYDGPGTQTDFPDVLEQEELDQNYNHCYGASDQALKETKLYQQVDNCVSKYLRVDAKLEEKLNLVIMRLAFLAHSQRQHAVA
>NZ_CP048019.1|WP_002832422.1|1071433_1072459_-|ROK-family-protein
MITDVEIVLKLCIINVHEGMIMMNNTEQLSIAVNESAIRYALFSDQGELKVRKSVPTPTDNIDNFLKAIYHIVEENQKNIYGIGISVPGQVDQADGIIYQGGSLPLLHGLSLGKIIAARYDLPVAMQSVGICAATAAHWNGNLRNIHNGAALILDDGVGAGIILNDRIFTGNHLEAGALGMILANPQTDNPSPSQIMFNACSATKMVQKIGNVLQLSDPNDDTKVFKAIENGEANARELFNEYCRNVAYMIANTQAVLDLNKYVICGRISTQSILVPEINHQLQVIRDSFSLLKETLHMPNVETSVFKQDTDLYGAYYFALSQFDFKKLQEDAAQDTSLPN
>NZ_CP048019.1|WP_004166176.1|1072510_1072720_-|hypothetical-protein
MKEVRLMGHGSQFLKKILIIYIVANLIVMALKAFTPLGQNSIFNLLAFVILSIFTVYLLYLLIKMGKKL
>NZ_CP048019.1|WP_063504446.1|1073123_1073936_-|sugar-phosphatase
MSIKLVAIDLDGTLLNDNKQLTEENIAAINAASKMGVNIVLCTGRPITGIQRYLAQLELQNEREYAITYNGGLVQTINGEILIKHTLSFQDYLAAEAFSRQVGVHFHVDGKNHIYTANKNISPYTVGESFLVEMGLRYRSVEEMSPDLEMPKVMFIDDPKVLSKARDQIFNRFQDEFSVVQSEPYFIELMPKNVSKGNAVKELAERLHLSLDQVMAIGDQGNDLSMIKTAGIGVAMENGIDEVKENAQFITANNNESGVAKAIRKFVINK

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Crispr_ID: NZ_CP048019_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048019_4

1566692-1566778

Orphan

Consensus_repeat	Method
TTACAAGACACAGACTGCTGACTTGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048019_4

>merge|NZ_CP048019|4|1566692-1566778|CRISPRCasFinder
TTACAAGACACAGACTGCTGACTTGATCGGGTCAAAAGTTGATAATGGTGACTTCTCAACTTACAAGACACAGACTGCTGACTTGAT

>NZ_CP048019|4|4|1566692-1566778|CRISPRCasFinder
TTACAAGACACAGACTGCTGACTTGAT	CGGGTCAAAAGTTGATAATGGTGACTTCTCAAC
TTACAAGACACAGACTGCTGACTTGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048019.1\|WP_002831803.1\|1555371_1555779_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273775
NZ_CP048019.1\|WP_162013342.1\|1555778_1556159_+\|DUF806-family-protein	unknown	unknown	gnl\|CDD\|368546
NZ_CP048019.1\|WP_002830380.1\|1575275_1575914_+\|carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|239398
NZ_CP048019.1\|WP_002830379.1\|1577478_1577745_-\|membrane-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_162013377.1\|1570904_1571270_+\|holin	unknown	unknown	gnl\|CDD\|377377
NZ_CP048019.1\|WP_053906569.1\|1576596_1577019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_162013344.1\|1557573_1562028_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381605
NZ_CP048019.1\|WP_002830382.1\|1573762_1574872_+\|L-lactate-oxidase	unknown	unknown	gnl\|CDD\|240088
NZ_CP048019.1\|WP_086131892.1\|1568682_1568922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_002830702.1\|1571730_1572513_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP048019.1\|WP_002831807.1\|1554699_1555032_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP048019.1\|WP_162013346.1\|1563937_1566322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273743
NZ_CP048019.1\|WP_002831799.1\|1556938_1557313_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|311073
NZ_CP048019.1\|WP_002831805.1\|1555021_1555369_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|377521
NZ_CP048019.1\|WP_002831786.1\|1570625_1570889_+\|holin	unknown	unknown	gnl\|CDD\|371241
NZ_CP048019.1\|WP_002831790.1\|1569070_1569430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048019.1\|WP_162013343.1\|1556172_1556862_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|309671
NZ_CP048019.1\|WP_162013345.1\|1562104_1563874_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|368574
NZ_CP048019.1\|WP_162013348.1\|1569441_1570626_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|119377
NZ_CP048019.1\|WP_159207769.1\|1557357_1557543_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP048019.1\|WP_002831803.1\|1555371_1555779_+\|hypothetical-protein	gnl\|CDD\|273775	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family. This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions].	0.000200164
NZ_CP048019.1\|WP_162013342.1\|1555778_1556159_+\|DUF806-family-protein	gnl\|CDD\|368546	pfam05657, DUF806, Protein of unknown function (DUF806). This family consists of several Siphovirus and Lactococcus proteins of unknown function. The viral sequences are thought to be tail component proteins.	5.63212e-56
NZ_CP048019.1\|WP_002830380.1\|1575275_1575914_+\|carbonic-anhydrase-family-protein	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	6.32745e-59
NZ_CP048019.1\|WP_162013377.1\|1570904_1571270_+\|holin	gnl\|CDD\|377377	pfam04531, Phage_holin_1, Bacteriophage holin. This family of holins is found in several staphylococcal and streptococcal bacteriophages. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis.	1.58872e-07
NZ_CP048019.1\|WP_162013344.1\|1557573_1562028_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.51483e-39
NZ_CP048019.1\|WP_002830382.1\|1573762_1574872_+\|L-lactate-oxidase	gnl\|CDD\|240088	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).	0
NZ_CP048019.1\|WP_002830702.1\|1571730_1572513_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	8.65751e-132
NZ_CP048019.1\|WP_002831807.1\|1554699_1555032_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	6.85588e-21
NZ_CP048019.1\|WP_162013346.1\|1563937_1566322_+\|hypothetical-protein	gnl\|CDD\|273743	TIGR01665, structural_protein, phage minor structural protein, N-terminal region. This model represents the conserved N-terminal region, typically from about residue 25 to about residue 350, of a family of uncharacterized phage proteins 500 to 1700 residues in length. [Mobile and extrachromosomal element functions, Prophage functions].	3.85315e-14
NZ_CP048019.1\|WP_002831799.1\|1556938_1557313_+\|hypothetical-protein	gnl\|CDD\|311073	pfam06896, Phage_TAC_3, Phage tail assembly chaperone proteins, TAC. This is a family of phage tail tube assembly chaperone proteins from some Siphoviridae viruses.	8.67198e-35
NZ_CP048019.1\|WP_002831805.1\|1555021_1555369_+\|phage-head-closure-protein	gnl\|CDD\|377521	pfam05521, Phage_H_T_join, Phage head-tail joining protein.	2.96167e-08
NZ_CP048019.1\|WP_002831786.1\|1570625_1570889_+\|holin	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	2.69718e-08
NZ_CP048019.1\|WP_162013343.1\|1556172_1556862_+\|phage-tail-protein	gnl\|CDD\|309671	pfam04630, Phage_TTP_1, Phage tail tube protein. This is a family of phage tail tube proteins from Myoviridae.	9.18115e-78
NZ_CP048019.1\|WP_162013345.1\|1562104_1563874_+\|phage-tail-protein	gnl\|CDD\|368574	pfam05709, Sipho_tail, Phage tail protein. This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function.	2.12027e-05
NZ_CP048019.1\|WP_162013348.1\|1569441_1570626_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|119377	cd06415, GH25_Cpl1-like, Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase activity. The Cpl-7 lysin is also included here as is LysB of Lactococcus phage, and the Mur lysin of Lactobacillus phage.	1.28859e-64

>NZ_CP048019.1|WP_162013346.1|1563937_1566322_+|hypothetical-protein
MALKNQYLILDSNLKRIGTLTVDGATKFSNDSVKIQLADADTTSTSYDDDANVGTQDNFNGTINLNAQSKKFDHQGSLDVLQGQPDSDKVVAGNNLAYYDELSGHWYVMRIYSVEESNTAATKHVTTANFTNLCLYTLAHHYPVAITASVSSIQTAFNQCFNATGWTLDYQTTNVMTPSITIDGKTKASTLVQTLIQTYNVEIDPYVEIDSQGNITKKVCVITDQLNADKVYNEAVFGKNMTSLKRTTVSNPITKLIPYGANGNTIALVNDGKSYIVDDEANQKYNPDWQSGLYYEGVITANSIENPAGLKVWAEEMLQLYNHPRTYYEVNVTPNFNPPLGATIRFKDELIKPVLDASGRVIQRTISFANPYGNTVGFGEYVTVPVATPAWMQGYQSAINSALEKAKEDASSVKPVALTPDGNNFTDTTQTKRLILQAWEGNTNISAYIDNKGFIWHRYNTDGTLDTSFNQTGYLVQAAYSSVGTLHGTIETRYIQNEPEIKLQTSAIRNLGSFNPDNSTLGITDAAQYMCPLSNGQYITSRAINQSTTGDVMFVLHDTDFKPISKMIISHGGHGSSFSIEEVNGAIYIWSATKPNLNVNEYAISRIPYLANVTLGNDDDRITRFCTVDRYIRVSVDFKHGYLLCGYFNGKQDVLRLDEVKQGNYNVLYSIDIANYGFNMDRQTYQSQGIDFPYVYFHSGDYNMKDPRMVYAVNVVHGGQEFASNYLLDMDLGLTDDVIEPETCNIIYSQTNQPELLVTFNCRHQGNHLERVFVIPIKERLPMATKGGELNGRI
>NZ_CP048019.1|WP_162013345.1|1562104_1563874_+|phage-tail-protein
MTLQRDDFEYAGLNSRDDLQVEMGNVVLPSAPAMAEQVTDIPAMYGNQFNGTDFTSRTINIPVSIYCADNQDRFNQVMHNLSGLLLSDDPNDNGKEYPLVFGFEPKVTYWGHITAISDPAPINPGMYDMTLTITFVQSDPRATLPQVEKSLNNGLNTITVDGTARTEPVIQVIPKRDLKYIGFSLNGGQFGLGPESPGDQATAVQPYTKVVDDPLGTMAMWTNDANAISNMKTGETYTYQGHSAIKTSTNVMRPAVTSAGYDFGPIPTTGEDRWYGPAYRYTGMTQSLNDWRVRTGIHQFKYSGTHNGRAMGRVEVLLLDPNGNTIGRFGMRDMAFGAKPMARLQICEPGSTLEYGDRYTDLYYGSGPAGSFTNKPDQKIKIKTGTTTRTVTKYGRSRSGKVTKRTIKETVDTYTTVVNKEEDSALTGAWLVLDITKRGQVFTWSITQYSTATGRPFLDPHIHMLVHGTYVDTQNKYQTPLGGIGSVFLKHPIAEDIYKVPYRNPFMSMTDLQIWKVNKVDTAKPTYIAGAGEEIVMDCETDTVTVNGKLVSPVWSTDFPKLKPGVNGLSMIGDLDDAKMTLKYLPRIL
>NZ_CP048019.1|WP_162013344.1|1557573_1562028_+|transglycosylase-SLT-domain-containing-protein
MAKKVVGREMTSRVSLDSAEAVKSLKQLTAEVKANTSGWKAQETALKSAGEYQKAAAARVDGLAKSMEMQKAKIDELKSRQSGLNRDTKSGEEAYLKLADQINKASRSYDSMGGQLDRAKSKLQYYNSGLADLQKGYKQITAVSESYVKRLEAEGRSAEANKARLSGLKQAYANMEAQYRAQTSELERIKNASGATSDAYKRQQVRVNETATSMAKLKSETNELDSALNKAKPTAFTRMLDSAKSKLGLVREEEKKTNDETKHFAIGAAIGNTISNAASSAIGYIKGVTKQGYELAEAGATIKKQWTNLGLSDSEATKMTAQIGDIRSKANMSGGAIDAMQKKFYAMTNSATKARSMTEVLTSYGSAAGKSGDQIASLTQGVSRLAGSSKVTASLFKRTFSQVPELQKAIIKASGMSTDAFNKQLAAGKITGSQLQGYMVKAAKTSGKAWEEFGDTTKGKMAAIQGTYTNLKVAFAKPLVSGIEKAIDGISEKKGALDNVKKSLTGLVGALGKKTGQYVGDVISFLVKNEKSIEKTGGAFASIVGSLAKGAWSAVAGALKLISGHSKDASKSMQGVASATAAIAKHKTAVENVGKAIMVYLAVSKLRAIGSTISSVAGGIGKVIGTMVRLAKSEKIATAAQWLFNAAMDANPIGIAVVALGALTAGLVLAYKHIKPFRDWVNKAFKSVVNFGKGIAKWGSNVGKSIGQALGNMSKKWNGFKKSFGKSWNSHWNAMGKSLRNSWNSSVKNTRNFFSTVGSKWNGFKNGFRKSWNSHWNTMTSNLHGAWNSSYKHTRDFFSGMGTKWAGWKKSWSRSWNNHWDTMRANLHNYWNKDLSHTRVFGRSMGDWLGGFKKAFSGGWSSLGTGVENIFKGLWSNLKKLARDGMNDVIDLINGGINAVDSVIHAFGGKRKTIGDLGHVHFATGTGVFSGSRNPITRPTMAMLNDGNDSPQTGNKEMVMLPNGDSGIVQGRNTKMLLPAGTEVLSASETAMLMSMQGVTKFAKGTGFFGDILNSVTSGISGVTSWVGKKVGSLEKFFKTAENIIAHPIKSLENLFNWSSKGISGVMSNIGHGLFNGVEKQAKTWWSTLWSMVDLDGAGDASGLLGAVEKYGKGKRYVWGAAGPDEFDCSGLVMYALKHSFGIDFPHFSGAQIAKTQHVSAANAKPGDLIGNNEHIGVYAGNGKYWSAMSPSSHPNIGMSSISSFPGTPIFGRVRGLSNGDDKDASKGVKANGGLEKIIKSQVGSGFWKFISKLADMFGDDGGAVPAGDAVGRWRSDVKKALDTLGLSTSSSMIAKVLRQINTESGGNPKAMGGTDGLADGHAEGLMQVKPGTFSAYHLPGHNNIWNGYDNMLAGLNYAKHRYGSGLSFLGNGHGYENGGIIGRHGLYEIAEHNKPEMVLPLTNKSRANQLISQASQMVNGNNGSQVMPTDSESNKKLDKLISLMSAILGNMGNVQAVIAKSDVVNAVKSDSKTASQYSQMMGY
>NZ_CP048019.1|WP_159207769.1|1557357_1557543_+|hypothetical-protein
MKNQQEDFNLLAQQLLTEGLSPKEFDDSSFYNMMASLNARKKEDRAELVDPLEAINQTYGL
>NZ_CP048019.1|WP_002831799.1|1556938_1557313_+|hypothetical-protein
MKINAKNYFKINKTANVTPTNNIIRLATKVQIGMLESQDTEKEITELDAMKNGLELQDDMADFVQRVMGYTDQQMETINDTVSIERFGEGVGYLIMRLNGISDADIKLSEQKQRKAIKDAKSSK
>NZ_CP048019.1|WP_162013343.1|1556172_1556862_+|phage-tail-protein
MSKHNIVKATFALLDDNGDLIKDATKGLSADEIYVADHNGEGFSQINVTAIEAAGTPGWGNGQIKRTAYGKSMPTLALTALDLDFKINQMLKGYTQNPNTGAWVRQLPKPHVAMIAESQSLDGDISIYECFNNIEFVEEASNNSTDTNNEAAYSTVLNGTVLTPLKPDIFLAANGVQQPYMIAKSNDPNFNLDKLYAETFGGYTKSTGGATGSTTSTTTVVPSSAAPSK
>NZ_CP048019.1|WP_162013342.1|1555778_1556159_+|DUF806-family-protein
MLLPVSQVASLVDSLDLTWLDKVYLNAIPKEDLDNTDSTVILLQETDSSPAYLANSTFKGLAMGVEIQIFYKIDLADDFNPLEAEIALMKSLKDAGWLIVSSQHHTTDPDTNQVTKTIYVTKNEMI
>NZ_CP048019.1|WP_002831803.1|1555371_1555779_+|hypothetical-protein
MAYDDMAKQLDSWLKDVRKLVPNEAEQEKITEVGAKKLADNLTEVTKKKHYSSHKDEKYGHMADNISYNANDIDGEHDGKSIVGWTNKYHDMNARRLNDGTKHIKADHFVDDNLADSEDDVFNAMLDEYKKGGDD
>NZ_CP048019.1|WP_002831805.1|1555021_1555369_+|phage-head-closure-protein
MATNRLTPVDFNQRIEIGTVKTVQNRINGTSKPILDSQFSLYCAPYTRSIASSYQLTSEQLEQVVVIIRHNPKVYEGIQCKYKGKLYDVINDSMDDSSNYLSCDYLTLKRITKGA
>NZ_CP048019.1|WP_002831807.1|1554699_1555032_+|phage-gp6-like-head-tail-connector-protein
MAANLETLKSSLRIDGDDDDKLLTGYLSAATSYIKQAIGDDNSVLGFYEMEGVSDLFETAVYALAGSYWYYRTSITSNAVNPVDLVVDSIIGQLRGLYNQKQDEVNGNGN
>NZ_CP048019.1|WP_086131892.1|1568682_1568922_+|hypothetical-protein
MDKILITNYKPDYTNDIMTISFQINTLGINAQVSITMDDFNAAIAGGAGGADRVKLKVLNTLIDSLTSLKPATTTAKED
>NZ_CP048019.1|WP_002831790.1|1569070_1569430_+|hypothetical-protein
MAKTLSFTDTSPQTVKIGDTTTSFTLICGNDNVATDLTKVTSITVKLGNASGYLKSATVDPASLTEPTTGQIVLALTADLMTGLTAGDYQLEVWVVDSTGTSIYPSESTLQFQINNSLE
>NZ_CP048019.1|WP_162013348.1|1569441_1570626_+|LysM-peptidoglycan-binding-domain-containing-protein
MNKRKLKVLILMVSAIFVAFLMGNVTSQASTSREQGVDWSKFQGNSGVFGYSSDKFVFSQAGGFYGGTNIPQTTYATQVASAKQAGKRVHTYLWDGVGGNMFNAKAMMAYYLPRVKTPKGSIVALDYEDGASDSVTANTNAILAQMKLIKDAGYTPMLYGYKAYLSAHVDVASIVRAHGNCLWLAEYPDYLVRTCPNYNYFPSMNGVAIFQFTSMYKAGGLDGDVDLTGITKSGYTTVSKKQAQTNVKKDVKKAQAAKKAAFKVVKYNQSGVFYPNRTLAVRYTDSDKVSQVATYHKGESVIYNAVIIEHDYVWARYTRSNGLYGFIKLGVTNGPAYGKRVTYQPVSHTYYTVRYGDSWWTIAQRNGLSMTTLASQNGKTIYTTIYPGQRLVVR
>NZ_CP048019.1|WP_002831786.1|1570625_1570889_+|holin
MSQYDDTTKLLMDIQKDVASTKAKVENIEEKMNRVDDIDSKADKALAKSIEIEHEIGRVTQIQNWVIGVLISGVLVTLVVYIAEKFL
>NZ_CP048019.1|WP_162013377.1|1570904_1571270_+|holin
MKKISFKNADGSLNGKLIAGIISLLIVLIQQIFAMCGVKFTGDWSAIVAVINTVLTILGMLGVITDVQTVTSPTVKSDEESQVEATANKVADEIPAPTSAATTVNSSAASDTESASQENQK
>NZ_CP048019.1|WP_002830702.1|1571730_1572513_+|type-I-methionyl-aminopeptidase
MITLKSEREIEGMRKAGAVLAGMHIGLRDVIKPGISSWDIEKFALRYLDEHGAVPEEKGFEGYEYATCVSVNNEVCHGFPRKDLILKEGDLVKVDTVVSVDGYVVDSCWAFAVGEVSDEVKKLMEVTKKALYLGIDQAVEGNRIGDIGHAIQTYVEDEMGYGDVREFVGHGIQPTMHEDPDVPGYGKAGHGPRLRNGMTITIEPMVNTGSWQCDTSAPDGWTVTTMDGSLSCQYEHTLVVTPDGPKILTSQDPVGDAKYL
>NZ_CP048019.1|WP_002830382.1|1573762_1574872_+|L-lactate-oxidase
MTMINGYEQSDREEKIDILNLESLEKQAEKIIPAGGFGYIAGGSEDEWTLKQNRMAFHHRQIAPKALSGIEKPELNTEIFGIPLNTPVMMAPAAAQGLAHSQGEKDTARGLAAVGGLMAQSTYSSVSIAETAAAGGDAPQFFQLYMSKDWNFNESLLDEAKKANVKAIILTVDATVDGYREADIKNKFTFPLPMANLIKFSEGNGQGKGIEEIYASAAQNIRPEDVKRIADYTNLPVIVKGIQTPEDAIRAIDAGAAGIYVSNHGGRQLNGGPASFDVLEDIATAVNKQVPIIFDSGVRRGSDVFKALASGADLVALGRPVIYGLALGGAKGVQSVFEHLNHELEIVMQLAGTKTIEDVKNNSLLNIKY
>NZ_CP048019.1|WP_002830380.1|1575275_1575914_+|carbonic-anhydrase-family-protein
MRKLNYNHQDQWEKEDRMTQSPILIEKAELEGKQNQVISRTKPYVATEVHNNLNNLSLTANGEIKSDRRRFQLMEVHFHHPAEHRFEGEAEPRVLEAHFVHYGSLEQPLVVSVTFKIGPKNEIFEKILDAMEDGAVTQPLILEELIPQDGNFYRYIGSLTTPPLTEGVEWLVFENALTIDLQQLNRYTSVFAAPNNRALQNLNGRSIEKYEL
>NZ_CP048019.1|WP_053906569.1|1576596_1577019_-|hypothetical-protein
MKTKTNIWSAISDIVNIHFLFISESILINTLLTKNNILGQNHGSANDFLEFVSFIFNIPSINVTKIISFCIFLLVIIGLLLNTKAMFENKESGISIVGPILGIIGNIDCFLGGTLRATSIITFIVAAVFSSLQRPIRQHN
>NZ_CP048019.1|WP_002830379.1|1577478_1577745_-|membrane-protein
MQEETKVIRIIGRMASVLSVLMYVSYIPQIISNMHGDYGNPIQPLVAGINCTVWTIYGYFKSERDWPIIVANVPGIFLGFFTFYTALH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048019_2	2.3\|281338\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281338-281367	30	NC_004305	Lactobacillus phage phig1e, complete genome	37953-37982	3	0.9
NZ_CP048019_2	2.3\|281338\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281338-281367	30	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	37953-37982	3	0.9
NZ_CP048019_2	2.6\|281536\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281536-281565	30	NC_025125	Arcobacter butzleri strain AC1163 plasmid AB-1163-LD, complete sequence	3707-3736	6	0.8
NZ_CP048019_2	2.6\|281536\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281536-281565	30	MG592562	Vibrio phage 1.193.O._10N.286.52.C6, partial genome	2060-2089	6	0.8
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	JQ340088	Halocynthia phage JM-2012, complete genome	27328-27357	6	0.8
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	MN044033	Klebsiella phage Marfa, complete genome	85138-85167	6	0.8
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	KU052488	Lactobacillus phage SA-C12, complete genome	9697-9729	6	0.818
NZ_CP048019_2	2.11\|281866\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281866-281895	30	MH809530	Lactobacillus phage Dionysus, complete genome	1653-1682	7	0.767
NZ_CP048019_2	2.11\|281866\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281866-281895	30	NC_048084	Lactobacillus phage Iacchus, complete genome	1653-1682	7	0.767
NZ_CP048019_2	2.11\|281866\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281866-281895	30	MH809531	Lactobacillus phage Bromius, complete genome	2493-2522	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MN693114	Marine virus AFVG_25M536, complete genome	14336-14365	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250021	Prevotella phage Lak-B2, complete genome	147560-147589	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250024	Prevotella phage Lak-B5, complete genome	142309-142338	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250028	Prevotella phage Lak-B9, complete genome	146443-146472	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250023	Prevotella phage Lak-B4, complete genome	147463-147492	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250025	Prevotella phage Lak-B6, complete genome	145502-145531	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250022	Prevotella phage Lak-B3, complete genome	145517-145546	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250027	Prevotella phage Lak-B8, complete genome	147674-147703	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250026	Prevotella phage Lak-B7, complete genome	147673-147702	7	0.767
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK250020	Prevotella phage Lak-B1, complete genome	146423-146452	7	0.767
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	MH319745	Marine virus AG-345-E15 Ga0172270_15 genomic sequence	12353-12382	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	KJ019094	Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome	167591-167620	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	MN694584	Marine virus AFVG_250M353, complete genome	26123-26152	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	KJ019156	Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome	167682-167711	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	96910-96939	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	KJ019054	Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome	167682-167711	7	0.767
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	MN395284	Klebsiella phage PhiKpNIH-6, complete genome	116896-116925	7	0.767
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	KU052488	Lactobacillus phage SA-C12, complete genome	9157-9189	7	0.788
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	MG557979	Lactobacillus phage Lpa804, complete genome	140174-140206	7	0.788
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	MG557979	Lactobacillus phage Lpa804, complete genome	140474-140506	7	0.788
NZ_CP048019_2	2.2\|281272\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281272-281301	30	MN694748	Marine virus AFVG_250M355, complete genome	34349-34378	8	0.733
NZ_CP048019_2	2.2\|281272\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281272-281301	30	MN694211	Marine virus AFVG_250M746, complete genome	34693-34722	8	0.733
NZ_CP048019_2	2.2\|281272\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281272-281301	30	MN694403	Marine virus AFVG_250M373, complete genome	35951-35980	8	0.733
NZ_CP048019_2	2.8\|281668\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281668-281697	30	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	67935-67964	8	0.733
NZ_CP048019_2	2.8\|281668\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281668-281697	30	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	972581-972610	8	0.733
NZ_CP048019_2	2.12\|281932\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	281932-281961	30	NZ_CP015441	Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence	80252-80281	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_017205	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence	4551-4580	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_017202	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence	32937-32966	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	99865-99894	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	142692-142721	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	CP020758	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence	35004-35033	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_020393	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence	13405-13434	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	239884-239913	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	810-839	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	228855-228884	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP010093	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence	70535-70564	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP021063	Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence	81786-81815	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NZ_CP021065	Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence	60453-60482	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_014937	Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence	60977-61006	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_018879	Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence	57296-57325	8	0.733
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	NC_020382	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence	60314-60343	8	0.733
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	224932-224961	8	0.733
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	MN855616	Bacteriophage sp. isolate 359, complete genome	6425-6454	8	0.733
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	MT006236	Bifidobacterium phage BitterVaud1, complete genome	29427-29456	8	0.733
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	9240-9269	8	0.733
NZ_CP048019_2	2.21\|282526\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282526-282555	30	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	333950-333979	8	0.733
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	NC_048694	Klebsiella phage vB_Kpn_F48, complete genome	150065-150094	8	0.733
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	MN434092	Klebsiella phage AmPh_EK29, complete genome	148944-148973	8	0.733
NZ_CP048019_2	2.22\|282592\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282592-282621	30	MN781108	Klebsiella phage vB_Kpn_P545, complete genome	148866-148895	8	0.733
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	KU052488	Lactobacillus phage SA-C12, complete genome	9997-10029	8	0.758
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	NZ_CP025589	Lactobacillus plantarum strain KC3 plasmid unnamed3, complete sequence	11905-11937	8	0.758
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	NZ_CP025589	Lactobacillus plantarum strain KC3 plasmid unnamed3, complete sequence	45912-45944	8	0.758
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	MH809531	Lactobacillus phage Bromius, complete genome	29390-29422	8	0.758
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	MH809531	Lactobacillus phage Bromius, complete genome	29990-30022	8	0.758
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	NZ_AP018826	Acinetobacter ursingii strain M3 plasmid pAURM-2, complete sequence	4447-4476	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093654	Moraxella phage Mcat30, complete genome	9938-9967	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093653	Moraxella phage Mcat29, complete genome	24583-24612	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093656	Moraxella phage Mcat32, complete genome	20992-21021	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093652	Moraxella phage Mcat28, complete genome	44880-44909	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093655	Moraxella phage Mcat31, complete genome	21008-21037	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093650	Moraxella phage Mcat26, complete genome	28000-28029	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093649	Moraxella phage Mcat25, complete genome	31302-31331	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093648	Moraxella phage Mcat24, complete genome	29383-29412	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	KR093651	Moraxella phage Mcat27, complete genome	31530-31559	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	NZ_AP018826	Acinetobacter ursingii strain M3 plasmid pAURM-2, complete sequence	4447-4476	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093654	Moraxella phage Mcat30, complete genome	9938-9967	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093653	Moraxella phage Mcat29, complete genome	24583-24612	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093656	Moraxella phage Mcat32, complete genome	20992-21021	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093652	Moraxella phage Mcat28, complete genome	44880-44909	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093655	Moraxella phage Mcat31, complete genome	21008-21037	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093650	Moraxella phage Mcat26, complete genome	28000-28029	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093649	Moraxella phage Mcat25, complete genome	31302-31331	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093648	Moraxella phage Mcat24, complete genome	29383-29412	9	0.7
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	KR093651	Moraxella phage Mcat27, complete genome	31530-31559	9	0.7
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MK017819	Clostridium phage CPD4, complete genome	52374-52403	9	0.7
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MN417334	Clostridium phage CPAS-15, complete genome	9687-9716	9	0.7
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	KY206887	Clostridium phage Clo-PEP-1, complete genome	48002-48031	9	0.7
NZ_CP048019_2	2.19\|282394\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282394-282423	30	MF001357	Clostridium phage CP3, partial genome	39099-39128	9	0.7
NZ_CP048019_2	2.14\|282064\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282064-282093	30	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	514792-514821	10	0.667
NZ_CP048019_2	2.16\|282196\|30\|NZ_CP048019\|CRISPRCasFinder,CRT,PILER-CR	282196-282225	30	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	514792-514821	10	0.667
NZ_CP048019_4	4.1\|1566719\|33\|NZ_CP048019\|CRISPRCasFinder	1566719-1566751	33	JX912252	Escherichia phage ADB-2, complete genome	31142-31174	11	0.667

1. spacer 2.3|281338|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 3, identity: 0.9

acggcactcgccattcgaacatgaaatcga	CRISPR spacer
atggcacacgccattcaaacatgaaatcga	Protospacer
*.***** ********.*************

2. spacer 2.3|281338|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 3, identity: 0.9

acggcactcgccattcgaacatgaaatcga	CRISPR spacer
atggcacacgccattcaaacatgaaatcga	Protospacer
*.***** ********.*************

3. spacer 2.6|281536|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_025125 (Arcobacter butzleri strain AC1163 plasmid AB-1163-LD, complete sequence) position: , mismatch: 6, identity: 0.8

aaaaagtcactagcttaactaaagctggta	CRISPR spacer
aattagtaactagcttatctaaagctgttt	Protospacer
**  *** ********* ********* *

4. spacer 2.6|281536|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MG592562 (Vibrio phage 1.193.O._10N.286.52.C6, partial genome) position: , mismatch: 6, identity: 0.8

aaaaagtcactagcttaactaaagctggta	CRISPR spacer
acaaagtcactagcttttctaaagccaata	Protospacer
* **************  *******...**

5. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 6, identity: 0.8

ctctccttcataaaccttaacatcataacc	CRISPR spacer
tgcacgttcatcaaccttaacaccataacc	Protospacer
. * * ***** **********.*******

6. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN044033 (Klebsiella phage Marfa, complete genome) position: , mismatch: 6, identity: 0.8

tagctaaatctccattagtaactaatccac	CRISPR spacer
tagctaaatcgccattagtaaatttttcaa	Protospacer
********** ********** *  *.**

7. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 6, identity: 0.818

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
agcgtctaaagttgataatggtgactttgaaac	Protospacer
 * *** ********************.  ***

8. spacer 2.11|281866|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MH809530 (Lactobacillus phage Dionysus, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacactccgttataacgggcataga	CRISPR spacer
attgaatcactccgttataacgggcaaggc	Protospacer
*  .** ******************* .*

9. spacer 2.11|281866|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_048084 (Lactobacillus phage Iacchus, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacactccgttataacgggcataga	CRISPR spacer
attgaatcactccgttataacgggcaaggc	Protospacer
*  .** ******************* .*

10. spacer 2.11|281866|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MH809531 (Lactobacillus phage Bromius, complete genome) position: , mismatch: 7, identity: 0.767

aggaaaacactccgttataacgggcataga	CRISPR spacer
attgaatcactccgttataacgggcaaggc	Protospacer
*  .** ******************* .*

11. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN693114 (Marine virus AFVG_25M536, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aagttatcaaatatatattcaacatatttt	Protospacer
*************.*******. *   * *

12. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

13. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

14. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

15. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

16. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

17. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

18. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

19. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

20. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 7, identity: 0.767

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
aaaagagcaaatacatattcaggaaagtta	Protospacer
**.  * ****************** **

21. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MH319745 (Marine virus AG-345-E15 Ga0172270_15 genomic sequence) position: , mismatch: 7, identity: 0.767

ctctccttcataaaccttaacatcataacc	CRISPR spacer
agttccttcataaacctcaacatcatcaaa	Protospacer
  .**************.******** *

22. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KJ019094 (Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
tactaaaatcaccattagtaactaattctg	Protospacer
** . ***** ***************.*

23. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN694584 (Marine virus AFVG_250M353, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
cagaagcatctccattagtacctgatccac	Protospacer
.**  . ************* **.******

24. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KJ019156 (Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
tactaaaatcaccattagtaactaattctg	Protospacer
** . ***** ***************.*

25. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
tactgaaatctccatcagtaacttatcctt	Protospacer
** . **********.******* **** .

26. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KJ019054 (Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
tactaaaatcaccattagtaactaattctg	Protospacer
** . ***** ***************.*

27. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN395284 (Klebsiella phage PhiKpNIH-6, complete genome) position: , mismatch: 7, identity: 0.767

tagctaaatctccattagtaactaatccac	CRISPR spacer
tagctaaatccccattagtaaatttttcga	Protospacer
**********.********** *  *.*.

28. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 7, identity: 0.788

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
tgctagcaaggttgataatggtgacttctcaac	Protospacer
.*     **.***********************

29. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to MG557979 (Lactobacillus phage Lpa804, complete genome) position: , mismatch: 7, identity: 0.788

cgggtca--aaagttgataatggtgacttctcaac	CRISPR spacer
--agctagcaaggttgataatggtgacttttcaac	Protospacer
  .*..*  **.*****************.*****

30. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to MG557979 (Lactobacillus phage Lpa804, complete genome) position: , mismatch: 7, identity: 0.788

cgggtca--aaagttgataatggtgacttctcaac	CRISPR spacer
--agctagcaaggttgataatggtgacttttcaac	Protospacer
  .*..*  **.*****************.*****

31. spacer 2.2|281272|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN694748 (Marine virus AFVG_250M355, complete genome) position: , mismatch: 8, identity: 0.733

attatagacttaattttggctcatacactt	CRISPR spacer
attatagaattacttttggctcaaaagaag	Protospacer
******** *** ********** * .

32. spacer 2.2|281272|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN694211 (Marine virus AFVG_250M746, complete genome) position: , mismatch: 8, identity: 0.733

attatagacttaattttggctcatacactt	CRISPR spacer
attatagaattacttttggctcaaaagaag	Protospacer
******** *** ********** * .

33. spacer 2.2|281272|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN694403 (Marine virus AFVG_250M373, complete genome) position: , mismatch: 8, identity: 0.733

attatagacttaattttggctcatacactt	CRISPR spacer
attatagaattacttttggctcaaaagaag	Protospacer
******** *** ********** * .

34. spacer 2.8|281668|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tgggctttggcgtattccattgccgaatcc	CRISPR spacer
ccgagtttggcgtattccattgacgaaaag	Protospacer
. *. ***************** ****

35. spacer 2.8|281668|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 8, identity: 0.733

tgggctttggcgtattccattgccgaatcc	CRISPR spacer
tgggctttggcgtattcaatggcaaaccta	Protospacer
***************** ** ** .* ..

36. spacer 2.12|281932|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015441 (Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gcatacgctcgctcaatccttccactcact	CRISPR spacer
gccggacagcgctcaatccttccactcgct	Protospacer
**  .    ******************.**

37. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_017205 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

38. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_017202 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

39. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
agtttatcaattacaaattcaggaacagaa	Protospacer
*. ******* **** **********. .

40. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

41. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to CP020758 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

42. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_020393 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-107, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

43. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

44. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

45. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

46. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010093 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

47. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021063 (Bacillus thuringiensis strain ATCC 10792 plasmid poh2, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

48. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021065 (Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

49. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_014937 (Bacillus thuringiensis CT43 plasmid pBMB0558, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

50. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_018879 (Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

51. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_020382 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence) position: , mismatch: 8, identity: 0.733

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gattagaaaaatacatattcaggatcgtgg	Protospacer
.* * .  **************** ****

52. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ctctccttcataaaccttaacatcataacc	CRISPR spacer
gtctccttcataaacctttacagaaggtct	Protospacer
 ***************** ***  * . *.

53. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN855616 (Bacteriophage sp. isolate 359, complete genome) position: , mismatch: 8, identity: 0.733

ctctccttcataaaccttaacatcataacc	CRISPR spacer
ttgatattcataaactttaacatgataact	Protospacer
.*  . *********.******* *****.

54. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MT006236 (Bifidobacterium phage BitterVaud1, complete genome) position: , mismatch: 8, identity: 0.733

ctctccttcataaaccttaacatcataacc	CRISPR spacer
ttgatattcataaactttaacatgataact	Protospacer
.*  . *********.******* *****.

55. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 8, identity: 0.733

ctctccttcataaaccttaacatcataacc	CRISPR spacer
gtctccttcataaacctttacagaaggtct	Protospacer
 ***************** ***  * . *.

56. spacer 2.21|282526|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.733

ctctccttcataaaccttaacatcataacc	CRISPR spacer
gtctccttcataaacctttacagaaggtct	Protospacer
 ***************** ***  * . *.

57. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NC_048694 (Klebsiella phage vB_Kpn_F48, complete genome) position: , mismatch: 8, identity: 0.733

tagctaaatctccattagtaactaatccac	CRISPR spacer
tagctaaatccccattagtaaatttctcga	Protospacer
**********.********** *  ..*.

58. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN434092 (Klebsiella phage AmPh_EK29, complete genome) position: , mismatch: 8, identity: 0.733

tagctaaatctccattagtaactaatccac	CRISPR spacer
tagctaaatccccattagtaaatttctcga	Protospacer
**********.********** *  ..*.

59. spacer 2.22|282592|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN781108 (Klebsiella phage vB_Kpn_P545, complete genome) position: , mismatch: 8, identity: 0.733

tagctaaatctccattagtaactaatccac	CRISPR spacer
tagctaaatccccattagtaaatttctcga	Protospacer
**********.********** *  ..*.

60. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 8, identity: 0.758

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
agcgcagaaagttgataatggtgctttctcagc	Protospacer
 * *. .**************** .******.*

61. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to NZ_CP025589 (Lactobacillus plantarum strain KC3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
tgatagtaaagttgacaatggagacttctcaac	Protospacer
.*.    ********.***** ***********

62. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to NZ_CP025589 (Lactobacillus plantarum strain KC3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
tgatagtaaagttgacaatggagacttctcaac	Protospacer
.*.    ********.***** ***********

63. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to MH809531 (Lactobacillus phage Bromius, complete genome) position: , mismatch: 8, identity: 0.758

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
tgctagcaaggttgataatggtgacttttcaac	Protospacer
.*     **.*****************.*****

64. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to MH809531 (Lactobacillus phage Bromius, complete genome) position: , mismatch: 8, identity: 0.758

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
tgctagcaaggttgataatggtgacttttcaac	Protospacer
.*     **.*****************.*****

65. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018826 (Acinetobacter ursingii strain M3 plasmid pAURM-2, complete sequence) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
gtctttgctattttaaaaaataagattgtg	Protospacer
  ******.**********.*****... .

66. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093654 (Moraxella phage Mcat30, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

67. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093653 (Moraxella phage Mcat29, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

68. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093656 (Moraxella phage Mcat32, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

69. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093652 (Moraxella phage Mcat28, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

70. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093655 (Moraxella phage Mcat31, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

71. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093650 (Moraxella phage Mcat26, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

72. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093649 (Moraxella phage Mcat25, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

73. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

74. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093651 (Moraxella phage Mcat27, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

75. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018826 (Acinetobacter ursingii strain M3 plasmid pAURM-2, complete sequence) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
gtctttgctattttaaaaaataagattgtg	Protospacer
  ******.**********.*****... .

76. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093654 (Moraxella phage Mcat30, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

77. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093653 (Moraxella phage Mcat29, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

78. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093656 (Moraxella phage Mcat32, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

79. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093652 (Moraxella phage Mcat28, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

80. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093655 (Moraxella phage Mcat31, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

81. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093650 (Moraxella phage Mcat26, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

82. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093649 (Moraxella phage Mcat25, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

83. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

84. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KR093651 (Moraxella phage Mcat27, complete genome) position: , mismatch: 9, identity: 0.7

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
aagaatgccattttaaaaattaagacagaa	Protospacer
 .   ************** ****** ..*

85. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MK017819 (Clostridium phage CPD4, complete genome) position: , mismatch: 9, identity: 0.7

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gacttatctaatacatattcaggattaaca	Protospacer
.* ***** *************** ..

86. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MN417334 (Clostridium phage CPAS-15, complete genome) position: , mismatch: 9, identity: 0.7

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gatttatctaatacatattcaggattaaca	Protospacer
.* ***** *************** ..

87. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to KY206887 (Clostridium phage Clo-PEP-1, complete genome) position: , mismatch: 9, identity: 0.7

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gacttatctaatacatattcaggattaaca	Protospacer
.* ***** *************** ..

88. spacer 2.19|282394|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to MF001357 (Clostridium phage CP3, partial genome) position: , mismatch: 9, identity: 0.7

aagttatcaaatacatattcaggaacgtgt	CRISPR spacer
gacttatctaatacatattcaggattaaca	Protospacer
.* ***** *************** ..

89. spacer 2.14|282064|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.667

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
caagcatccattttgaaaagtaagaccatt	Protospacer
..  .  *******.*************

90. spacer 2.16|282196|30|NZ_CP048019|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.667

tgctttgccattttaaaaagtaagaccaga	CRISPR spacer
caagcatccattttgaaaagtaagaccatt	Protospacer
..  .  *******.*************

91. spacer 4.1|1566719|33|NZ_CP048019|CRISPRCasFinder matches to JX912252 (Escherichia phage ADB-2, complete genome) position: , mismatch: 11, identity: 0.667

cgggtcaaaagttgataatggtgacttctcaac	CRISPR spacer
taacgacaacgttgttaatggtgacttctcata	Protospacer
...    ** **** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1507513 : 1612801

114

Lactobacillus_phage(56.0%)

integrase,terminase,head,portal,tRNA,tail,protease,capsid,holin

attL 1531682:1531702|attR 1573387:1573407

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002831947.1\|1507513_1508770_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.5e-139	58.8
WP_002830460.1\|1508864_1509452_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_002830457.1\|1509454_1509745_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A1S7FYY8	Listeria_phage	7.7e-20	47.9
WP_004165963.1\|1510105_1511593_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_004165962.1\|1511592_1512336_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-31	37.9
WP_002831942.1\|1512500_1514285_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_002831941.1\|1514324_1515620_+	GTPase ObgE	NA	NA	NA	NA
WP_063504367.1\|1515687_1515990_-	hypothetical protein	NA	NA	NA	NA
WP_002830452.1\|1516120_1517047_+	ribonuclease Z	NA	NA	NA	NA
WP_008841319.1\|1517105_1517891_+	SDR family NAD(P)-dependent oxidoreductase	W8CYX9	Bacillus_phage	7.0e-07	35.1
WP_063504366.1\|1517908_1520230_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.5e-85	33.3
WP_002830449.1\|1520230_1520749_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.0e-27	43.3
WP_002831937.1\|1521076_1521271_+	hypothetical protein	NA	NA	NA	NA
WP_119179090.1\|1521272_1522169_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-24	36.3
WP_063504365.1\|1522165_1522942_+	hypothetical protein	NA	NA	NA	NA
WP_063504364.1\|1523125_1524586_+	catalase	A0A2K9L572	Tupanvirus	1.4e-104	49.5
WP_002830444.1\|1524843_1526019_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_002831933.1\|1526424_1527750_+	sodium:proton antiporter	NA	NA	NA	NA
WP_002830442.1\|1527899_1528496_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_002830441.1\|1528719_1528968_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002831931.1\|1529163_1529547_+	YxeA family protein	NA	NA	NA	NA
WP_063504363.1\|1529779_1531228_-	hypothetical protein	NA	NA	NA	NA
1531682:1531702	attL	NA	NA	NA	NA
WP_162013312.1\|1531843_1532959_-\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	6.5e-99	51.7
WP_162013313.1\|1533096_1534098_-	Abi family protein	M1PS09	Streptococcus_phage	8.0e-48	35.6
WP_162013314.1\|1534357_1534522_-	hypothetical protein	NA	NA	NA	NA
WP_162013315.1\|1534629_1535016_-	transporter	A0A0P0I7G8	Lactobacillus_phage	3.1e-32	62.9
WP_162013316.1\|1535084_1535495_-	hypothetical protein	NA	NA	NA	NA
WP_162013317.1\|1535501_1535840_-	helix-turn-helix domain-containing protein	M1PKY8	Streptococcus_phage	1.2e-11	37.8
WP_162013318.1\|1536112_1536328_+	hypothetical protein	NA	NA	NA	NA
WP_162013319.1\|1536346_1536517_+	hypothetical protein	NA	NA	NA	NA
WP_162013320.1\|1536513_1536717_-	hypothetical protein	NA	NA	NA	NA
WP_162013321.1\|1536774_1537497_+	phage regulatory protein	D2IYT0	Enterococcus_phage	7.0e-54	50.6
WP_162013322.1\|1537510_1537840_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_162013323.1\|1537986_1538841_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	2.1e-25	32.1
WP_162013324.1\|1538845_1539586_+	AAA family ATPase	B4XYS4	Lactobacillus_phage	3.3e-67	55.5
WP_162013325.1\|1539585_1540113_+	DUF669 domain-containing protein	A0A1P8VVN0	Streptococcus_phage	8.8e-30	47.9
WP_162013326.1\|1540125_1540656_+	HNH endonuclease	NA	NA	NA	NA
WP_162013327.1\|1541492_1542725_+	DNA helicase	A8YQM1	Lactobacillus_phage	3.8e-60	36.6
WP_162013328.1\|1542724_1543141_+	hypothetical protein	NA	NA	NA	NA
WP_162013329.1\|1543137_1543608_+	hypothetical protein	A0A0A7DMU0	Lactobacillus_phage	9.3e-23	43.8
WP_162013330.1\|1543651_1543879_+	hypothetical protein	NA	NA	NA	NA
WP_162013331.1\|1543878_1544499_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_162013332.1\|1544665_1545037_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_162013333.1\|1545205_1545730_+	DUF1642 domain-containing protein	A0A1S5SB02	Streptococcus_phage	5.0e-09	38.3
WP_162013334.1\|1545890_1546307_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_159206393.1\|1546595_1546916_+	hypothetical protein	NA	NA	NA	NA
WP_162013335.1\|1547000_1547204_+	hypothetical protein	NA	NA	NA	NA
WP_162013336.1\|1547208_1547487_+	hypothetical protein	NA	NA	NA	NA
WP_162013337.1\|1547609_1548122_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	2.9e-78	88.5
WP_159209329.1\|1548127_1548397_+	hypothetical protein	NA	NA	NA	NA
WP_162013338.1\|1548468_1548801_+	hypothetical protein	NA	NA	NA	NA
WP_159209327.1\|1548964_1549423_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	8.0e-80	96.7
WP_162013339.1\|1549425_1551324_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	96.2
WP_162013340.1\|1551313_1551508_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	3.7e-26	92.2
WP_162013341.1\|1551510_1552674_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.0e-208	93.2
WP_159215944.1\|1552651_1553395_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	5.4e-126	95.5
WP_002831808.1\|1553394_1554627_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.1e-211	92.9
WP_002831807.1\|1554699_1555032_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	1.0e-44	85.2
WP_002831805.1\|1555021_1555369_+\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	1.8e-39	67.0
WP_002831803.1\|1555371_1555779_+	hypothetical protein	A0A2P0ZLE6	Lactobacillus_phage	3.9e-62	87.9
WP_162013342.1\|1555778_1556159_+	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	5.3e-61	92.9
WP_162013343.1\|1556172_1556862_+\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	4.0e-107	93.2
WP_002831799.1\|1556938_1557313_+	hypothetical protein	A0A2P0ZLH4	Lactobacillus_phage	3.2e-58	96.0
WP_159207769.1\|1557357_1557543_+	hypothetical protein	NA	NA	NA	NA
WP_162013344.1\|1557573_1562028_+	transglycosylase SLT domain-containing protein	A0A2P0ZLG0	Lactobacillus_phage	0.0e+00	66.8
WP_162013345.1\|1562104_1563874_+\|tail	phage tail protein	E9LUR2	Lactobacillus_phage	0.0e+00	90.1
WP_162013346.1\|1563937_1566322_+	hypothetical protein	E9LUR3	Lactobacillus_phage	0.0e+00	91.1
WP_162013347.1\|1566308_1568690_+\|tail	phage tail protein	A0A1I9KK49	Lactobacillus_phage	2.2e-11	80.9
WP_086131892.1\|1568682_1568922_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	5.7e-29	85.7
WP_002831790.1\|1569070_1569430_+	hypothetical protein	E9LUR7	Lactobacillus_phage	6.6e-45	79.0
WP_162013348.1\|1569441_1570626_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	2.9e-182	82.5
WP_002831786.1\|1570625_1570889_+\|holin	holin	E9LUR9	Lactobacillus_phage	3.0e-31	82.8
WP_162013377.1\|1570904_1571270_+\|holin	holin	A0A2K9VCG4	Lactobacillus_phage	1.4e-15	63.8
WP_002830702.1\|1571730_1572513_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_002830382.1\|1573762_1574872_+	L-lactate oxidase	NA	NA	NA	NA
1573387:1573407	attR	NA	NA	NA	NA
WP_002830380.1\|1575275_1575914_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_053906569.1\|1576596_1577019_-	hypothetical protein	NA	NA	NA	NA
WP_002830379.1\|1577478_1577745_-	membrane protein	NA	NA	NA	NA
WP_002830378.1\|1577867_1578377_-	membrane protein	NA	NA	NA	NA
WP_002830377.1\|1578969_1579347_+	general stress protein	NA	NA	NA	NA
WP_002830376.1\|1579558_1580296_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
WP_002830375.1\|1580523_1580973_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002830373.1\|1581074_1581533_+	flavodoxin	NA	NA	NA	NA
WP_002830371.1\|1581707_1583291_+	sodium:proton antiporter	NA	NA	NA	NA
WP_002830370.1\|1583313_1584309_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.1e-73	43.8
WP_002830368.1\|1584539_1585724_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002830367.1\|1586260_1586461_+	helix-turn-helix transcriptional regulator	A0A1V0E021	Clostridioides_phage	1.3e-10	54.8
WP_058120782.1\|1586457_1586922_+	hypothetical protein	NA	NA	NA	NA
WP_002831915.1\|1587276_1587507_+	hypothetical protein	NA	NA	NA	NA
WP_002830365.1\|1587730_1589029_+	uracil transporter	Q9KX94	Enterobacteria_phage	1.1e-62	36.9
WP_002831912.1\|1589354_1590302_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_002831910.1\|1590311_1591049_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002830362.1\|1591063_1591393_+	hypothetical protein	NA	NA	NA	NA
WP_002830361.1\|1591500_1593732_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	S4TRQ0	Salmonella_phage	7.6e-06	38.5
WP_002830354.1\|1593741_1594191_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_002830353.1\|1594281_1594905_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_002830352.1\|1594889_1595759_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	2.9e-22	38.2
WP_002830351.1\|1596172_1597447_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	7.8e-24	25.7
WP_002830349.1\|1597462_1599244_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_002830347.1\|1599525_1600404_+	YitT family protein	NA	NA	NA	NA
WP_004165945.1\|1600416_1601574_+	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA
WP_002831904.1\|1601566_1602772_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_002831903.1\|1602774_1603665_+	deoxyribonuclease IV	A0A2L2DJK8	Acanthamoeba_polyphaga_mimivirus	2.8e-28	32.3
WP_063504360.1\|1603922_1604300_-	hypothetical protein	NA	NA	NA	NA
WP_002830341.1\|1604322_1605132_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_002830340.1\|1605331_1605517_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_002830339.1\|1605575_1606019_+	GatB/YqeY domain-containing protein	A0A0K2FLI9	Brevibacillus_phage	1.5e-14	35.9
WP_063504359.1\|1606030_1606999_+	phosphate starvation-inducible protein PhoH	L7TP00	Rhizobium_phage	3.1e-49	47.6
WP_063504362.1\|1607003_1607474_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_004165942.1\|1607457_1607841_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_002830335.1\|1607865_1608780_+	GTPase Era	NA	NA	NA	NA
WP_063504358.1\|1608782_1609544_+	DNA repair protein RecO	NA	NA	NA	NA
WP_063504357.1\|1609829_1610729_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_063504356.1\|1610728_1612801_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA

DBSCAN-SWA_2

1640803 : 1648125

Staphylococcus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002830304.1\|1640803_1641274_+	nucleoside deoxyribosyltransferase	K4I206	Lactobacillus_phage	2.7e-14	34.6
WP_004165925.1\|1641337_1642207_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.5e-55	37.8
WP_063504752.1\|1642322_1643531_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	3.8e-44	35.1
WP_063504346.1\|1643533_1645429_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	8.6e-51	30.5
WP_002831862.1\|1645433_1646384_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	5.1e-113	59.9
WP_004165921.1\|1646401_1646884_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	3.6e-22	39.1
WP_002830297.1\|1647279_1648125_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.1e-17	35.6

DBSCAN-SWA_3

1673956 : 1682519

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002831743.1\|1673956_1674439_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.4e-18	39.7
WP_063504749.1\|1674422_1675583_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_063504336.1\|1675560_1676295_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	1.4e-41	42.1
WP_063504748.1\|1676281_1676542_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_004165894.1\|1676538_1677213_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_063504747.1\|1677230_1679435_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-146	41.6
WP_063504335.1\|1679419_1680889_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.7e-57	34.1
WP_063504334.1\|1680891_1681938_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	1.0e-53	37.0
WP_053906056.1\|1681937_1682519_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-22	35.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection