CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP044973	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-1, complete sequence	1 crisprs	Cas14u_CAS-V,PD-DExK	3	0
NZ_CP044974	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) plasmid pPBL-H3_B4-2, complete sequence	0 crisprs	NA	0	1
NZ_CP044972	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) chromosome, complete genome	2 crisprs	csa3,RT,Cas9_archaeal,DEDDh,DinG	0	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044973_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044973_1

2399-2657

Orphan

Consensus_repeat	Method
ATCGTGCTGCTCCGCTAGTA	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP044973_1

>merge|NZ_CP044973|1|2399-2657|PILER-CR
ATCGTGCTGCTGCGCTAGTAGTTCGCCGGTTGCGGCCAGCTAACTGCATGACACCGCCCAGACCTTCGGCTGAGCGCAATCCGCTATCGTGCTGTTCCGCTAGTACCCTTGACCATCTGTAGATCGCTCCCGTCGACCGGCTTCGCGCCATGGGTCGTGCCGTTCCGCTAGTAGTGGGCGGGGAAACAATCACCACTGGGCGATGGACGCCGCAGGGAACGTGCGCGGCGCGAGTGGTAATCGTGCTGCTCCGCTAGTA

>NZ_CP044973|1|1|2399-2657|PILER-CR
ATCGTGCTGCTGCGCTAGTA	GTTCGCCGGTTGCGGCCAGCTAACTGCATGACACCGCCCAGACCTTCGGCTGAGCGCAATCCGCT
ATCGTGCTGTTCCGCTAGTA	CCCTTGACCATCTGTAGATCGCTCCCGTCGACCGGCTTCGCGCCATGG
GTCGTGCCGTTCCGCTAGTA	GTGGGCGGGGAAACAATCACCACTGGGCGATGGACGCCGCAGGGAACGTGCGCGGCGCGAGTGGTA
ATCGTGCTGCTCCGCTAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044973.1\|WP_159608833.1\|708_1731_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319252
NZ_CP044973.1\|WP_159608836.1\|4896_5526_+\|DUF429-domain-containing-protein	unknown	unknown	unknown
NZ_CP044973.1\|WP_159608842.1\|10312_10756_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NZ_CP044973.1\|WP_159608840.1\|8239_9316_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044973.1\|WP_159608839.1\|7232_8177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044973.1\|WP_159608841.1\|9312_10365_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP044973.1\|WP_159608832.1\|0_693_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222854
NZ_CP044973.1\|WP_159608834.1\|1905_2127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044973.1\|WP_159608843.1\|10764_11589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369935
NZ_CP044973.1\|WP_159608838.1\|6094_7018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378917
NZ_CP044973.1\|WP_159608844.1\|11585_12866_+\|conjugal-transfer-protein-TraB	unknown	unknown	gnl\|CDD\|237523
NZ_CP044973.1\|WP_159608837.1\|5574_6087_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044973.1\|WP_159608835.1\|3378_4425_+\|TrfA	unknown	unknown	gnl\|CDD\|115680

Protein	Function_ID	Function_description	E-value
NZ_CP044973.1\|WP_159608833.1\|708_1731_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319252	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid. Escherichia coli SopB acts in the equitable partitioning of the F plasmid in the SopABC system. SopA binds to the sopAB promoter, while SopB binds SopC and helps stimulate polymerization of SopA in the presence of ATP and Mg(II). Mutation of SopA inhibits proper plasmid segregation. This N-terminal domain is related to the ParB N-terminal domain of bacterial and plasmid parABS partitioning systems, which binds parA.	5.93771e-11
NZ_CP044973.1\|WP_159608832.1\|0_693_+\|hypothetical-protein	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	2.36619e-25
NZ_CP044973.1\|WP_159608835.1\|3378_4425_+\|TrfA	gnl\|CDD\|115680	pfam07042, TrfA, TrfA protein. This family consists of several bacterial TrfA proteins. The trfA operon of broad-host-range IncP plasmids is essential to activate the origin of vegetative replication in diverse species. The trfA operon encodes two ORFs. The first ORF is highly conserved and encodes a putative single-stranded DNA binding protein (Ssb). The second, trfA, contains two translational starts as in the IncP alpha plasmids, generating related polypeptides of 406 (TrfA1) and 282 (TrfA2) amino acids. TrfA2 is very similar to the IncP alpha product, whereas the N-terminal region of TrfA1 shows very little similarity to the equivalent region of IncP alpha TrfA1. This region has been implicated in the ability of IncP alpha plasmids to replicate efficiently in Pseudomonas aeruginosa.	1.2007e-30
NZ_CP044973.1\|WP_159608843.1\|10764_11589_+\|hypothetical-protein	gnl\|CDD\|369935	pfam08536, Whirly, Whirly transcription factor. This family contains the plant whirly transcription factors.	9.87758e-07
NZ_CP044973.1\|WP_159608838.1\|6094_7018_-\|hypothetical-protein	gnl\|CDD\|378917	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 265 and 420 amino acids in length. It appears that these proteins are distantly related to the PDDEXK superfamily and so these domains are likely to be nucleases. This family has a C-terminal cysteine cluster similar to that found in pfam01930.	1.12659e-32
NZ_CP044973.1\|WP_159608844.1\|11585_12866_+\|conjugal-transfer-protein-TraB	gnl\|CDD\|237523	PRK13825, PRK13825, conjugal transfer protein TraB; Provisional.	2.06697e-61
NZ_CP044973.1\|WP_159608841.1\|9312_10365_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	4.91464e-07
NZ_CP044973.1\|WP_159608842.1\|10312_10756_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	4.20188e-10

>NZ_CP044973.1|WP_159608834.1|1905_2127_-|hypothetical-protein
MKTALWQRLQLLALQHGWYRDMNAELLALQHGICSAKKGRNRRAGGWCKWLLSLNVANFNNITVLDSGIVRQS
>NZ_CP044973.1|WP_159608833.1|708_1731_+|ParB-N-terminal-domain-containing-protein
MSKKIKPNLSLGIRPNSDGNAMLDALGAGAKPTAVLLDTAPGASPITGEGHQAVAFNVKTMTVSDLRIGSTYELPLALLSRSDNNARVYYNPEEIDETAESIARNGQEVPALGYVKGDTVVIVDGQKRFNACADRKIPTLRVVIREAPASGAEEYEASRRINIERSAQTPFDDAVRWSEMLTRGDYKTQDELAQRLALTPSTVSKTLGLNRIPVPLRRLMIEHPQTATLAVAYEISNIFGKASETNMDELEAIAEDVANTVIKKGLGREQTIELVRSKIDGPKTRVRGDSVPVKYGQHKGAIKIVPSRGEFSMSFRGLSEEEIEELKRRVESILAGQQVL
>NZ_CP044973.1|WP_159608832.1|0_693_+|hypothetical-protein
MIIIIGAEKGGVGKSQIAFNLAAYIATHQTVPEGKKKRAARVMLVDTDTQRTSSKWGALRGTDGPLPFRVMEKTSNPAPEIVAIAQDYDAIVVDVGARDYAGLAELARIADLWIAPTRVGQGDLMSSLEMATALNTAHSKHKNGHIPLCFLINAVPGAWNSTEGQDAIEVLQAALPTGKVLQNSIRDRRVWRDAHKLGRHIFEMPPAARDKAEQEFLAVIQEAFTAYPQT
>NZ_CP044973.1|WP_159608835.1|3378_4425_+|TrfA
MSAKPIPKINNLDFEQLSQLVPKIGQSVKKVDLAGDVVEPTETKARVKRSRSYEESLEAVRARSAALLEKKQIDFEARVMQESFPWWDDEHRGVPNPFIRSGLFSVRTTTKREYLPNLHVSSLSNYEINYTGQELQQDDLSVWLSLINLARDNKMSDKVRFTGYQLVTDLGWRMHSESYTRAKESIARLKVTGINITSKDSSEGYSGSLIREYAWADADDNGKTKWMVRFEPRVSVLFMDDTTTMLEWETRKRIGPRAAVAMWLHAFYSSHREPIPLAVSKLHELSQSGAPLSTFRRNLKTALDKLVDVGFLEDFKIVNDTVYLKKAARIKAVTSSAPRTVKRLTTKR
>NZ_CP044973.1|WP_159608836.1|4896_5526_+|DUF429-domain-containing-protein
MHFNHSKAAVLVVGLDPGGNNAFGWVIAAGTFAAPRFLSGGVCSSAQAAITEVQNNLTCEMAAVGIDAPLFWSSSGDRRADVHVRRLVCAAGGQAGTVGHVNSLQGACLVQGAIAARLVNEKWPAAAITEAHPKALLRVCSDVHEFAAIQDLQGEGHHIRDAGLGAISALAMIEKRASWQDLAATEPEPLYPLGVQVAYWFPRRADPSR
>NZ_CP044973.1|WP_159608837.1|5574_6087_-|hypothetical-protein
MFPMNAGCYSWEGGTNDQVRVRLDFQPGYKLDVDVWWKSKDATPCMRLWVPLQHQSARFGDLTGNGYGSKLHRRGFGTFAVNLAVQVLQKTYEPDAPVSGILSNPSDPTDQKTRLEHARRMFWSQFGLTVSSGHYEQLAGTVGGLRCVHEGLVAGQFSRYLDLCNFSACK
>NZ_CP044973.1|WP_159608838.1|6094_7018_-|hypothetical-protein
MDTFTDFADALSMAAVATQEEQATVGFSPGSFLYKDLPAHVYHAGRESLSCSLLKPLLISPAHFKTALVQQYTSSSAKDFGSLLHLLLLQPHLAGQEVAVYPGIGNGRDRAYKSFLEANVLKLVVDEPTFSEARALTAKVQETTFKGRKIGLFLEEALTEVSIYFTEPTTGLKLRIRPDIYHPDMTLDLKSTRHGTVAKFGRDAVDMDYDLQAFMYSMGRSLYEGSATPKPFVFLAAETSAPHSIHRLTASESFLTNGAKKFQECLSIYKACTLTDHWPDLSSEGEIELDHWHQYTPSRAWMQGATV
>NZ_CP044973.1|WP_159608839.1|7232_8177_+|hypothetical-protein
MTQTNIQHAPGMNTLRPLDANLWQSQLDEAIRSSNDAQMWDLVRQQGDQEEAHEIVATRLSRLAFRIDNKSRYSELFLMPLIDHAGCVVDNADAWKRASHPIGEALDQWLPAKSSKIIFNGVRPFDWVGTWQSKIIRSHLHRAVPGYEQVRLTTVAEKILLPENAPRLGFVSMVLTSQLGWLSMGQATTLRDKRLRDVVRFSLQGEDDTPPCTVLAPDRVQFAVTDGVCVWLNELHQVVPITGWMVGLVPTTPDVVKITLSLADENVGLTQFTVRRHQIGLRGLDDILCVLNDIAPCMEQLKDGATPKKPSKRP
>NZ_CP044973.1|WP_159608840.1|8239_9316_+|hypothetical-protein
MNLNRISIAPFVQGVIRVDVDGEADTLKTSPNMVICARTHLPVEAGAPKLAPHPIQAKVLESVVANKEAGKVVEVPITMFFNKAENGIGIQYKAYDREKGTPLCAGDGKTAHRLATAPDQTQTLIEVACPGAETCAFANSEAAACRRQVKMVVQIVGQDDPLSVFEVRSGSLNNYRTLAAQLKIVERRYGGLRHVPLKLTMWQASNQASNYEAFDLMRLSIGAPTEAQAMEQAKKAREQVAADGLVDDMDDLFITGDERPTFAELMADDFQMVRDFYEESPVRPNAVKHSGRSPVRAAAIMDGGVSMASSMIADALRNANNASAAEHAASVPPVASQVAVPVASEEPVLDAIGEGTFL
>NZ_CP044973.1|WP_159608841.1|9312_10365_+|hypothetical-protein
MSQADITRLVVGEPITIALGQPVGQALAGARDLGSGDLSKTLRWSDGKWMGQESLLDKFTRAKRSDKLVIKPLGAASESSALIVVPPKVAAIGAAILVASAALVVATFAGIGPFVATAPEPVVEAEQPLPFAPPSEPSPVRSINEPFGTTAAGQTGLSIIQQVDGAGPGPSVAPLPFDGPSPTMPLVASVPDAPPMRLAPTKVAPSPPDRSASAREPDKDKAGKEDEPKRNRAVILDEGPDLNQKPASKPTTAAKPEATAAATVAKPATSPAVPQVAATAPAVPAPPALKPSAGLVAITPDGKAALFTNPSTRLPQQFKVGDKLPSGETIKSIDASNGKVTTATKEYGLD
>NZ_CP044973.1|WP_159608842.1|10312_10756_+|polymer-forming-cytoskeletal-protein
MPRTARSQPQRRSTVLTDRINKEEIVIDPVAMKIVNRIAPGSKFSGTLECSGGLFVEGEFSGTAIVTGGPLVLMQTGVMRGSINCDQNAFLFGEIGALENGDLSELECHGAAFMTETLRAKANITAGSFKSYDGFEVEGRIKTIKRS
>NZ_CP044973.1|WP_159608843.1|10764_11589_+|hypothetical-protein
MAMQQISARWVRQVLADRGITAPGLHQLEWYIADLDGNGVEALQKLLRSIQIGVESTLDLQAFLERVHAIVVPEQAGKGAETPSAAAPLPFARDRAKPAKTAQSASRPPVERLWVRDHGVHIYGGKAAMKVELDTLRSDVEEAVRYTVQVEMAGATAPRTYDWTKKIAFQFTRRELPLLAVRLLGYSAGPLRLTNHGPDHDKQIEIRDQGDSMFVVMKQGARTLALPVEPADVYQWLAIALVALQKNHPELDGTLLLEMVKRTGQIVATPRNEA
>NZ_CP044973.1|WP_159608844.1|11585_12866_+|conjugal-transfer-protein-TraB
MSTYSIGSRTLFIDAQHSQGAVAISMALLAFLLGVGLGWAGWGEGRAPALAAMLPLVVALSRTRAQAFMVAAGYSVGVLREVPAFISSWFDGDLRIGAGALLAYALIGGVTWCLGFSRSPKPWRGALAVCIGWTVALLPPVTIGIAGHPVIAWGTLAPGWGWVGVALSVAVPAALVYLLRAYRTAARYQAALLVALAALLATVGLLRDESHSSYAGSAVGVTTQWGKTSGKIDDVLDRVSSMGAMAKTLAAESRVTTVLWPESIVGEYNPALYPVLNIELLKPARASGQTHIVGMDLPLKDKRFENAAVAFYPDGRSSRVVARQPAPVSLWRPWDPVGSFTADWQGVNVLALGGGLRGAVIFCYEEYLPALYLINEARDDFEVYVAMTNTWAAESELASLIQTKHSLGMARLFGRPYLKAENRPAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044973_1	1.2\|2504\|48\|NZ_CP044973\|PILER-CR	2504-2551	48	NZ_CP044976	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence	2504-2551	0	1.0
NZ_CP044973_1	1.1\|2419\|65\|NZ_CP044973\|PILER-CR	2419-2483	65	NZ_CP044976	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence	2419-2483	5	0.923
NZ_CP044973_1	1.3\|2572\|66\|NZ_CP044973\|PILER-CR	2572-2637	66	NZ_CP044976	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence	2572-2637	6	0.909

1. spacer 1.2|2504|48|NZ_CP044973|PILER-CR matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 0, identity: 1.0

cccttgaccatctgtagatcgctcccgtcgaccggcttcgcgccatgg	CRISPR spacer
cccttgaccatctgtagatcgctcccgtcgaccggcttcgcgccatgg	Protospacer
************************************************

2. spacer 1.1|2419|65|NZ_CP044973|PILER-CR matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 5, identity: 0.923

gttcgccggttgcggccagctaactgcatgacaccgcccagaccttcggctgagcgcaat	CRISPR spacer
gttcgccggttgcggccagctaactgcatgacaccgcccagaccttcggctgagcgcaat	Protospacer
************************************************************

3. spacer 1.3|2572|66|NZ_CP044973|PILER-CR matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 6, identity: 0.909

gtgggcggggaaacaatcaccactgggcgatggacgccgcagggaacgtgcgcggcgcga	CRISPR spacer
gtgggcggggaaacaatcaccactgggcgatggacgccgcagggaacgtgcgcggcgcga	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17503 : 65637

Bacillus_phage(21.43%)

transposase,integrase

attL 35391:35406|attR 59121:59136

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159609099.1\|17503_17881_+\|transposase	transposase	A0A218MNE7	uncultured_virus	3.6e-25	44.6
WP_068673276.1\|17898_18405_+	hypothetical protein	NA	NA	NA	NA
WP_083944095.1\|18450_18759_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_068673274.1\|19210_19909_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_068673272.1\|19901_21080_-	muconate cycloisomerase family protein	NA	NA	NA	NA
WP_068673271.1\|21081_22161_-	maleylacetate reductase	NA	NA	NA	NA
WP_068673269.1\|22170_22506_-	hypothetical protein	NA	NA	NA	NA
WP_083944094.1\|22519_23068_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_159597437.1\|23126_24074_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_068673263.1\|24457_25204_-	hypothetical protein	NA	NA	NA	NA
WP_159597438.1\|25706_26354_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_032490114.1\|29674_30688_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_083944717.1\|30699_31344_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_159597439.1\|31340_32690_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_162147771.1\|32726_33479_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_102905962.1\|33606_35085_-	glutamine synthetase	NA	NA	NA	NA
WP_068685872.1\|35362_37711_+	indolepyruvate ferredoxin oxidoreductase subunit alpha	NA	NA	NA	NA
35391:35406	attL	NA	NA	NA	NA
WP_014386446.1\|39144_39486_+	hypothetical protein	NA	NA	NA	NA
WP_014386445.1\|39482_39824_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_051705518.1\|39915_41487_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.1e-95	43.3
WP_157103529.1\|44385_44562_+	hypothetical protein	NA	NA	NA	NA
WP_068685915.1\|44561_45020_+	hypothetical protein	NA	NA	NA	NA
WP_102906381.1\|45726_45936_+	hypothetical protein	NA	NA	NA	NA
WP_146039730.1\|46012_46984_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-39	37.5
WP_063599743.1\|47314_48880_+\|transposase	IS21-like element ISPpn1 family transposase	A0A2L1IVA1	Escherichia_phage	9.0e-14	26.4
WP_031652704.1\|48869_49676_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.1e-31	35.5
WP_068685009.1\|49957_51496_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-45	35.8
WP_146039730.1\|51824_52796_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-39	37.5
WP_068682758.1\|53842_55783_-\|integrase	tyrosine-type recombinase/integrase	A0A1D8EVX7	Mycobacterium_phage	8.6e-06	28.1
WP_068682756.1\|55792_56050_-	hypothetical protein	NA	NA	NA	NA
WP_068682754.1\|56491_58057_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.9e-20	27.2
WP_068682752.1\|58053_58824_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.4e-29	35.6
WP_068682762.1\|59074_60160_-	ParB/RepB/Spo0J family partition protein	A0A240F4U0	Ochrobactrum_phage	1.1e-05	37.4
59121:59136	attR	NA	NA	NA	NA
WP_068682750.1\|60944_62177_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	5.8e-40	31.7
WP_068682748.1\|62703_64074_+	replication initiation protein	NA	NA	NA	NA
WP_102906383.1\|64648_65056_+	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	1.3e-17	39.0
WP_068682744.1\|65055_65637_+	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	4.3e-30	41.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP044972

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044972_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044972_1

1484757-1485025

Orphan

Consensus_repeat	Method
GCCCCCACGCTCCGCCGCTTCGCG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP044972_1

>merge|NZ_CP044972|1|1484757-1485025|PILER-CR
GCCCCCACGCTCCCCCGCTTCGCGAGGTCCGCTGCCCCCCGAGGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAACGTTGCCCCCACGCTCCGCCGCTTCGCGGGTCGCTGCCCCCCGAGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAAACGTTGCTCCCACGCTCCGCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAACATTGCCCCCACGCTCCGCCGCTTCGCG

>NZ_CP044972|1|1|1484757-1485025|PILER-CR
GCCCCCACGCTCCCCCGCTTCGCG	AGGTCCGCTGCCCCCCGAGGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAACGTT
GCCCCCACGCTCCGCCGCTTCGCG	GGTCGCTGCCCCCCGAGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAAACGTT
GCTCCCACGCTCCGCCGCTGCGCG	GGTCGCTGCCCCCCGAGGGGGCTGTTTTGCCTTGGGGCGGCCCGGCGGCAAAACATT
GCCCCCACGCTCCGCCGCTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044972.1\|WP_159604757.1\|1487266_1487764_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259873
NZ_CP044972.1\|WP_159604767.1\|1496233_1497271_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270410
NZ_CP044972.1\|WP_159604761.1\|1490684_1491029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044972.1\|WP_159604737.1\|1474215_1475628_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP044972.1\|WP_159604759.1\|1489195_1490602_-\|TolC-family-protein	unknown	unknown	unknown
NZ_CP044972.1\|WP_159604739.1\|1475624_1476287_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP044972.1\|WP_159604763.1\|1491091_1491826_-\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NZ_CP044972.1\|WP_159604745.1\|1477185_1478259_-\|endonuclease	unknown	unknown	gnl\|CDD\|225249
NZ_CP044972.1\|WP_159604753.1\|1485121_1486447_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270238
NZ_CP044972.1\|WP_159608616.1\|1478286_1480107_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP044972.1\|WP_159604735.1\|1473649_1474219_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP044972.1\|WP_159604755.1\|1486517_1487249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225564
NZ_CP044972.1\|WP_159604749.1\|1482019_1482559_+\|DUF1415-family-protein	unknown	unknown	gnl\|CDD\|377792
NZ_CP044972.1\|WP_159604741.1\|1476378_1476642_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP044972.1\|WP_159604751.1\|1482665_1484753_+\|DUF1631-family-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP044972.1\|WP_159604747.1\|1480358_1482020_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP044972.1\|WP_159604743.1\|1476798_1477182_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380412
NZ_CP044972.1\|WP_159604765.1\|1491915_1492998_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176510
NZ_CP044972.1\|WP_159608618.1\|1494948_1496058_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226960
NZ_CP044972.1\|WP_159608617.1\|1487784_1489182_-\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259929

Protein	Function_ID	Function_description	E-value
NZ_CP044972.1\|WP_159604757.1\|1487266_1487764_-\|hypothetical-protein	gnl\|CDD\|259873	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily. Cupredoxins contain type I copper centers and are involved in inter-molecular electron transfer reactions. Cupredoxins are blue copper proteins because they have an intense blue color due to the presence of a mononuclear type 1 (T1) copper site. Structurally, the cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel. Some of these proteins have lost the ability to bind copper. Majority of family members contain multiple cupredoxin domain repeats; ceruloplasmin and coagulation factors V/VIII have six repeats; Laccase, ascorbate oxidase, and spore coat protein A, and multicopper oxidase CueO contain three repeats; and nitrite reductase has two repeats. Others are mono-domain cupredoxins, such as plastocyanin, pseudoazurin, plantacyanin, azurin, rusticyanin, stellacyanin, quinol oxidase and the periplasmic domain of cytochrome c oxidase subunit II.	2.06397e-51
NZ_CP044972.1\|WP_159604767.1\|1496233_1497271_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270410	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold. BztA is the periplamic-binding protein component of ABC transporter specific for carboxylic amino acids, glutamine and asparagine. The BZtA domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.76569e-133
NZ_CP044972.1\|WP_159604737.1\|1474215_1475628_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	2.55407e-63
NZ_CP044972.1\|WP_159604739.1\|1475624_1476287_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.2133e-75
NZ_CP044972.1\|WP_159604763.1\|1491091_1491826_-\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	8.00684e-65
NZ_CP044972.1\|WP_159604745.1\|1477185_1478259_-\|endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	8.60722e-09
NZ_CP044972.1\|WP_159604753.1\|1485121_1486447_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.85403e-32
NZ_CP044972.1\|WP_159608616.1\|1478286_1480107_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NZ_CP044972.1\|WP_159604735.1\|1473649_1474219_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000294725
NZ_CP044972.1\|WP_159604755.1\|1486517_1487249_-\|hypothetical-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.00233e-54
NZ_CP044972.1\|WP_159604749.1\|1482019_1482559_+\|DUF1415-family-protein	gnl\|CDD\|377792	pfam07209, DUF1415, Protein of unknown function (DUF1415). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.	5.91229e-93
NZ_CP044972.1\|WP_159604741.1\|1476378_1476642_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.03149e-08
NZ_CP044972.1\|WP_159604751.1\|1482665_1484753_+\|DUF1631-family-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	2.8262e-76
NZ_CP044972.1\|WP_159604747.1\|1480358_1482020_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP044972.1\|WP_159604743.1\|1476798_1477182_+\|hypothetical-protein	gnl\|CDD\|380412	cd07009, cupin_BLL0285-like, Bradyrhizobium japonicum BLL0285 and related proteins, cupin domain. This family includes bacterial proteins homologous to BLL0285, a Bradyrhizobium japonicum protein of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.61909e-13
NZ_CP044972.1\|WP_159604765.1\|1491915_1492998_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176510	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	3.63783e-113
NZ_CP044972.1\|WP_159608618.1\|1494948_1496058_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226960	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	8.98907e-141
NZ_CP044972.1\|WP_159608617.1\|1487784_1489182_-\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259929	cd13860, CuRO_1_2dMco_1, The first cupredoxin domain of bacteria two domain multicopper oxidase. This subfamily includes bacterial two domain multicopper oxidases (2dMCOs) with similarity to McoN from Nitrosomonas europaea. 2dMCO is a trimeric type C blue copper oxidase. Each subunit houses a type 1 copper site in domain 1 and a type 2/type 3 trinuclear copper cluster at the subunit-subunit interface. The 2dMCO is proposed to be a key intermediate in the evolution of three domain MCOs. Multicopper oxidases couple oxidation of substrates with reduction of dioxygen to water. These MCOs are capable of oxidizing a vast range of substrates, varying from aromatic to inorganic compounds such as metals.	2.22662e-70

>NZ_CP044972.1|WP_159604751.1|1482665_1484753_+|DUF1631-family-protein
MDADLQAFDACLKEALVQTREWVPRWLDRLNAGLKDKELSARHLNDKQAFVEARTALESRRDLIATHFLAALADAVGNAMPGNDFQAQSGKAVSFDELELMGDDQVQETVELARVQQIVNMTVDHEIVELTARLCTTLGMQVVTVEANPLRADVIVSALMKTLKGLNVGPAIRSRWLQTGAISLGNELQGLYTRLSNQLDRMGVEPAGYAVVQMPEGRPNSGFAPLGERSSPTQDEAAPGNDALLTLDHLHQLLVGNLGQPDDEPRREAGTTGAGNAMVRTLASEVVSLMLKQISADERLLPPVREMLQGMKPALLQVARTDPRFFADRQNPARRLLDAITEHSLAYTNEQDRGYAAFSRQVRGIIDTLQKPGSDLADRFPGLLQHFNRSQTEAMAPEQVQARGLAVKTLVRVEQRNLLAERVAAEFRSRNDFDRSPGVVRRFLTGPWAQVVAQARLEVSNATGLGTSEVPSMRYSDILPDLLWSTQLAVASLNRPRLVKVIPSLLRTLREGLDSIDYPREQTEAFFQTLMGLHEAAYKTQRAEPLQDVQPSQQFEDDTEPWMQPAEARDTCFMDDSLSDTQPSFVDTQPMQREWVELKAEMVAQPPSQLSAGTWVDLWQDGQAVRCQITWASPHGTLFLFSGANGRSLSMTRRGLDRLIEQDKLRVVADHGVVNQALDEVARQAWLNSAKTDGI
>NZ_CP044972.1|WP_159604749.1|1482019_1482559_+|DUF1415-family-protein
MQDVEAATRHWLEKAVIGLNLCPFARAVYVKNQVRIVVSQARHLDAFLDDLDRELDLLVNTPAEEIDTTLLVHATLFPDFEVFNDFLNVVDDVVAEHELEGVIQVAPFHPLFQFEGTEPDDVTNCTNRAPFPTLHLLREASVERAVDTEGGDADAIVERNLQTLRDLGADGWRALMSKD
>NZ_CP044972.1|WP_159604747.1|1480358_1482020_+|energy-dependent-translational-throttle-protein-EttA
MAQYVFSMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGTNGSGKSTLLKIMAGIDKEIEGEAIPMPGIRIGYLPQEPQLDPEQSVREAVENSMSGVRAAQKRLEEVYAAYAEEDADFDALAAEQAQLEAIISTSGTDGEHQLEIAADALRLPPWDARIGVLSGGEKRRVALCCMLLSKPDMLLLDEPTNHLDAESVDWLEQFLKRFSGTVVAITHDRYFLDNAAEWILELDRGHGIPYKGNYSTWLEQKEARLEQEQRTEDARTKAMKKELEWVRQNPKGRQAKSKARLARFEELSDVDYQKRNETNEIFIPVAERLGNEVFEFKNVSKSFGDRLLIDNLSFQIPAGAIVGIIGPNGAGKSTLFKLISGKEQPDSGEVKIGQTVRMAVVDQSRDGLAGEKTVWEDISGGLDMITVGKFQMPSRAYCGRFNFSGGDQQKRVGSLSGGERGRLHLAKTLAEGGNVLLLDEPSNDLDVETLRALEDALLEFAGCALVISHDRWFLDRIATHILAAEGDSQWVFFNGNYQEYEADKKKRLGEEGAKPKRMRFKALK
>NZ_CP044972.1|WP_159608616.1|1478286_1480107_-|DEAD/DEAH-box-helicase
MTFDDLNLAPAIVQAVREHGYETPTPIQAEAIPAVLAGRDLLGGAQTGTGKTAAFTLPLLQRLADGERAKNRFGGVAIRALVLTPTRELAAQVEESVRTYGKHLTLTSTVVFGGVGMNPQINAMKRGVDVLVATPGRLLDLQQQGFLDLSGVQMLVLDEADRMLDMGFIHDVKKILALVPKEKQSLLFSATFSDEIRDLASNLLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALLVHIINQHNWSQVLVFTRTKFGANNVAEFLTKNGIQAMALHGNKSQGARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFMMEIERFTKQRIPVQMFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMAAAAKAARTEMMQRVREKKAGEPQQARGNGGGGGQRQRPAGDGAQIDGPRGEGRRGGGQRANGNGGGNGQPRGNNGPRNAGGQGQRPPRQQADRGDRMDRAPREDRGPREDREPGAERQPGPNAHLGSLRIKEPRPRTANPGGQPDPLRTSIDAMRTGNRGGKGGGGGRGGPRNAGGGGGGGGGNADPLRTNYGRIR
>NZ_CP044972.1|WP_159604745.1|1477185_1478259_-|endonuclease
MPNDRTLPSPDAPSAFIGNGASPRWATLMVATCNVLNLAQPGRHFYEGQDPYSQTEFDRKVEWLGNRFKALNADVIAVQEVWDELALRAAVARSGLQYSSVVVPGAENGPGQVGAQGTPRVGIVTRLKLESVESLVNFPAAAVVQVPGIGTHTRFERPPLVATLRLKHGQPVCVITAHLKSKRPKYLEDASGKTIEDTDDPAVQALGSMRSLIMRASEALALRLKVVELLHRTRLPLVLMGDLNDSPHSVTTQLIAATSQVAYDKGARDNALFSAWDVQGEAALRRDVAYSHIHQGYPEVLDQVLVSEEFVASSRGAIGDVRRVEVFNDHLFEGRDRSRSDHGFVRALLRLRLPETA
>NZ_CP044972.1|WP_159604743.1|1476798_1477182_+|hypothetical-protein
MSTFQRVVLFTDTDGRARFREELVDLSEGSPAARLSPVLPASGLQLRQSPVGFRSQFHCTDAPQWLFVLRGQMQIGLQDGSSRTFGAGDHFYSADTLPAGASFDASVHGHWSRQVGDEPLVTAFVKV
>NZ_CP044972.1|WP_159604741.1|1476378_1476642_-|hypothetical-protein
MSKTLIALFSAALLSMGAAHAQTAAPAAKPAAAATAATPATPATPAAAAKPATPATPATAAVPAKKEDVKKCDPKTDKTCKEEAKKS
>NZ_CP044972.1|WP_159604739.1|1475624_1476287_-|response-regulator
MKVLLAEDDNMLGSGLERGLRMAGFTVDWVRDGLQAQSALRAQEYEVLLLDIGLPGQDGLQLLNWLRADGMPIPVLVVSARDAVSDRVAGLNLGADDYLTKPFDLDELIARVHALARRRHGRAQPEMQLGRLVVRPLRREALLGEQLLALSPREYDLLLALMERPGTVLSREQLENRLYSWQDEVASNAVEVHLHHLRRKLGSAWIKNVRGVGYKLVAAP
>NZ_CP044972.1|WP_159604737.1|1474215_1475628_-|two-component-sensor-histidine-kinase
MNSIRQRLLFWQITALVVTSTLGSVLTYQLAWNAFNRIRDYGLEQIAYSVVRHGVRPQSWPPLRPETPPLANAPPAAEAATPDIAAEELAEDLGQFVSQIWTPAGEVLYSSLESIGPPLQVPGFHVVQWDDEAWRIYTLADKRQIVQVAMTSSDRASSFAELVPWLLVPMGLLVLLLSLLIHTAVTKALAPLESLGRDIRRRDVKDLHPLETTAMPEELVPLGDALNQLLGRVDGLLASQRRVLADAAHELNTPLAVVKLQAQLARRSQESQREAALDELDRGIERSTHLVAQLLQMARLEPDVRERQPVPVRLDRLAAEVVAAFSAQAEAREIDLGLDTSDAATVLADPLDMRVLLDNLVDNALRHTPPGSRVDIRVEHDAGRVNLSINDNGPGIAEADRQRVLERFVRLNPQDATGSGLGLAIVANIVQQNGGLLTLASSPPGGLSVRVSLSAHPAGPSTPDRSGETA
>NZ_CP044972.1|WP_159604735.1|1473649_1474219_+|DUF4148-domain-containing-protein
MNTRLSVVAIALSTLVAGHALAADPAAAKTREQVRAELVEAQRNGTLIADGETGLRFNQVSPHLYPQATVVAKTRADVKAELALAQANGELIADGETGARFNEVFPAQYAATRTTAPAVEVVAQGKTRAQVRAELAEAQANGELVADGETGARFKDLYPNRYPVQATVQAKSRDDVRAQQVESRRNNGG
>NZ_CP044972.1|WP_159604753.1|1485121_1486447_-|ABC-transporter-substrate-binding-protein
MPKTLRYTLISLREMVVSFGPFALLTIALLGAAYWWLNPTPPKRVVLATGPDQSAYAEFGKRYAEALARYGITVELLSSEGSSANLELLRQGKADLGFVQGGTADIGYDEEDNISSLGSLFVEPLWLFYREDSARRLRNSSTVNNLAELSGWRVNVGTAGSGVPRLFSTLLDVNRVDPKQLRLSQLEQTPATVAFLGGKIDAVVFASAPESVMVQMLLQTPGVKLLDFAQSEAYSRRFGYLTPVVMPQGVVDLARNIPSRDVRLVASTTSLLSGAGTHPAILQLFAQTATGMHGGSGWFSKAREYPSLEHSEVPISPEASRAIKNGAPFLQRYLPFWLANLIERMWLAMGLILALALPLSRIVPPLYTFRIRKRVFRWYAELRDVEQRFEAAPDKAPELVEQLDAMESKVEKVVVPLSYTDELYALRNNIHLVRKKLLRKT
>NZ_CP044972.1|WP_159604755.1|1486517_1487249_-|hypothetical-protein
MQRRSLISAAAAITAAAVLPAWAQTPPALPVLQVWKDPSCGCCHDWVSHLQADGFQVQVFDTGNAAVRKRLGLPEKFASCHTGLIGGYAIEGHVNAREIRRLLTEKPKAIGLAVPGMPVGSPGMDGAVYGERRDAYDVVLVQPDGTGRVYQHYAGNTAGFKRTATGTEALPTTEGEVRKVDSAAGKITLKHGEIKNLDMPPMTMVFQANDPALLGKVKAGDKVRFTAMQVNGAYTVMSIEPLP
>NZ_CP044972.1|WP_159604757.1|1487266_1487764_-|hypothetical-protein
MTFQTRRSLLTLPLALALPRAFAHGDQHPKATGPVVKEQKPWGIAAEPAKARRTVDIRMSDDMKMTPNHLNVREGDTLRIRAVNVGQVLHEIVIGTQDELKAHAEMMLKFPNMQHEEPYMAHVPAGKQGEIVWTFNRPGDFEFACLIAGHFSAGMRGTIRVAPKA
>NZ_CP044972.1|WP_159608617.1|1487784_1489182_-|multicopper-oxidase-domain-containing-protein
MNRRNWLAGAAVGAVAATSVSRVALAAIPEPVQQTSANTAPPWTPPGVTGAGRPYNPVVTLNGWTAPWRMNAGVKEFHLVAEPVVREMAPGFMVNMWGYNGQSPGPTIEVVEGDQVRIYVTNRLPEHTTIHWHGQRLPNGMDGVGGLNQPQIKPGQTFVYEFTARRPGTFMYHPHADEMTQMAMGMMGLWITHPKAKHPLIEDVQRDYCFLLNAFDVEPGSMTPQVNTMLDQNIWSWNSRVFPGITPLVARLGERVRVRVGNLTMTNHPIHIHGIEFEVTGTDGGPTPKGSRWPEVTTDVAVGQMRQLEFVADEPGDWAMHCHKSHHTMGAMGHGVPTMIGVDHRGLVKPLQRAVPDYMVMGERGMADMGEMQMELPTNTFPMMTGTGPYGAIEMGGMFTTLKVRADQKTGDYSDPGVYKLPPGTQARLVDTGTAPQATRPAPSTNPTPPATSTVRKPAGGHDHH
>NZ_CP044972.1|WP_159604759.1|1489195_1490602_-|TolC-family-protein
MVVLRRLSPPFTHTRSCIAALSLICLSALGWPALAQPDNALQAADPATPASAVAPLALPATGATAPQERPADIARAREIWQRANERVAEFPRGHADLLRWEARNPGDAAPAAEGNSARPEPLDVAQALRLSLRLRPDLFTHADMNALDQAAVQVAYAGHVRDVQRAWVDAVSARQSWRHASELWDATRTGSELGRRMVVAGNWSQAKLMREQLTEASAWQVSVNAQGTALAAQERLAQLLGLWDAQAVARLGERLPASLPAPPPRAAPGAGLSETTLEAAVLRADPLLNLQRTEAQRELNAVSASRRQTWAAAVDAALVAMPDPGTASTPPHIGNLSLLRDHPLERATRAEASLLRAASERRSMARQAWAELQARHASALHAQNVVAQLQAALEQETVLRYNGMLQSSWDLLASARERMQSLDAALQARRDYWRAHADWQALLNGAGYAGPDTASNAGAGTTTTPAGH
>NZ_CP044972.1|WP_159604761.1|1490684_1491029_-|hypothetical-protein
MRHWFLVLMIALLPLRGWVGDAMAVEMLTLPAHATMVMEEHGTGHDHCACDEHATSAQNDGDHPHSACDVCNGPALAMAMPGVQTPPTVHSRLAPPADRFASTEAQRGIKPPIS
>NZ_CP044972.1|WP_159604763.1|1491091_1491826_-|DUF1223-domain-containing-protein
MPTTPRALPTLAALAGVFLTVGAAAQSCEIRSGPRPPAVVELYTSEGCSSCPPADRWLSTLKARDNVLALSFHVNYWNHLGWRDPFATPETTARQYRMKEALGGKHVYTPQVVLNGRDHRDWNGQSASSLGGLPAAAAPALRLSRQGNVVTAQIAATQGTELAGYWAVLQDGLVSKVTRGENAGEDLRHDHVVSRYQPVPSWSAAHGNSARLVLPAGSTQRVAFVVSDPTLTQPVQALVLQCPI
>NZ_CP044972.1|WP_159604765.1|1491915_1492998_-|glycerophosphodiester-phosphodiesterase
MTTQPPFTVQRLSWLRWSCTTALGLSVWCAGAALAFDAQGHRGARGLAPENTLAGIEQALAIGVTTLEFDVVLSAEGVPVVSHDTAPNPDITRDASGKWLQSRGKPFNQLSLEQIAGLDVGRINPASRYARDFQNQAPQDGERIPTLAALFERVKRLGAGHVRFNIELKLHPRRPDESPEPEAFVRAVASVINSQGMASRTTLQSFDWRVLKASQSIAPGLPLSFLSAQLARFNTLAEGEWTSGLKLADFEDAPTMVAAAGGRLWSPHFNDLSQATLARARSLNLRVIPWTVNEPNDMARLIDWGVDGLITDYPDRLRAVMQQRGMVPPPAVASPPATAGLAPPAPRAEPVRFGVAPDLR
>NZ_CP044972.1|WP_159608618.1|1494948_1496058_-|ABC-transporter-permease-subunit
MLFQLIALVVIALGIWFLAHNTQRNMQVRGIQSGFDFLGSAAGFDIGETLITYDPSESYGKAIWVGVLNTLKVAALGILFTTLLGVLLGVGRFSRNGLVRGICYGYVELFRNVPILLQLLMWYLIFIDVLPASNEAWNLSGLFFLSKGGFAFPYPAAGLGAATAGAAVGLVAVWLWLRRVQQRFEATGHDGDRLWTPIALVIACAFAGWAASGMPTAWNVPEQLVFMVDGGVSATPEFMTILVGLVMYTSAFVAEVVRSGIQSVSRGQDEAAAALGLNPRQKMKLVVLPQAMRVIVPPLTNQYLNLTKNSSLAVAIGYPDVVSIANTTINQSGRAVECIAIIMLVYLTTSLSTSLLMNWYNQRVAIKER
>NZ_CP044972.1|WP_159604767.1|1496233_1497271_-|transporter-substrate-binding-domain-containing-protein
MKMTTLKLAALGLSAAATLASMPAHAGKDLDAIKKRGELICGVNTALPGFSAADSQGKWSGMDVDVCRSVAAAVLNNPDKVRFVPLTAQQRFTALQSGEIDMLARNTTWTLTRDASLGLSFTGVNFYDGQGFMVPKKLNVKSAKQLKGATVCVQSGTTTELNLTDYSRANKLNIKPVVFEKLEAALAAYSSGRCQAYTTDASGLASSRAKDMAKPDDHLILPELISKEPLGPAVRRGDDEWAAIVRWVGFALLEAEEYEVTQANADQMKTSSTNPGVMRLLGAGTEDTGKLLGLDKEWAFRAVKATGNYGEIFERHVGPKTAIGLPRGSNNLWSKGGLMYAPPVR

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Crispr_ID: NZ_CP044972_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044972_2

3749070-3749197

Orphan

Consensus_repeat	Method
CCCCCACGCTCCGCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044972_2

>merge|NZ_CP044972|2|3749070-3749197|CRISPRCasFinder
CCCCCACGCTCCGCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCTGATTCGCCTTGGGGCGGCCCGGCGGCGAAACTGTTGCCCCCACGCTCCCCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCT

>NZ_CP044972|2|1|3749070-3749197|CRISPRCasFinder
CCCCCACGCTCCGCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCT	GATTCGCCTTGGGGCGGCCCGGCGGCGAAACTGTTG
CCCCCACGCTCCCCCGCTGCGCGGGTCGCTGCCCCCCGAGGGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044972.1\|WP_159607992.1\|3747506_3749057_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP044972.1\|WP_159607990.1\|3742605_3744864_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP044972.1\|WP_159608792.1\|3756481_3756907_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_CP044972.1\|WP_159607985.1\|3737964_3738855_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236725
NZ_CP044972.1\|WP_159607986.1\|3738841_3739501_+\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237396
NZ_CP044972.1\|WP_159607997.1\|3754500_3755988_+\|response-regulator	unknown	unknown	gnl\|CDD\|381089
NZ_CP044972.1\|WP_159607988.1\|3740654_3741071_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366732
NZ_CP044972.1\|WP_159607995.1\|3751745_3753326_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP044972.1\|WP_159607991.1\|3744914_3747221_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP044972.1\|WP_159608791.1\|3742156_3742609_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226429
NZ_CP044972.1\|WP_159607993.1\|3749207_3749903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236138
NZ_CP044972.1\|WP_159607998.1\|3756009_3756462_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP044972.1\|WP_159607999.1\|3756909_3759561_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP044972.1\|WP_159607994.1\|3750144_3751548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044972.1\|WP_159608000.1\|3759557_3760502_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270281
NZ_CP044972.1\|WP_159607996.1\|3753475_3754504_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|106506
NZ_CP044972.1\|WP_159607989.1\|3741097_3741799_-\|response-regulator	unknown	unknown	gnl\|CDD\|381150
NZ_CP044972.1\|WP_159607984.1\|3735782_3737900_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|236712
NZ_CP044972.1\|WP_159608793.1\|3760790_3761483_-\|cupin	unknown	unknown	gnl\|CDD\|380437
NZ_CP044972.1\|WP_159607987.1\|3739531_3740623_+\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	unknown	unknown	gnl\|CDD\|234828

Protein	Function_ID	Function_description	E-value
NZ_CP044972.1\|WP_159607992.1\|3747506_3749057_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.66044e-101
NZ_CP044972.1\|WP_159607990.1\|3742605_3744864_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	5.64718e-100
NZ_CP044972.1\|WP_159608792.1\|3756481_3756907_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.83989e-59
NZ_CP044972.1\|WP_159607985.1\|3737964_3738855_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	3.13827e-115
NZ_CP044972.1\|WP_159607986.1\|3738841_3739501_+\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	1.16175e-127
NZ_CP044972.1\|WP_159607997.1\|3754500_3755988_+\|response-regulator	gnl\|CDD\|381089	cd17534, REC_DC-like, phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains. This groups includes a modulated diguanylate cyclase containing a PAS sensor domain from Desulfovibrio desulfuricans G20. Members of this group contain N-terminal REC domains and various output domains including the GGDEF, histidine kinase, and helix-turn-helix (HTH) DNA binding domains. Also included in this family is Mycobacterium tuberculosis PdtaR, a transcriptional antiterminator that contains a REC domain and an ANTAR RNA-binding output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.04718e-58
NZ_CP044972.1\|WP_159607988.1\|3740654_3741071_+\|hypothetical-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	0.00020164
NZ_CP044972.1\|WP_159607995.1\|3751745_3753326_+\|PAS-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	1.20732e-94
NZ_CP044972.1\|WP_159607991.1\|3744914_3747221_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.50519e-84
NZ_CP044972.1\|WP_159608791.1\|3742156_3742609_+\|hypothetical-protein	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	3.09289e-35
NZ_CP044972.1\|WP_159607993.1\|3749207_3749903_-\|hypothetical-protein	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0.00010738
NZ_CP044972.1\|WP_159607998.1\|3756009_3756462_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.12222e-15
NZ_CP044972.1\|WP_159607999.1\|3756909_3759561_-\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.53386e-48
NZ_CP044972.1\|WP_159608000.1\|3759557_3760502_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270281	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.28301e-56
NZ_CP044972.1\|WP_159607996.1\|3753475_3754504_+\|PAS-domain-S-box-protein	gnl\|CDD\|106506	PRK13560, PRK13560, hypothetical protein; Provisional.	3.04031e-66
NZ_CP044972.1\|WP_159607989.1\|3741097_3741799_-\|response-regulator	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.14553e-23
NZ_CP044972.1\|WP_159607984.1\|3735782_3737900_+\|chemotaxis-protein-CheA	gnl\|CDD\|236712	PRK10547, PRK10547, chemotaxis protein CheA; Provisional.	0
NZ_CP044972.1\|WP_159608793.1\|3760790_3761483_-\|cupin	gnl\|CDD\|380437	cd20303, cupin_ChrR_1, Marinobacter hydrocarbonoclasticus anti-ECFsigma factor ChrR, and similar proteins; 2 heterologous tandem repeats of cupin domain. This family contains bacterial anti-sigma factor such as ChrR from Marinobacter hydrocarbonoclasticus. Anti-sigma factor ChrR is a member of the ZAS (Zn2+ anti-sigma) subfamily of group IV anti-sigmas. It inhibits transcriptional activity by binding to the ECF sigma factor E (sigmaE), an essential factor to mount a transcriptional response to a singlet oxygen and for viability when carotenoids are limiting. This protein family likely contains two distinct homologous functional domains belonging to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.4762e-51
NZ_CP044972.1\|WP_159607987.1\|3739531_3740623_+\|chemotaxis-specific-protein-glutamate-methyltransferase-CheB	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0

>NZ_CP044972.1|WP_159607992.1|3747506_3749057_+|methyl-accepting-chemotaxis-protein
MSNRMTLAKRLFLVNATMIGLLIIVTLTVWFMMDKVMAAADRISKTNVPQLELIAELELNVTRTSLQVRHAILSRNPQELQTTLDDIGAKKKFLFEKLDAFGKGMIDEEGSKAFAPLPGLMDEFWKQGTANVALIQEGKKEEAFAFLVDKTIPARNALLLPLAQEKKRQGERLHFRVEEVKEFSELDRDVVIGAVLIVALAMAGMTWYLNRVTQQLGADPDQLKRVADAVAQGDLSVTIELKPGDTTSTMSALHTMTQRLAQSVSRVRVGAEGVSNASSEIASGNSDLSGRTESQASALEQTSASMEELGSTVRQNADNARTANQLAQSASNLATQGGDVVGQVVTTMKDINDSSQKIAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAEAAKQIKGLISTSAERVGQGTALVDRAGVTMNEVVAAIRRVTSIMEEISNASAEQSAGVGQVGEAITQMDQATQQNAALVEQMAAAATGLSTQAADLVSAVAVFKLRG
>NZ_CP044972.1|WP_159607991.1|3744914_3747221_-|PAS-domain-S-box-protein
MTNLIQPPGDASLLLLGHYDPALVVLSVGLAVLAGVAAMVVSSQADRFRGVPALGMVLAGGLALGSGVWAMHFVGMLALDLCRAAGYRLDFTVLSMLPSVLASSLALWLLMLKRQSNATLWLGGGLFGLGVGAMHYTGMLALEGMDGLHFDPLLVAVSVVVAVLLAVFALWVRQALQRWRPGLPQAWRHAVSGVLMGLSVSAMHYCGMAAVHFAGTPSPGDASQAGSPWLMTGIAVTVAAISLLVVLLSMVIRLRALTAQLRYMQSAVASSHDAIVTKTTEGVVLTWNQGATDIFGYSADEMVGQPITRLFKPEDVHTEKDLLRRVLAGESVPNAEAVRLRKDGSEVHLSVTISPIRDEAGRIMGASKLAQDISDRKAIADLQLAKLQAEKIAEARGSFLANMSHEVRTPMNAILGFISVLLAGPLQTEQREQLKVVEDSARSLLRLLNEILDTAKLDKGLVEFEICPFSVDALVSELALVYGASARSRGIELQVAQQPGVAPCYEGDGFRIRQVLGNLLDNAIKFTPVGRVSLDIRAERGGLVFEVGDTGVGMPATYLDQIFEPFSQVDSSTTRRFGGTGLGTTICKKLVELMGGTIDVVSALHQGSTFTVWLPLPVASIEVQADLPAAGAVALPRLNILIADDVLLNMEVLRLLLGKAHHVTCVGGGAEAVRAAADERFDVVLMDMQMPEVDGLEASRRIRAQEKAEHRLPVPIIALTASALAQDMAAASASGMNGFVTKSSKLPVLLAEIARVLDLAKAVPEAVC
>NZ_CP044972.1|WP_159607990.1|3742605_3744864_+|response-regulator
MNAQPTGLSGWRVVHWVAAIGAALLVTLTPLSYIQWKQFNLMQDVAINQIDSIMWQAYQLERELSHLAYAVHASVDPASTVSGDDLVERYEVFVSRISLVTDMPRSDLLNTTKAYLDAMRQVNEFVAQADPVFEDPKGKLAQRDLRLALIRSIEQLEPALGDLTREANRATARFVDERNDQLRDQGRLVIGLAGVQAAVLLLFVVLLVRHLRRQVTQYERLQHITRELGVAKDQADAANHGKSVFLANMSHEIRTPFQGVLGMLNLLDETQLSGQQRDYVQTARDSAQHLLGVLNDILDVSTMESGTLSLAPEPVRLRTLVQEVEGLMRAAAREKGVSLEVDAAPDLPEWVMADPTRVRQILFNLLGNAVKFTHEGSITASVRPLADTPGGICITVQDTGMGMDAATVAQLFTRFYQADNSVRRRIGGSGLGLEISRNLARMMGGSIDVSSEPARGSLFTVKLVLPTTEAPAQAARSPEQTGQKRKLRVLVAEDHPINLKYMHILLDRMGHEAVFCENGQEALQLLELQRFDVVLLDFHMPVLDGLATTAAIRALDGTNKDIKIVLVTADVVNDTRKRALDVGVNEFASKPLQAQDLQRALEHCGLLDGSTVLVGDEAPVAPAPVMPEQQDIRSSAAGLIDSESYTEIVSMMPADTMDELLRTLFEPPEGSVHVLLAALASGQAAQIGYDAHKLKGTAMLLGFRALVRISGQIEQLAKQEGATFAPELSTQLRADMERTQQALRQFQTVSPA
>NZ_CP044972.1|WP_159608791.1|3742156_3742609_+|hypothetical-protein
MTFAQGLSAPQGKTILSVSGKIGVKNKGDIAVFDMAMIEALPQHSFTTRTPWYDKPVKFTGPLLADVLAAVKASGTTLSAVAINDYKINIPMQDVSQHGILMARLMDDKPIPVRSKGPLFVVYPFDNAAELRNSVYYERSIWQLKALDLQ
>NZ_CP044972.1|WP_159607989.1|3741097_3741799_-|response-regulator
MKILIVDDDEISRFPLVSLVDRMAGVTEIVQASDGEEAWSLLREGLRPSLCCCDLAMPHLDGVGLLQRVKGDRLLAPTPFVMISSSADRESVTCAVQAGAVGFIVKPYSFAVTTRTLERVLRESQAGLVEPVAQVARRLGITKFEVARLMRKLQSDVSVCADLLDEAGATAAPHMAEIQRMQGSCAMLGLKHCANLLRIRPGETPSLEDTCLTSLREVSLQLSLVMEGALLEA
>NZ_CP044972.1|WP_159607988.1|3740654_3741071_+|hypothetical-protein
MNPTTLRPSSAEADTWPELPDIDTAAARQCCGDSLELFKRLLGLLQKNYGGWSEQWLLATSTGHASDKAALCASLHKLRGSAGLMGAYRLALVAGQVEQSLKEDQEQPQAAVQRVGDVLHSLLVQIGAWQASVQASGG
>NZ_CP044972.1|WP_159607987.1|3739531_3740623_+|chemotaxis-specific-protein-glutamate-methyltransferase-CheB
MAKIKVVVVDDSALVRSLLTEIINRQADMTCVGAAADPLVAREMIRETNPDVITLDVEMPRMDGLEFLSRLMRLRPMPVVMVSTLTEQGAESTMRALELGAVDFVAKPRIGVSSGLQELAGDIVDKIRVAASAHVKRLPAAPAAAAAPQVSGTTEQPRAALPRVSTEKIICIGASTGGTEAIREVLMPMPADAPAIVITQHMPPGFTTSFANRLNTLCRIRVQEAQHGQRILPGHAYIAPGGHHLRIDRSGSNYVAVVEDTEPVNRHRPSVEVLFKSAARVLGPNALGIMLTGMGADGAQAMREMKDAGSYNYVQDEASCVVFGMPRMAIQCGAAHEVLPLSQIAPAVLTRLASAPAGVRHRI
>NZ_CP044972.1|WP_159607986.1|3738841_3739501_+|chemoreceptor-glutamine-deamidase-CheD
MSASDAILVARAAPARSNLDALKARKGKPGEASFFYHDHHFHQDAVKVLPGEYFVTDDDMMVMTVLGSCIAACIYDPRVRVGGMNHFMLPDGGNDAGGRYGSYAMELLINEMMKLGARRETMQAKVFGGGQVMHTFTTMNVGERNTQFVLDYLQTERIAVISKDVLDIHPRKVCYFPATGKAMVKRLAHSHPETLETQERKSSASVVAKAITGGSVDLF
>NZ_CP044972.1|WP_159607985.1|3737964_3738855_+|methyltransferase-domain-containing-protein
MLHPTTTPQRAARPVPPPRAAASEDGPLAEGREFVWSDADFSRIKALIYKKAGISLHDGKHAMVYSRVSRRLRETGHDSFKTYLDWLEHHDGAEWQEFINALTTNLTAFFREQHHFEILAQMFAAKRSHNWRIWCSAASTGEEPYSIAMTAQENLGTSGSYEIVNSDIDTKVLATAQRGVYKADGSKGLSPERMQRFFMRGKGSNEGFMRVKPELQKSLSFQTVNLIQDLPFREPFDVVFCRNVMIYFDAATQRAVLERIHRVMKPGGMLFVGHAENFSDARNLFALRGKTVYERL
>NZ_CP044972.1|WP_159607984.1|3735782_3737900_+|chemotaxis-protein-CheA
MGEMMNEGQSLANDIDLSQFYQIFFEEAGENLDQMEQMLLALDVEKADDEELNAIFRCAHSIKGGAATFGFADVAELTHQMESLLDKLRRHELNPTAAMVDVLLESSDALRLQLAHHQGRGNDTPVTSSLVARIYALANGEETEAAAPAPVLVAPVVVEAPAPAPARVINKPVAKATRELEIHIGPLDNVAQADGVAELFRDIPGLGTIEPLPCDQADKRVYRATTTSSDADLMDLFTFHVSKEEIRIIDCAAPADDAAVHAVPVLADGQDFGFFDGAPGVPAHAAVASTSAVTTATDNTAKPAAPKPEVRAAAPAAMESSTLRVSVSKVDQLINLVGELVITQAMLAQKSRELDDGANQPLLAGLADLDRNTRDLQEAVMSIRMIPMSVVFNRFPRMLRDLASKLGKKVELVTQGESTELDKGLVEKITDPLTHLIRNSCDHGIEMPEDRRAKGKSEHGTITLSATHEGGSILIEVRDDGKGLSREKLLTKAREKGIDAPDSLTDTEVWNLIFAPGFSTAEEVTDVSGRGVGMDVVKKNITALNGTVEIDSAEGYGMRVSVRLPLTLAIMDGMSVRVSDEVYILPLSSVIESFQIKPTDINTLAQGAQVVKVRDEYMPVIELERVFDVPRFEHNGASPIMVVVEADGQRVALMVDELLGQQQVVIKNLESNYRRVPNVSGATILGDGKVALILDTSSLVRRSRH
>NZ_CP044972.1|WP_159607993.1|3749207_3749903_-|hypothetical-protein
MINISTSSPVSWPTPPSAAVAPVVATPAVKPVQSVGQELQTDVQARREARRSPVKADDEASPAAPLLPRPAATDPQSQAAVQARQEAAAQRAEQALKKAETDKASHKKAMERLQEVFSNMWAASAAVVDQALGVDSRGEALPGNQSDTAPDLSAVAASTLSRRLLPGTKAAASPEQATADNMPWPLTPQAAEDAAAEAAPEVPGGEVIAYDEHGQSSLAPLEVGTLLSEKV
>NZ_CP044972.1|WP_159607994.1|3750144_3751548_+|hypothetical-protein
MKRSSDTVPTTPPSNRRALLLHHVPALLADPDVAAFLDGHGAEQIDHRHLERRFVLANEPALLLELIRVTRSDFVKLDCALDGMADPHSLPDGLLEYVVQHLPEVPWVTSLMVASADLTAPACARLQALLQAPGCTLTRLSFANCHFADPQVRFPTHAPTVQEMGWVNIYDAPPAALEMSQFLPAATTWTGLEVLRLMSLGAPINFGAVTQVLLANQRIRSMFLASDEVPAPDEHPAPDPQTDPALLFNALKQDRTGVTQLTLRLANEEHADFDDQCLQLVADCLATNTTLQALDIPGIQMCSGAALQQFTDDLWNNHTVTALAPLDVFNMRAPAPIRRNQAQHFRFTAEFILGSAEAFMRLMGTPRELGTLVGTHLAPTPVERVYCGPVMALLCKATHASGVQLRSACLREALKQHIRSNDSERCRALINTMVHTRLDLLPPDKAEVVALARARGRLNLLPPGYAG
>NZ_CP044972.1|WP_159607995.1|3751745_3753326_+|PAS-domain-containing-protein
MRTNLPVTHQEFVIPEGVTLVSTTDLQSRITYCNPAFVAVSGFDREELIGQPHNLVRHPDMPAEAFRDMWATLASGSPWSALVKNRRKNGDHYWVVANATPVMENGQAVGYMSVRTRPSREQVQEAEALYARMRSEHAAGNASMALHHGRVVRTGLAGRLQRMAQLTLGKRIGISSVGLAAAGLVIGEYAAAHGTGVHVAAGAVLLVIAALAALSLRSQILRPLAQSVAFANQMAAGDLSARFKGASGGEFGELARALNQLNVNLQAVVSDVRHEVEGVQVASNEIAAGNSDLSSRTESQASSLEETAASMEQLTSTVQQSANSSREASVLSQRSATVAREGNEAMSQVVTTMDDISKSSRRIGEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRTLSAAKEIKVLIDESAAKVSHGSQLVHSAGQTMANVVGSVEQVNGLIAEITGATHEQSMGLAQINQAVGQLDSVTQQNSAMVEELSAAASSLQAQARVMNDAVKIFRLDNRKQAV
>NZ_CP044972.1|WP_159607996.1|3753475_3754504_+|PAS-domain-S-box-protein
MTALRIALGEYLGQAFNRIPVAMIVVNKEGTIVRLNELAETTFGYASEELIGQKVEVLLPPRYRHKHPGYRSGFLAEPSARPMGAGRDLSGLRKDGSEFPVEIGINPVETGEGPMILSVILDLSERKLSEKRIQDALQQKELLLKEVHHRVKNNLQVVHSLLDLQALKISDSDMVDLLRDSQNRIRSMSLIHQTLYQSQDFAHVDFQRFLGELLPRLTESYGARSRQVRIDIRSTDVKLPINDAIPCGLIVNELVSNALKHGFPEDRRGTVLVEIGQDADQVVELAISDDGQGIPHDMDLGKSESLGLQLVNLLTRQLHGQLEVRRSDPTRFTLRFRMGDKT
>NZ_CP044972.1|WP_159607997.1|3754500_3755988_+|response-regulator
MNSSAHILIVEDESIVAFNLQQRLSHMGYHVPDVAVSGSETFELLSQSCPDLILMDIHIEGAMDGIDVAARIHETNPVPVIYLTAYSEDSTLERARKTRPYGYLIKPFSERELHATIQMALERHAVEKALAENQQLLQQALDAASMGTVEINTATGDLRLSPRSASLMGKPVDRALSLNEFLSIVDDADRPGIAVQMEERGVPMQKFSEEFRVLPAGQDVRWIKIDASPLTDNRVSGIVQDITERKTAELRLRKLNEGLEHLVNERTGELSQSLRELEAFTYSAAHDLRSPIRAIAGLSEVVREEFAEGLGDKGTRLLQTMGSSALRMGDLIDALLEMSRLSRSTMNLAEVDLSQMASEQMAALMEAEPGRLAQVKIAPGLRALADPVLVRCVLDNLLRNAWKFSSKKETTTIEVGCFAQDGCPVFFVRDEGCGFDMKFADRLFDPFNRLHSHSQYSGSGIGLSIVKRIISRHGGRIWTHSVPGEGSTFLFTLQA
>NZ_CP044972.1|WP_159607998.1|3756009_3756462_-|universal-stress-protein
MIKYLIPVDGSAQSMHAAYHAMRLVSSGLKARFVVANVQEAPNLYELVVAHDPDVLHQVSDAAGHDLVRPAVALLTSASQLVEAVVASGDPAHTLAELVESHECDAVIMSAHGGGESERGLGSVAQHMVQHCAVPVTIVRPAPLEAPDLT
>NZ_CP044972.1|WP_159608792.1|3756481_3756907_-|response-regulator
MPASPPPILLVEDNPMDLDLTLRAFNKKKLSNTIQIARDGEEALAYFARWEAGETMPAVILLDINLPKVNGLEVLQRLKSHPVFRRIPVVVLTSSRENSDLKTAYDLGVNSYIEKPVSFNKFIEVAEHIELYWCLLNERPV
>NZ_CP044972.1|WP_159607999.1|3756909_3759561_-|PAS-domain-S-box-protein
MKSLSSRLTLPGRWLAPLMLVLFALTASTINYVVQVRKVGDQVLDVETRRLRERLSVEQSRLSAQTNMENRALVRRLVGGLGLYSGMQHTYLLQPDGLVQASLVRSDIGQAFGEVLRQRADLAGVRTLVFNGPSDVAISVVHLPATQQLAGVVPFASGRRLIAVTDLKLPQAVRFADMQQEAVREGLLLLGLTILLALVVHLVWFRRAQHLALALKRMGNGELHSRAGLHGNDELAMIGTEADRMAERLQAGQAQLRHLFDLVDRSPVVVVEWRNEPGWPMSYVSQSVDQWGYQPSALLHGELRYADLIHPDDLARVTVEATRYFKDGPDDHRQEYRLRCADGSWVWVDDRTTLTRNAQGALTGISGVLLDITLQKEAQLAQQEQAEFLRLFYELPFIGMAISSPHSTRWIQVNSHLCEILGYTRDELLGRSWAEMTPQPDLDENLALRDQMAANLSDNYKMRKRFVRKDGSFVHTEIDVRAVRHADGSLKHLFSTIKDVTERLQAEAAIREQTDLLELAESMAGLGSWLYDTQTRSIWWSRQMYRNFGREPALGPPVDLKAYLDCIHPDDRARADHFMRSIPRNEEMITAEFRRHPDLGPLRWFRGSVQSKPLPTAGHYRYSGTVLDTTQLKLAQTSLEQTNAVLEQRVTERTAQLSRLNEELEAFSYTVSHDLKAPLRGIDGYSQLLQEEHGNQLGEEGRQFLARIRRGVQQMGDLISGLLDYSRMERRTMEHQQVDVPALVAQVIEGFSADIESTRVRLTLCLEPMVLQLDREGMAVVLRNLLGNAVKFSRAKDHPEVEIGARTEGGRRILWVRDNGVGFDMKYHDRIFGIFQRLQRAEDYQGTGLGLALVAKAVQRMGGRVWAESQPRHGATFFLEFPA
>NZ_CP044972.1|WP_159608000.1|3759557_3760502_-|ABC-transporter-substrate-binding-protein
MALLALAGCGEPATPPLTVGMNPWVGYDPLVLARDRGLTDPRQLRVVELPSASESLRHLRNGLLDAATLTLDETLRLADSGIDVRIVAMLDASDGGDVVMAAPRITSPALLKGEFIAVENSAVGALLLQRMLEKAGLTRADVRVTNLEVAQHLAALQAGTVAAAVSFEPLAGSMEVAGYRRIFDSSQIPGEILDVLVVRAEVMEQRPGSVDALLRAWYAGLNAFQLDIPGAAQSLALGTDLTPKAYEAVLGGLAFYSRDASERELSGNPAPLVAQASKVADALINIGLIQQAPRWDQLIDGSAMKRIRTSGSAP
>NZ_CP044972.1|WP_159608793.1|3760790_3761483_-|cupin
MDMNLNDDFSVRVTNFADAAPWLPSPLPGVDRRLLDRVGGEVARATSVVRYAPGARFDAHTHGGGEEILVLEGVFSDERGDHPAGTYLRNPPGSRHAPFSESGCVLLVKLWQFAADDLTPLRIDTHAEPWRRGLVPGITVLPLHDHDGVNTALVRWAPDTQFNPHRHSGGEEIFVLEGVLRDEHGVYPKHSWLRNPRGSQHTPFTGPEGALIYVKLGHLGAVFLEPAPAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

272087 : 281342

Acinetobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159602916.1\|272087_274325_-	molybdopterin-dependent oxidoreductase	A0A0P0I429	Acinetobacter_phage	3.8e-05	26.6
WP_159602918.1\|274336_274810_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_159602920.1\|275043_275952_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159602922.1\|275988_276627_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.1e-18	30.7
WP_159602924.1\|276636_277752_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	6.6e-27	40.3
WP_159602926.1\|277758_279009_-	LysM peptidoglycan-binding domain-containing protein	G9FHH0	Rhodococcus_phage	1.6e-05	39.0
WP_159602928.1\|279281_279803_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.8e-17	40.5
WP_159602930.1\|279799_280300_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_159602932.1\|280361_281342_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.7e-10	35.7

DBSCAN-SWA_2

477001 : 485073

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159603242.1\|477001_478501_+	anthranilate synthase component I	S4VT78	Pandoravirus	7.3e-37	29.3
WP_159608547.1\|478509_479091_+	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	4.8e-61	58.2
WP_159603244.1\|479087_480155_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_159603246.1\|480171_480810_+	LysE family transporter	NA	NA	NA	NA
WP_159603248.1\|480832_481876_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.1e-79	46.7
WP_159603250.1\|481889_482690_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.5e-60	52.1
WP_159603252.1\|482682_483363_+	uracil-DNA glycosylase	A0A286RUF9	Beluga_whale_alphaherpesvirus	2.7e-47	49.5
WP_159603254.1\|483882_485073_+	elongation factor Tu	M4M9V7	Vibrio_phage	2.6e-05	70.6

DBSCAN-SWA_3

1366740 : 1417392

uncultured_Mediterranean_phage(33.33%)

plate,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159604583.1\|1366740_1367529_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_159608609.1\|1367597_1370279_-	fimbrial protein FimV	NA	NA	NA	NA
WP_159604585.1\|1370525_1371653_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_159604587.1\|1371734_1372823_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_159604589.1\|1372876_1373527_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_159604591.1\|1373528_1373657_-	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_159604593.1\|1373669_1375091_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_159604595.1\|1375119_1376064_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_159604597.1\|1376208_1377519_-	citrate synthase	NA	NA	NA	NA
WP_159604598.1\|1377515_1377827_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_056271468.1\|1377844_1378549_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_159604599.1\|1378573_1380379_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_159604600.1\|1380383_1380749_-	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_159604601.1\|1380779_1381211_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_159604602.1\|1381374_1382184_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_159604603.1\|1382398_1383385_+	malate dehydrogenase	NA	NA	NA	NA
WP_159604604.1\|1383493_1384402_+	CoA ester lyase	NA	NA	NA	NA
WP_159604606.1\|1384468_1387072_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_159604608.1\|1387148_1390100_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA
WP_159604610.1\|1390099_1390444_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA
WP_159604612.1\|1390440_1392144_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA
WP_159604614.1\|1392140_1392632_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_159604616.1\|1392628_1392907_+	K+/H+ antiporter subunit F	NA	NA	NA	NA
WP_159604618.1\|1392903_1393290_+	Na+/H+ antiporter subunit G	NA	NA	NA	NA
WP_159604620.1\|1393290_1394142_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159608610.1\|1394252_1394672_+	hypothetical protein	NA	NA	NA	NA
WP_159604622.1\|1394733_1395906_-	OmpA family protein	NA	NA	NA	NA
WP_159604624.1\|1396260_1396584_+	collagen-like protein	NA	NA	NA	NA
WP_159604626.1\|1396614_1396773_+	DUF3309 family protein	NA	NA	NA	NA
WP_159604628.1\|1396938_1399818_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_159604630.1\|1399870_1400806_+\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	8.0e-10	29.3
WP_159604632.1\|1400834_1401836_+	AAA domain-containing protein	NA	NA	NA	NA
WP_159604634.1\|1401852_1402938_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_159604636.1\|1402934_1404002_+	VWA domain-containing protein	NA	NA	NA	NA
WP_159604638.1\|1404036_1405293_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_159604640.1\|1405289_1406276_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_159604642.1\|1406547_1407135_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_159604644.1\|1407131_1407950_+	hypothetical protein	NA	NA	NA	NA
WP_159604646.1\|1407995_1409759_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	2.7e-51	30.5
WP_159604648.1\|1409781_1410225_+\|tail	phage tail protein	NA	NA	NA	NA
WP_159604650.1\|1410244_1411870_+\|tail	phage tail protein	NA	NA	NA	NA
WP_159604652.1\|1411869_1412415_+\|tail	phage tail protein	NA	NA	NA	NA
WP_159604654.1\|1412417_1413371_+	hypothetical protein	NA	NA	NA	NA
WP_159604656.1\|1413388_1413559_+	hypothetical protein	NA	NA	NA	NA
WP_159604658.1\|1413580_1414672_+	hypothetical protein	NA	NA	NA	NA
WP_159604660.1\|1414668_1415355_+	type IV secretion protein Rhs	NA	NA	NA	NA
WP_159604662.1\|1415359_1417003_+	hypothetical protein	NA	NA	NA	NA
WP_159604664.1\|1417002_1417392_+\|plate	baseplate assembly protein	R9S7U7	Prochlorococcus_phage	1.7e-06	33.7

DBSCAN-SWA_4

4243271 : 4252331

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159608412.1\|4243271_4244342_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	5.5e-87	49.1
WP_159608413.1\|4244338_4245307_+	hypothetical protein	NA	NA	NA	NA
WP_159608414.1\|4245320_4246220_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.1e-23	34.2
WP_159608415.1\|4246230_4247118_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.4e-96	58.5
WP_159608416.1\|4247114_4247672_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.4e-55	58.6
WP_159608821.1\|4247674_4248670_+	NAD-dependent epimerase/dehydratase family protein	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	5.1e-87	52.0
WP_159608417.1\|4248666_4249806_+	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	4.8e-142	68.0
WP_159608418.1\|4249818_4250466_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_159608419.1\|4250587_4251253_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_159608420.1\|4251350_4252331_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	6.8e-84	46.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044973

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044974

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP044972

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection