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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP048113 Chitinophaga sp. H33E-04 chromosome, complete genome 6 crisprs cas3,RT,PrimPol,DEDDh,csa3,PD-DExK,WYL 0 4 6 0

Results visualization

1. NZ_CP048113
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_1 1925313-1925411 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_2 3093828-3093954 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_3 5854849-5854953 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_4 5906257-5906385 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_5 5984998-5985132 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048113_6 7250572-7250724 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 NZ_CP024397 Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence 6762-6787 4 0.846
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 NZ_CP024216 Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence 6727-6752 4 0.846
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 NZ_CP024347 Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp23 6764-6789 4 0.846
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 NZ_CP024362 Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence 6739-6764 4 0.846
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 NZ_CP024319 Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence 29410-29435 4 0.846
NZ_CP048113_2 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder 3093904-3093929 26 MN693323 Marine virus AFVG_25M87, complete genome 57149-57174 4 0.846
NZ_CP048113_2 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder 3093853-3093878 26 MN693450 Marine virus AFVG_25M486, complete genome 25010-25035 5 0.808
NZ_CP048113_2 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder 3093904-3093929 26 KM359505 Prochlorococcus phage P-TIM68, complete genome 74939-74964 5 0.808
NZ_CP048113_2 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder 3093904-3093929 26 AP014388 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C45, *** SEQUENCING IN PROGRESS *** 27380-27405 5 0.808
NZ_CP048113_2 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder 3093904-3093929 26 GU071101 Prochlorococcus phage P-HM1, complete genome 127823-127848 5 0.808
NZ_CP048113_2 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder 3093904-3093929 26 MT254578 Bacillus phage Izhevsk, complete genome 24419-24444 5 0.808
NZ_CP048113_4 4.2|5906327|36|NZ_CP048113|CRISPRCasFinder 5906327-5906362 36 NZ_LR134421 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12 51385-51420 11 0.694
NZ_CP048113_4 4.4|5906332|36|NZ_CP048113|PILER-CR 5906332-5906367 36 NZ_LR134421 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12 51385-51420 11 0.694

1. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to NZ_CP024397 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp23, complete sequence) position: , mismatch: 4, identity: 0.846

agttgtatctgcagctggagtagcgg	CRISPR spacer
acttgtatctgcagctgcattagcgc	Protospacer
* *************** * ***** 

2. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to NZ_CP024216 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp23, complete sequence) position: , mismatch: 4, identity: 0.846

agttgtatctgcagctggagtagcgg	CRISPR spacer
acttgtatctgcagctgcattagcgc	Protospacer
* *************** * ***** 

3. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to NZ_CP024347 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp23) position: , mismatch: 4, identity: 0.846

agttgtatctgcagctggagtagcgg	CRISPR spacer
acttgtatctgcagctgcattagcgc	Protospacer
* *************** * ***** 

4. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to NZ_CP024362 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp23, complete sequence) position: , mismatch: 4, identity: 0.846

agttgtatctgcagctggagtagcgg	CRISPR spacer
acttgtatctgcagctgcattagcgc	Protospacer
* *************** * ***** 

5. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to NZ_CP024319 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp23, complete sequence) position: , mismatch: 4, identity: 0.846

agttgtatctgcagctggagtagcgg	CRISPR spacer
acttgtatctgcagctgcattagcgc	Protospacer
* *************** * ***** 

6. spacer 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 4, identity: 0.846

tactggagcaacagtagcagttgtat	CRISPR spacer
tactggagcaaaagtagcagatgagt	Protospacer
*********** ******** ** .*

7. spacer 2.1|3093853|26|NZ_CP048113|CRISPRCasFinder matches to MN693450 (Marine virus AFVG_25M486, complete genome) position: , mismatch: 5, identity: 0.808

agttgtatctgcagctggagtagcgg	CRISPR spacer
tgttgtagctgaagctggagtagccc	Protospacer
 ****** *** ************  

8. spacer 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 5, identity: 0.808

tactggagcaacagtagcagttgtat	CRISPR spacer
gtctggagcaacagcagcagttggtt	Protospacer
  ************.********  *

9. spacer 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder matches to AP014388 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S44-C45, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.808

tactggagcaacagtagcagttgtat	CRISPR spacer
agctggagcaaaagtaacagttgtag	Protospacer
 .********* ****.******** 

10. spacer 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder matches to GU071101 (Prochlorococcus phage P-HM1, complete genome) position: , mismatch: 5, identity: 0.808

tactggagcaacagtagcagttgtat	CRISPR spacer
gggtgcagcaactgtagcagttgtat	Protospacer
 . ** ****** *************

11. spacer 2.2|3093904|26|NZ_CP048113|CRISPRCasFinder matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 5, identity: 0.808

tactggagcaacagtagcagttgtat	CRISPR spacer
tgttgtagcaacagtagcagttgttg	Protospacer
*..** ******************  

12. spacer 4.2|5906327|36|NZ_CP048113|CRISPRCasFinder matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 11, identity: 0.694

aacagaacaattactatttatctctggatcttcgga	CRISPR spacer
attttcgcaattgctatttatctctagatcttcttg	Protospacer
* .   .*****.************.*******  .

13. spacer 4.4|5906332|36|NZ_CP048113|PILER-CR matches to NZ_LR134421 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 12) position: , mismatch: 11, identity: 0.694

aacagaacaattactatttatctctggatcttcgga	CRISPR spacer
attttcgcaattgctatttatctctagatcttcttg	Protospacer
* .   .*****.************.*******  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5140 : 33973 29 Bacillus_phage(60.0%) transposase,integrase attL 1916:1930|attR 34113:34127
DBSCAN-SWA_2 1596751 : 1606577 10 Stx2-converting_phage(50.0%) transposase,protease NA
DBSCAN-SWA_3 2580201 : 2617150 33 Enterobacteria_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_4 5356292 : 5362900 8 Caulobacter_phage(57.14%) NA NA
DBSCAN-SWA_5 5761703 : 5769882 8 Escherichia_phage(28.57%) tRNA NA
DBSCAN-SWA_6 6943768 : 6961922 24 Stx2-converting_phage(42.86%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage