CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048114	Edaphobacter sp. 12200R-103 chromosome, complete genome	3 crisprs	csa3,cas3,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5,DinG	0	11	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048114_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048114_1

3118951-3119055

Orphan

Consensus_repeat	Method
TAAAGAGGTGTCATCCTGAGCAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048114_1

>merge|NZ_CP048114|1|3118951-3119055|CRISPRCasFinder
TAAAGAGGTGTCATCCTGAGCAAAGCAGCATGCTCAAGAGTAAAGAGGGTCATCCTGACCAGAGCAGCAAGCTCGGGAATAAAGAGGTGTCATCCTGAGCGAAGC

>NZ_CP048114|1|1|3118951-3119055|CRISPRCasFinder
TAAAGAGGTGTCATCCTGAGCAAAGC	AGCATGCTCAAGAGTAAAGAGGGTCATCCTGACCAGAGCAGCAAGCTCGGGAA
TAAAGAGGTGTCATCCTGAGCGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048114.1\|WP_162402641.1\|3125154_3125658_-\|DUF417-family-protein	unknown	unknown	gnl\|CDD\|282127
NZ_CP048114.1\|WP_162402642.1\|3125799_3126726_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378976
NZ_CP048114.1\|WP_162402636.1\|3114364_3114568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402635.1\|3113213_3114248_+\|LOG-family-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP048114.1\|WP_162402638.1\|3116789_3117548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402634.1\|3112847_3113183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402640.1\|3122588_3123764_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340842
NZ_CP048114.1\|WP_162402639.1\|3119737_3122464_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NZ_CP048114.1\|WP_162403969.1\|3127307_3128351_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP048114.1\|WP_162403968.1\|3123926_3125123_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223513
NZ_CP048114.1\|WP_162402631.1\|3107740_3108475_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP048114.1\|WP_162403966.1\|3117851_3118874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402632.1\|3110233_3112204_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP048114.1\|WP_162402637.1\|3114718_3116779_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370517
NZ_CP048114.1\|WP_162403967.1\|3119392_3119728_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|163261
NZ_CP048114.1\|WP_162403965.1\|3108483_3109782_-\|cardiolipin-synthase-B	unknown	unknown	gnl\|CDD\|234967
NZ_CP048114.1\|WP_162402633.1\|3112393_3112621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402644.1\|3128616_3130299_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235967
NZ_CP048114.1\|WP_162402645.1\|3130325_3131123_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402643.1\|3126738_3127257_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051

Protein	Function_ID	Function_description	E-value
NZ_CP048114.1\|WP_162402641.1\|3125154_3125658_-\|DUF417-family-protein	gnl\|CDD\|282127	pfam04224, DUF417, Protein of unknown function, DUF417. This family of uncharacterized proteins appears to be restricted to proteobacteria.	9.96123e-25
NZ_CP048114.1\|WP_162402642.1\|3125799_3126726_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	1.35413e-28
NZ_CP048114.1\|WP_162402635.1\|3113213_3114248_+\|LOG-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	7.06713e-41
NZ_CP048114.1\|WP_162403969.1\|3127307_3128351_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	3.09521e-54
NZ_CP048114.1\|WP_162402640.1\|3122588_3123764_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	2.50824e-72
NZ_CP048114.1\|WP_162402639.1\|3119737_3122464_+\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	0
NZ_CP048114.1\|WP_162402644.1\|3128616_3130299_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|235967	PRK07208, PRK07208, hypothetical protein; Provisional.	0
NZ_CP048114.1\|WP_162403968.1\|3123926_3125123_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223513	COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism].	8.39788e-107
NZ_CP048114.1\|WP_162402631.1\|3107740_3108475_-\|hypothetical-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	7.10365e-36
NZ_CP048114.1\|WP_162402632.1\|3110233_3112204_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP048114.1\|WP_162402637.1\|3114718_3116779_+\|hypothetical-protein	gnl\|CDD\|370517	pfam09471, Peptidase_M64, IgA Peptidase M64. This is a family of highly selective metallo-endopeptidases. The primary structure of the Clostridium ramosum IgA proteinase shows no significant overall similarity to any other known metallo-endopeptidase.	1.57011e-38
NZ_CP048114.1\|WP_162403967.1\|3119392_3119728_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|163261	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein [Regulatory functions, DNA interactions].	1.86894e-50
NZ_CP048114.1\|WP_162403965.1\|3108483_3109782_-\|cardiolipin-synthase-B	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	1.83837e-91
NZ_CP048114.1\|WP_162402643.1\|3126738_3127257_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	7.64416e-74

>NZ_CP048114.1|WP_162403966.1|3117851_3118874_+|hypothetical-protein
MRWAEQRSQRLSGIRPDYAHSYWTPPLTPRLAFDLESSQIENKLQLPALVSLTDHDDIQAPLLLRSVPSARHIPISLEWTVPFYESAFHIGVHNLPSATGQQWMDRLRAFTALSVAGRNPHLLREIMAELDEIPNTLIVFNHPMWDLYRVGKERHEVLVNEFLAVYGQYIHALELNGLRDWKENREAAELAGRWNQLTISGGDRHGVEPNANVNLTRATCFTGFVHEVRRERQSHVLYMPQYAEPWKHRILQSTLDAIRDYPHFPEGARRWDQRVYHPDSKGEMRPLVELWTSERRVAPAWIRTILACVRMMGQAPLSGTLRYAWDDSAKMRAALAKQEG
>NZ_CP048114.1|WP_162402638.1|3116789_3117548_+|hypothetical-protein
MALQIDQKKPETMQEGADLKTIRNPGLPMMAAKPETPAKIKGEHMPKEPAVKVPSGEQVMSPFDPKAPAKPGKPKEGFQEMKGHPGITETQTSGQSYLRLRMRVTGDRLSVIDVQQVPGPLVLSGSVAGEYAYEVQLDAKPLAAEGILDVGVSRSFPRPGTNEHFITQRSTFEFNVRLPRAEVPDASIPRLSIVVYRFADTSPKMIQGRISAQPGLQAHPVAQLQGIQIEALEPALREKFQKVFPRLTPSRQ
>NZ_CP048114.1|WP_162402637.1|3114718_3116779_+|hypothetical-protein
MPDSVTQVLSSGPVGAKVNIAVMGDGFAAGDQTLYNNKVQEFLLDGVFGHDYFYEDKQAFNIFRVNLISVDSGVSTRQYDEHGTPDDPSDDTITSTTLRNTALGYIFSGSWAHCWLEGGANTSTLVNNALNKWVPDYNLVVIFLNNPNYGGCGGGGFQVVPLGIDWHVLAHEFGHGLGALADEYCTSKVYSGGEPGNVDVTINTNRNTLKWKNFVAPTTPIPTGIGNCAGYTQGTRPADWDDTQSVGLFEGGGTNGTGMYRPVINCRMRSNTPEYCPVCYTQMKRINDAKTEHTFLDCHTGDFNGDGKDDLLIHTNNSIQIFRSNGSQMDIVFSAVAIVPGSWQFTAGDQFYIGDFNGDGKKEVVVYNSTNWIMPYLGLLADDGANGLRLIARYDGSMPGWQFSKDDRFFVGDFDGDHKQDLFVFNGTNWAIPYLGMLHSTGTGFQVIHRYDANMPGWQMTKGDQFYTGDFNGDGKCDLFVFNGSNWVYPYLGMLSSNGSSLSMAHRYDNVLPSWQMTKGDRFYPADSNGDGKVDLYVFNGDNWSIAYLGMLQSTGSGLNMAHRYDGSVPGWQMRKHDQFWVGDVTGDRKQDLFVYNCNDWATQYLGSMISSGSALSATWSADWVGEWNLGTVDRFEPCNYEGGKAHRDLVVHNHDWLGLIRSTPTMQLQKIYYRFIHNYRYGRNW
>NZ_CP048114.1|WP_162402636.1|3114364_3114568_-|hypothetical-protein
MKEREWVALSEVEWNLSSTFKEVPFAEHHTARPSKRGVISTGDAQREVENPPHSGMLVGMIALLETP
>NZ_CP048114.1|WP_162402635.1|3113213_3114248_+|LOG-family-protein
MALDEKNSQTATPATPEAPEPLEIAPLAYENPDFINSPDARILRIMSEYQEPLSRFRRERIQDTIVFFGSARFRALDVAAANFELLANTGSREAAAEQPARLEEIEHGKATGARLRLAGAAIEMAAYYEDARILANMLATWAKSLPGPRHRFVITSGGGPGIMEAANRGAYEAGAKTIGLNIKLPFEQQPNPYITPSLNFDFHYFFMRKYWLVYLAKALVIFPGGFGTLDEMFEILTLAQTHKLAKKIPVVIYGTPYWKSVMNLDVLAEKGAIAHADLSLFRFADTPEDAFEILKEELTKNHLDSDYEKALQERARRAAGAQEVPHDPAPTAQDILGPDIASTR
>NZ_CP048114.1|WP_162402634.1|3112847_3113183_+|hypothetical-protein
MPGQSQLFPDHEPTVLPPPPGDPVEPRHAAAPVWLQRLSLFVLVLFCVYLGILVMLLPWWTRVWDQNLYIQSHPALAAVLHNGAVRGIISGLGLLDIWIGISEAVHYRDYR
>NZ_CP048114.1|WP_162402633.1|3112393_3112621_+|hypothetical-protein
MNRILNQITTGILQQAASRRSETTAPVKLYLPMEYGSWIANTSVGNSDGPAAEYPASELYFSPGLTRGRVDSSGI
>NZ_CP048114.1|WP_162402632.1|3110233_3112204_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLQLIGAGKRFGQKLLYEDINWLITPNERTALVGGNGTGKSTLLKVIAGVESLDYGQITRVKGTTIGYLPQDGLAMRGKTVFEECLSVFEHLHALEAESLELMTVMSEKDPKSKEYATAADRYSEIADQLHVHDIYTLDAQVGAVLGGLGFTREDWQRKTEEFSGGWQMRIALAKLLLQKPSLLLLDEPTNHLDLESRNWLENYLHDYPNAFILISHDRYFLDVTVNKIVELWNKRMHVYHGNYEKYVTQKEERRATLMAAYKNQRDRIEALEAFINRFRYQATKAKQVQSRIKELEKIERIEVPEEEATIHFTIPQPPASGRTVIEVENLTKVYPTPDGGQKTILDNVNFTIERGDRIALVGANGAGKSTLIRMLSEQEAPTGGTIRYGHNAIVDFFAQDQYKVLNPNNEMLDDIAAASPKVPVVELRSLLGCFMFSGDDVFKKLGVLSGGERNRYAMAKMLVSPSNMLLLDEPTNHLDLRAKDVLLDAIRNFTGTVLFVSHDRYFIDGLATRVFEVEDRRVHIYPGNYEDYLWRKQGGPEKVSESLSSGLSVAVPAPPPVAVEPVPTVAAAPAAPVKRVNPIKLKQMEDRLKFAEEEIPRLEQAIATAEERLGNFVSAEQSQKDASDLDRLRHDKAVLTAEWEELAMALEEQQA
>NZ_CP048114.1|WP_162403965.1|3108483_3109782_-|cardiolipin-synthase-B
MLLATVTLPTHLVVLGGVALLLLLLFLLSGLFGPMPRYKITGSEELPSNESEEFLGLLEALGDASVKRTGRFEVLTNGENFYPAELAAIREAEQSVNLEAYIFQKSQIGQLYLDALAERARAGVQVNVLLDAFGSAGITRAFFRPLLDAGGKICWYNTPAWHRLTQMDHRTHRELLIVDGLVGFIGGAGIGDHWYTGVRGHAPWRDDMVRVEGEPVANLQATFAENWLEAIGELLIGSAYFPELSSLEPTSALVINSTPSGGGATRARVLFQLLLASARHSISITTPYFLPDKGLMRELCLAVERGVQVRILVPGERSDHFLTRSTSRGGYGPLLKAGADIYEYEPAMMHAKILRVDHVWSIVGSTNFDNRSFGINDEVNLAVRDRELAARLKIDFEADLAQSTKVTLAAWKSRPIHERITEVLGWIFERQQ
>NZ_CP048114.1|WP_162402631.1|3107740_3108475_-|hypothetical-protein
MSQLKVATYNVHKCRGLDQKISPERVAEVIHQLDADVVCLQEVVHAPEGLAQFNQAERIASELPGYTWAFGGNRSLHGGAYGNMTLTRLSLTDWRNHDLTHQRREERGVLQTDVALAGSRLLRIFNVHLGTSFLERRHQGKRLFDAEILSQEQSSYPRLVLGDLNEWTRGLTTRLLRREFETFRPRHIWKFPRTYPGIFPLMTLDHLYFESPLSLVSTGLWRSRLAMVASDHLPLAATFEVVER
>NZ_CP048114.1|WP_162403967.1|3119392_3119728_+|PadR-family-transcriptional-regulator
MHVKRDEIPPGTLYLLILKALSLHGPLHGYEMANFIQQRSEDVLQVEEGSLYPALQRMLLKGWVEAEWGVTAGNRRARYYRLTQAGRKQLALELSQFERVFGAIQRITQIA
>NZ_CP048114.1|WP_162402639.1|3119737_3122464_+|ABC-transporter-permease
MFLDESLRRIKMLFRGSRFRKELQEEMRTHRELREQEYLDRGRNPVAAHREANRRFGNPATLQEKSYQSWGWSWLTSLVQDVRYGVRSMFRSPALTIVALLSLALGIGANTAIFSFIDTLMLRSLPVKDPAQLMFFGREGESGITDDIASTTLYSYPFFREMQKRNSVFSDVAALLSMLDTIHGTIEGQDAMQPMRVQLVSGSYFPTLGVQAIQGRALTEADDTTEGDHPVVVVSYAWWKRALASDPAVLSRKLILGTTKFDIVGVAPPEFFGTSVGEEPDMWAPLSMMHSVPPMWDGYKKNFWDGMYVIGRLKPGVSPEQATSNVNLLYQQIIRSFPDADLSERNLGYLQRAHVELTPMSKGLSSLRRRFSDPLRVLMGITALVLLIACANIANLLLARSTARARELAVRQALGAGRLRIVRQLLTESLVLALTGGLLGVGLARIADRLLLRMISGGPDLVPLDVSLNTHLLVFTFVVAVSTAILFGIIPAFRSTRLELTEALKDGRSSSSRGSSKSRVGKVLIVSQIALSLVLMVGAVLFIRTLMNLNNIDTGFNREGVLRLDIDSNVTGLKSDDPRMIAMFQQIEQRVSALPGVKAASFASFLFSQGSWSTSIRVVGQNLNDQVNIKHNVVGNGYLATMQIPLLAGRNFGPQDTATSHKVAIISEHMVKDLFPAGVNPIGHHYYDGLDALPDTEVEVIGIAKDVKFGSLQERPQYIDYMPNPQHPWGYGTLAVRYTGNFETVSRAVQQAIHSVNPRLPISNIGTLDEQVSRTLTYHRIVAQLSAFFGLLAVFLSCIGIYGLMSYMVGKRTSEIGIRIAIGASRASVRWLVLREIAVLTAIGIAIGIPVTLGASRVVGAMLYGLHGADASSVLASVVALLAVALLAAYLPARRAASVDPVIALRYE
>NZ_CP048114.1|WP_162402640.1|3122588_3123764_+|glycosyltransferase-family-1-protein
MRAPRVAYLPDSYHEVNGVAHTSRNFVAYAERHALPFLCIRAGQRQPQFEHLTEIRTLELARSRAAIRIEKDLQFDPLFFRHAPAIRRELLRFRPDLIHITGPSELGIFGAYFAWKQGIPLAASWHTNVHEYAARRMNWLTRRLSARFAAQIEQGVEHGSLWATTRFYALARVLFAPNDELCTMLAKATGKPCHLMQRGVDTEQFSPAHRTRPLDDPTLVLGYVGRLSIEKNVALLARIEHELLQMGITSFRFLIVGHGSEESNLRTTLRQADFAGVLRGAELAAAYANMDLFVFPSYTDTFGNVVLEALSSGVPAIVTTGGGPKYIVRDQATGFVTTEEGFAPAIAALARDRARLTQMRTAAREYALTCSWDAVFSRVYDGYREMLSPAL
>NZ_CP048114.1|WP_162403968.1|3123926_3125123_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAQVVVAKGRGLVLSELAPRMVQSEIRAMSVESDRVGGVNLAQGVCDTEVPQVVAEAANAAIRDGHNIYTRLDGIARLRRAIAEKTERMQGMVVDPEREVLVASGATGAFHAVAMALFDPGDEVLLFEPFYGYHVGALRSMRVVPVAVELTAPEWSLDLDRVRAAITAKTRAILVNTPSNPAGKVFTRQELEGLAEIAREFDLFVLTDEIYEHFIYGDAKHLSPATLDGMRERTIVMSGFSKTFSVTGWRIGYVIANAKWMGAISYFHDLLYVCAPAPFQYGVAAGVEQLGRTFYAGLALEHEGKREMLVCALRDAGMAPHVPDGAYYILASTAGLQGVLSGDTAAQKARSLLAKTGVAAVAGSAFFRPGKGEDLLRFCFAKKDEDLEEACRRLRGLQ
>NZ_CP048114.1|WP_162402641.1|3125154_3125658_-|DUF417-family-protein
MNLLIGILEKSGLLKKDLDYKLVRWSMVMIFLFFGYQKWFSYEAHTLIPFIGNGPLISWMYPAFGIQGASWFLGVAEWLFGGLLFAGFWNKKLGVFGALGSAASFVATLTIIPFMPDGWNASAGGFPAMQGNVAFLAKDLVLFAASIYLLKQDAERVISGMRDADVR
>NZ_CP048114.1|WP_162402642.1|3125799_3126726_+|AraC-family-transcriptional-regulator
MDWLSSLLDLVAVSGRLDIRCLYATPWRLALGSFQPGEIPYHIVVKGAAVLQNPSGGPPQKIHSGDILILPHGRSHVLEDGSGLQPVKAYPEKSLNLVVDRNAGTGDPLDMLCGRFLVAQPYDRLLLDYLPDDLIIRAGDQSTPAGSQLAALIELMRTEANTGTLGGYAMLNALSAAVFALALRVASESNIVPTGLLAAAAEPRLGPALTAMFQEPGCSWTLPELARLSHMSRATFVRHFRRKMGRSASDLLTDIRMTLAARRLRNSSASTAEVAESAGYLSDAAFQRAFKQRMGMTPAQWRRAKRTV
>NZ_CP048114.1|WP_162402643.1|3126738_3127257_-|gamma-carbonic-anhydrase-family-protein
MIRSYQGRTPVIPQSCYVDPSAQVIGDVELGEQASIWMNAVVRGDVNSIRIGAKSNVQDCAVLHGMRNLYAVTVGEMVTIGHNATVHGCTLEDYVLVGIGAVILNDARIGEGSIIAAGAVIPEHTVIPPRSLVVGVPGKVKKALGEEDRKMIARYAQNYLDYTAIYLAERAE
>NZ_CP048114.1|WP_162403969.1|3127307_3128351_-|NAD(P)-dependent-oxidoreductase
MAHYLVTGASGFFGGVLKRRLLREGHTVVNIDLEQDEDTLPGLTSIQGDLRDAALVKRTFAEHRFDAVFHVAAQLAHGMKMDEHLLWTSNVDATRLLAETARDAGVRPFVFVSTNCLWASNLGHPVHEERDTPAPVELYGRSKLAAEKLLEEFTSDLDVVSIRCPTIMDAGRLGLLAILYEFIDDHKTVWVVGDGSNRYQFIYAEDLATACIQAASYGKSDLFHIGSDDVKTMREVYESVIRASSSRSKVRSLPKAPTIAAMMAAHKLRVSPLGPYHYKMIAESFVFDTDRIKQRLGWRPTLTNEEMLLKAYEYYAKNRDEISSRTNVSTHRKPASMGVIRLLKWIS
>NZ_CP048114.1|WP_162402644.1|3128616_3130299_+|NAD(P)/FAD-dependent-oxidoreductase
MPQQAVIIGAGPAGLTAALELLRRTGIRPILLEGSHEIGGISRTIRYKGNRMDIGGHRFFSKSDRVMQWWIDLMPPDDPSGVISYQGSQRVVEVPAAPPQHPPLRGMGPLEVDTETEETDALGEEHREAHGHTETVVTHEPDDKDLVMLIRPRRSRIYYLRKFFDYPITLTATTLSNLGVVRTVRVGMSYLKSRVTQIAPEKSLEDFLINRFGRELYLTFFKSYTEKVWGTPCNEISAEWGAQRIKGLSLTTAVKHFVKKTFSGASKGGDISQKETDTSLIERFMYPKFGPGQLWEHVADLVTQGGGEIHMGWKVDRIHCQGDKVISVEAVSDAGERRTFAGDYFFSTMPMRDLVRAVDAPVPANVREVSEGLQYRDFITVGLLVDRLKVREPDGGLLKDTWIYVQEPDVLLGRLQIFNNWSPYLVADPSRVWIGLEYFCYDTDPLWKMEDEELKRFAIAEVAKIGILRAEDVSDGHVVRVPKTYPAYFGTYNRFEELRAFTDSFENLFLVGRNGMHKYNNQDHSMLTAMAVVDGLAAGKVDKAALWNINTEQEYHEEKK
>NZ_CP048114.1|WP_162402645.1|3130325_3131123_+|hypothetical-protein
MRVRSLVLISASLLCTPLLSSQPAKPAAAQVNAIQDARLAGIRDLKGTMFHVQGMDLDSTHVWVTSVDIEHKRGFLHQFNRETGQFERQVELTDGVRFHPGGISVDGDFIWVPVAEYRPHSSAEILELDKKTLATKRKIVVEDHIGCVAVVPEGLVAGNWGSKQLYLLDHQGKQLRVIDSPSETQYQDMKFVRGELVASGNLDRTSGTIDWYSWPAMKLVRSLRAGQTDRGRPLTIEAMALKGSDLFLVPEDGPSRLFHFVLDKP

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Crispr_ID: NZ_CP048114_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048114_2

3344670-3344790

Orphan

Consensus_repeat	Method
CCCACCTTAGCGGCTTCGCCGCGAAGATGGGGCACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048114_2

>merge|NZ_CP048114|2|3344670-3344790|CRISPRCasFinder
CCCACCTTAGCGGCTTCGCCGCGAAGATGGGGCACCCGTTTTTGGCTGTGCTGTTGGTAGGGGTAGGGAGAGATCCTGCGAAGCCCACCTTAGCGGCTTCGCCGCGAAGATCGGGGCACCC

>NZ_CP048114|2|2|3344670-3344790|CRISPRCasFinder
CCCACCTTAGCGGCTTCGCCGCGAAGATGGGGCACCCG	TTTTTGGCTGTGCTGTTGGTAGGGGTAGGGAGAGATCCTGCGAAG
CCCACCTTAGCGGCTTCGCCGCGAAGATCGGGGCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048114.1\|WP_162402797.1\|3350311_3351475_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP048114.1\|WP_162402785.1\|3332765_3332999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402792.1\|3342323_3343322_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP048114.1\|WP_162402801.1\|3353352_3354528_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP048114.1\|WP_162402796.1\|3347576_3349397_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP048114.1\|WP_162403997.1\|3337575_3338832_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP048114.1\|WP_162402798.1\|3351545_3352007_+\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214874
NZ_CP048114.1\|WP_162402795.1\|3346508_3347060_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP048114.1\|WP_162400420.1\|3345743_3346466_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NZ_CP048114.1\|WP_162402802.1\|3354549_3355536_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_CP048114.1\|WP_162402794.1\|3345025_3345556_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176862
NZ_CP048114.1\|WP_162402799.1\|3352211_3352775_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NZ_CP048114.1\|WP_162402790.1\|3339919_3340723_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|153216
NZ_CP048114.1\|WP_162402793.1\|3343560_3344520_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP048114.1\|WP_162402789.1\|3339082_3339883_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP048114.1\|WP_162402788.1\|3336730_3336973_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP048114.1\|WP_162402800.1\|3352771_3353299_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|226604
NZ_CP048114.1\|WP_162402791.1\|3340875_3341505_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP048114.1\|WP_162402787.1\|3334172_3336365_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP048114.1\|WP_162402786.1\|3333166_3334033_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102

Protein	Function_ID	Function_description	E-value
NZ_CP048114.1\|WP_162402802.1\|3354549_3355536_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.47464e-63
NZ_CP048114.1\|WP_162402792.1\|3342323_3343322_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.09757e-76
NZ_CP048114.1\|WP_162402801.1\|3353352_3354528_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.11819e-26
NZ_CP048114.1\|WP_162402796.1\|3347576_3349397_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	6.38963e-101
NZ_CP048114.1\|WP_162403997.1\|3337575_3338832_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.1791e-72
NZ_CP048114.1\|WP_162402798.1\|3351545_3352007_+\|GyrI-like-domain-containing-protein	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	6.426e-15
NZ_CP048114.1\|WP_162402795.1\|3346508_3347060_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	2.20694e-18
NZ_CP048114.1\|WP_162402797.1\|3350311_3351475_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	4.30312e-136
NZ_CP048114.1\|WP_162402794.1\|3345025_3345556_+\|hypothetical-protein	gnl\|CDD\|176862	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.34717e-16
NZ_CP048114.1\|WP_162402799.1\|3352211_3352775_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	2.1931e-40
NZ_CP048114.1\|WP_162402790.1\|3339919_3340723_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|153216	cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	1.30282e-48
NZ_CP048114.1\|WP_162402793.1\|3343560_3344520_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	6.31374e-69
NZ_CP048114.1\|WP_162402789.1\|3339082_3339883_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.53127e-58
NZ_CP048114.1\|WP_162402788.1\|3336730_3336973_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	4.2904e-29
NZ_CP048114.1\|WP_162402800.1\|3352771_3353299_-\|NUDIX-domain-containing-protein	gnl\|CDD\|226604	COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only].	3.55781e-64
NZ_CP048114.1\|WP_162402791.1\|3340875_3341505_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.71016e-48
NZ_CP048114.1\|WP_162402787.1\|3334172_3336365_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP048114.1\|WP_162402786.1\|3333166_3334033_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.63302e-57

>NZ_CP048114.1|WP_162402793.1|3343560_3344520_+|ParB/RepB/Spo0J-family-partition-protein
MATATPDSKRRALGKGLESLLPQRPAAPAAQPVSSIAAAAAPAEPLGKPLEVSLDHIERNPWQTRKHFDEAQLNELAQSIAASGVVQPIVVRPLPASTTQGPGQNPTRYQLIMGERRWLASRKAGKATIPAIVRQVSDEQVLEMTIVENLQRTDLNPMEQARAFQRLSQEFKLTQEQMATRTGKDRASVANFLRLLRLPESVQAKVETAELSFGHARTLLALESQEAIAAAAQKVLALSLSVRQTENYVQGLIHPESKEKKQKPEEPPQDPNVREAEDRLRRTLGLKVKIEDKRGKGRVIIEYSRLEDFDTLLEMLGDR
>NZ_CP048114.1|WP_162402792.1|3342323_3343322_+|ParA-family-protein
MTTLPSSPKTTTVEPLVGSGASSSATSTTVDPKTEAAAKACRVIAIVNQKGGVGKTTTAINLAASFALEGIPTLLIDCDPQANSSGGLGVARQTDEDEHRNSTYDLLLGDATVAESVLPTEIENLKLVPSSKNLVGATIELISADRREYRLREALAPVRAQFPFILLDCPPALDLLTLNALVAADGLLVPMQAEYFALEGISELMSTMDRVSASFNPNLSLEGVLLTMYDDRTNLAMQVTENLKAYFNDKLLKTTIPRNVRLAEAPSHGKPVALYDAKSRGAETYRELALELLARNNMESPEVKRRKAAAAAAASALKSFQKPEKKSRFWKK
>NZ_CP048114.1|WP_162402791.1|3340875_3341505_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MSLLSEAQIEKVLQPYLSPISPELTLQLSAYLGLLTKWNARTNLTAVRDPEEMVRRHFGESLFTGRHLGDPLPDTLLDLGSGAGFPGIPIALLHPSIAVTLAESQNKKATFLREVVRTLGLKNIEVWGGRAEDLPADRTFHTVTLRAVDHMAAALDAAVSRAAQQILLLATGASEILGGLSLQEKIPLPESHGSFLLRFGVASVPRGTL
>NZ_CP048114.1|WP_162402790.1|3339919_3340723_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MRPRIAIPVPTSQNPEYNSRSWPAYAEAVRKAGGDPIEIPLNASPRETADLINTCHGVLLPGSPADVNPHKFGQEPIPECNPADPARENVDELLIQDAHNLYKPLFTICFGTQSLNVWRGGTLIQDLSPVPVNHSAGRTVAVAHTAAVLQDSIVGRLLSDDEAPRHDDFARLPINSSHHQAIGIPGDGLRVVARSTEDGVVEAVEGGQDQQNPDAHFVLGVQWHPERSYEISAASRALFERFVAEAAAWKPRAIHASVVPDSAVRNS
>NZ_CP048114.1|WP_162402789.1|3339082_3339883_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPEPSTSLEQPPQRPPVAKPPAPAFFRWLTYLLLIPLIAASTTFFGCISLICGLWDKSGRQQHFIAHLWARTLLLLSLSPVTLIGAEKLRLHQTAVYAANHLSYYDTPVLFARLPFQFRIMAKQALWKIPFIGWYLNRSGQVPVDQSSSRNAVASLNRCVQTLKGGMPMVIFPEGGRTKDGHPQAFVSGAAYMAIKAQVPLVPITLVGTYELLPMHTYHLHPRPLCVVVGDPIPTTGLTTRDADALTEQLLDTITRTYISYHPELD
>NZ_CP048114.1|WP_162403997.1|3337575_3338832_+|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MPHLRGEAAKVGSQDASQEKRTSGQKETVILSEGEAAVEGSAVRPPSPNTALATNNSATPAPKAPPAVRVAPVDIAILEVGLGGRLDATNIVEPILSILTDISLDHQDYLGNTIAEITREKAGILRHHGTLITLPQHPEANQAIGEAAATLDLHAVNAAQYIPTADKLLHDTDSLVKGTASAVPHAARLREGASAPEVPLPRNRYTVTLAGQPLHVDSPLAGQHQQRNIALAIAAAEELRNPTGYKSKESNHISYKITNAQIEQGIRNTQWPGRLELISLPDSAPVLLDVAHNPAGAWTLRAALAQLPDEMPRTLLFSCLRDKDLREMSQILLPLFDASSPDRSHDHVVLAPIDSPRAATLEDLAAQARDLEVPAEITTSLKEALVQARKLTPTNGLIVATGSVYLIGELRTLILGRS
>NZ_CP048114.1|WP_162402788.1|3336730_3336973_+|membrane-protein-insertion-efficiency-factor-YidD
MPEPEPSPLARILFRIYKSVLSPALHALSPSQCLYLPTCSEYAYVALARFGPFKGSWLTLRRIARCHPFAKGGFDPVPDR
>NZ_CP048114.1|WP_162402787.1|3334172_3336365_+|catalase/peroxidase-HPI
MSTEAKCPFPHGGAAVRTNRDWWPNQLNLNLLHAHSSLSDPMGEEFDYAKEFQSLDYEALKKDLTALMTDSQDWWPADFGHYGPLFVRMAWHSAGTYRTFDGRGGGGRGQQRFAPINSWPDNVNLDRARRLLWPIKQKYGKKISWADLLILAGNVALESMGFKTFGFAGGRADVWEPDLDVNWGHETTWLGTDKRYSGERDLANPFGATTMGLIYVNPEGPEGVPDPLKAAIDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPGTHLGREPEGTTIEEQGLGWSNAYASGVAGDAIGSGLEVTWTTQPTKWTNEFFDHLFKYEWELTKSPGGAHQWKPKGDEGANTVPDAHDPNKRKQPNMLTTDLSLRFDPIYGPISRRFLEHPEEFADAFARAWFKLTHRDMGPRSRYLGPEAPKEELIWQDPVPAVDHVLVNDQDIAALKQKVLASGLTVSELVSTAWASAATFRGSDKRGGANGARIRLAPQKDWKVNEPERLAKVLKKLEGIQNEFNGAQSGGKKISLADLIVLAGCAGVEQAAKNAGIHVTVPFTPGRTDASQEQTDVESFALLEPKADGFRSYWTGETDGTAEVELLDKAQLLRLTAPELTVLLGGLRVLNINYGQARYGVFTDRPEALTNDFFVNLLDMKTVWKAVSSDENTFEGRNRKTGEVRWTATRADLIFGSNSQLRALSEVYGSADSHEKFVKDFAAVWNKVMNLDRFDLAACN
>NZ_CP048114.1|WP_162402786.1|3333166_3334033_-|LysR-family-transcriptional-regulator
MEFHQLRYVCAVAETGSFSRAAERCQIAQPSLSQQVLKLEENLGAKLFDRLGRSVRLTEAGRAFIPHARSILEQMETARSSVAQKNADVRGSVSLGVIPTISPYLVPRYTTSFAKRFPDAKLRIVEDVTPVLIESLRELSIDIAILALPLRHKDLELFPLRTEPLFAVLPKEHRLAGAASLSLRDLRGEPFVMLRDGHCFRDLSLATCARARITPNIAFESGQFSSLFGMVAAGVGISLAPEMAVDRNAGCRYIRLSDVRATRTVVAAVLRGRSFNRVQRAFLSGMQK
>NZ_CP048114.1|WP_162402785.1|3332765_3332999_+|hypothetical-protein
MQRMTWGVSAHREMFSVGVILSGARQRGVEEPALSEVERDLRFGMVTEPTNRRSFDSASGDKTARGNGFRTQRMGIA
>NZ_CP048114.1|WP_162402794.1|3345025_3345556_+|hypothetical-protein
MITLRLTTWVNAPVERCFLLATSRGFSPVVKNGVAVPDTTKGMLQCGDELGWKMSGTDHISRVDTVRPYCHFREVMTAGIFRHYEHDHHFAPMDDGTRVRDEIRFSLRMGPLGKMYGAMVVRSLLMRMLVDKNIELKRLAESAEWQRFVSVEVPLPSQVVVPPAVPGRMSNMQRFA
>NZ_CP048114.1|WP_162400420.1|3345743_3346466_+|PEP-CTERM-sorting-domain-containing-protein
MARIVCALVLLLVVASAVTGVPVHASTECERWVAEYRDQLAHSDLMKRAAAARHRVHRYVHRKVAALHPERPHPRTRVLPARLQRPKMTREEMLRQLEFACGDLPVDPVELSRTVSYEPAPAFLPGGLEGDDVMGPTMNPTGPQSLLASNDGPPTGWMPGLGGGIGGVGGGGTPPWVRNPDNPGNPDGPGTPGNPGNPGNPGNPGGPPTAVTPEPESLLLVATGVLGAVGAVRRRLQRPA
>NZ_CP048114.1|WP_162402795.1|3346508_3347060_-|single-stranded-DNA-binding-protein
MEDLQAKKKRVADFLQTLTAPGRLSLKYTIRETPIPRADGSTPEIEVEFSGPDVPLLLSRNGELLLSLEHVAAKILRYEHEEHDRISFDADSFKVLRQRELQVAAEVAVERVRRTGQPYSFSPMSSRERRLLHLALASSGLSTASSGEGSRRFVILYPEGEKPPAEPSREDRAAVIRQRFRRR
>NZ_CP048114.1|WP_162402796.1|3347576_3349397_-|membrane-protein-insertase-YidC
MAEFKNPNQQGGGGQENRSLFAIMFFMIAVFFGLSYYRQKTNPKTVSPNAPAATQSARPAAPAAPSAPAATPTSAPAPGNSAAAATPAVQATAESTTVIENELYRIEFTNRGAQVKSWLLKQYKDSEGHPLNLVHTQAADKFGYPLSLHTYDSGVNATLSQSLYVPSATGNLTAPAKLTFHYSAGGLDVTKTFSFDETYVLHADVQVLRNGTPLRALISWPGGFGDQDTALGYSGAQIDYSRDAKDEHIAAKKVSGGATLNGPFDWAGVSDTYFGAIFLPDSPATSTMVTLHNELDVAKTIHRSGFGSTSSSAKAINVSILGAAFGDTSGHTQTRIFVGPKAINVIRNVYATSSNGNKISLSPLLEFGFWGSIGKYLFLALQFIHLHVIANWGWAIILLTLIINIVQLPLRIKTMRSSIKMMRIQPQMDAIKERYKKYKINDPKRNEMNAEIMKLQKDNGVNMFGGCIPTLITLPLLYAFYAMLPRVIELRHAHWLWLPDLTSPDPYYILPVVMVISQFLMQYYTPSPGVDPQQQKMMAYFMPLITGYFVLTYASGLGLYWAVGNFFGIAQQWIMMKYTSMGREMKEIAAKRARRKAGAPVIQGKR
>NZ_CP048114.1|WP_162402797.1|3350311_3351475_+|DNA-polymerase-III-subunit-beta
MTTNAAPTGNLEITVSRAELLRELTAAQSVVERKTTIPILSNFLFEATQDEGGDRLTITATDLDQSMKTSCSARVKKPGACTIPARKLYDYIKLLPEGDISIKLMDNHWVQIRAGRSNTKMVGMARVNFPQVPEFPAAGAVKLPVAGLKNLISKTIFAISNEESRYTLNGALLVLKAESMAMVATDGHRLAHIEKVNEQLEGVQGEKKTLIPRKALGELSGLLSNTDAESIEFADDEQTLFFRVGGRVLTSRKLTGQFPNYEAVLPRDNTKFVIVRSEDLMGSIQRVAQFADERSGAIKLRLEQNELKLSSSSTDAGESEDSIETPYNYEPLVVGFNSQYLLDFLKAIGNTGEVRLEFKDAQSAGQMRPEDGNDEVRYRYILMPMRI
>NZ_CP048114.1|WP_162402798.1|3351545_3352007_+|GyrI-like-domain-containing-protein
MISVPHIVESPQQRIAFIRVKTPRGEIVHAMRVGLEELGRVLKRQNVAPSGPWFTHHFRRPDESFDFRICFPVESDVKPEGHVEAGELEAARVVQAVYSGGYEGLGGGWGELHEWIAAHNLKTRDDLWERYLMGPDMSSDTTEWRTELNRPLE
>NZ_CP048114.1|WP_162402799.1|3352211_3352775_-|RNA-2',3'-cyclic-phosphodiesterase
MKMRLFVGIALDPALTDALKRLTASLRRAGDGLRWSSPESWHITLQFLGATDPQCYESLLARLSEIHRPPLAIHLGVPDVFERAGVFHIGVLPSQHLTALERHVVAATALCGIRPEDHPYHPHITLVRSKGHEGRRGLHALLEHLHSPHTLPSFTAHEFLLYQSLPTPTGSRYEIRARFPLSSPPAQ
>NZ_CP048114.1|WP_162402800.1|3352771_3353299_-|NUDIX-domain-containing-protein
MPKRSAGLLMYRYREDVSGTAPDATLEVFLVHPGGPFWAKKDLGAWTIPKGEYSDDEDPLAAAIREFREETGFTAEGNFLPLGEIRQTGGKLVTLWAIEGDCDPDALVSMTFEMEWPPRSGRRAGFPEVDRGAWFPLTEARTRILASQQPALERLVERIPGPRSASTRIPSESTP
>NZ_CP048114.1|WP_162402801.1|3353352_3354528_+|acyltransferase
MSFQQSAVSGRSWRRVDGIDLLRGLSIFLVLMNHVNMRLLSAHVPYTKGMPPQMAATLVWSGQYGVQIFFAVSGFLITSTSMRRWRFPGGVSLKEFYTLRVARIAPLMLLLLAVLSVLHLSGVHGYVVSEKVGGLKAALAAALTFRINVLEATRGYLPAGWDILWSLSVEEVFYLFFPVVALLSRRTRMLVPLLLVFAMAGPFARAAALRHNPVWYEYSYLGGMDAIAMGCLTAILTSGRELTKRVVWWCTAFGMALLILILGFSIRVNTAGLGRNGLSMTILALGACLVIAAAASSGWRAPRLLEPVLALGRLSYEIYLTHIFVVMGLFSVFLSAGKPMRGVAVLFAGVIVCAGLLGLLVSKLYTEPMNLWIRARAGKASQEAGMAVAGR
>NZ_CP048114.1|WP_162402802.1|3354549_3355536_-|alpha/beta-hydrolase
MSDTEMLHPQVADLLSGILRPNPAAGPATIEATRAASHRLGDLLGGPAEPVHRVWESTAESSQGPVRLRWYQAEDAEPDSLLVYVHGGGWVAGDLDTHDMICRGLALRSRYIILSVDYSLAPEDIHPRPVLEVASILEQARALAGGFGLDIRTLAVAGDSAGAHLLASAMHHLASFGRALPDAAALIYPVTDASLAYPSYERFGEGFALTAVGMRWYWEQYLGSDLASLDDDHLRDPYLSPLYSPHLDRFPPSLVITAACDVLHDEGVAFTSRLRQRSVPVEHIDVPGYIHGFLRYRKVLTDPEHGPDAILTRIGEFLARQTTAKASV

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Crispr_ID: NZ_CP048114_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048114_3

4066429-4070365

TypeI

Consensus_repeat	Method
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CRISPRCasFinder
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CRT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	PILER-CR

58 spacers

cas2,cas1,cas4,cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP048114_3

>merge|NZ_CP048114|3|4066429-4070365|CRISPRCasFinder,CRT,PILER-CR
GTCTAAATCCACGCTGCCCGCGTGGGCAGCGACTCTTGCTGTAGTCGTTGCCAATATAAAGGTTCCATCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCAACAGCGCGATGCGATTCAGTCGGCGCATAAGCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAGTGCCGAGATCAACGCGTCGGCATCGCCTTCATAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTCAACGATGCGATCGCCGCCTGGACCAAAGCCAAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCCGACGCTGTCGCATGAGACCGGTATCCCCTTCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGCAGGAAGCGGGTAGCTCGGCAGTCAGCAACCTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCTCAGTCTTCAATTCGTTCATCGTGCGCCTCCAAGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCAACTCTCCTCTTCTGGCCATGGTATCGGGCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAATTAGTACAAGGTGACGCTTATAACCAGCGCCGGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCGGTGAGCAATATCGAGTGGACGCAGGAGACGTGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCTGAAACAGCCCCGTGACGATCACGGGCGCTTCGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACACTCGCATTGCGCGATGATTTTGACTTGGACCTTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCTTCTGGAGCATGCACAATCCTCCGCTCGAGAGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCTCTTAATCCGGCCTATCCCAGCTTCGATTCAGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACATGGAAAGCAGAATGCACCCCTCGCTCTCACTGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCAGAGGAGCACGTCGAACTTCAGCTTGCGCACATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTGCCGGTGAGCGGAATCTGCGGCGGCGACTGGCATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTCGCCGCCCTCGGCGCAATCGCTGGATCCACCGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCAAAACCGCCGACCCGATATCATCGTGTGCTGATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGTGTCTGCGGGTCGCTCAAAACGATAGTTACCGGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGTCCAGCAACCAGCACGCTTCAAAATATGCTTCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCGTCGCTCCGACATCAGACAAACCCCTTTTCGGGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTGAGAGGAGGAGCGGTGACGGAAGAGACGACGGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCCGCCTTCAATTCGTTCATCGTGCGCCTCCAAAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCGCGTCTTCCCTGTAACGGTCACAAAAGCTAAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTCTGTTCAACACGCCAACGGTTCACTAGACAAAAGTTTCAATCCACGCTGCCCATGTGGGCAGCGACAGGATCGTGACGGTTCGCAGAAAGATTGCGAAAAATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCAGGAGCGGGATCGGAAAAGACCTTGGGCAACGATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCTGCTCTTGCGTTGGATGTGAGGTCTATCCCATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGTGGTCATTACCTCTAGCCGGTGCGCCAGCATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGCGACCACGCTGGATGGAGGTAATTGAGTTTGCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAGTCGGCCTACTGGTGGTCTGCGATGTATCAGCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGGAAACGCAGATGCGTAAGCCGCTCATCACCTTTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCGGACGCTTCTGCACCCCCTGCTGCTCCCAAGCTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGATTCTTGCCGTGGATGCGTTTATGGACTACGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGGTGACCTAACATCATCGCCGCCGGCAAAGCTAAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACACTTGCCGAAAATGCGGTCATAGAGAGATATGGCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGAGGCTTGTACGCAGGCAGCAAAGTCTTGCGCAGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGATTGGTCGATGACCGCCTTGGAGCTGGAGAGCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACACTGATCGCCCTCGTCGATAGACCACACCTGAGGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAAGCGCGAAGCTTGGCATGGGAGTAGGAGCTGGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCAGCCTCAAGGTCATCCTTCCCAACGTCACCATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAGTGAATCTTCTTGTTTCCGCGCCGGGCGATGATGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCAGTCGATCACTCGCTCTATGAGGTCTATAGGAAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCTGCACCGCGTCGATCATGCCCTGTCGTACCAGCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCCGGGCACGGAATCTTTCCCTTCGCCGGAATCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCTGCATATCCGTCTTTAGTGCCATTCTGGGTCAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCCTTCAATCCGCGCTGTGCTGATTGAGGACAAGGCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACCGCTACACGGCGCACGGGACCAGCGTCATGCTGGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTACATGGCACGATCAGCGTACTCGACGATGGTCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAGGTCTGCGGCTGAATCCGTGGCGGTAGTGCCTGTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGTGGAGGCCGCAGGGTCGCGTGAAGTTGCATCCGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGCTGTATGGACACTCCGCTCCGAATCGCTCGTGAGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACAAGAGCATGACCGCACCGCAGGCTACACTCTTTTGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACGACCTCGTGCGTCATGTACTTCCACAGTTTGCGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGACTCGGTAAGGTTCTGCATGGGCTGGCTACGGCTGGGTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC

>NZ_CP048114|3|3|4066429-4070365|CRISPRCasFinder
GTCTAAATCCACGCTGCCCGCGTGGGCAGCGAC	TCTTGCTGTAGTCGTTGCCAATATAAAGGTTCCATC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAACAGCGCGATGCGATTCAGTCGGCGCATAAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGCCGAGATCAACGCGTCGGCATCGCCTTCATA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCAACGATGCGATCGCCGCCTGGACCAAAGCCAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGACGCTGTCGCATGAGACCGGTATCCCCTTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCAGGAAGCGGGTAGCTCGGCAGTCAGCAACCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTCAGTCTTCAATTCGTTCATCGTGCGCCTCCAAG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAACTCTCCTCTTCTGGCCATGGTATCGGGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AATTAGTACAAGGTGACGCTTATAACCAGCGCCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGGTGAGCAATATCGAGTGGACGCAGGAGACGTG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTGAAACAGCCCCGTGACGATCACGGGCGCTTCGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTCGCATTGCGCGATGATTTTGACTTGGACCTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTTCTGGAGCATGCACAATCCTCCGCTCGAGAGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTCTTAATCCGGCCTATCCCAGCTTCGATTCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ATGGAAAGCAGAATGCACCCCTCGCTCTCACTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGAGGAGCACGTCGAACTTCAGCTTGCGCACAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGCCGGTGAGCGGAATCTGCGGCGGCGACTGGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGCCGCCCTCGGCGCAATCGCTGGATCCACCGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAAAACCGCCGACCCGATATCATCGTGTGCTGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGTCTGCGGGTCGCTCAAAACGATAGTTACCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTCCAGCAACCAGCACGCTTCAAAATATGCTTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGTCGCTCCGACATCAGACAAACCCCTTTTCGGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGAGAGGAGGAGCGGTGACGGAAGAGACGACGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCCGCCTTCAATTCGTTCATCGTGCGCCTCCAAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGCGTCTTCCCTGTAACGGTCACAAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCTGTTCAACACGCCAACGGTTCACTAGACAAAA
GTTTCAATCCACGCTGCCCATGTGGGCAGCGAC	AGGATCGTGACGGTTCGCAGAAAGATTGCGAAAAAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGGAGCGGGATCGGAAAAGACCTTGGGCAACGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCTCTTGCGTTGGATGTGAGGTCTATCCCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGGTCATTACCTCTAGCCGGTGCGCCAGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCGACCACGCTGGATGGAGGTAATTGAGTTTGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTCGGCCTACTGGTGGTCTGCGATGTATCAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGAAACGCAGATGCGTAAGCCGCTCATCACCTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCGGACGCTTCTGCACCCCCTGCTGCTCCCAAGCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTCTTGCCGTGGATGCGTTTATGGACTACGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGTGACCTAACATCATCGCCGCCGGCAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTTGCCGAAAATGCGGTCATAGAGAGATATGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGAGGCTTGTACGCAGGCAGCAAAGTCTTGCGCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTGGTCGATGACCGCCTTGGAGCTGGAGAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTGATCGCCCTCGTCGATAGACCACACCTGAGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGCGCGAAGCTTGGCATGGGAGTAGGAGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAGCCTCAAGGTCATCCTTCCCAACGTCACCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGAATCTTCTTGTTTCCGCGCCGGGCGATGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAGTCGATCACTCGCTCTATGAGGTCTATAGGAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCACCGCGTCGATCATGCCCTGTCGTACCAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGGGCACGGAATCTTTCCCTTCGCCGGAATCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGCATATCCGTCTTTAGTGCCATTCTGGGTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTTCAATCCGCGCTGTGCTGATTGAGGACAAGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCTACACGGCGCACGGGACCAGCGTCATGCTGGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TACATGGCACGATCAGCGTACTCGACGATGGTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGGTCTGCGGCTGAATCCGTGGCGGTAGTGCCTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTGGAGGCCGCAGGGTCGCGTGAAGTTGCATCC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGTATGGACACTCCGCTCCGAATCGCTCGTGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGAGCATGACCGCACCGCAGGCTACACTCTTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GACCTCGTGCGTCATGTACTTCCACAGTTTGCG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGGTAAGGTTCTGCATGGGCTGGCTACGGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC

>NZ_CP048114|3|1|4066429-4070365|CRT
GTCTAAATCCACGCTGCCCGCGTGGGCAGCGAC	TCTTGCTGTAGTCGTTGCCAATATAAAGGTTCCATC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAACAGCGCGATGCGATTCAGTCGGCGCATAAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGCCGAGATCAACGCGTCGGCATCGCCTTCATA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCAACGATGCGATCGCCGCCTGGACCAAAGCCAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGACGCTGTCGCATGAGACCGGTATCCCCTTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCAGGAAGCGGGTAGCTCGGCAGTCAGCAACCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTCAGTCTTCAATTCGTTCATCGTGCGCCTCCAAG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAACTCTCCTCTTCTGGCCATGGTATCGGGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AATTAGTACAAGGTGACGCTTATAACCAGCGCCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGGTGAGCAATATCGAGTGGACGCAGGAGACGTG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTGAAACAGCCCCGTGACGATCACGGGCGCTTCGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTCGCATTGCGCGATGATTTTGACTTGGACCTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTTCTGGAGCATGCACAATCCTCCGCTCGAGAGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTCTTAATCCGGCCTATCCCAGCTTCGATTCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ATGGAAAGCAGAATGCACCCCTCGCTCTCACTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGAGGAGCACGTCGAACTTCAGCTTGCGCACAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGCCGGTGAGCGGAATCTGCGGCGGCGACTGGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGCCGCCCTCGGCGCAATCGCTGGATCCACCGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAAAACCGCCGACCCGATATCATCGTGTGCTGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGTCTGCGGGTCGCTCAAAACGATAGTTACCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTCCAGCAACCAGCACGCTTCAAAATATGCTTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGTCGCTCCGACATCAGACAAACCCCTTTTCGGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGAGAGGAGGAGCGGTGACGGAAGAGACGACGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCCGCCTTCAATTCGTTCATCGTGCGCCTCCAAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGCGTCTTCCCTGTAACGGTCACAAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCTGTTCAACACGCCAACGGTTCACTAGACAAAA
GTTTCAATCCACGCTGCCCATGTGGGCAGCGAC	AGGATCGTGACGGTTCGCAGAAAGATTGCGAAAAAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGGAGCGGGATCGGAAAAGACCTTGGGCAACGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCTCTTGCGTTGGATGTGAGGTCTATCCCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGGTCATTACCTCTAGCCGGTGCGCCAGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCGACCACGCTGGATGGAGGTAATTGAGTTTGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTCGGCCTACTGGTGGTCTGCGATGTATCAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGAAACGCAGATGCGTAAGCCGCTCATCACCTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCGGACGCTTCTGCACCCCCTGCTGCTCCCAAGCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTCTTGCCGTGGATGCGTTTATGGACTACGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGTGACCTAACATCATCGCCGCCGGCAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTTGCCGAAAATGCGGTCATAGAGAGATATGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGAGGCTTGTACGCAGGCAGCAAAGTCTTGCGCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTGGTCGATGACCGCCTTGGAGCTGGAGAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTGATCGCCCTCGTCGATAGACCACACCTGAGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGCGCGAAGCTTGGCATGGGAGTAGGAGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAGCCTCAAGGTCATCCTTCCCAACGTCACCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGAATCTTCTTGTTTCCGCGCCGGGCGATGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAGTCGATCACTCGCTCTATGAGGTCTATAGGAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCACCGCGTCGATCATGCCCTGTCGTACCAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGGGCACGGAATCTTTCCCTTCGCCGGAATCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGCATATCCGTCTTTAGTGCCATTCTGGGTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTTCAATCCGCGCTGTGCTGATTGAGGACAAGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCTACACGGCGCACGGGACCAGCGTCATGCTGGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TACATGGCACGATCAGCGTACTCGACGATGGTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGGTCTGCGGCTGAATCCGTGGCGGTAGTGCCTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTGGAGGCCGCAGGGTCGCGTGAAGTTGCATCC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGTATGGACACTCCGCTCCGAATCGCTCGTGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGAGCATGACCGCACCGCAGGCTACACTCTTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GACCTCGTGCGTCATGTACTTCCACAGTTTGCG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGGTAAGGTTCTGCATGGGCTGGCTACGGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC

>NZ_CP048114|3|1|4066498-4070365|PILER-CR
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAACAGCGCGATGCGATTCAGTCGGCGCATAAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGCCGAGATCAACGCGTCGGCATCGCCTTCATA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCAACGATGCGATCGCCGCCTGGACCAAAGCCAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGACGCTGTCGCATGAGACCGGTATCCCCTTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCAGGAAGCGGGTAGCTCGGCAGTCAGCAACCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTCAGTCTTCAATTCGTTCATCGTGCGCCTCCAAG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAACTCTCCTCTTCTGGCCATGGTATCGGGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AATTAGTACAAGGTGACGCTTATAACCAGCGCCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGGTGAGCAATATCGAGTGGACGCAGGAGACGTG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTGAAACAGCCCCGTGACGATCACGGGCGCTTCGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTCGCATTGCGCGATGATTTTGACTTGGACCTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTTCTGGAGCATGCACAATCCTCCGCTCGAGAGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTCTTAATCCGGCCTATCCCAGCTTCGATTCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ATGGAAAGCAGAATGCACCCCTCGCTCTCACTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGAGGAGCACGTCGAACTTCAGCTTGCGCACAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGCCGGTGAGCGGAATCTGCGGCGGCGACTGGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGCCGCCCTCGGCGCAATCGCTGGATCCACCGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAAAACCGCCGACCCGATATCATCGTGTGCTGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGTCTGCGGGTCGCTCAAAACGATAGTTACCGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTCCAGCAACCAGCACGCTTCAAAATATGCTTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGTCGCTCCGACATCAGACAAACCCCTTTTCGGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TGAGAGGAGGAGCGGTGACGGAAGAGACGACGGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCCGCCTTCAATTCGTTCATCGTGCGCCTCCAAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCGCGTCTTCCCTGTAACGGTCACAAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCTGTTCAACACGCCAACGGTTCACTAGACAAAA
GTTTCAATCCACGCTGCCCATGTGGGCAGCGAC	AGGATCGTGACGGTTCGCAGAAAGATTGCGAAAAAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCAGGAGCGGGATCGGAAAAGACCTTGGGCAACGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCTCTTGCGTTGGATGTGAGGTCTATCCCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGTGGTCATTACCTCTAGCCGGTGCGCCAGCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCGACCACGCTGGATGGAGGTAATTGAGTTTGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTCGGCCTACTGGTGGTCTGCGATGTATCAGCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGAAACGCAGATGCGTAAGCCGCTCATCACCTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCGGACGCTTCTGCACCCCCTGCTGCTCCCAAGCT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTCTTGCCGTGGATGCGTTTATGGACTACGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGTGACCTAACATCATCGCCGCCGGCAAAGCTAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTTGCCGAAAATGCGGTCATAGAGAGATATGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGAGGCTTGTACGCAGGCAGCAAAGTCTTGCGCAGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GATTGGTCGATGACCGCCTTGGAGCTGGAGAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	ACTGATCGCCCTCGTCGATAGACCACACCTGAGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGCGCGAAGCTTGGCATGGGAGTAGGAGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCAGCCTCAAGGTCATCCTTCCCAACGTCACCAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGTGAATCTTCTTGTTTCCGCGCCGGGCGATGAT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CAGTCGATCACTCGCTCTATGAGGTCTATAGGAA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CTGCACCGCGTCGATCATGCCCTGTCGTACCAGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCCGGGCACGGAATCTTTCCCTTCGCCGGAATCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GGCCGTCGCGTTCCTGGTCTGGTCGCCGTCCAACA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGCATATCCGTCTTTAGTGCCATTCTGGGTCA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CCTTCAATCCGCGCTGTGCTGATTGAGGACAAGGC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	CGCTACACGGCGCACGGGACCAGCGTCATGCTGGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TACATGGCACGATCAGCGTACTCGACGATGGTC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AGGTCTGCGGCTGAATCCGTGGCGGTAGTGCCTGT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GTGGAGGCCGCAGGGTCGCGTGAAGTTGCATCC
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GCTGTATGGACACTCCGCTCCGAATCGCTCGTGA
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	AAGAGCATGACCGCACCGCAGGCTACACTCTTTT
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	GACCTCGTGCGTCATGTACTTCCACAGTTTGCG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC	TCGGTAAGGTTCTGCATGGGCTGGCTACGGCTGG
GTTTCAATCCACGCTGCCCGTGTGGGCAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048114.1\|WP_162403298.1\|4062423_4064760_+\|DUF1800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378055
NZ_CP048114.1\|WP_162403305.1\|4075389_4076082_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP048114.1\|WP_162404058.1\|4056390_4057587_-\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NZ_CP048114.1\|WP_162403295.1\|4054311_4055193_+\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|377446
NZ_CP048114.1\|WP_162404061.1\|4080487_4081822_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|227333
NZ_CP048114.1\|WP_162403307.1\|4081919_4083323_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP048114.1\|WP_162403300.1\|4070573_4070864_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP048114.1\|WP_162403301.1\|4070868_4071900_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP048114.1\|WP_162403306.1\|4076472_4078713_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP048114.1\|WP_162404057.1\|4055189_4055828_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP048114.1\|WP_162403297.1\|4059913_4060693_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|340391
NZ_CP048114.1\|WP_162403303.1\|4072547_4073528_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP048114.1\|WP_162403294.1\|4052812_4054051_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP048114.1\|WP_162404060.1\|4079630_4080491_+\|RraA-family-protein	unknown	unknown	gnl\|CDD\|236200
NZ_CP048114.1\|WP_162403293.1\|4051451_4052774_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP048114.1\|WP_162404059.1\|4060763_4062281_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP048114.1\|WP_162403299.1\|4064770_4066111_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP048114.1\|WP_162403302.1\|4071904_4072540_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP048114.1\|WP_162403304.1\|4073524_4075393_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP048114.1\|WP_162403296.1\|4057770_4059120_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745

Protein	Function_ID	Function_description	E-value
NZ_CP048114.1\|WP_162403298.1\|4062423_4064760_+\|DUF1800-domain-containing-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	4.44805e-62
NZ_CP048114.1\|WP_162403305.1\|4075389_4076082_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.22013e-78
NZ_CP048114.1\|WP_162404058.1\|4056390_4057587_-\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	1.15437e-24
NZ_CP048114.1\|WP_162403295.1\|4054311_4055193_+\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|377446	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase. 2-keto-3-deoxy-galactonokinase EC:2.7.1.58 catalyzes the second step in D-galactonate degradation.	8.95933e-114
NZ_CP048114.1\|WP_162404061.1\|4080487_4081822_-\|PAS-domain-containing-protein	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	9.4412e-39
NZ_CP048114.1\|WP_162403307.1\|4081919_4083323_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	5.1996e-159
NZ_CP048114.1\|WP_162403300.1\|4070573_4070864_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.36887e-30
NZ_CP048114.1\|WP_162403301.1\|4070868_4071900_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP048114.1\|WP_162403306.1\|4076472_4078713_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.67909e-47
NZ_CP048114.1\|WP_162404057.1\|4055189_4055828_+\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	4.70205e-87
NZ_CP048114.1\|WP_162403297.1\|4059913_4060693_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	2.34393e-22
NZ_CP048114.1\|WP_162403303.1\|4072547_4073528_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.38659e-119
NZ_CP048114.1\|WP_162403294.1\|4052812_4054051_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	4.2277e-105
NZ_CP048114.1\|WP_162404060.1\|4079630_4080491_+\|RraA-family-protein	gnl\|CDD\|236200	PRK08245, PRK08245, hypothetical protein; Validated.	1.65698e-17
NZ_CP048114.1\|WP_162403293.1\|4051451_4052774_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.6079e-70
NZ_CP048114.1\|WP_162404059.1\|4060763_4062281_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	4.53956e-149
NZ_CP048114.1\|WP_162403299.1\|4064770_4066111_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	5.23808e-39
NZ_CP048114.1\|WP_162403302.1\|4071904_4072540_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	2.33223e-38
NZ_CP048114.1\|WP_162403304.1\|4073524_4075393_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	3.32189e-108
NZ_CP048114.1\|WP_162403296.1\|4057770_4059120_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.67289e-20

>NZ_CP048114.1|WP_162403299.1|4064770_4066111_+|DUF1501-domain-containing-protein
MMTRRDLIKLGTRAGITAATLPLWSNEICARAFAQLSSSQYKAVVVIHLNGGNDGNNTVVPLATATYNQYSLLRGRVALPQSALIPLNGTDNSGFSTVGMHPALINIAKRFNQNQALVVANVGPIVKKLTKDELVNSDSLQPQGLFSHPVGLAQWQGSTTVALPDTGWGGRIADIYSGRSGGLPPAFTASGSCLFTVGRTVQGVAIQAQAESGGAIAIPAALQAAVRTLAQADVNSDNLIVAQVARLRESSMAEQSILSQASQYGSQLAAKFSTTALGASMKMIAQIINGRSIIGASRQLFYCVQEGYDQHGQLLNNQAKTLADLDMNVGAFMNALDEMGLTNQVMICTHSDFNRTMQSNINLGTDHGWGNHQILLGGGINGGRILGDFPDLELGGNSDFGTQGLWIPTTSVTQMTAGIGSWMGLNDDQLDSVFPDLKNFSDYLRY
>NZ_CP048114.1|WP_162403298.1|4062423_4064760_+|DUF1800-domain-containing-protein
MWTGIGKTAESFREAKRPFWPTSLVIVAYVAVLMGLNGCGSHNAGQSTSLAISSTSNAVRAGDTISFSVQESDGSSGQWKVLGPAANGRIDQSGLFHAPDAVPQPSTVTVSYTLNDKTVTHAVQILNPVPVINSVSPNSVRTAFSNISITGQKFVVGAQVLVNGLAVPTTFVNSGNLQATIAVGDSQSPLNLTVSNPEPGRSTSSPITLPVALQPIAISPAVVTSGAVSVNISGISFSNDIAATLDDRPLLLKAASDSAISAMGFIPPWHSGATTARVYSKSTGVEVATIPLSITPAAVPFDTAARFLTQAGFGPRPDLIQHVQTIGLDAYITEQQSMPVQPYTSADSGIISIIKRSVMGPNPLRMRVAWALQSFLVRSGISQQGTNFPFEQKMEADSTGNFRDVLTDVASDTSIAMMLTLAGNAVPKDPAQHPNQNFARELLQLFSIGSYLLNDDGTIQTSPDGSPVPAYDQTTILELSRVFTGWNYGPPVNSDYTFYGIDWSAPLVANEAQHDKGQKVLFGNVLIPAGQSAEQDRKMALDAVFAHPNLPPFISRILIQRLVKSDPTPQYVKRVADVFRDNGRGIRGDLAAVVRAILLDPEARAGDDDNGVSPSDGFLQEPYLFQLFVMNITGWTDSDAQPAYLPCKLQECVFSPTTVFGFYNPSHRIPGTTINSPEFQLLNDVSLVNRSQALWGILTGQQRGFRQISNAAWLLQNFPDIPDLVDALNHIAYHGRMSTEEQQLIVSYCNQLQTTDPLLPAESAIFLALNADNFTVTH
>NZ_CP048114.1|WP_162404059.1|4060763_4062281_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MGGLSKVFFDIDAENIAGLEYIKKPFAKSEVLRILIVDDDTQIRRACCQILKAKGAQIIGAGTLSEAEAMMRKQDIDLVLLDLKLPDGGGLTLLEKIKVLYPDTAVVVMTAFATVSSAVEAMRIGARDYLTKPFSLQELTAVLERAGQRAIFDQQSRLLRKKLNSHEETNILMGNAPEMGKLHRLISRVTFSTHPVLILGESGTGKDAVARAIHFNGPNAAKPFVALDCCTASQSSIETDLFGGNVNMHAARNQSKTGMLANPEGGTLFLDEIGELSLEIQAKLVRVLQEKEIRLGGSRAISLSVRVLAATNRNLASMVEQGKFRKDLFFRLNVVSMRIPPLRERREDILLLATHFLAKNEHPSDLSRSLSDHALNAMLEYDWPGNIRELVSSIEHACAVSREAVIDLGDMPTNLQQVGLARLGEEQVCSELKNAEGHTNNGDATTLGDEIITISEMEKRAILETIQRLNGDKLLAAKLLGIGKTTLYRKLREYGIGELIPNILA
>NZ_CP048114.1|WP_162403297.1|4059913_4060693_+|HAMP-domain-containing-histidine-kinase
MQPSQSFTAIQGLGVSGFNEPLLQSDQQQSLFSLGPSSLEGARLAHDAGNLLGALSLYAELLASPGVLSKRYRSYANEIKILADRSNALIERLAGYRRDSARMPEKVVLPNLIENYSGLLTAIIGRPIEIVIGPLSDQILAVSNEVVERVLLNLAKNAASATPPSGNITIAVEGGRTCHSSGQGHVLMTVTDEGSGMSREKLRTLFESAPSKDGTGRGLGLQIVRELVEGSGGYLEIQSHPGRGTKASVKWFTRRIDAA
>NZ_CP048114.1|WP_162403296.1|4057770_4059120_+|Gfo/Idh/MocA-family-oxidoreductase
MKKNDTGLLSRRGFLQLGATTAIATHALAMAPAAPASQKTMAEVPFRKREPRLGLIGTGGRGTSLLKNLLGADAQIVGLCDVVAEKAKAAQVLVTKAGQKSPALYTEGPHDYQKMLQHEDIDFVVVATPWIWHAEMAVYAMEHGKDVAVEVPAVRTIADCWRIVDTSERTRRHCMMLENCCYGYNETLVLRMIHAGLFGDLLYGEGAYLHDLREELFSNAGEGLWRRTEHTLRNGNLYPTHGLGPVANYMGIQRGDMFAYMVSMSSPQRGLDVFRAKHVKAGDPRLSEKYVTGDMNTSLIKTAKGLTITVKHNVSSPRPYDRVNQIAGTEGMFEDYPPRLYLDGQNTDESWGTLDKWKQYEHPLWKKEGEVARKMGGHGGMDYIMLYRLLQCVRQGMAPDMDVYDAAAWSSVAELSVKSVSQGSAPMEFPDFTRGLWRSRPFSAICTMA
>NZ_CP048114.1|WP_162404058.1|4056390_4057587_-|DUF5009-domain-containing-protein
MDSPVPDQVKPKRNVAVDAYRGLVMLLMMAEVLHFSQVARAYPNSTFWHILAFNQTHVEWTWFGLHDLIQPSFTFLVGVALPYSIRSRQKKGETFAHSLAHTIVRSIVLIALGIFLRSIHRPITYFTFEDTLTQIGMGYTFAFLLAFCRPRWQWVAFGAILFAYWLAWAIYPLPLANFDYATVGVPSEWHTHLLHGFAAHWNKNVNLGQAFDVWFLNLFPRTSPFLYNPGGYLTLSFIPTLGTMLLGLAAGRWLIESPSQIPFRRFLIAGTSLVGAGILLHVLGINPIVKRIWTPAWTLFSGGLCFYLLAAFSWLIDVQGHGRLAFPLVVIGMNSIAAYLIAHLWEDFVESSLHTHLGDRVLYLLGAGLEPLVLGGLTLLIYWSALYWMYRQKILLRI
>NZ_CP048114.1|WP_162404057.1|4055189_4055828_+|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MANLDLRSWLQQCPVIAILRGIRPDEAESIVYALEEAGIRIVEVPLNSPDPLQSIATLARVFGDRMLVGAGTLTDGVQVTDVARAGGRLIVTPHADLSIVHAAKESGLIAVPGFFNPTEAFALLKAGADAIKLFPAEVVGPPMLKALRAVLPNDAIVIPVGGIDAGSIPGWKAAGADGFGAGASLYRPGDDAETVRRKAMALLHSARNAPST
>NZ_CP048114.1|WP_162403295.1|4054311_4055193_+|2-dehydro-3-deoxygalactonokinase
MIGVDWGTTNFRAFRFDVAGQVMERRTYPVGILNVKAGEFAETLQEKVGDWIADGERRVLLSGMVGSRQGWVEAGYLPCPATLHDLARAVISVPFSDAHVLLIPGVRSKDSTGVPEVMRGEETEVMGIAEWHGGSKLVCMPGTHTKWIELEAQSIVRFQTCMTGDLFAALRKETILSKLMRGEGMPDEEGFFRGVERSADAGGLLHHLFGARALTLTGGLKEEAAASYLSGLLIGHEVRSMMPLNASVHLVGAAQLCDLYRRAIGACGGAATMEDEEAAARGLAAIGGRVDWR
>NZ_CP048114.1|WP_162403294.1|4052812_4054051_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MNRRSFLQSLSATALTAATGSLPAFASLPKMKITRVRAYLPPNPNPLFNQSDVVVTIETDAGITGIGEGGSKDTLSQSAGRLIGRDPQYIEQLWQDMNRAFFYPAGREKTDAIGALDLALWDIKGKVLKLPVHEILGGMVRKHVECYNTAGIIPGITSSTPIKERARLTVDAGYRAFRFGAADAPANTTFNTRERINKVREECEQVREGVGPNGDWCIDFHQRFDLADAIRGCNLIEEYNPLFVEDPVRAEAFLQDLPILRGKVNVPLAAGEEWGNRWDFNSLVENHSIDYVRATLPNVGGITEMMKIAALCETHFIGIVPHFTGPIATAALVNCLGTYPGPVLMEYNYQGRTLPHLPVCLDFKDGKLYANERPGLGVELDYKQLTKIAEITEPVTARAQTYFRPDGSITNW
>NZ_CP048114.1|WP_162403293.1|4051451_4052774_-|MFS-transporter
MTQPHKTGTALPVRYLLVFWLFVLSSVAYLDRTNISIAGIQIGHEYGISNTHLGWIFSAFLIGYAIFQVPAGLLAHRYGSRRLLTFAVVWWGIFTVLTTLVPPSLTHAVAILIFVRFALGAGEATMYPAASQFVERWFPIPERGKANGIIFGGVGAGSGFTPPIVTAIILHFGWRASFWFSALCGILAGIIWYFAARDTPEEHQQVSEHELAIIQAGRGPKHASTATKHSIPWRNIFSSKEILALTFSYFAFGYVAWVFFGWFYIYLAQARGFNLKTSAVYSILPFVGMTIGAIGGGIASDWLVQRFSLRIGRCILPFFAMALTSALLIIGSRAEQASTAGIVLALGAGVLYISQSCFWAITADFAGEYAGLVSGIMNMGAQIGGAIATSLTPFLAARMGWQAAFFTAAGLALFGALSWLLVDPGQSLAPAEDDAIPVLP
>NZ_CP048114.1|WP_162403300.1|4070573_4070864_-|CRISPR-associated-endonuclease-Cas2
MLVLVSYDVSTSDEAGRRRLRRVARLCEDRGQRVQNSVFECLVDAAQWVRFRADLLAEILPTEDSLRFYFLGNEWKRRVEHVGAKPSYDPQGPLIL
>NZ_CP048114.1|WP_162403301.1|4070868_4071900_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLHVMTQGAYLHRDGETISVKLGQESRLRIPVHTLEGLVCWGQVSCSPPVLSLCCESGVGISFLTEQGRFLARVQGPVSGNVLLRRQQYRLCDGADGALPTVRMIVTAKIANSRTVLLRGAREASDPQRSETLRNAAKRLQWIGLDASRAAGIDIARGHEGLAGQEYFSAFDAMINGDRDAFAFQGRSRRPPLDRTNALLSFIYALLRHDIESALESVGLDPAIGFLHADRPGRPSLALDLMEELRSPLADRLALTLINRRQVQASGFTVQDSGATLLEEPTRKQIVAAWQVRKQEEIEHPFLGERIPLGLIPYTQALLLARYIRGGLDAYPAFLWR
>NZ_CP048114.1|WP_162403302.1|4071904_4072540_-|CRISPR-associated-protein-Cas4
MQPELRRDESLPISGLQHLAFCPRQWALIHLEHAWADNRLTAEGHLLHERADLPGQTRRHDLRTVRGMLLESRKLGLSGRADIVEFHPQPFPVEYKRGKRKPNDCDLVQLCAQALCLEEMLQTDVPVGAIFYGEPRRRMEVTFSSQLRSRTEELTHEMHRLYRSRITPAAIQGPHCRNCSLNDLCLPQATGRLAIEDRWRAAQLRSLQSEE
>NZ_CP048114.1|WP_162403303.1|4072547_4073528_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSRPDFSQPTVLEKRYEIVLLFDVRHGNPNGDPDADNAPRVDPETGHGLVTDVAIKRKIRNFVGLTRNFESPNNIYVKERGILANEQRSAYRDLGIEPDGKSVDMARAWMCKNYFDVRTFGAVMTTGKAEVENDAAINAGKKPKGQTKLWNCGQVRGPVQFGFATSVDPITSIAHTITRVALTNPGDAGGEAVTDESGEEKAASGQMGRKHGVAYGLYRMHGFVSPFLAKQTQFTRQDMGTLLNALTNLFDHDRSATRGEMAVRGLWLFEHKDELGNAPAHKVLESVKLASVPSARSFAEYEAAGITAPANATQICDGGVTAWRYV
>NZ_CP048114.1|WP_162403304.1|4073524_4075393_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQSLRELAEREKLVDDPAFESKAVRWQIALDADGRFLNAYDTSAPEQLPEGSRKKPKMQAKLMRIPRRLGRSSGVKPDFLVDNAKYALGFAVDPAEAEDPRLLQCHAAFVELLRSAPQDVPELQAVFTFLANATSREACAKNLAEKGGFASNDLFCFEVAGEMLADIEELQTWWRTQREEADEGSLPMQCLVCGEFRVSARLHNSFQIRGASTSGVPLVSFNAGAFEKYGLSGNDNAPVCTGCMTAYTEALRRLTRAQYETPSGRKLRPLSTVLNGDTTAVYWAEGQSELPALLSAMNTDPKSIRELLDSPRKGSEFLLKDTSGFYCLILTGAQGRASVRRLHVDTVAAVSRNLLLYFRAIQTGGSSEHVPMPLSALLRSLVFKGELERLPSDLGVELWMTALFGLPLSPAFLAAVVTRIRVEQQDLQQGIWKVGRQRAALLQLYFISNRFDCTGNRRGENDSIEDLRMGLNHDIDDRAYVFGRIFATAERMQLLAQSQGLNRTLVDRFFAMASVRPQTVYAQLLSQYQYHYRKAMRDIPGVAKKANDLWLELQSKLDARGAFGKSFDFADQARFGLGYYHQKQDFVDQAMAAKAAREALALHDAEAITSTTDSNEETTA
>NZ_CP048114.1|WP_162403305.1|4075389_4076082_-|type-I-C-CRISPR-associated-protein-Cas5
MHSNDFLVRIQGTLACFTRPEFSTERVSYDLITPSAARGVLEAILWKPAIRWEIRRIALLNPVRYARFRRNEVNTRLSTQNALAEARGGKLMPDFYADEDRAQRNTVALRDVDYGIVARFHMTARAGEGDNLRKFEEMFERRLQKGQQHYQPYLGCREFPAFVEPWHGTGALEQESRMLGWMLHDIAFGTIRGKEVANQPRFFPAELRRGVVDVPAWEDAMPANPEALRV
>NZ_CP048114.1|WP_162403306.1|4076472_4078713_-|CRISPR-associated-endonuclease-Cas3''
MIYAHSRKEGDARPWQELSEHLSRVASLAESFAPRQLADLARVAGLWHDIGKFNPAFQQYIRHDSEISNEASSTPHVRSVPHSAAGAALALQRLPDNIGGRILALVIAAHHGALKSGRWLDTIEVSGSPLLQASRGGGLPAELEQQTPSLTGTPSALAVRILFSALVDADLLDTEEWAIGAPRTTNYDDIAVLHKSLDAFCFAKIETAQATAITEKEQRLATLRRNVFEACVQAADNSPGHFTMTVPTGGGKTLSGLAFALHHAERHGMKRVIVVAPFTSILEQTADVYREALGAENVIEHHSNISPLLDTDRNRQACENWDAPVIVTTSVQLLESLHAAHKRDCRKLHRVANSVILLDEVQTFPADLLEPIHAVLKRLVEDFHVTVVHGTATQPLLAGVAGRRRRSVLPPELCVSMKEIIPNPASLFDAVRDRFTLEILGDLQIPLDPAVLVDDVRKQRSALVITHSRRDARLLAEMLGSECLHLSAAMCATHRSQVLREARQRLDAGLPCTIVATQLIEAGVDIDFPVVYRALAGLETLAQAAGRCNRSMKLPHPGRFVVYRAGKVSNTDEEILESRAPKGTPQLGLEVALSEYFVRGLPDLHDPMLFPEYAGKVLRRLDTDRKGIRTSEEEFDFEEVAKNFRMIEEIHISVVAPYGDAPRLVRELRHGGPSRERFRALQRYTVGISKTIFSALFDSGWLEPVMQGDEADASLWCVREGDASPYEERFGFASHESDVMLRPLQV
>NZ_CP048114.1|WP_162404060.1|4079630_4080491_+|RraA-family-protein
MSRQQILFYTSDWKGERFPDGRPKIPDSVVQRAADVTMEDLWDFLQGKGYRCQYENGWQALHMDRPMVGRALTAQYMPARPDMVSAIKAEGKSEGRVGGTNMWPIHDLQKGDVYVADGFGKVIEGTLIGSNLGSGIAAHSQTGFVFDAGIRDAAENREIAHLNGFYRASDPSAWKDMTLTSINAPIRIGRATVLPGDLVVAKQDGIIFVPAILAAAAVASAEFTQLEDAFNFELNSAGKNGAEFEGGWNAAKYHAFTQWIDQHPEKLKMSRKEFDDELARRSGKGN
>NZ_CP048114.1|WP_162404061.1|4080487_4081822_-|PAS-domain-containing-protein
MGSPLIALVWWWLHTQGADESIVWLVLAVAAGAWAFMASSLMEQITRPLQTLANVIAALREDDYSFRARGASRSDAMGDLAFEINALASGLQAQRAGSLEAMALLERVLNSMQSPVLAFDPEGRLKLINEAAEQMLRVEAKNALGLPAETFDLAYLIKASDDDLFSLGEGQQAARWIVKRASFRLSGVPHSLIVLSDVSSALREEERLAWARLIRVLAHEINNSLAPIKSIAESLRIRVPREIPGENGSDFSRGLEVIESRAESLNRFLQAYRQLMGLPAPTLAPVSLSPLMQRVVQLETRLTVKMLPSDDIILWLDTDQIQQALINLLRNAAEAALGPDTGHDGVPCVEIGWKATPHEVVITILDNGPGLTNESNLFVPFYTTKPSGTGIGLVLAQQIVQAHRGSIELRNRNDGQGGCRAELRIPLISSAGSPGSGLPASAAV
>NZ_CP048114.1|WP_162403307.1|4081919_4083323_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MVEETTMKNTGEAAPEAPYKLLVADDQPHILEAIQFLLKPEGYQLEMVRTPALVMEAMSRDSFDGILVDLNYTRDTTSGQEGLELVAQIREMDAQVPIIVMTAWGNIELAVEAMRRGAGDFIQKPWENARLLSIVRTQIELYRSQRRAQWLEAENRILRAPGAPDFIATAPSMRSVVATMARIGPSDANVLITGEHGTGKEVVAQTLHRLSTRADRTLVAVNTGALPEGTFESELFGHVKGAFTDARADRIGRFELASNGTLFLDEIANIPVRQQAKLLRVLETGEMERVGSSKTQRVNVRMLSATNADLRAECAAGRFREDLLFRLNTVEISLPPLRDRREDIPLLAAHFLARHAGRYRRQLHGLEPAALQQMLQYGWPGNVRELDHTIERAVLMARGERIEAADMGLQSQRATSAHSLDDMDLETVESILIRKALARAGGNVSHAAEALGLSRGALYRRIEKYGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	MN694721	Marine virus AFVG_250M781, complete genome	45782-45815	6	0.824
NZ_CP048114_3	3.45\|4069426\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4069426-4069459	34	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	69213-69246	6	0.824
NZ_CP048114_3	3.17\|4067545\|35\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4067545-4067579	35	NZ_CP018001	Rhizobium sp. Y9 plasmid pY9, complete sequence	246600-246634	7	0.8
NZ_CP048114_3	3.25\|4068085\|33\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068085-4068117	33	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	360277-360309	7	0.788
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	NC_005342	Burkholderia phage Bcep43, complete genome	14614-14647	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	EF602154	Burkholderia phage BcepNY3, complete genome	13190-13223	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	AY369265	Burkholderia cenocepacia phage Bcep1, complete genome	14844-14877	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	NC_004333	Burkholderia phage Bcep781, complete genome	14643-14676	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	AY368235	Burkholderia cepacia phage Bcep43, complete genome	14614-14647	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	AF543311	Burkholderia cepacia phage Bcep781, complete genome	14643-14676	7	0.794
NZ_CP048114_3	3.32\|4068555\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068555-4068588	34	NC_005263	Burkholderia phage Bcep1, complete genome	14844-14877	7	0.794
NZ_CP048114_3	3.18\|4067613\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4067613-4067646	34	NC_018582	Gordonia sp. KTR9 plasmid pGKT1, complete sequence	55169-55202	8	0.765
NZ_CP048114_3	3.21\|4067815\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4067815-4067848	34	MK496764	Capybara microvirus Cap3_SP_319, complete genome	4402-4435	8	0.765
NZ_CP048114_3	3.30\|4068422\|33\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068422-4068454	33	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	299168-299200	8	0.758
NZ_CP048114_3	3.39\|4069026\|33\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4069026-4069058	33	NC_015264	Pseudomonas phage phiIBB-PF7A, complete genome	12506-12538	9	0.727
NZ_CP048114_3	3.57\|4070233\|33\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4070233-4070265	33	NC_048144	Microbacterium phage Schubert, complete genome	33359-33391	9	0.727
NZ_CP048114_3	3.58\|4070299\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4070299-4070332	34	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	329617-329650	9	0.735
NZ_CP048114_3	3.21\|4067815\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4067815-4067848	34	MN694317	Marine virus AFVG_250M684, complete genome	25887-25920	10	0.706
NZ_CP048114_3	3.58\|4070299\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4070299-4070332	34	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	35552-35585	10	0.706
NZ_CP048114_3	3.36\|4068823\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068823-4068856	34	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	392434-392467	11	0.676
NZ_CP048114_3	3.36\|4068823\|34\|NZ_CP048114\|CRISPRCasFinder,CRT,PILER-CR	4068823-4068856	34	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	948470-948503	11	0.676

1. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to MN694721 (Marine virus AFVG_250M781, complete genome) position: , mismatch: 6, identity: 0.824

--agtcggcctactggtggtctgcgatgtatcagca	CRISPR spacer
taggtc--cgtattggtggtctgcgttgtatcagca	Protospacer
  .***  * **.************ **********

2. spacer 3.45|4069426|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 6, identity: 0.824

ctgcaccgcgtcgatcatgccctgtcgtaccagc---	CRISPR spacer
ctgcaccgcgccgatcaggccct---gtaccaggcca	Protospacer
**********.****** *****   *******

3. spacer 3.17|4067545|35|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018001 (Rhizobium sp. Y9 plasmid pY9, complete sequence) position: , mismatch: 7, identity: 0.8

tgccggtgagcggaatctgcggcggcgactggcat	CRISPR spacer
atcaggtgagcgaaatcggcggcggcgactgggaa	Protospacer
  * ********.**** ************** *

4. spacer 3.25|4068085|33|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

gcgcgtcttccctgtaacggtcacaaaagctaa	CRISPR spacer
ttacggtttcccagtaacggttacaaaagctaa	Protospacer
 ..** .***** ********.***********

5. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_005342 (Burkholderia phage Bcep43, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

6. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to EF602154 (Burkholderia phage BcepNY3, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

7. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to AY369265 (Burkholderia cenocepacia phage Bcep1, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

8. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_004333 (Burkholderia phage Bcep781, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

9. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to AY368235 (Burkholderia cepacia phage Bcep43, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

10. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to AF543311 (Burkholderia cepacia phage Bcep781, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

11. spacer 3.32|4068555|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_005263 (Burkholderia phage Bcep1, complete genome) position: , mismatch: 7, identity: 0.794

agtcggc--ctactggtggtctgcgatgtatcagca	CRISPR spacer
--tcagcgaattctggtggtcggcgatgtaccagca	Protospacer
  **.**   * ********* ********.*****

12. spacer 3.18|4067613|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_018582 (Gordonia sp. KTR9 plasmid pGKT1, complete sequence) position: , mismatch: 8, identity: 0.765

tcgccgccctcggcgcaatcgctgg-atccaccga	CRISPR spacer
ccgccgccctcggcgcgatcgccggcaaccgcta-	Protospacer
.***************.*****.** * **.*..

13. spacer 3.21|4067815|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to MK496764 (Capybara microvirus Cap3_SP_319, complete genome) position: , mismatch: 8, identity: 0.765

-gtccagcaaccagcacgcttcaaaatatgcttca	CRISPR spacer
agaacaa-aaccaccacgcttcaaaatatcctcaa	Protospacer
 *  **. ***** *************** **. *

14. spacer 3.30|4068422|33|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggtcattacctctagccggtgcgccagcat	CRISPR spacer
cgtggtcagtacatctagccggtgcctgatgtt	Protospacer
******** *** ************ . *   *

15. spacer 3.39|4069026|33|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_015264 (Pseudomonas phage phiIBB-PF7A, complete genome) position: , mismatch: 9, identity: 0.727

gattggtcgatgaccgccttggagctggagagc	CRISPR spacer
atttggtcgatgacagccttggagttgcccgcc	Protospacer
. ************ *********.**   . *

16. spacer 3.57|4070233|33|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NC_048144 (Microbacterium phage Schubert, complete genome) position: , mismatch: 9, identity: 0.727

gacctcgtgcgtcatgtacttccacagtttgcg	CRISPR spacer
ccccgcgtgcgtcatgttcttccacatgaggag	Protospacer
  ** ************ ********    * *

17. spacer 3.58|4070299|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 9, identity: 0.735

tcggtaaggttctgcatgggctggctacggctgg	CRISPR spacer
gccgggtcgatctgcatggcctggctactgctgg	Protospacer
 * * .  * ********* ******** *****

18. spacer 3.21|4067815|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to MN694317 (Marine virus AFVG_250M684, complete genome) position: , mismatch: 10, identity: 0.706

gtccagcaaccagcacgcttcaaaatatgcttca	CRISPR spacer
tgcatccaaccagcacgcatcgaaatatgcagta	Protospacer
  *   ************ **.********  .*

19. spacer 3.58|4070299|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

tcggtaaggttctgcatgggctggctacggctgg	CRISPR spacer
cagccctgtttctgcatggcctggctaccgctga	Protospacer
. * .  * ********** ******** ****.

20. spacer 3.36|4068823|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 11, identity: 0.676

ggtgacctaacatcatcgccgccggcaaagctaa	CRISPR spacer
aactcgacgacatcatcgccgccgccaaagccaa	Protospacer
...    ..*************** ******.**

21. spacer 3.36|4068823|34|NZ_CP048114|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 11, identity: 0.676

ggtgacctaacatcatcgccgccggcaaagctaa	CRISPR spacer
aactcgacgacatcatcgccgccgccaaagccaa	Protospacer
...    ..*************** ******.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048114

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection