CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP039809	Klebsiella pneumoniae strain C2660 plasmid pC2660-2, complete sequence	0 crisprs	csa3,RT	1
NZ_CP039811	Klebsiella pneumoniae strain C2660 plasmid pC2660-4-NDM, complete sequence	0 crisprs	NA	1
NZ_CP039808	Klebsiella pneumoniae strain C2660 chromosome, complete genome	1 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	13
NZ_CP039810	Klebsiella pneumoniae strain C2660 plasmid pC2660-3-KPC, complete sequence	0 crisprs	RT	3
NZ_CP039812	Klebsiella pneumoniae strain C2660 plasmid pC2660-5, complete sequence	0 crisprs	RT	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 96732

Escherichia_phage(19.35%)

protease,integrase,transposase

attL 75140:75199|attR 85317:86654

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152065.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_071527918.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011977741.1\|4916_5885_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_004197688.1\|6557_6815_-	hypothetical protein	NA	NA	NA	NA
WP_080895248.1\|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152070.1\|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004178088.1\|11193_13191_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14230_15438_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16866_17298_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17548_19024_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19016_19697_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19886_21272_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246153.1\|21300_21654_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_004152079.1\|21767_23060_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_004098958.1\|23070_26217_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|26303_26744_+	hypothetical protein	NA	NA	NA	NA
WP_162220125.1\|26870_29318_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	2.0e-84	35.9
WP_000843497.1\|29358_29556_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29589_30327_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30615_31065_-	copper resistance protein	NA	NA	NA	NA
WP_000925242.1\|31298_33116_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|33115_34012_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|34051_34432_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|34436_35366_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|35420_36101_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|36097_37498_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|37714_38149_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152086.1\|38380_38560_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|40302_40812_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|40861_41359_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|41690_42017_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004152093.1\|42013_42727_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|42735_43281_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004152095.1\|43356_43719_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004152096.1\|45615_46152_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|46184_46610_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|46622_47912_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|47959_49711_-	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152100.1\|49728_50091_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152101.1\|50140_50491_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|50848_51118_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|51105_51681_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|51711_52206_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|52249_52618_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|52651_52855_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|52903_53161_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|53236_53491_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|53666_53933_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|53920_54403_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|54614_55961_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004152113.1\|57803_58766_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_009483782.1\|58752_59502_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|59739_59937_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|59936_62732_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|62846_63416_-	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152118.1\|63450_63732_-	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004118208.1\|63975_64239_-	hypothetical protein	NA	NA	NA	NA
WP_004118209.1\|64253_64517_+\|transposase	transposase	NA	NA	NA	NA
WP_000019473.1\|65718_66699_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152692.1\|67907_68777_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152693.1\|68770_69781_-	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152694.1\|69789_70617_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152695.1\|70625_71489_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014386147.1\|71485_72313_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.0e-21	37.6
WP_004217321.1\|73168_73873_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
75140:75199	attL	NA	NA	NA	NA
WP_000427619.1\|75207_76212_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_044117068.1\|76503_77172_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_000018329.1\|77361_78177_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|78327_79032_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845039.1\|79523_80537_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|80681_81179_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|81290_81581_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|81586_82378_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|82541_82889_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|82882_83722_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_004883563.1\|83849_84122_+	hypothetical protein	NA	NA	NA	NA
WP_000427619.1\|84303_85308_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000184001.1\|85535_86741_+	chromate efflux transporter	NA	NA	NA	NA
85317:86654	attR	NA	NA	NA	NA
WP_000130000.1\|86751_87057_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|87283_88048_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|88540_89125_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|89124_90363_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|90359_91265_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_004217321.1\|91386_92091_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001553819.1\|92360_95258_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
WP_001398199.1\|95394_95796_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|95728_95986_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|96078_96732_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP039811

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27761 : 35538

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|27761_28466_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002904004.1\|28602_29463_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|29483_30245_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001067855.1\|31085_31790_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001549892.1\|32182_32422_-	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_000343760.1\|32523_33744_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_001549893.1\|33832_34495_-	recombinase family protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_000516402.1\|34875_35538_+	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP039808

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039808_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039808_1

4649111-4649205

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP039808_1

>merge|NZ_CP039808|1|4649111-4649205|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP039808|1|1|4649111-4649205|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039808.1\|WP_002888349.1\|4640740_4643098_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP039808.1\|WP_002888353.1\|4639869_4640565_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP039808.1\|WP_002888340.1\|4649346_4650972_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP039808.1\|WP_004219851.1\|4636157_4636328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039808.1\|WP_002888337.1\|4650961_4651660_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP039808.1\|WP_002888329.1\|4655166_4656453_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP039808.1\|WP_002888321.1\|4658650_4659499_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP039808.1\|WP_002888347.1\|4646938_4647478_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP039808.1\|WP_002888368.1\|4636509_4638219_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP039808.1\|WP_002888348.1\|4646204_4646864_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP039808.1\|WP_002888323.1\|4658268_4658646_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP039808.1\|WP_004147026.1\|4652763_4655112_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP039808.1\|WP_002888327.1\|4656458_4657448_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP039808.1\|WP_004151368.1\|4643285_4646192_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP039808.1\|WP_002888320.1\|4659754_4660234_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP039808.1\|WP_002888357.1\|4638229_4639732_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP039808.1\|WP_002888370.1\|4635326_4636172_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP039808.1\|WP_002888324.1\|4657444_4658266_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP039808.1\|WP_002888332.1\|4651692_4652520_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP039808.1\|WP_002888345.1\|4647657_4649022_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030

Protein	Function_ID	Function_description	E-value
NZ_CP039808.1\|WP_002888349.1\|4640740_4643098_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP039808.1\|WP_002888353.1\|4639869_4640565_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP039808.1\|WP_002888340.1\|4649346_4650972_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP039808.1\|WP_002888337.1\|4650961_4651660_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP039808.1\|WP_002888329.1\|4655166_4656453_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP039808.1\|WP_002888321.1\|4658650_4659499_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP039808.1\|WP_002888347.1\|4646938_4647478_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP039808.1\|WP_002888368.1\|4636509_4638219_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP039808.1\|WP_002888348.1\|4646204_4646864_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP039808.1\|WP_002888323.1\|4658268_4658646_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP039808.1\|WP_004147026.1\|4652763_4655112_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP039808.1\|WP_002888327.1\|4656458_4657448_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP039808.1\|WP_004151368.1\|4643285_4646192_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP039808.1\|WP_002888320.1\|4659754_4660234_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP039808.1\|WP_002888357.1\|4638229_4639732_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP039808.1\|WP_002888370.1\|4635326_4636172_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP039808.1\|WP_002888324.1\|4657444_4658266_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP039808.1\|WP_002888332.1\|4651692_4652520_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP039808.1\|WP_002888345.1\|4647657_4649022_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169

>NZ_CP039808.1|WP_002888345.1|4647657_4649022_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP039808.1|WP_002888347.1|4646938_4647478_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP039808.1|WP_002888348.1|4646204_4646864_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP039808.1|WP_004151368.1|4643285_4646192_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP039808.1|WP_002888349.1|4640740_4643098_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP039808.1|WP_002888353.1|4639869_4640565_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP039808.1|WP_002888357.1|4638229_4639732_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP039808.1|WP_002888368.1|4636509_4638219_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP039808.1|WP_004219851.1|4636157_4636328_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP039808.1|WP_002888370.1|4635326_4636172_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP039808.1|WP_002888340.1|4649346_4650972_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP039808.1|WP_002888337.1|4650961_4651660_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP039808.1|WP_002888332.1|4651692_4652520_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP039808.1|WP_004147026.1|4652763_4655112_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP039808.1|WP_002888329.1|4655166_4656453_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP039808.1|WP_002888327.1|4656458_4657448_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP039808.1|WP_002888324.1|4657444_4658266_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP039808.1|WP_002888323.1|4658268_4658646_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP039808.1|WP_002888321.1|4658650_4659499_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP039808.1|WP_002888320.1|4659754_4660234_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

448576 : 481834

uncultured_Caudovirales_phage(75.0%)

portal,tail,terminase,tRNA,head,protease,integrase,capsid

attL 466184:466201|attR 482179:482196

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|448576_449524_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|449538_450048_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|450176_451301_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|451272_451746_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|451771_452314_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|452318_452891_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|452894_453713_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|453709_453967_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|453942_454497_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|460292_460514_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|460807_463918_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|463930_465070_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|465448_466099_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
466184:466201	attL	NA	NA	NA	NA
WP_004150971.1\|466374_467601_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|467693_468635_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|468816_469101_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|469111_469891_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_157263200.1\|470393_470612_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-34	94.4
WP_001549752.1\|470604_470793_+	hypothetical protein	NA	NA	NA	NA
WP_004218267.1\|470869_470998_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|471096_471465_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|471461_471827_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|471826_473962_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|474304_474640_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|474688_475201_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|475464_476631_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|476682_477243_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|477244_478486_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|478482_478818_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|478814_479114_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|479113_479557_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|479549_479702_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|479832_480189_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|480172_481834_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
482179:482196	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1243493 : 1292637

Salmonella_phage(80.0%)

portal,lysis,tail,plate,coat,transposase,terminase,tRNA,head,integrase,capsid

attL 1242908:1242954|attR 1281263:1281309

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1242908:1242954	attL	NA	NA	NA	NA
WP_000019473.1\|1243493_1244474_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_062955148.1\|1244519_1245518_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1245520_1246150_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1246272_1246515_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1246547_1247057_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1247064_1247265_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1247228_1247567_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1247634_1247868_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1247867_1248095_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1248091_1248943_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1248939_1251324_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004178082.1\|1251801_1253289_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1253396_1253585_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1253596_1253830_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1253925_1254609_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1254595_1255675_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1255674_1256676_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1257197_1257467_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1257523_1258567_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1258566_1260330_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1260470_1261304_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1261320_1262373_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1262376_1263030_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1263125_1263590_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1263589_1263793_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1263796_1264012_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1263992_1264502_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1264506_1264890_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1264886_1265315_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|1265289_1265448_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|1265410_1265833_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1265825_1266272_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1266294_1267161_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1267255_1267828_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1267824_1268187_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1268173_1269082_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1269074_1269746_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1269747_1271697_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1271706_1272825_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1272876_1273950_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1274098_1275271_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1275280_1275796_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1275848_1276148_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1276162_1276282_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|1276508_1278905_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|1278901_1279387_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1279383_1280478_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1280544_1280763_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1280790_1281168_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1281771_1282254_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1281263:1281309	attR	NA	NA	NA	NA
WP_004188817.1\|1282364_1282841_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1282830_1283121_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1283187_1283529_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004145681.1\|1283510_1283651_-	hypothetical protein	NA	NA	NA	NA
WP_002914159.1\|1283676_1285338_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1285424_1286303_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1286427_1287018_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1287137_1288424_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1288443_1289235_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1289398_1290763_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1291022_1291271_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1291289_1291838_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1291869_1292637_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1397353 : 1450096

Salmonella_phage(40.0%)

tail,transposase,terminase,holin,integrase

attL 1390688:1390702|attR 1420793:1420807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1390688:1390702	attL	NA	NA	NA	NA
WP_004151980.1\|1397353_1398820_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1398887_1400465_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_062955102.1\|1400656_1401907_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
WP_063002073.1\|1401849_1402092_-	hypothetical protein	NA	NA	NA	NA
WP_004197356.1\|1402088_1402682_-	MT-A70 family protein	T1SA14	Salmonella_phage	6.3e-109	91.9
WP_062955103.1\|1402678_1403341_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
WP_048264082.1\|1403337_1403496_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
WP_009485475.1\|1403488_1403782_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_062955104.1\|1403891_1404140_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
WP_062955105.1\|1404188_1405070_-	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
WP_062955106.1\|1405066_1405888_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_004164029.1\|1405884_1406184_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004144290.1\|1406550_1407132_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004152538.1\|1407286_1407520_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1407666_1407876_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1407875_1408643_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1408639_1409425_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_048328152.1\|1409544_1409892_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_062955107.1\|1410084_1410495_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_032441402.1\|1410478_1410670_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1410666_1411311_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_072200041.1\|1411604_1412072_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_029602865.1\|1412071_1412365_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_050491799.1\|1412361_1412982_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
WP_032441458.1\|1412981_1413185_+	hypothetical protein	NA	NA	NA	NA
WP_023339258.1\|1413177_1413516_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_004178082.1\|1413612_1415100_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_032418540.1\|1415500_1415758_+	hypothetical protein	NA	NA	NA	NA
WP_032441400.1\|1415835_1416420_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
WP_062955142.1\|1416416_1417892_+	hypothetical protein	Q858H3	Salmonella_phage	6.4e-280	93.1
WP_004200550.1\|1417935_1418307_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_004141368.1\|1419060_1419267_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032441398.1\|1419281_1420964_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
1420793:1420807	attR	NA	NA	NA	NA
WP_004152446.1\|1420960_1421257_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441397.1\|1421259_1421940_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004200546.1\|1421954_1422941_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1422994_1423432_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_062955141.1\|1423442_1423784_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_004152441.1\|1423834_1424158_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955139.1\|1424157_1424763_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_062955138.1\|1424762_1427240_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_004152438.1\|1427239_1427704_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_032447858.1\|1427703_1428243_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_062955137.1\|1428253_1430788_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
WP_062955136.1\|1430787_1432698_+	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
WP_062955135.1\|1432697_1435454_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
WP_062955133.1\|1435930_1436227_-	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
WP_062955131.1\|1439054_1439318_+	hypothetical protein	NA	NA	NA	NA
WP_153233543.1\|1439358_1440624_-	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|1440605_1441586_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_000608644.1\|1442454_1443717_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_077265603.1\|1444825_1446142_+	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
WP_062955010.1\|1446228_1446633_+	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_162220112.1\|1446619_1446925_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	1.6e-39	82.4
WP_062955009.1\|1446914_1447544_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_062955008.1\|1447540_1448041_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_004152009.1\|1448227_1450096_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1782325 : 1789230

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072353998.1\|1782325_1783189_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-10	27.5
WP_004180550.1\|1783199_1783973_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004151134.1\|1784213_1785110_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1785352_1786714_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1787032_1787755_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_072353997.1\|1787751_1789230_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	28.3

DBSCAN-SWA_5

1832575 : 1844250

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043543.1\|1832575_1833982_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004180506.1\|1834208_1835624_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_039819506.1\|1835645_1837016_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
WP_039819536.1\|1837170_1838235_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
WP_023278825.1\|1838248_1839118_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-110	66.7
WP_004175259.1\|1839149_1840040_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_039819508.1\|1840054_1840609_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
WP_072353991.1\|1840788_1841955_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_158208765.1\|1842347_1843229_+	acyltransferase family protein	NA	NA	NA	NA
WP_000019473.1\|1843269_1844250_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1

DBSCAN-SWA_6

2841246 : 2850660

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160463746.1\|2841246_2842881_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_004151612.1\|2842935_2844201_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2844231_2845320_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2845406_2845667_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2845964_2846825_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2846845_2847607_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2847867_2848770_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2848781_2850047_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2850039_2850660_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3034062 : 3108083

uncultured_Caudovirales_phage(31.37%)

transposase,plate,integrase,terminase

attL 3099196:3099210|attR 3105205:3105219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902268.1\|3034062_3035148_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004151598.1\|3035111_3036866_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004151599.1\|3038537_3041963_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_002902254.1\|3041946_3043086_-	hypothetical protein	NA	NA	NA	NA
WP_002902252.1\|3043082_3043340_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_002902180.1\|3045789_3046320_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|3046387_3046918_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|3046986_3047517_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|3047584_3048115_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902172.1\|3048183_3048714_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902169.1\|3048777_3049557_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_004228410.1\|3049557_3051927_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902163.1\|3051928_3054583_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_002902160.1\|3054847_3055339_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_004151602.1\|3055343_3057050_-	OmpA family protein	NA	NA	NA	NA
WP_004151603.1\|3057046_3057736_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004218490.1\|3057732_3059076_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002902148.1\|3059085_3060630_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002902144.1\|3060672_3061164_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_004230193.1\|3061322_3061445_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3061633_3062614_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_002902136.1\|3063209_3063458_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902133.1\|3063680_3063965_-	hypothetical protein	NA	NA	NA	NA
WP_000343760.1\|3064064_3065285_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_002902131.1\|3065393_3065603_-	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|3065599_3066331_-	hypothetical protein	NA	NA	NA	NA
WP_014343022.1\|3066341_3069365_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7
WP_004152577.1\|3069420_3069618_-	hypothetical protein	NA	NA	NA	NA
WP_004231602.1\|3069592_3069724_-	hypothetical protein	NA	NA	NA	NA
WP_004231600.1\|3069844_3070009_-	hypothetical protein	NA	NA	NA	NA
WP_004152575.1\|3070483_3071257_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3071253_3072450_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3072449_3072803_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3072804_3073458_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004225248.1\|3073511_3073862_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3074114_3074300_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3074352_3074694_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3074693_3075716_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|3075718_3075946_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004225238.1\|3076021_3076435_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	8.1e-31	55.9
WP_004152566.1\|3076620_3078624_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3078613_3078766_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3078801_3079227_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3079230_3079671_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3079681_3080827_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3080830_3081271_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3081365_3081752_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3081751_3082258_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3082254_3082674_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3082642_3082924_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3082963_3083905_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3083916_3084411_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3084414_3085617_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3085668_3086217_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3086272_3087724_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3087961_3089362_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3089312_3089801_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3090166_3090487_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3090721_3091111_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3091107_3091638_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3091640_3091889_-	hypothetical protein	NA	NA	NA	NA
WP_004218026.1\|3091906_3092035_+	hypothetical protein	NA	NA	NA	NA
WP_004152168.1\|3092072_3092228_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3092294_3093077_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3093073_3093550_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004218023.1\|3093546_3094524_-	DNA primase	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3094510_3096169_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3096745_3096967_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3097064_3097733_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3097903_3098218_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3098210_3098399_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004218017.1\|3098772_3098934_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_004152157.1\|3098926_3099181_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
3099196:3099210	attL	NA	NA	NA	NA
WP_004146412.1\|3099248_3099371_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
WP_004152156.1\|3099367_3099793_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3099789_3099984_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3099980_3100808_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3100912_3101431_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3101436_3102147_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3102136_3102361_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004218013.1\|3102456_3102570_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	4.6e-13	100.0
WP_014343018.1\|3102812_3103046_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3103118_3103265_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3103224_3103467_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3103447_3104629_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3104825_3105374_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3105205:3105219	attR	NA	NA	NA	NA
WP_004152145.1\|3105572_3107105_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3107321_3108083_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3141016 : 3171895

Enterobacteria_phage(36.67%)

transposase,integrase,holin

attL 3140798:3140813|attR 3169201:3169216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3140798:3140813	attL	NA	NA	NA	NA
WP_002901815.1\|3141016_3141688_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3141874_3142702_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3142777_3144043_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3144044_3144464_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004178082.1\|3144543_3146031_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152776.1\|3146925_3147348_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3147940_3148645_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000679427.1\|3149260_3149608_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3149771_3150563_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001067855.1\|3151544_3152249_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004218565.1\|3152404_3152944_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|3152940_3153240_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_004232548.1\|3153889_3154579_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3154578_3154719_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3154715_3155354_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3155346_3156015_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3156011_3156179_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3156159_3156627_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004243011.1\|3156759_3157038_-	hypothetical protein	NA	NA	NA	NA
WP_004218530.1\|3157147_3158176_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3158383_3158629_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3158684_3158987_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3158983_3159832_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3159828_3160689_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3160774_3160996_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3161036_3161264_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3161375_3162074_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201109.1\|3162361_3163438_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3163519_3163723_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004219883.1\|3164033_3164159_+	hypothetical protein	NA	NA	NA	NA
WP_004135674.1\|3164151_3164346_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3164434_3164719_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3164734_3165580_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3165576_3165864_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3165865_3166546_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3166542_3166971_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3166967_3167630_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151900.1\|3167837_3169055_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	8.6e-121	51.9
WP_004151901.1\|3169201_3170092_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3169201:3169216	attR	NA	NA	NA	NA
WP_004140266.1\|3170091_3171084_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3171085_3171895_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_9

3299567 : 3387446

Klebsiella_phage(44.19%)

portal,lysis,tail,terminase,tRNA,head,integrase,capsid

attL 3326370:3326384|attR 3385257:3385271

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3299567_3300068_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3300184_3300631_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3300614_3301409_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014343001.1\|3301516_3302692_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3302723_3303416_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3303561_3304071_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3304075_3304414_+	DUF488 family protein	NA	NA	NA	NA
WP_004150780.1\|3304403_3304643_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150781.1\|3304943_3305957_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3306014_3306116_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_099119317.1\|3306115_3306190_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3306307_3306433_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3306492_3306756_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3306886_3307525_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3307614_3308529_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_014342999.1\|3308990_3309110_-	hypothetical protein	NA	NA	NA	NA
WP_004150784.1\|3309190_3310234_-	type II asparaginase	NA	NA	NA	NA
WP_004150785.1\|3310536_3311745_+	HD domain-containing protein	NA	NA	NA	NA
WP_004150787.1\|3311818_3313603_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3313609_3314500_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3314620_3316129_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150789.1\|3316162_3316327_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3316439_3317126_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3317523_3317703_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3317742_3318375_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3318941_3319139_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3319254_3320265_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004150793.1\|3320261_3321668_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3321723_3322611_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3322627_3323134_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150794.1\|3323160_3323655_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3323745_3323931_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3324552_3325746_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3325858_3326086_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004225560.1\|3326227_3326404_+	hypothetical protein	NA	NA	NA	NA
3326370:3326384	attL	NA	NA	NA	NA
WP_004150797.1\|3326522_3326846_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3326838_3327231_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3327227_3327941_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3328213_3328366_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023328083.1\|3328520_3330017_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_062955111.1\|3330085_3342790_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
WP_023328085.1\|3342852_3343446_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_047666390.1\|3343472_3343895_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_047666389.1\|3343936_3344647_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_023328087.1\|3344648_3345404_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_023328088.1\|3345400_3345739_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328089.1\|3345738_3349074_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_014228914.1\|3349306_3349672_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3349729_3350191_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_023328091.1\|3350222_3350624_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
WP_017880258.1\|3350620_3351010_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3350990_3351329_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3351325_3351643_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049010370.1\|3351623_3351884_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_023328094.1\|3351942_3353229_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_014907815.1\|3353306_3354227_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023279520.1\|3354263_3355523_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_017898992.1\|3355522_3355702_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_021462603.1\|3355695_3357417_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3357416_3357851_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3358099_3358531_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023297386.1\|3358527_3358851_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3358802_3359165_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_032749552.1\|3359491_3359716_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3359754_3360192_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3361141_3361492_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_032432826.1\|3361488_3361986_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160648.1\|3361985_3362201_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_004147999.1\|3363118_3363268_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3364005_3364209_+	hypothetical protein	NA	NA	NA	NA
WP_025861432.1\|3364452_3365055_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_062955112.1\|3365071_3366103_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_025861428.1\|3366302_3366695_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_077255782.1\|3366735_3367026_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025368263.1\|3367037_3367271_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_004178082.1\|3367349_3368837_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_062954975.1\|3369674_3371036_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_062954976.1\|3371209_3371923_-	hypothetical protein	NA	NA	NA	NA
WP_062954989.1\|3372274_3373144_+	hypothetical protein	NA	NA	NA	NA
WP_062954977.1\|3373232_3374624_+	hypothetical protein	NA	NA	NA	NA
WP_032443841.1\|3374972_3375413_-	hypothetical protein	NA	NA	NA	NA
WP_047667474.1\|3375426_3375891_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
WP_077265602.1\|3375883_3376888_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
WP_046622349.1\|3376947_3377502_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3377504_3377729_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_077257742.1\|3377817_3378255_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_040234937.1\|3378576_3378891_-	hypothetical protein	NA	NA	NA	NA
WP_023279538.1\|3379281_3379476_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3379518_3379863_+	transcriptional regulator	NA	NA	NA	NA
WP_062954978.1\|3380004_3382143_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.6e-99	42.7
WP_012542206.1\|3382195_3382441_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3382421_3383549_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_004150800.1\|3383666_3384917_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3385157_3385808_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3385257:3385271	attR	NA	NA	NA	NA
WP_004150802.1\|3385824_3386283_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3386339_3387446_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3497203 : 3553362

Enterobacteria_phage(40.0%)

portal,tail,plate,terminase,head,integrase,protease,capsid

attL 3495363:3495383|attR 3529887:3529907

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3495363:3495383	attL	NA	NA	NA	NA
WP_077273873.1\|3497203_3498358_-	phage late control D family protein	B9A7A9	Serratia_phage	6.6e-171	77.2
WP_072353964.1\|3498509_3499691_+\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	8.0e-156	69.4
WP_004187274.1\|3499691_3500207_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.6e-63	70.0
WP_072353963.1\|3500258_3500558_+\|tail	phage tail protein	B9A7B2	Serratia_phage	2.9e-30	72.7
WP_050554917.1\|3500578_3500731_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.5e-11	71.4
WP_072353962.1\|3500720_3503456_+\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	2.0e-242	80.6
WP_072353961.1\|3503467_3503956_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.9e-51	59.9
WP_072353960.1\|3504053_3505130_-\|tail	phage tail protein	Q37842	Escherichia_phage	2.3e-32	48.3
WP_064144972.1\|3505141_3505885_-	hypothetical protein	NA	NA	NA	NA
WP_072353959.1\|3505890_3508155_-	hypothetical protein	B5TAB2	Burkholderia_phage	5.7e-102	39.7
WP_072353958.1\|3508156_3508759_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.8e-42	44.8
WP_040209819.1\|3508751_3509651_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	6.2e-92	62.2
WP_004187254.1\|3509637_3510006_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.3e-29	57.4
WP_072353957.1\|3510002_3510587_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	8.7e-63	61.4
WP_072353956.1\|3510586_3511228_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.4e-45	49.8
WP_004187249.1\|3511224_3511683_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.1e-31	46.8
WP_072353969.1\|3511679_3511943_-	peptidase	NA	NA	NA	NA
WP_117328715.1\|3511827_3512223_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_072353955.1\|3512219_3512771_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.8e-33	42.5
WP_004187237.1\|3512767_3513049_-	hypothetical protein	NA	NA	NA	NA
WP_004187236.1\|3513039_3513240_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.0e-15	64.6
WP_032705909.1\|3513239_3513737_-\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	2.2e-59	69.7
WP_072353954.1\|3513839_3514700_-\|terminase	terminase	B9A7B6	Serratia_phage	1.0e-83	68.4
WP_060528036.1\|3514746_3515796_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	2.3e-106	53.9
WP_072353953.1\|3515819_3516653_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	6.5e-96	65.3
WP_060528038.1\|3516813_3518535_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	4.3e-227	66.5
WP_077273872.1\|3518555_3519590_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.0e-139	68.6
WP_072353968.1\|3519997_3520312_-	hypothetical protein	NA	NA	NA	NA
WP_072353951.1\|3520584_3520992_-	hypothetical protein	NA	NA	NA	NA
WP_072353950.1\|3521163_3523758_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.1e-192	51.7
WP_072353949.1\|3523750_3524767_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	2.4e-92	54.8
WP_158413321.1\|3524742_3524898_-	hypothetical protein	NA	NA	NA	NA
WP_072353948.1\|3525068_3526037_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.1e-73	49.1
WP_046624144.1\|3526045_3526624_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	2.7e-32	39.5
WP_046624145.1\|3526620_3526845_-	hypothetical protein	NA	NA	NA	NA
WP_004187204.1\|3526912_3527185_-	hypothetical protein	NA	NA	NA	NA
WP_004187203.1\|3527200_3527587_-	hypothetical protein	NA	NA	NA	NA
WP_071561575.1\|3527603_3527801_-	hypothetical protein	NA	NA	NA	NA
WP_023328159.1\|3527992_3528325_-	hypothetical protein	NA	NA	NA	NA
WP_004201485.1\|3528419_3528722_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.6e-26	61.0
WP_072353947.1\|3528809_3529817_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	7.6e-99	52.1
WP_004221448.1\|3529913_3531179_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
3529887:3529907	attR	NA	NA	NA	NA
WP_002898606.1\|3531313_3531763_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150831.1\|3531878_3532667_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002898602.1\|3532687_3532909_-	hypothetical protein	NA	NA	NA	NA
WP_002898600.1\|3533165_3533288_+	small membrane protein	NA	NA	NA	NA
WP_002898598.1\|3533406_3534798_-	APC family permease	NA	NA	NA	NA
WP_002898595.1\|3535151_3536573_-	glutamine synthetase	NA	NA	NA	NA
WP_004221445.1\|3536798_3537551_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_002898590.1\|3537576_3538134_+	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_004150832.1\|3538454_3539942_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_062954981.1\|3539944_3541225_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_004221441.1\|3541221_3542184_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002898577.1\|3542266_3543352_+	tartrate dehydrogenase	NA	NA	NA	NA
WP_002898574.1\|3543856_3545464_+	BCCT family transporter	NA	NA	NA	NA
WP_002898571.1\|3545500_3546625_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_004150833.1\|3546643_3548092_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002898475.1\|3548149_3549115_+	oxidoreductase	NA	NA	NA	NA
WP_002898472.1\|3549284_3549473_-	hypothetical protein	NA	NA	NA	NA
WP_004176625.1\|3549537_3549825_+	hypothetical protein	NA	NA	NA	NA
WP_002898466.1\|3549803_3550424_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004150834.1\|3550780_3552433_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002898458.1\|3552702_3553362_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6

DBSCAN-SWA_11

3638130 : 3734191

Salmonella_phage(55.74%)

portal,lysis,tail,plate,transposase,terminase,tRNA,head,protease,integrase,capsid

attL 3693656:3693674|attR 3734266:3734284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3638130_3639423_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3639513_3640857_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3640865_3641477_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3641599_3645853_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3645988_3646483_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004147787.1\|3646766_3646898_-	hypothetical protein	NA	NA	NA	NA
WP_002898019.1\|3647015_3647984_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3648098_3649865_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3649865_3651587_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|3651613_3652333_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3652686_3652905_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3653025_3655305_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3655335_3655653_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3655978_3656200_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3656276_3658217_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3658213_3659329_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3659475_3661134_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3661553_3662249_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3662364_3663264_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3663407_3665060_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3665070_3666039_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3666250_3666685_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3666836_3668555_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3668593_3669595_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3669605_3671048_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3671135_3672149_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3672145_3672976_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3673007_3674147_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3675024_3675540_+	lipoprotein	NA	NA	NA	NA
WP_032419144.1\|3675766_3676495_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3676515_3677247_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3677253_3677970_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3677969_3678638_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3678821_3679553_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3679595_3681068_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3681064_3681781_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3681859_3682987_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3683028_3683517_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3683574_3684420_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3684416_3685370_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_004176719.1\|3685380_3686547_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.3e-30	34.9
WP_002896368.1\|3686677_3687790_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3688138_3688618_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3688706_3689609_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3690430_3690718_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3690920_3691184_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3691190_3691574_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3691840_3693526_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_004226292.1\|3693517_3693640_-	hypothetical protein	NA	NA	NA	NA
3693656:3693674	attL	NA	NA	NA	NA
WP_000972391.1\|3693745_3693964_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3694055_3695156_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3695152_3695638_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_014342962.1\|3695634_3698028_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|3698254_3698374_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3698388_3698688_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3698740_3699256_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3699265_3700438_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3700576_3701653_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_004232615.1\|3701682_3701844_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3701882_3702614_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3702617_3705569_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3705570_3706170_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3706162_3707071_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_032441567.1\|3707057_3707420_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896177.1\|3707416_3707989_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_000019445.1\|3708348_3709329_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_004199112.1\|3709466_3709976_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3709972_3710419_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3710411_3710843_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|3710805_3710952_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|3710938_3711367_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3711363_3711747_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3711751_3712261_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3712241_3712457_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3712460_3712664_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_162220120.1\|3712663_3713128_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	7.9e-75	88.3
WP_000059191.1\|3713223_3713874_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3713877_3714936_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3714952_3715786_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3715928_3717695_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3717694_3718720_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3718781_3720524_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3720799_3721477_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3721591_3721825_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3721835_3722024_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004178082.1\|3722124_3723612_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150862.1\|3724087_3726502_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3726498_3727356_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3727352_3727580_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3727579_3727813_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3727880_3728222_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3728185_3728386_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3728393_3728903_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3728935_3729157_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3729302_3730181_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3730192_3731137_+	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|3731235_3732723_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014342959.1\|3733210_3734191_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
3734266:3734284	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4385824 : 4397477

Enterobacteria_phage(70.0%)

integrase

attL 4385676:4385689|attR 4389889:4389902

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4385676:4385689	attL	NA	NA	NA	NA
WP_004144574.1\|4385824_4386928_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
WP_002889940.1\|4386938_4388192_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4388544_4389735_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4389722_4390673_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
4389889:4389902	attR	NA	NA	NA	NA
WP_004152979.1\|4390672_4391098_+	hypothetical protein	NA	NA	NA	NA
WP_020802988.1\|4391444_4391594_-	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4391665_4392232_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4392249_4392495_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4392491_4393229_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_004903606.1\|4393528_4393666_-	hypothetical protein	NA	NA	NA	NA
WP_002889915.1\|4393770_4394037_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_072028197.1\|4394039_4394591_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_004219964.1\|4394635_4394815_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4394811_4395132_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4395143_4397477_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2

DBSCAN-SWA_13

4865481 : 4875006

Enterobacteria_phage(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4865481_4867815_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4867829_4868150_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4868146_4868374_-	hypothetical protein	NA	NA	NA	NA
WP_072093163.1\|4868370_4868913_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|4868915_4869182_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|4869742_4870480_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4870476_4870722_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4870739_4871306_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_014342868.1\|4871377_4871527_+	hypothetical protein	NA	NA	NA	NA
WP_004152201.1\|4872046_4873126_+	hypothetical protein	NA	NA	NA	NA
WP_004152200.1\|4873126_4873663_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4874025_4875006_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP039810

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 20837

Escherichia_phage(41.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|2542_2800_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|2732_3134_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199234.1\|6417_7299_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_014343469.1\|7315_7462_+	hypothetical protein	NA	NA	NA	NA
WP_013213985.1\|7574_8555_-\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_014343468.1\|8677_9151_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_001067855.1\|9190_9895_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014342101.1\|10303_10426_-	hypothetical protein	NA	NA	NA	NA
WP_013188475.1\|10405_11281_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_013362812.1\|11315_12284_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_001067855.1\|13701_14406_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|15516_16221_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000957857.1\|16898_17087_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|17178_17715_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|17897_18758_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|18927_19683_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067858.1\|20132_20837_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_2

77915 : 91721

Enterobacteria_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019445.1\|77915_78896_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_015493087.1\|79409_79805_+	hypothetical protein	NA	NA	NA	NA
WP_015493086.1\|79801_80413_+	DUF2913 family protein	NA	NA	NA	NA
WP_015493085.1\|80409_81360_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6
WP_040219232.1\|81506_81707_-	hypothetical protein	NA	NA	NA	NA
WP_022652286.1\|81760_82393_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.5e-07	31.9
WP_015493083.1\|82755_83961_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
WP_016479949.1\|83957_84929_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
WP_015493081.1\|85064_86336_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	6.1e-154	63.0
WP_015493080.1\|86335_86758_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_015493079.1\|86937_87609_-	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.1e-83	61.7
WP_002211749.1\|87967_88645_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_015493077.1\|88644_88866_+	hypothetical protein	NA	NA	NA	NA
WP_015493076.1\|88876_89296_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_015493075.1\|89349_90129_+	hypothetical protein	NA	NA	NA	NA
WP_015493074.1\|90533_91040_+	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	4.8e-09	31.8
WP_015493073.1\|91082_91274_+	hypothetical protein	NA	NA	NA	NA
WP_015493072.1\|91466_91721_+	hypothetical protein	H9C187	Pectobacterium_phage	5.2e-12	46.2

DBSCAN-SWA_3

122233 : 133390

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001568041.1\|122233_122935_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2
WP_014343518.1\|123136_123253_-	hypothetical protein	NA	NA	NA	NA
WP_001568040.1\|123371_123602_-	hypothetical protein	NA	NA	NA	NA
WP_013214012.1\|123664_124336_-	mediator of plasmid stability	NA	NA	NA	NA
WP_004152353.1\|124338_125310_-	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_014343519.1\|125440_125566_-	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|125558_127046_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014343520.1\|127358_127475_-	hypothetical protein	NA	NA	NA	NA
WP_001568036.1\|127452_127884_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_013214011.1\|127883_129155_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_011977819.1\|129236_130211_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_011977818.1\|130210_131416_-	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_004118283.1\|132523_133390_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039809

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP039811

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP039808

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP039810

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection