CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047918	Candidatus Saccharibacteria bacterium FS14P chromosome, complete genome	4 crisprs	cas2,cas1,cas9,csn2,DEDDh	3	18	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047918_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047918_1

90313-90528

Orphan

Consensus_repeat	Method
CCGGAGCCGACACCGACGCCAGAT	CRT

4 spacers

The CRISPR arrays of NZ_CP047918_1

>merge|NZ_CP047918|1|90313-90528|CRT
CCGGAGCCGACACCGACGCCAGATCCGACGCCGACTCCAACCCCGGAGCCGACACCGACGCCAGATCCGACGCCGTCCCCGACGCCGACTCCAACCCCGGAGCCGACACCGACGCCAGATCCGACGCCGACTCCAACCCCGGAGCCGACACCGACGCCAGATCCGACGCCGTCCCCGACGCCGACTCCAACCCCGGAGCCGACACCGACGCCAGAT

>NZ_CP047918|1|1|90313-90528|CRT
CCGGAGCCGACACCGACGCCAGAT	CCGACGCCGACTCCAACC
CCGGAGCCGACACCGACGCCAGAT	CCGACGCCGTCCCCGACGCCGACTCCAACC
CCGGAGCCGACACCGACGCCAGAT	CCGACGCCGACTCCAACC
CCGGAGCCGACACCGACGCCAGAT	CCGACGCCGTCCCCGACGCCGACTCCAACC
CCGGAGCCGACACCGACGCCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047918.1\|WP_138059308.1\|100207_101416_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP047918.1\|WP_162322283.1\|99132_100203_+\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|225364
NZ_CP047918.1\|WP_162371674.1\|97110_97344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371667.1\|86063_86870_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223155
NZ_CP047918.1\|WP_162371672.1\|92439_94599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_138059303.1\|95693_96431_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_138059294.1\|86987_87350_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|275385
NZ_CP047918.1\|WP_162371669.1\|87897_88095_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP047918.1\|WP_138059297.1\|88098_88659_+\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP047918.1\|WP_162371673.1\|96430_97111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371671.1\|90760_91843_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP047918.1\|WP_162371670.1\|88758_89484_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP047918.1\|WP_138059306.1\|97356_99117_+\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NZ_CP047918.1\|WP_162322282.1\|94650_95694_+\|type-IV-pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|227306
NZ_CP047918.1\|WP_162371666.1\|83838_86067_+\|DNA-translocase-FtsK-4TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224588
NZ_CP047918.1\|WP_162371665.1\|81562_83692_+\|RNase-J-family-beta-CASP-ribonuclease	unknown	unknown	gnl\|CDD\|223668
NZ_CP047918.1\|WP_162371668.1\|87429_87888_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NZ_CP047918.1\|WP_162371663.1\|79906_80803_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371664.1\|80858_81437_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP047918.1\|WP_162322280.1\|91933_92443_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047918.1\|WP_138059308.1\|100207_101416_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	3.43866e-117
NZ_CP047918.1\|WP_162322283.1\|99132_100203_+\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP047918.1\|WP_162371667.1\|86063_86870_-\|ACT-domain-containing-protein	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	1.05149e-86
NZ_CP047918.1\|WP_138059294.1\|86987_87350_+\|30S-ribosomal-protein-S6	gnl\|CDD\|275385	cd00473, bS6, Bacterial ribosomal protein S6. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	6.34709e-28
NZ_CP047918.1\|WP_162371669.1\|87897_88095_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	7.3579e-23
NZ_CP047918.1\|WP_138059297.1\|88098_88659_+\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	5.51903e-80
NZ_CP047918.1\|WP_162371671.1\|90760_91843_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP047918.1\|WP_162371670.1\|88758_89484_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	2.12355e-83
NZ_CP047918.1\|WP_138059306.1\|97356_99117_+\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	5.05247e-174
NZ_CP047918.1\|WP_162371666.1\|83838_86067_+\|DNA-translocase-FtsK-4TM-domain-containing-protein	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.85292e-148
NZ_CP047918.1\|WP_162371665.1\|81562_83692_+\|RNase-J-family-beta-CASP-ribonuclease	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	3.64371e-170
NZ_CP047918.1\|WP_162371668.1\|87429_87888_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	3.88303e-44
NZ_CP047918.1\|WP_162322282.1\|94650_95694_+\|type-IV-pilus-assembly-protein-PilM	gnl\|CDD\|227306	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].	1.04882e-40
NZ_CP047918.1\|WP_162371664.1\|80858_81437_+\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.54254e-76

>NZ_CP047918.1|WP_162371670.1|88758_89484_+|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MKQRLDKLMAERGLVRTRSEAESWIRLGRVRVNGVVISKAGAFVSDGAAIVLDAPERYVSRAGLKLASVARLLKLDFTDKIVLDAGSSTGGFTDYALQHGAKRVYAVDVGTDQLHPALRNDKRIELYEKTDIRQFTPKDTPDIVVIDVSFISLRDILPHIATIIDRHTIVVAMVKPQFEARRGQLGSSGVVKNDTVRRQIIRDFEVWSKKYFVITDKADSAVAGASGNRERFYRLGLASFR
>NZ_CP047918.1|WP_138059297.1|88098_88659_+|elongation-factor-P
MYQPTDLKKGVICQLEGAPYRVIDYNQKVMGRGGSIVNVKLKNLINGSVIPKTFKGQDKIEVAQVSNREVQYLYNDGSTYFFMDPTSFEQFELSADVVDEAADYLKEGDMLALQMFDDKVINVELPKNLYLEVTYTENVVKGDTTSSVLKDATLETGKVVKVPAFIEVGDIISVDTATGAYRERKK
>NZ_CP047918.1|WP_162371669.1|87897_88095_+|30S-ribosomal-protein-S18
MRKFRKDTPAYFDYKDVKALQRYINSYGQIEPIAKTGLSAKQQRQLAVAIKRARHLALMPFVSQG
>NZ_CP047918.1|WP_162371668.1|87429_87888_+|single-stranded-DNA-binding-protein
MAKGFNKVILMGNLTRDVEMRTTQSGQTVANFSLAVTRSWRDQSGAQQDQTSFINCVAWGKPGEIIAQYVGKGSPLLVSGRLDQRSYEDKDGNKRQAVEVVVEDFNFVGGGRGGDGSNYSALTSSDSSANKTKDVVIEDIDDKPIDLSEIPF
>NZ_CP047918.1|WP_138059294.1|86987_87350_+|30S-ribosomal-protein-S6
MKEYELTVLIHPDLEADLETPLDKVRKLVKDNGGEIVSEDNWGKKRLAYRIKGEDFAVYVAMDVKLPAEAPLKISNMLNITDDVIRYLLVKVDEKGRALLADAKKRADESADADDETSED
>NZ_CP047918.1|WP_162371667.1|86063_86870_-|ACT-domain-containing-protein
MLVAIQGQSGSFHEQVAKQWYGTSVDILPCTTFSDVFDAYSCGDADAIVAAVENTIYGSINEVYQLIEECDAPIVGEVKLTVDQMLIAQPGAKLSDIKEVYSHPVALSQCRAWLKKHLPQAELIEFFDTAGAVEFIKNEGNKHMSAIAGEQASKLYDTQILARKIQDGQDNITRFLILEPRATDQDASRASLVVTTSHKPGALVEVLQIFADAGVNLAKLQSQPIVGQPWRYKFFIVVDCAGKPLYSLIKQIEESDHQVTLLGEYRSC
>NZ_CP047918.1|WP_162371666.1|83838_86067_+|DNA-translocase-FtsK-4TM-domain-containing-protein
MAKKKTTRSRKNSRKQQPVPQHELPNGFWSQVAAITLIAFSILLIVSWFGGGGQFLNWVRDASLDVIGLATYVLPVISIYVAVQVFKVENNKLPAIMKFASLLLIIWFSGLFGLFRQEHKDSTGGVIGDALNGVMTGLVNVPVGVFIYVLLIVITLLFVLRLSFDDVGSMVKRAVGRGEKSEDEANVTVMRKASTADKPMSDFKLNAGVPTLSPEDRKKARLASLKNSVKPDKDAEEKAAMLAVSDPNWKFPNVELLEKKQSPADAGDIQQNAHIIQDTLREFSIDVEMEGANIGPKVTQYTLKPPAGIKLSRITALETNIALNLAASSLRMEAPIPGQKAVGIEVPNKKAADVRIRGILDSPEWRKADEPLSFAVGKDISGLPVVGELNKMPHLLIAGQTGSGKSVMINTLLCSLLYRNAPSDMKLILVDPKQVEMAPYQDIPHLLTPVIVEPEKTISALKWAVNEMERRYSLLAEEKVRDIKSYNEKVKNKTVGVEDEDGNIQQVDEGHMPYIVIVIDELSDLMMVAARDVEALVVRIAQKARAVGIHLVLATQRPSVDVITGLIKANIPARIAFTVASQVDSRTILDQAGAEKLLGQGDMLMKTAAMPKPKRIQGAWVMDSEVNKITDHLRIQSAPHYNDEIVSQPVQLNGKGGVVMNFDHEGGDDMFKDAVRVVLESRKASTSLLQRKLRVGYARAARIVEEMEEQGIIGPADGARPREVLIHSMDDLDGESSVGADD
>NZ_CP047918.1|WP_162371665.1|81562_83692_+|RNase-J-family-beta-CASP-ribonuclease
MGQRRLAKPQADDASKRPSQTKQKSNNTVLNATTTRKGEVFRAQRRTSEGVNMQASQHIINVPVNKSRYNGYDGRQFSLADQPKKPRAPRPTLKIIPIGGVGEMGIGKNMTAIEYDNDIMIIDMGFLFPGADYPGINYITPDITWLEENKHRIRGHVFTHGHLDHIGAFRHLIPKIPAPVYASKFTLGMLQRTMEETDGSFEPDYRELNPEAHDIVQICDSFSIELVRVNHSIPDSTAVVVRTPVGNILSSGDWRIEENPVDGKKFDFPRITEIQQKEGFLVFLNESTNCESDGTHTHGEFDIQHSMGEVMDKFPNSRVIISSFSSQLHRMQLILEEAQRHGRKVAFAGYSMIQNLEVALRTGAIKVPKDTVVKMEDIVKLPDSKITIVCTGSQGEFSAVLNRMASGAHKFIKIKSSDVVVFSSNPIPGNEKYVVRTVDGLMREGGEIIQNGKTHLTGIGPLHLSGHGYYDDHIRLINAVNPTYYIPNHGEFHMLVHNAELAEKECGIPRKNIFVCDAGDVIEFDHEGGKKIGRVQAGGVMYDDAGEVVSEVVLKDRIHMSQEGMFVVVLTVQRGTGRLLTSPDIISRGFIYLRDSEELMGMIRAYLKQKAARSFGGKYDIEVIKKEIKDEVTHILYDQTRRTPIVIPVINEIGVLSRQQKGGHAQKQNKSEQVEAPLMPAPSNRKFPRKQIPDTEVVEPRIKFGGRSY
>NZ_CP047918.1|WP_162371664.1|80858_81437_+|uracil-DNA-glycosylase
MTKYDEMEALRRKMIDLDVCPELRSQATQLVMGDGSLDADIVFIGEAPGKSEDEQGLPFVGAAGKFLDHMLSEAGMKRDDVYITNIVKYRPPNNRDPLNDEKAVFWPYLLKQLQIINPKVVVTLGRHSMEYFLPGKRISQIHGQPKRIQFGDRPLVVVPLYHPAAALYNGSMREILIEDFVRMPEIIAQIDR
>NZ_CP047918.1|WP_162371663.1|79906_80803_+|hypothetical-protein
MTKNKEKTSEVELADEVTDSSIDEVVVAPPKTPKQTNKGLIALLISLGVIGFLLIIAVVVYFVFFHISSADYRHASGQTKSLIEKYHKVAKASKEYMDEVADSDSSDDDITEKKEAYKKIFRDYQDGVNQLAHERAMRNGKIKTAYDTLVKKNKSFVDNITTLEQSAPALHKAVVSCDKQKIGNMDTDDLGKLVSAYDTAIGPCSENAKELAKVSNADVAKLGKKLGEYFGVMRERIVNMEAAYKANDRAKFEAEYKAFIAKAKSFEKDTDLTSVQEHQKSLGLDGELKALVKVIDQQ
>NZ_CP047918.1|WP_162371671.1|90760_91843_-|redox-regulated-ATPase-YchF
MSLSIGIVGLPNVGKSTLFNALTHNDILAANYPFATIEPNTGIVPVPDERLSVLAKMFNSEKITSATVTFVDIAGLVAGASQGEGLGNKFLANIRQCDAIIHIVRAFESDDIVHVENNIDPKRDIEIINTELILADLQTIETRLAKLQKEAKANPKAKLALESLSELKQDLESGTPVNLSKKVVQEHISDLHLLTAKPVIYVFNVNEETLVNEERKRELKALASESHALFICAQLEDELKGLNPSDAMELLESYDIDEPGLTQMIHAAYDILGLQSYLTAGQKEVRAWTIRKGATAPQAAGVIHTDFERGFIAAQVVDYYDLVTAGSESAAKAAGKVRTEGKDYVMQPNDVVEFRFNVSK
>NZ_CP047918.1|WP_162322280.1|91933_92443_+|hypothetical-protein
MKKKRVGIILSALIVVLVVVAGLVWYLFFRQPMSSSETKEPSTPEKIQLATVCSNDQIKLASSAIEPYNADVLRAVSTEIKGKSGHENDQNCMYILARYYIATGQLDLAAGAVNRIQALQTAGGRYSLLFKPPALNVSDLRETVRLQQSSQTSVKSTGYDLDDVDKEAP
>NZ_CP047918.1|WP_162371672.1|92439_94599_+|hypothetical-protein
MTHSIFRRFVIVVALSATSAVVVPATISALSTAQVEGALENGVQTAVNWDQGCRSHLSNYPNATFRGRGENNLRTQINRAASYVISMWLSRDGYGNASTPLTVDYGTSQIPLQINNVTFLCGPLVASDLGCSSSITGSRLVNDSSRWVSSASDANDRRPNRLGSGCMYPSKTFVRRYIVGLDIDRSQTTYGGRIEGGIGSHLFSLRQDSTRYWLSTPSRIRYVPDGPITRSGQIVVRMYYKSYSGYHSANEWAATKKCDWTVPDVTAAKSNLNINRCATNSVDLKIKIVLKQNFTLTPRIAVTPNAVPEGSGSAITVTPSVQNAGPTATDDSINWRVTRFDVAPGTNYSMGGSPDEPCTQITGEKPGSCTTIKSGSTQFNIGSTPLEVLSNTIAPDVPAGTRVCYVTSVEKGSTANPTWKHSSVDCVRVERIPLVHVIGNDARVGSGFFNTADARSKIVGSVSTAGGSTGEYGVIAPGAVDSFSSAAGAINGSSAAQSTWSGLTFANSFSTAPTCAPSFGCFGSVGKIPKAAEFFTSPANKNIIEQCNLGAQNVTLSALGSYTCIGGNRLNTPQHDIGSYRRSTVIYTTGNVTIDKDMVYSQDPLQGDNEIPQLVIVANNITVSEPVQRVDAWMIARGELATCNIAPPLTVSQCNKQLKTNGPVMASRLRLNRTYYNSTSKDAAERMTLRPSSYVWANQLVRKRGAWQTAYITELPPRY
>NZ_CP047918.1|WP_162322282.1|94650_95694_+|type-IV-pilus-assembly-protein-PilM
MNIFKGMGDFFALDIGTNAIRVVQLKKAGNGWALDHYGYAPIDSKLTSSDSEEARRKVGEVIMTAVGQSGIKSKNVVIGLPSSKTFTTIIDVPMASDAELRATMKYQIEQYIPMSIEDAKVDWALLGGSLRAQNQQEVLLSSVSRTYSEERLELVEALGFNVIAAEPDPIAMVRALTSPGMAGAVLQLDMGESSTDIAIVYGDSPRLIRTIPTGINSLVKATVSNLNVQEDQARQFILKFGLASDRLEGQVLRALETTLDSFAAEITKSIKFFETRYPSVSIDGVFLAGFAATIPQFDSYLAGKVSKPVHVADPWQSIQMSENDRKQLSPVATEFATVIGLAKRSVE
>NZ_CP047918.1|WP_138059303.1|95693_96431_+|hypothetical-protein
MIQINLVPDVKQEMIRAQRMRNITISCSIITGMAAGGIVLALAIILGSQAVYEAATSGRIDREYKQLAATKDINAALTIQNQLKQISGVNDKKSINSRLLDAIAAINPPAPNSVKLSKVTLDPAEHRLTLEGSTAGGYTATEVLRKTILNTKVISRPTQQTGVSPSEQALTDKVTLQDTSYGLDADGQRVVRFTIVFNYPEGLFDNTMSDVQIKTPDAKIDVTDSKSRVPDTLFSAPATSQKEDK
>NZ_CP047918.1|WP_162371673.1|96430_97111_+|hypothetical-protein
MPSQILSPKRKAISDSSRAMFIWIAAMSAVVGVCAVVAIFLARQIEFKGRVVGEMTKTADTLAKNNKVAKELTSNVGVLETNASLNSIKANSDENALQVVLDALPADRNPLALGASLQQSLLSGIDGLSVESLTVDPEGEKSEDNADTKDRGKINFDLQVSASKANTIKEMLVRFEKSIRVIDIDSVVIERGDDRYLATIKGHAYYQPAKEVSLGQKTVPAQKGGR
>NZ_CP047918.1|WP_162371674.1|97110_97344_+|hypothetical-protein
MKKSDIAMIVLIASVSVMLSFAIANQLSFLKPPEKGQQVKTAEPIDSKVDEPDKTVFRSDAINPTVQTVVGGGQAAQ
>NZ_CP047918.1|WP_138059306.1|97356_99117_+|type-II/IV-secretion-system-protein
MALMTDGIQQKLIALLQEEGLVSADAIKQATELSKKEGTPLLTTLTNDGTIDNELLTHGIAQVSGVPYVNLTNTIVDQSILSLLPSDIAERFMAVPLAEVQNRLAVAMIDANNVQAVDYLANRIQRPLKVFMASEAGVRHVLDQYKTDLSSVDVAAKASQEDIKSESSDIKTIVQDSPISRALSTILEYAVKSRASDIHIEPLEKALKIRCRIDGVLREVMQLPKSIEPALVSRIKILSNLKIDEHRVPQDGQFAVKVSAKEVDLRVAVSPVVWGEQVVIRLLDKSGNTFDLEQMGYAGRALRTIRKGIQRPNGMILTSGPTGSGKSTSLYALIKEIKDDTVNIVTLEDPVEYKMDGVNQIQVNAEVGLTFATGLRSILRQDPDVVMVGEMRDAETANLGVQAALTGHLVFSTLHTNSAAGVLPRLLDMEIEPFLIASTVNTIIGQRLVRRVAPRRDTYWSTPLETKSILDTVGHLLPKTKEEVAKVSADLGYKDLPLAGQTAYTLVKGHDTPSTPRGYSGRAGLYEVMDVTEEIQSLIVAHATSAEIQRKAIEQGMITMRQDGYLKALQGITTLEEVNRVTSDTA
>NZ_CP047918.1|WP_162322283.1|99132_100203_+|PilT/PilU-family-type-4a-pilus-ATPase
MEPQQLRIEVLLEEVVKKRASDLHIQVGLPPMLRVDGTLTPVVGFNPLDEQQVETLIFAILDQDQQQILLKDKEFDFSFAFGTLGRFRVNAFHERGNLAAALRLIPNEIKSVTELGMPPVVMTFAEFPRGLVLVTGPTGSGKSTTLAALVDKINTEKSQHIITIEDPIEFTHKSKKSVVVQREVHYDTYSFSAALRSSLRQDPDVVLIGEMRDLETISAAITIAETGHLVFATLHTNSAAQSIDRMIDVFPPHQQPQIRAQLANILMAICSQRLVPAIGGGRVVAAEILIANPAVRNVIREGKSHQLDAIIQTGADQGMQTMDRTLVSLVQSGTITYDNAREFAVDLTEFERLMRG
>NZ_CP047918.1|WP_138059308.1|100207_101416_+|type-II-secretion-system-F-family-protein
MKKFTYEARDKSSNETVKSMVQADSESSAAKVLIEQGLMPLDIREINEDASFFNRLTNRITTKDKVVFLRQMATLIGAGLPLAQSLHTVLEQTANKKMQQVVEEIIAEVEGGHTLSDSFGKHPDVFDKVVLALVAAGETSGTLDEALKRVAAQKEKDAAMMSKIRGAMVYPMIVLLVIVGVMIFMLIAVVPQVDKLYKDMHKTLPMLTQVMISVAGFLISYWWAVIIGLGIGGYFLRQYLKTEPGIKLKDTVKLNIPLFNGMFRKLYMARFTRTGQTLLSTGVAMLDMMRISSESVNNTIISKSIDRAAEKVKGGKALSVALKPEDYILPMVPQMIKIGEQSGKIDEMMGKTAQVYEDELDEEIKAISTAIEPVLMVVLAVFAGGMVGAILFPIYSLVGGIR

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Crispr_ID: NZ_CP047918_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047918_2

170353-170428

Orphan

Consensus_repeat	Method
ACGGAACCGTCAATGGTGATGTCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047918_2

>merge|NZ_CP047918|2|170353-170428|CRISPRCasFinder
ACGGAACCGTCAATGGTGATGTCTACTGTGTGGCTCAAGACGTTTTCATCAACGGAACCGTCAATGGTGATGTTAT

>NZ_CP047918|2|1|170353-170428|CRISPRCasFinder
ACGGAACCGTCAATGGTGATGTCTA	CTGTGTGGCTCAAGACGTTTTCATCA
ACGGAACCGTCAATGGTGATGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047918.1\|WP_162371708.1\|166306_167146_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP047918.1\|WP_162371706.1\|163489_164683_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_CP047918.1\|WP_138059365.1\|165164_165440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371703.1\|160362_160818_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP047918.1\|WP_162371713.1\|177260_178412_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP047918.1\|WP_138059366.1\|165423_166032_+\|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|240605
NZ_CP047918.1\|WP_162371711.1\|172007_172313_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|376395
NZ_CP047918.1\|WP_138059375.1\|174053_174662_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP047918.1\|WP_138059360.1\|160837_161389_+\|nucleoside-monophosphate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP047918.1\|WP_162371714.1\|178404_179226_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|274634
NZ_CP047918.1\|WP_138059370.1\|171379_171550_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP047918.1\|WP_162371712.1\|174757_176425_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP047918.1\|WP_138059373.1\|172402_173167_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP047918.1\|WP_162371709.1\|167229_170106_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP047918.1\|WP_162371705.1\|162176_163412_+\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|223918
NZ_CP047918.1\|WP_138059377.1\|176446_177232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371710.1\|171693_171939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371704.1\|161376_162141_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
NZ_CP047918.1\|WP_138059374.1\|173156_174044_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP047918.1\|WP_162371707.1\|164708_165158_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774

Protein	Function_ID	Function_description	E-value
NZ_CP047918.1\|WP_162371708.1\|166306_167146_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.42005e-83
NZ_CP047918.1\|WP_162371706.1\|163489_164683_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP047918.1\|WP_162371703.1\|160362_160818_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	5.27752e-42
NZ_CP047918.1\|WP_162371713.1\|177260_178412_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.0641e-91
NZ_CP047918.1\|WP_138059366.1\|165423_166032_+\|vitamin-K-epoxide-reductase-family-protein	gnl\|CDD\|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	1.31616e-38
NZ_CP047918.1\|WP_162371711.1\|172007_172313_+\|50S-ribosomal-protein-L21	gnl\|CDD\|376395	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.	3.58266e-25
NZ_CP047918.1\|WP_138059375.1\|174053_174662_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.44234e-29
NZ_CP047918.1\|WP_138059360.1\|160837_161389_+\|nucleoside-monophosphate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.16515e-37
NZ_CP047918.1\|WP_138059370.1\|171379_171550_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	3.23473e-19
NZ_CP047918.1\|WP_162371712.1\|174757_176425_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.36297e-29
NZ_CP047918.1\|WP_138059373.1\|172402_173167_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.66164e-82
NZ_CP047918.1\|WP_162371709.1\|167229_170106_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP047918.1\|WP_162371705.1\|162176_163412_+\|cell-division-protein-FtsA	gnl\|CDD\|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	4.8126e-105
NZ_CP047918.1\|WP_162371714.1\|178404_179226_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|274634	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. [Protein fate, Protein modification and repair].	1.41083e-76
NZ_CP047918.1\|WP_162371704.1\|161376_162141_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	7.18417e-93
NZ_CP047918.1\|WP_138059374.1\|173156_174044_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.91176e-65
NZ_CP047918.1\|WP_162371707.1\|164708_165158_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	2.85333e-53

>NZ_CP047918.1|WP_162371709.1|167229_170106_+|isoleucine--tRNA-ligase
MKFQANSRRRALEYEKDWAKRWSKDKTFEKSVKQRPADRQWVFYDGPPFLTGTPHHGHLLVSTVKDAMGRFHTMRGQRVERRWGWDCHGLPAEVFVEKQLGIANKKEIGTKISIEDYVRECRTAMVKTGTEWEDTIDRLGRWVEFKGAYKTMDKEFMESVWWAFKTLYEKGKIYEGEKILVYCTKDATPISKSEVAMENSYQMDTDPSVFVYFKLEDCDEYMLAWTTTPWTLPANTSVAINPEAEYSLIEYGDKKFYVASKALSRVMQDAKHQPLDYTVIKRIKGGELIGRRYEPLFINRGPEAHRVLRAEFVTTDDGTGIVHQAPAYGEDDYELCKANGVPVESIVDGNGNYTEGPWLGRNIWEVNKEIAKSLVEEGRALKIEYIRHEYPHCHRCGTKLMYRAHPSWFMDIQSQKDEMLKANEETRWTPDNLRTGRFKNIIEQAPDWNLSRDRYWATPIPVWKGVRNDGTELVKVIGSYKEFAELTGRELDDYHLPEVINVTFELDGVTMRHIGKVLDCWFESGSMPFAQFHYPFENKEKFEKSFPADFIIEAIDQTRGWFYSLMAVNVGLFGRAPWKNLICTGFINAADGKKMSKKLKNYTDPMELMDQYSADSFRMLMLSSPLTNGENFALVDKDVGNIARKLSMIWNMYDFFTMYAEVDGWEFDSKRPFTLYPDDLSNPLDKWIVSRVHELAGEIDRHMEAYDLQGATRPIVPFLDDASNWYVRRSRRRFWKSEDDNDKSDAYRTLHYVLLKLSVILAPFVPFLAEELYQKLGGGEESVHLLSWPTNYAVDESEIERMRIAREIINEGLSQRASVGIKVRQPIPSLTYTYKKLDSYYEQIIAEEVNVKQVAHRCSDDCEVQLDVTLTPELKREGLAREVVRFVQNARKSAGLNVDDRIELSLTTDDDELTQAIDEHAGAIRQETLAIILDSIKDGYEVVALVEGKSLNITLKKA
>NZ_CP047918.1|WP_162371708.1|166306_167146_+|glutamate-racemase
MANDRDCTDSLRLAARGVGGSPDLTIGVLDSGIGGLNVLRELVRILPNERYVYYADEKNAPYGEKPEGIVKSLVDDAVEFMVDLGVKAVVIACNTATSVAIDELRAKYSVPIIGMEPAIKPALMTDKRVLLMATPVTIRSGRLKKLLNKSGEADRVDLLEAPRLVEFAEASMFDSTEVKQYIRELLQGYDLSAYSSLVLGCSHFSFFKSVFRSIFPENIQIFDGSCGTADNLKAVLLRNSLCGNSGLSVEYCYSGEILCDKAEIKRLDRLCGISTEEGE
>NZ_CP047918.1|WP_138059366.1|165423_166032_+|vitamin-K-epoxide-reductase-family-protein
MPRKTEITDKQRRTIYSILLAGSLLGTLASLVLSHEAIVLAREANAVLSCDLNSVVSCGAVARHASAYIFGIPNSFIGMLAMPVFVTIAVAGISGTIFPRWFLKAAQLGAIFSLLCLGWMFYMSYVVIGALCPWCLVMDVAFLLIVYALIRYNALTDNLCLKGRVEVFIKNIVQKNYDAFIFLSIAVLAISAIILKYGSQLF
>NZ_CP047918.1|WP_138059365.1|165164_165440_+|hypothetical-protein
MRVVVVTKAQTDYARTVETFLEDFSRQTGRVLEVLDPETPEGESFCRAHDILQYPSVVALGNVGGMEVVQHIWSGALLPTINEVNYYASQN
>NZ_CP047918.1|WP_162371707.1|164708_165158_+|transcriptional-repressor-NrdR
MAHNYKIGDSRVLESRESADGITIRRRRETMDGKYRFTTYERIEHPNLAVIKQGGSRELFDREKLAGAIRRSVGKFFKSEIEIEEIINHVEERLYGLGENEIPSAQIGEFVLDELAAKNEVAYVRFASVFHKFKTLDDFVKILEQRRRG
>NZ_CP047918.1|WP_162371706.1|163489_164683_+|cell-division-protein-FtsZ
MPEVKPSEIQTFASIKVVGVGGAGGSAVNRMKDAGLVGVQFIAMNTDAQALHNSKADIKIHLGHNTTNGLGAGADPSVGEAAARESIDEIRDAIEGADMVFVTIGAGGGTGSGAGHVVAEVARDLGILCVGVATKPFSFEGEKRRTNAEWAIAQLGKQVDTLITIPNDRLLQTIDRRTPLLETFKIADDVLRQGVQGISELITEHGLINLDFADVKAIMSNAGSALMGIGRASGDGRAAQAAQQAIESPLIEVSIDGAKGVLFNVTGGYDMSMSEIQEAAEIITSAVSPDANIIFGATLKPELEDELIITVIATGFDSAYFHQQAAEFDKTSDEEKHIDTIDNAVQSIDMDLSHTEAAEHFASETTNDIWNQPTEDEDDDTPAFLRRRKKHNSTDEL
>NZ_CP047918.1|WP_162371705.1|162176_163412_+|cell-division-protein-FtsA
MQEQSRYAVGIDVGTTMIRCVVGHVDPATGTPTIVGVGQAPNTGMRKGTVANLSGPAHAIDQALLEAERMSGHQVDDATVSINGSHITSTKTDGMIAVGMADHEINDEDLGRIEEVATTGKLPANRKILEVVPFSYTLDGQGGIKDPIGMSGTRLEISANVISAMAPYVSNLQKAAEMATVSTNEIIPSATASAKAVLGESQIESGVAVIDIGGSTTGVAVFEEGDLQYVGVVPMGGINITNDLAIGLKTDPEVAEKVKLKYAVAVGHADNESVSIEQDKETLSFMTRDIDEIVEARLEEIFESVNRELKKAGRAGRLPSGVVLVGGTSNIKGIAEFAKKQLGVAARVGKATGFGGVADDIDKPQYATAVGLMLIDAERTAVSKNKQPSKGGGAIKGAGGIFSNFLKRFKS
>NZ_CP047918.1|WP_162371704.1|161376_162141_+|type-I-methionyl-aminopeptidase
MSGLITGEKTPEQMQAMREGGKILAQIFDDIRGYVRSGLTEQDIDKFVDTKIKEYGASATYKTSEVNFPGAICISTNDEIVHGVPSSYVLRKGDVVSFDLVITYKDMKTDSAFTMVVDEQPKGAVKHLLSATERSLYAGIDAIKGPVYTGDIGAAIERVLKDAKLGIVRELVGHGVGLKMHMPPDIPNYGRKGTGVLLKPGDTIAIEPMATLGGEGIIELDDGWTYATRDDSLAAHFEHTVLITESGAEIITKA
>NZ_CP047918.1|WP_138059360.1|160837_161389_+|nucleoside-monophosphate-kinase
MILLFGPTGAGKSMQGQMLAVRQGWKWLSTGEMLRQSTDPEVIETLKSGELVSDELTYHVFESAVQDARDKKYPNIIIDGFPRTKEQAAWLDQYMEEMNEKIDVVVVLEVPEAEIMARLEKRHRMEDTPETIARRMTIYRQKMYPVLGTFAEAGVKIVHLDGTGTAGEVHDRIFDEVTAACQG
>NZ_CP047918.1|WP_162371703.1|160362_160818_+|GatB/YqeY-domain-containing-protein
MTLKERINDEMKAALLGGNRFAGEVLRNLKAAILNEEVATGRRDEGLDDSGVEKVVAREVKKRTESAKIYRDNGRPELAEPEEREIEVLKVYLPTQLTEDELTTLVEQKIAELGVSGSQAIGQVIGAIKAEVGNKADGATLANIVKNTLSK
>NZ_CP047918.1|WP_138059370.1|171379_171550_+|PspC-domain-containing-protein
MKKLYRSRKDRKIAGVCGGIGEYLGIDPTILRVIFLVCWAAVLYFLLCLVIPEEGK
>NZ_CP047918.1|WP_162371710.1|171693_171939_+|hypothetical-protein
MLKLNRSHNFSISFLAHSGRKLAFSPVRSEHDELIQAIEASRGEACWQLTSTPDVRQLDEFWTGVTEDLRKDPSWFSFADD
>NZ_CP047918.1|WP_162371711.1|172007_172313_+|50S-ribosomal-protein-L21
MKAVVKIGGKQYLVAEKETLMVDLLPEGTKELDLDALLVIDGDKTIVGAPLVKGVKVKAKVVDEKVAGKKVRVIRYKSKKRVNTQTGHRQKYSRIQIASIK
>NZ_CP047918.1|WP_138059373.1|172402_173167_+|ParA-family-protein
MTHIIAVTNQKGGVGKTTSSINIAYYLSKFGNRTLLIDFDPQGNATSGLGIDKQGLDFTMAEVILGKKKLAEVIVDTEFKNLRIAPATPTLANTEVELAQAEHRFSRLKYAVQALQTEYDYIIIDCPPSLSLLTVNALIVARYVLLPVQAEFYALEGLGQLLETMKLVRQKLNPTLDLVGVLATMVDNRTSLSGQVLAEIQKHFPGKVFQNTIPRNVRLAEAPSHGLPIGVYDRFSKGARAYKAVAKEVTERVS
>NZ_CP047918.1|WP_138059374.1|173156_174044_+|ParB/RepB/Spo0J-family-partition-protein
MSAKRGGLGRGLESLIPTEVLDESFDPTAEQDEQISDLRHIKLSEIVADPNQPRRTFDEASLEELSASIKEHGILQPIVVVPHEGKYMIVAGERRFRAAMRAGMEKIPALVRTLSNQHRLELSLIENLQRRDLNPLETATAYLKLRDQFNLTLDQIGQRVGGKSVAAISNTLRLLRLPASVRAALADGRLREGQVRPLINLDSDLIEAVLPRIIAEEWSARAVEQYVSSVKKMQSAKKLGEKPPVEHPYANNIARIEKRFSVPVRITTTARGSGQVVLSFKNDDEFQRIAKLLEK
>NZ_CP047918.1|WP_138059375.1|174053_174662_-|signal-peptidase-I
MEASFLTRHPRAKDAISLLIFISLVFIGTIIINTYIFRSFAVSGHSMDHTLADKDRLIVNRIPITQAQLANKTYMPKRGEIIVFKNPRYVPGMADEYIVKRVIALPGERVTVKDGVLTVYNNDHPDGYQPDEEWRKDGVGPQSPVSGDVDTTVPDQTVFVSGDNRIGQHSFDSRSGLGMIPTFDIIGPVVMRIYPFTSIRWF
>NZ_CP047918.1|WP_162371712.1|174757_176425_+|LCP-family-protein
MTKKHAIDGFVPRRSPGVVGEAHNRGEFKLPHPDTSVGLQRRIPVHHSAMPVHVPRPSSEGNGLAPTRSDKHGLTRADIDDSLKQIDNDDQQSSKKSRRSKRGGEKSRRRRIIKRIVLFLILVVLLIGGWIGVKALMASKSVFKGDIFGLIQQKELKKDANGRSNILIFGTSEDDEGGNHPGAALTDSIMVLSISQSKKDAFMVSLPRDLWVSYKEGCSAGYQFKLNELFNCTSAGGSNKDAGAKALMGKAKEVTGLDVQYHIHVNYTVVRQTVDAVGGITVKVESSDPRGILDRNFDWKCNYKCHYVKYANGEVAQMDGEHALAFMRARNAQGGYGLAGGNFDRERNQQKVIVALREKALSAGTLSNPAKVTGLIDALGNNMSTDFDTSEIRTLLSLASDIKSSAITSISLDKDGESVMTTANHNGVSIVRPSKGLFDYSDVTSYIKREINADAATREKAKIAVLNGSGVAGQAQIAADKLSDMGFIVSVVSNAPEGKYGRREVYQRDDKSMSATRAKLASMYGSEPKTGLSKFGVSADIDFVIVIGEADTKAQ
>NZ_CP047918.1|WP_138059377.1|176446_177232_+|hypothetical-protein
MDLLRSHKRRSRLSEAVYILLNIGLAVTLFAIVRVVQTPWLALVLVLLSKWRALAVRPRFWFANLVANMVDIIVGVSAVILLYAADGQIWLQVAMTVLHVVWLLFIKPRSKRAYMAAQAGIAVFLGVTSLSMVSYAWDATFFVLGMWVIGYVAARHVLGSYSEPHTTLYSLVTGFVFAEFGWIGFHWLMAYQPGVGFGSVKMSQLAVFATLFALVAERAYASYHRYGKVRTSEVILPIILTVSIMIAMYVLAVIKGVDALL
>NZ_CP047918.1|WP_162371713.1|177260_178412_+|trypsin-like-peptidase-domain-containing-protein
MNKNHQSVDNRVKQVVWIVVIVGVLILGATVTAGMYLYTRVNNTSISERNRPKHDGNLASTSDEALISRVVDAASPSVVSIMTNVSTRTMFGAAQQQAAGTGVVVSADGYILTNKHVVSGATAVTIVMSDGTIYEKVSLVGVDPLNDIAYLKIDGAKGLKPASLGDSSTVRVGQGVIAIGNALGQYQNTVSSGIISGKGRPVSAGSENGSTSESLSDLLQTDAAINPGNSGGPLLNRSGQVIGINTAVAANAEGIGFAIPINAVKGTLVSVISGKGVQRSYIGLRYVPVTPAIAKRFNLPVKQGAYVVSDGATSAVETGGPADKAGISEKDIITKINGASVGEAGGVSTLIGAYAPGETVTVTYLRGGSERTTKVTLATYRAN
>NZ_CP047918.1|WP_162371714.1|178404_179226_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSKTYPIRIWLRDAAEQLASVGIPSALLDAEIILAHTLRKSRTWLHAHGDETINIRDLEIANARLDLRLDRTPIAYIIGHKEFYSRLFKVTPSVLIPRPESEAIITLLKQCVPQKATRLVDIGTGSGCLGITAKLELPRLSVTLTDISRHALSVARHNASALRADVVTCRSDLLSDIPGVFDVIIANLPYVDRSWDRSPETNVEPAIALFAEQNGLSLISQLITQLRGRLTPGGLLILEADPVQHDTILQLCQKVHLAHIATDGYAIAFKQTN

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Crispr_ID: NZ_CP047918_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047918_3

261888-262789

TypeII

Consensus_repeat	Method
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRISPRCasFinder

13 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP047918_3

>merge|NZ_CP047918|3|261888-262789|CRT,PILER-CR,CRISPRCasFinder
AAAGGTGTGTTTTGTAATATAACATTAGATATTGGACATAATTTGTAGACGGTGTTGACGGTAGCGAAGTTTACGTTTCAGTACCATTCAATATAACACTACTGTAAAACCTTCTTGACCCTACTCATACTCGTAAATACGTTTCAGTACCATTCAATATAACACTACTGTAAAACATTCTTGACCAGACAATCATCTCTGGCGCGGTTTCAGTACCATTCAATATAACACTACTGTAAAACATGTCGGTAAATCTTGATAAGATAGCCAAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACCGCCACCAGAAAATGTCACGGCGACTATGGGTTTCAGTACCATTCAATATAACACTACTGTAAAACCCTTTGTGCGGTGGCTCCAGCAAATTACGGGTTTCAGTACCATTCAATATAACACTACTGTAAAACGCAATTGTGCAAATCGTCTCAAACTCAGCTGTTTCAGTACCATTCAATATAACACTACTGTAAAACTCAACTCGCTTATGTTGTGCGTTGTTTTCAGTTTCAGTACCATTCAATATAACACTACTGTAAAACGTTCGAGCGGTATGTTTCCCATGCAGATATGTTTCAGTACCATTCAATATAACACTACTGTAAAACATGTTGAATAAAGCAACGACAAGACAGAAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACAGCACAAGGCTTGAAGTGGACCGAGCAACGGTTTCAGTACCATTCAATATAACACTACTGTAAAACGTAATGCTGCCAGTGCTTCCTTGCTGGCTGGTTTCAGTACCATTCAATATAACACTACTGTAAAACAGGTTTGCCACATTGTTGTCCTTGTCGTAGGTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|3|2|261888-262789|CRT
AAAGGTGTGTTTTGTAATATAACATTAGATATTGGA	CATAATTTGTAGACGGTGTTGACGGTAGCGAAGTTTAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|3|1|261962-262789|PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|3|2|261962-262789|CRISPRCasFinder
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047918.1\|WP_162371764.1\|244952_245843_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP047918.1\|WP_162371773.1\|260651_261164_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239217
NZ_CP047918.1\|WP_162371767.1\|248187_249234_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|133462
NZ_CP047918.1\|WP_162371770.1\|251677_252628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371782.1\|269911_270157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371779.1\|268253_268754_-\|hypothetical-protein	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP047918.1\|WP_162371776.1\|263852_264377_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP047918.1\|WP_162371765.1\|246053_246404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371772.1\|254060_260591_+\|InlB-B-repeat-containing-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP047918.1\|WP_162371777.1\|264328_264730_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP047918.1\|WP_162371766.1\|246416_248168_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP047918.1\|WP_162371768.1\|249236_250556_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NZ_CP047918.1\|WP_162372259.1\|264733_265375_-\|hypothetical-protein	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374655
NZ_CP047918.1\|WP_162371771.1\|253424_253823_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371778.1\|265236_268248_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP047918.1\|WP_162371775.1\|263529_263850_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP047918.1\|WP_162371769.1\|250482_251640_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP047918.1\|WP_162371774.1\|262843_263533_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|213407
NZ_CP047918.1\|WP_162371780.1\|269035_269365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371781.1\|269440_269884_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|226036

Protein	Function_ID	Function_description	E-value
NZ_CP047918.1\|WP_162371764.1\|244952_245843_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.63975e-118
NZ_CP047918.1\|WP_162371773.1\|260651_261164_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.38416e-19
NZ_CP047918.1\|WP_162371767.1\|248187_249234_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|133462	cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.	4.88237e-82
NZ_CP047918.1\|WP_162371778.1\|265236_268248_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.81484e-143
NZ_CP047918.1\|WP_162371779.1\|268253_268754_-\|hypothetical-protein	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	2.33678e-33
NZ_CP047918.1\|WP_162371776.1\|263852_264377_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.29963e-62
NZ_CP047918.1\|WP_162371772.1\|254060_260591_+\|InlB-B-repeat-containing-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	9.15916e-37
NZ_CP047918.1\|WP_162371777.1\|264328_264730_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.12541e-37
NZ_CP047918.1\|WP_162371766.1\|246416_248168_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	9.91846e-104
NZ_CP047918.1\|WP_162371768.1\|249236_250556_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	3.82717e-78
NZ_CP047918.1\|WP_162372259.1\|264733_265375_-\|hypothetical-protein	gnl\|CDD\|374655	pfam16595, Cas9_PI, PAM-interacting domain of CRISPR-associated endonuclease Cas9. Cas9_PI is a family found at the C-terminal of bacterial type II CRISPR system Cas9 endonuclease. This domain adopts a novel protein fold that is unique to the Cas9 family. It is positioned in the structure-DNA-complex to recognize the PAM sequence on the non-complementary DNA strand of the crRNA. PAM sequence is protospacer-adjacent motifs on DNA. See family CRISPR-DR2, Rfam:RF01315. Cas9 carries two nuclease domains, HNH and RuvC, which cleave the DNA strands that are complementary and non-complementary to the 20 nucleotide guide sequence in crRNAs, respectively.	7.47965e-15
NZ_CP047918.1\|WP_162371775.1\|263529_263850_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.34993e-29
NZ_CP047918.1\|WP_162371769.1\|250482_251640_+\|glycosyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	9.3667e-95
NZ_CP047918.1\|WP_162371774.1\|262843_263533_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.56289e-20
NZ_CP047918.1\|WP_162371781.1\|269440_269884_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	0.00041688

>NZ_CP047918.1|WP_162371773.1|260651_261164_-|NUDIX-domain-containing-protein
MTHSHSNPNIEIPKHLKEIAHISDENFNIPPIHHNERPITRLGSRGIVLNDNGEIAVIHKKAKNEYKLPGGGIDNGEDPREAFRRECREELGYSVIITNELGITIEYKSQENFQQVSFVYEAKVTGQPYRNRLTYKEKAEGAASYDSVYRTKFMVLRDAQILEHYIKTTK
>NZ_CP047918.1|WP_162371772.1|254060_260591_+|InlB-B-repeat-containing-protein
MQKTRRLLLASAIAAVTVGVLVVQYFVASQLAKADAINSTDFVMTIDTRKGTGNTFTVPTIGGGYNYTLVCGNGVVLTGQTGNATCSYATAGVYKVRIAGAFPRIYFDYRGDRFKVISIDQWGTNEWQNMEHAFDGAENLDVKATDKPRMGQVVSLAYMFRDAKSLKGEGADWQWDTKNVESLNSTFSGARQFNQNISSWNTSKVTDMDNTFTNAYEFNQPIQSWDVSKVNTMVAVLAYAKKFNQPIGEWNTTQLTDALLALAGAERFDQSLAHWDVRRLTDADRLLDGVKISTPNYDATLTSWQAQAVRGNVKLGGGNSNYCVAEAKRNDLIATKSWIITDAGKDCTAYTVTAVDYTGVTDVDENTTTGTVLGRLNSTDAVNSPQSDFTYTLDCTGAQNNLVAIDGNTIKLAQSPDYEQNATLEICVRATNKAGKTFDKHLTISVNNLYSVSYNANGADAGAPPASTGETLHSGDSVSVEANINGLAKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQDTQPPVAPAAAPDMTATSDTGDSDSDNITNKNKPVFKLVCTEVGSTLTLYVDGAANGTVNCANVGPVDMVPTAPLTEGNHSVTFKESDAAGNESPSSPALAVTIDTTAPAAPTVTMDPVTADNTINSVEAAAQQFIRGSVTGAHPGDKARLTINGVIYEATIDATGRFSVTVPGTELVSDPDRTIDVVVTASDVAGNTTSINSSKTYNVDANVVVPPARATLKASSDTGSSDSDNITKNTRPVVTLQCISATDKLHLIVDGVEVQVVNCTSAGPIEVTLPNALSDGSHTVTYSRETSAGNVSAPSMPLTLTIDTTAPTGALTTQQATVASPALSGTVNDPTATVVVTINGVDYPAVVAGGIWTLPSNSIAALGDGAYTVKMKFTDIAGNVSVTQGVLTISLPSSPLTPQLPQPGGVGVATPEQNKKKSHSSLAGTGDNLYLIIGVVCLTIAAGSIGLYRLRRRVR
>NZ_CP047918.1|WP_162371771.1|253424_253823_-|hypothetical-protein
MHTASLTIKRVGEYPHLLQKDEKMTAYDNPLAEALASLDGCTITVEKKDDNALLLHIARSSRSRRKQGGSADLTIRLNPGNIKDCQFVAHGHRAYNMALLLIDELLAHTPPGRCNISLEAVEEHRRKRRSRR
>NZ_CP047918.1|WP_162371770.1|251677_252628_+|hypothetical-protein
MKLLRKKQQVPARRSGLVVREGRANADSLDERYAFRRNRTLTGSLSSNVSSASESFNELRSARVQAHDLRRHRRKLFGVWLGVSVATLLLGYLLYESIALPNVRFQEAVVVQPEDKSLYEKKIQEYLNAHFFERSRLTLNVKNLAIYLQTHGAPEVEEVSSSLSFGGLGVSTISLKVRKPVVSWKTGDVRLYVDQKGIGFEKNYYDAPTVSVLDQTGVQTRNNRILASNRFLSFMGRLIGRLAEQGYRATQVVLPEGTTRQLLMSVDGVSYPIKFSVDRPAAAQAEDAARSIRYLLASGISPTYLDVRVSGKAYYK
>NZ_CP047918.1|WP_162371769.1|250482_251640_+|glycosyltransferase
MKVLAAGGGSGGHVTPVVAVLREIKDQYPDTEIRFWCDRKFESQARRVMKHFDDSIRVDVVVSGKLRRYHHLTFIQQLIKLRTIVLPNLIDGIKVAVGAIQSFAKLIVWRPDVVFTKGGFVCLPIGFAAHMLRIPLVIHDSDAHPGLTNRILARWAFRIGTGAPLKFYSYPSSLSRYVGVPVRAEFTPYSEGDRQKVKRSLGFDSNRPLVVITGGGLGARRINMAVATMLNELMERANIVLISGEGQYDEMRALTPQNDERYQLHAFVGQGMADMLGAADVVVARAGATTILELAALAKPTILVPNGYLTGGHQLKNAAVYAEKGAVSVIDENQLEKHPDILLDEVINILSDDTRRKQMSRLFYEFAKPNAARDMATLIVSAVKK
>NZ_CP047918.1|WP_162371768.1|249236_250556_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MSVARRRDGHSTFLQGSTDVANQRRHRPDYRIVLFMGILMLLGLVVMYAIGPERANLLNRIYNTNTYTENFFVIKQVVSLAIALLAFIFMSTVPFTKLRKYGFQLVCVGLALSFLLFLLGNVAHIVPSTLGAYRWFQVGSLSFQPAEVLKLSLLIYTAAFLGKRYSEGKIDDKSATLYPILGLSGLALFIVVVIQKDMGTGLAIFSMLATMFIVSTMNWKILLKIAVVCVVLGIIALVTSPHRMERLTTFIGGDSASMTAANESDNNYHIKNAKIALGTGGLFGRGIGKSIQATGYLPEAINDSIFAIMGEIFGFIGTTIIIGLFSALLLRLLKISDRLPDMSMRLAVAGVFGWLVAHVAMNIASMIGITPLTGITLPLLSFGGTSMIFMCAALGLAFQLSRYTSHRPVQLKEATHESTSSRWGVGGSRYARRRRSTGN
>NZ_CP047918.1|WP_162371767.1|248187_249234_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MELPPHAAIHHLTTDLNATFILSIGAFLLSMVLTPVYTYFAYRYKFWKKQRSTSTLGEKLQIFTKLHQNKFTRNIPTMAGIIGVIAISVVTLGFNWDRAQTQLPLAALIGGAAVGLLDDIINIRGQGKGVAGLRSSLKFVMIILMSLVLGWFFYAKLGYTSIHVPFVGDWQVGVWIIAIFVLVVVSTGNAVNISDGLDGLAGGLLAVSFSVFGMIALLQGHLKIAGFCFTVVGALLSYLWFNIYPARFFMGDVGSFAFGTSLGVVAMLTNTLFLLPIIGMIFVIEAGSSLIQITAKRFFGRKIFISAPIHHHLEAKGWPETKVTMRFWVIACVAGFIGLLLALTGGHI
>NZ_CP047918.1|WP_162371766.1|246416_248168_+|penicillin-binding-protein-2
MKLHFFRLSRAQYIAIITVLLMALFVVRLFHIQVIQHALYVEQADSEHIKQFTLHAKRGEIYTMDSGVPHKLVMNETVYTVWADPTMIVDKQAVVTAINKIAGGNARNDFAKYLDVKKSRYQVLATKVSRKQAQMLKKENLPGIGFDAVSQRVYPEGQLASQVLGFVDAEGKGKYGFEQANDATLRGVDGMLKTVTDVRSVPLTVSDKNIKKPAVDGKNMVLTIDRNVQARVEQALADGLARSGAKKASAIVMDPQTGKILAMANLPTYDPGKLNEIKDEDQVSNDVITHPYEVGSDVKTFTMAMGIDKGVITPGTTYNNTDSIRVEDITIKNASLGHTGDITMQKALNLSLNTGVVTVAQLLGDGSRITRGARNTIYDYFYNRFRLGQVTGVELANESAGVVISPDHVQGNAVRYSNMVFGQGMDVTMLQVASGFSAIVNGGIYHMPTVIAGSIDQDGQFKEAPLKRQFPGVISASSSATIREMVHQAHYATYNPKGDGSERYLVGGKTGTSQTIINGKYVDNQTVGTYLGYGGEKGATPSYVAMVEISAPGKNMGGGADAKPIFNEISNWMLGYLRLTPKE
>NZ_CP047918.1|WP_162371765.1|246053_246404_+|hypothetical-protein
MSYARTTQFNSRRQTNWSRNQNTVAFASAVKLGPITHTVLVALMLTILGLIYLTQATRVSGYDYAANEVSNKISNLTEQKNDLEVENARLTALQSVKNSSVAKNMATPTDTRSVSE
>NZ_CP047918.1|WP_162371764.1|244952_245843_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MSIKEHPPLHVPVLLNDVLVMLDPKSGENYLDLTAGYGGHARAIFAQTANYTESTLVDRDEMAQSHLTEFSKKGTQLLHADFASAAKQLVEEGRSYNLILLDLGVSSPQLDRAERGFSFTHDGPLDMRMDKRQAYTAETFVNTAKRSDIVRCIREYGEEPLSVAKRYADAIITSRPIVSTGQLADIIRQSHVGKWQKTHPATRTFQAIRIQVNDELRQVEEVMPLLPKLLKKGGRVGVISFHSLEDRIVKRYFAEQAKSGYEAELDIVTKHPISGATQDVHNPRSRSAKLRVAVKK
>NZ_CP047918.1|WP_162371774.1|262843_263533_-|type-II-A-CRISPR-associated-protein-Csn2
MNISISGFDNTLSIPDDGGIATLIVHNNLFFRRVVEDMLDIYTKREDNNRTVIYNSDHNPLNFAKDTLVITDIYSYDLANRTITAALYKNIQDNSDIDIAKLAQIEADILDVLSAINTNFSQSINYQTDISINDIMKMAHVGLEANEKNNYLDKLYGIIDSAQQLLSKRLVILINQRQLLSHCELQALLQYVQNNHFSVLFIEKNCKDKLNEENILVIDDDLYDFSTNS
>NZ_CP047918.1|WP_162371775.1|263529_263850_-|CRISPR-associated-endonuclease-Cas2
MKLRYMRMILFFDLPMVSARERKIYATFRKQLTQEGFVMMQQSVYSKLVLNSTNEKSTYDRLKKIIPDNGVIQLLTITERQFASMEYLAGEYEELSIQSTDRTVVL
>NZ_CP047918.1|WP_162371776.1|263852_264377_-|type-II-CRISPR-associated-endonuclease-Cas1
MVYRETSNQTSCETLMNFAASVLSGDTTNREAHAAKFYFKELFGPQFSRDSSSDINAALNYGYSILLSAFNREITSAGYSTTMGVNHCNEYNPFNLTCDLMEPFRPIVDREVYKCRSFAFDDFFKSRLIDILNHKVIILGKEQFLSNAINIYVKLFFRAMEEGSNKDLPEYELI
>NZ_CP047918.1|WP_162371777.1|264328_264730_-|CRISPR-associated-endonuclease-Cas1
MSWRTVIVKNRCKLSYKNDYMLIISDGKEKALHISEIGTLIIENTAVNITAYLLCELARYKVKIIFCDHQRNPYSEIIPYYGAHNASKQMHRQIQWPQTAKDKIWQRIVAQKSSSKLRWSIEKPPTKPPAKRL
>NZ_CP047918.1|WP_162372259.1|264733_265375_-|hypothetical-protein
MNEYIRNNYKQAKVLISKIPINQKIEHEGNEQFIVGSSEVTNAKQLKLPYNIEYAVAVALKQGIPRITITEEQATSDDELQNKRNKQIERRDKVIDGVEKFWGIYAEKLANQYQQFGNAGPNAQSALAEYSELSLDDRIKVIGLVLRATHAGSDRVDMKGSENKPVFPELGLPNSFGRMAGKSLDPTKLTFVYESITGLHRRKLDGKSLGRDL
>NZ_CP047918.1|WP_162371778.1|265236_268248_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MISSFDSQNLQTFMDFISADESVAKKVKAILLDRSLSRSTRKSAIIELLQPSPDNKKTISEAVGAVIGLKWNANKLFEDDSLEAKGEFSNKNYEEQRDEIATAIGDDRYGLVETLESVYQWTIFSQFIRKDSCLSDIMVEKYDDYRQDLSDLKSLFHEFLPKESYKSFFHGDAAEFELYNNHKRNLDDLYKSIKKQLGEVAKDDPHYQRFEKRAELEEFLSRQRIRDNGAIPHQIHQYELERIIDNQAQYYPLLAQNRDKIISIFTFKLPYYIGPLKTGGNFAWSVKKKDGVIYPWNFDEIIDDEASAERFIDRMHNNCTYLPDEEVLPKNSLLYQEYEVRNELKNVTVNGERLSPDIQNRIVDELFTKELSVTYKKLIKYLYDNQIYNTDSLIISGTAKEKSFASSRKSYIDFTQKVGVAITLKNQQAIEEVIKWIALFEDKKILAKKLQKHSGIFNENQLRTILKLNYSGWGRLSRKLLDGITAHTPYGELTVIETMRRCSDNFMQIIQSDQYEFKKIIDDILSVNQRADITYDDIKNLAGSPGIKRALWRSVRIIDEIVDTIGYEPKLISIEMARNEDEKVRTKSRYGQLEKMYKDLYGKIYTKSDIKSQLAEYKDKLDKKKYYLYFLQNGKCAYTGNPLDIENDLRDSEIDHILPRSLTKDDSLDNTVLVLRKENQRKLDDYPIAPDIQNHMRPIWTSLKNAKLMSQLKFQRLTSQKQLSEDRVAGFVNRQLVETRQITKHLARILTEKYHDSATEVFTIRAGMSSEYRRIHDLPKCREVNDLHHAKDAYLAAVLAQYIKIRYPKLDKAFVYGEYMKFKSKKQTNMDRSSFILASMSYDLANTETGEIIWQSKITHDIIDRTMKYNDCLITKKTEIGDNQFYDQTIYGKNSGATMITRKANLPVDKYGGYSGRKAAYFMAIRYLKQVRNKDVFVNEIISVPTQIYTLEKLNRVQSTNISATTINKQKFLFLKYQSIKKLSMKATNSLLSAAAKLPMPNS
>NZ_CP047918.1|WP_162371779.1|268253_268754_-|hypothetical-protein
MKQPYSIGLDIGTNSVGWAVINEDFRLHRYKHQNMWGAHLFDEAQKAATRRSFRSSRRRLARRKRRITLLQRIFDNEMQKVDPHFYLRLSESMLHVGDKSSTLELDANILFADRSFTDKSYREKYPTIYHLRSDLFHNSKKQDIRLVYLALHHIIKYRGNFWSRAE
>NZ_CP047918.1|WP_162371780.1|269035_269365_-|hypothetical-protein
MLAQGKTWPISNITPDEVNVALKEARDQKKQPSTEPKTSDQPDAPINNSNSVTEKPKKKRTRTRKRKPSGSSDTQQEPNRPRIIRESSVNDSKPSSSKPENDPTILSVR
>NZ_CP047918.1|WP_162371781.1|269440_269884_-|TraM-recognition-domain-containing-protein
MDEFQNFATDSFATILSEARKYGLNLTVANQYISQMQDSVRDAVFGNVGTMISFRVSADDSPILAKQFEPQFEPNDLLQMHNRNFIINMVINGEKAPAFSAKTSTYHPPKTITLVGLSNIREKTTPATVKRSRRIFQNASYLQKSRC
>NZ_CP047918.1|WP_162371782.1|269911_270157_+|hypothetical-protein
MSGISERLMAASWILVTRNDPRIPALSSPIRPLLRLTTRILPSSIIWRILNVDFGWPMMLRITGLAVKAPTLFSTGAIASA

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Crispr_ID: NZ_CP047918_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047918_4

290684-291511

TypeII

Consensus_repeat	Method
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRISPRCasFinder
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRT

12 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP047918_4

>merge|NZ_CP047918|4|290684-291511|PILER-CR,CRISPRCasFinder,CRT
GTTTCAGTACCATTCAATATAACACTACTGTAAAACCTTCTTGACCCTACTCATACTCGTAAATACGTTTCAGTACCATTCAATATAACACTACTGTAAAACATTCTTGACCAGACAATCATCTCTGGCGCGGTTTCAGTACCATTCAATATAACACTACTGTAAAACATGTCGGTAAATCTTGATAAGATAGCCAAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACCGCCACCAGAAAATGTCACGGCGACTATGGGTTTCAGTACCATTCAATATAACACTACTGTAAAACCCTTTGTGCGGTGGCTCCAGCAAATTACGGGTTTCAGTACCATTCAATATAACACTACTGTAAAACGCAATTGTGCAAATCGTCTCAAACTCAGCTGTTTCAGTACCATTCAATATAACACTACTGTAAAACTCAACTCGCTTATGTTGTGCGTTGTTTTCAGTTTCAGTACCATTCAATATAACACTACTGTAAAACGTTCGAGCGGTATGTTTCCCATGCAGATATGTTTCAGTACCATTCAATATAACACTACTGTAAAACATGTTGAATAAAGCAACGACAAGACAGAAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACAGCACAAGGCTTGAAGTGGACCGAGCAACGGTTTCAGTACCATTCAATATAACACTACTGTAAAACGTAATGCTGCCAGTGCTTCCTTGCTGGCTGGTTTCAGTACCATTCAATATAACACTACTGTAAAACAGGTTTGCCACATTGTTGTCCTTGTCGTAGGTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|4|2|290684-291511|PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|4|3|290684-291511|CRISPRCasFinder
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP047918|4|3|290684-291511|CRT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CTTCTTGACCCTACTCATACTCGTAAATAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATTCTTGACCAGACAATCATCTCTGGCGCG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTCGGTAAATCTTGATAAGATAGCCAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGCCACCAGAAAATGTCACGGCGACTATGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTTTGTGCGGTGGCTCCAGCAAATTACGG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GCAATTGTGCAAATCGTCTCAAACTCAGCT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCAACTCGCTTATGTTGTGCGTTGTTTTCA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTTCGAGCGGTATGTTTCCCATGCAGATAT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ATGTTGAATAAAGCAACGACAAGACAGAAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGCACAAGGCTTGAAGTGGACCGAGCAACG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GTAATGCTGCCAGTGCTTCCTTGCTGGCTG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AGGTTTGCCACATTGTTGTCCTTGTCGTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047918.1\|WP_162371814.1\|289057_289309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162372265.1\|286164_286398_+\|InlB-B-repeat-containing-protein	unknown	unknown	gnl\|CDD\|378188
NZ_CP047918.1\|WP_162371822.1\|306253_306682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371818.1\|300708_301767_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223642
NZ_CP047918.1\|WP_162371810.1\|285741_285894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371816.1\|293456_297479_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP047918.1\|WP_162371821.1\|305353_305998_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371807.1\|284147_284501_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP047918.1\|WP_162371819.1\|302205_304548_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_CP047918.1\|WP_162371809.1\|285445_285724_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371813.1\|287600_288986_+\|Ig-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380150
NZ_CP047918.1\|WP_162371808.1\|284478_284898_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP047918.1\|WP_162371811.1\|286782_287016_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371815.1\|292574_293453_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP047918.1\|WP_162371820.1\|304655_305024_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047918.1\|WP_162371775.1\|292251_292572_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP047918.1\|WP_162371817.1\|297760_300583_-\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP047918.1\|WP_162371773.1\|289374_289887_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239217
NZ_CP047918.1\|WP_162371812.1\|286969_287257_+\|InlB-B-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380193
NZ_CP047918.1\|WP_162371774.1\|291565_292255_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|213407

Protein	Function_ID	Function_description	E-value
NZ_CP047918.1\|WP_162371819.1\|302205_304548_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP047918.1\|WP_162372265.1\|286164_286398_+\|InlB-B-repeat-containing-protein	gnl\|CDD\|378188	pfam09479, Flg_new, Listeria-Bacteroides repeat domain (List_Bact_rpt). This model describes a conserved core region of about 43 residues, which occurs in at least two families of tandem repeats. These include 78-residue repeats which occur from 2 to 15 times in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats found in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few other bacteria.	2.61235e-06
NZ_CP047918.1\|WP_162371807.1\|284147_284501_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.73848e-23
NZ_CP047918.1\|WP_162371816.1\|293456_297479_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.38518e-143
NZ_CP047918.1\|WP_162371818.1\|300708_301767_-\|hypothetical-protein	gnl\|CDD\|223642	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].	3.15362e-10
NZ_CP047918.1\|WP_162371813.1\|287600_288986_+\|Ig-like-domain-containing-protein	gnl\|CDD\|380150	NF012196, Ig_like_ice, Ig-like domain-containing protein. This variant form of the Ig-like domain occurs as a repeat in a number of large adhesins, including a 1.5-MDa ice-binding adhesin, the Marinomonas primoryensis antifreeze protein.	1.38409e-14
NZ_CP047918.1\|WP_162371808.1\|284478_284898_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	4.75819e-09
NZ_CP047918.1\|WP_162371774.1\|291565_292255_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.56289e-20
NZ_CP047918.1\|WP_162371775.1\|292251_292572_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.34993e-29
NZ_CP047918.1\|WP_162371817.1\|297760_300583_-\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	3.16384e-07
NZ_CP047918.1\|WP_162371773.1\|289374_289887_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.38416e-19
NZ_CP047918.1\|WP_162371812.1\|286969_287257_+\|InlB-B-repeat-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	3.6048e-06
NZ_CP047918.1\|WP_162371815.1\|292574_293453_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.09315e-107

>NZ_CP047918.1|WP_162371773.1|289374_289887_-|NUDIX-domain-containing-protein
MTHSHSNPNIEIPKHLKEIAHISDENFNIPPIHHNERPITRLGSRGIVLNDNGEIAVIHKKAKNEYKLPGGGIDNGEDPREAFRRECREELGYSVIITNELGITIEYKSQENFQQVSFVYEAKVTGQPYRNRLTYKEKAEGAASYDSVYRTKFMVLRDAQILEHYIKTTK
>NZ_CP047918.1|WP_162371814.1|289057_289309_+|hypothetical-protein
MKFTDIAGNVSVTQGVLTISLPSSPLTPQLPQPGGVGVATPEQNKKKSHSSLAGTGDNLYLIIGVCASRLRPALSVYIVCDDA
>NZ_CP047918.1|WP_162371813.1|287600_288986_+|Ig-like-domain-containing-protein
MVQGAGLVNAWNFATDTMPASDTTLYAKWTINQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQDTQPPVAPAAAPDMTATSDTGDSDSDNITNKNKPVFKLVCTEVGSTLTLYVDGAANGTVNCANVGPVDMVPTAPLTEGNHSVTFKESDAAGNESPSSPALAVTIDTTAPAAPTVTMDPVTADNTINSVEAAAQQFIRGSVTGAHPGDKARLTINGVIYEATIDATGRFSVTVPGTELVSDPDRTIDVVVTASDVAGNTTSINSSKTYNVDANVVVPPARATLKASSDTGSSDSDNITKNTRPVVTLQCISATDKLHLIVDGVEVQVVNCTSAGPIEVTLPNALSDGSHTVTYSRETSAGNVSAPSMPLTLTIDTTAPTGALTTQQATVASPALSGTVNDPTATVVVTINGVDYPA
>NZ_CP047918.1|WP_162371812.1|286969_287257_+|InlB-B-repeat-containing-protein
MQVHHTPSANFHLTGDITLYAQWQVNNYTSTSTARVALTYQTNCCLWCKSHHPTAPTKTGHTFAGWYKEAGLVNAGTSPPTLCQRATHPLRQVDN
>NZ_CP047918.1|WP_162371811.1|286782_287016_+|hypothetical-protein
MPASDTTLYAKWTINQYKIHYDQPGTGGATPDTVSNYDTTVQIANNGFTKPATASPLEHCPNGAGTPYAQRQLPPHW
>NZ_CP047918.1|WP_162372265.1|286164_286398_+|InlB-B-repeat-containing-protein
MTLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTLHQNWPHLCRLVQGGWSSYAWNFATDTMPASDTTLYAK
>NZ_CP047918.1|WP_162371810.1|285741_285894_+|hypothetical-protein
MASKQLHPPLRQQGCSNVPDQTVAFGAKATTPTAPTKTATPLPVGTRRLV
>NZ_CP047918.1|WP_162371809.1|285445_285724_+|hypothetical-protein
MYKRLSSYAWNFATELCQRATPLYASGQLTSTRYITMPHCTGGATPDTVSNYDTTVQIANNGFTKPATASPAGTLPLTVQVHIRPGANFHSL
>NZ_CP047918.1|WP_162371808.1|284478_284898_+|BspA-family-leucine-rich-repeat-surface-protein
MAYAKKFNQPIGEWNTTQLTDALLALAGAERFDQSLAHWDVRRLTDADRLLDGVKISTPNYDATLTSWQAQAVRGNVKLGGGNSNYCVAEAKRNDLIATKSWIITDAGKDCTAYTVTAVDYTGVTDVDENTTLAQYWVG
>NZ_CP047918.1|WP_162371807.1|284147_284501_+|BspA-family-leucine-rich-repeat-surface-protein
MNGKIWSTRLMGGKPRCKGYRQATHGPGCQPGLYVSRRQKSKGEGADWQWDTKNVESLNSTFSGARQFNQNISSWNTSKVTDMDNTFTNAYEFNQPIQSWDVSKSILWCGVGICKKV
>NZ_CP047918.1|WP_162371774.1|291565_292255_-|type-II-A-CRISPR-associated-protein-Csn2
MNISISGFDNTLSIPDDGGIATLIVHNNLFFRRVVEDMLDIYTKREDNNRTVIYNSDHNPLNFAKDTLVITDIYSYDLANRTITAALYKNIQDNSDIDIAKLAQIEADILDVLSAINTNFSQSINYQTDISINDIMKMAHVGLEANEKNNYLDKLYGIIDSAQQLLSKRLVILINQRQLLSHCELQALLQYVQNNHFSVLFIEKNCKDKLNEENILVIDDDLYDFSTNS
>NZ_CP047918.1|WP_162371775.1|292251_292572_-|CRISPR-associated-endonuclease-Cas2
MKLRYMRMILFFDLPMVSARERKIYATFRKQLTQEGFVMMQQSVYSKLVLNSTNEKSTYDRLKKIIPDNGVIQLLTITERQFASMEYLAGEYEELSIQSTDRTVVL
>NZ_CP047918.1|WP_162371815.1|292574_293453_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVIVKNRCKLSYKNDYMLIISDGKEKALHISEIGTLIIENTAVNITAYLLCELARYKVKIIFCDHQRNPYSEIIPYYGAHNASKQMHRQIQWPQTAKDKIWQRIVAQKIIKQAQVVYRETSNQTSCETLMNFAASVLSGDTTNREAHAAKFYFKELFGPQFSRDSSSDINAALNYGYSILLSAFNREITSAGYSTTMGVNHCNEYNPFNLTCDLMEPFRPIVDREVYKCRSFAFDDFFKSRLIDILNHKVIILGKEQFLSNAINIYVKLFFRAMEEGSNKDLPEYELI
>NZ_CP047918.1|WP_162371816.1|293456_297479_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKQPYSIGLDIGTNSVGWAVINEDFRLHRYKHQNMWGAHLFDEAQKAATRRSFRSSRRRLARRKRRITLLQRIFDNEMQKVDPHFYLRLSESMLHVGDKSSTLELDANILFADRSFTDKSYREKYPTIYHLRSDLFHNSKKQDIRLVYLALHHIIKYRGNFLVEGRVDNVISSFDSQNLQTFMDFISADESVAKKVKAILLDRSLSRSTRKSAIIELLQPSPDNKKTISEAVGAVIGLKWNANKLFEDDSLEAKGEFSNKNYEEQRDEIATAIGDDRYGLVETLESVYQWTIFSQFIRKDSCLSDIMVEKYDDYRQDLSDLKSLFHEFLPKESYKSFFHGDAAEFELYNNHKRNLDDLYKSIKKQLGEVAKDDPHYQRFEKRAELEEFLSRQRIRDNGAIPHQIHQYELERIIDNQAQYYPLLAQNRDKIISIFTFKLPYYIGPLKTGGNFAWSVKKKDGVIYPWNFDEIIDDEASAERFIDRMHNNCTYLPDEEVLPKNSLLYQEYEVRNELKNVTVNGERLSPDIQNRIVDELFTKELSVTYKKLIKYLYDNQIYNTDSLIISGTAKEKSFASSRKSYIDFTQKVGVAITLKNQQAIEEVIKWIALFEDKKILAKKLQKHSGIFNENQLRTILKLNYSGWGRLSRKLLDGITAHTPYGELTVIETMRRCSDNFMQIIQSDQYEFKKIIDDILSVNQRADITYDDIKNLAGSPGIKRALWRSVRIIDEIVDTIGYEPKLISIEMARNEDEKVRTKSRYGQLEKMYKDLYGKIYTKSDIKSQLAEYKDKLDKKKYYLYFLQNGKCAYTGNPLDIENDLRDSEIDHILPRSLTKDDSLDNTVLVLRKENQRKLDDYPIAPDIQNHMRPIWTSLKNAKLMSQLKFQRLTSQKQLSEDRVAGFVNRQLVETRQITKHLARILTEKYHDSATEVFTIRAGMSSEYRRIHDLPKCREVNDLHHAKDAYLAAVLAQYIKIRYPKLDKAFVYGEYMKFKSKKQTNMDRSSFILASMSYDLANTETGEIIWQSKITHDIIDRTMKYNDCLITKKTEIGDNQFYDQTIYGKNSGATMITRKANLPVDKYGGYSGRKAAYFMAIRYLKQVRNKDVFVNEIISVPTQIYTLEKTKPGSINEYIRNNYKQAKVLISKIPINQKIEHEGNEQFIVGSSEVTNAKQLKLPYNIEYAVAVALKQGIPRITITEEQATSDDELQNKRNKQIERRDKVIDGVEKFWGIYAEKLANQYQQFGNAGPNAQSALAEYSELSLDDRIKVIGLVLRATHAGSDRVDMKGSENKPVFPELGLPNSFGRMAGKSLDPTKLTFVYESITGLHRRKLDGKSLGRDL
>NZ_CP047918.1|WP_162371817.1|297760_300583_-|type-IV-secretion-system-DNA-binding-domain-containing-protein
MSIIVDFINIILQWYVWLPIVATLGYMTWRNYQRVDVVRNVDSVLLMLEIPKTNDKSELAAEQMFASLHGILRDAKELKANGGYQEHLSFEIASVGGRIQFYVWTPKSLQNFVEGQIYAQYPQVQIHATDEDYVAHERHHSVVYTSEIVLTDKEFLPIKTFQSFEVDPLAGITGTLAKLEDTEEEIWIQMLIRPVRDDWHKASDAWIKAVKSGGFNLFGDGGMKWVTGLFELLWAPPEQGTGSAAEISERDKTRIAEAEKKATKLGYQVKIRLAYLGENTSDAKLRMQGIVGTFKQFNSTNLNGFKQSHDSFAKESLAKYKTRLFADRGYLMNIEEVASVFHLPHTNVETPNIVWASTKTAEPPAKLPILTGDPAHDENISAFGMTNFRGINHQFGMLRYDRSRHVYIIGQTGAGKSGLLELFALSDIFHGQGYAIIDPHGDFAINNMRFVPGSRLKDVVYFNPADTQYPLGFNPLEVTNPSQKTNISSEVIGVLKRMFGDSWGPRLEYILRYTILALLDRPETTMLDITRMLTDKKFRKETLSYCTDTVVLQFWNVEFASWTDKFQAEAIAPVLNKVGAFTANPVIRNIIGQPKSTFNIRQIMDEGKILVVNLSKGLIGEDNAGILGSFLVTKIQLAAMSRSDIPDIKDRRPFYLYVDEFQNFATDSFATILSEARKYGLNLTVANQYISQMQDSVRDAVFGNVGTMISFRVSADDSPILAKQFEPQFEPNDLLQMHNRNFIINMVINGEKAPAFSAKTLNLPPAQDDNTGRIIQHTRENYARNRQEIEEDISKRILPPENLVVKRPGPAYTPPKSPEQREAERRAKEAAMLAQGKTWPISNITPDEVNVALKEARDQKKQPSTEPKTSDQPDAPINNSNSVTEKPKKKRTRTRKRKPSGSSDTQQEPNRPRIIRESSVNDSKPSSSKPENDPTILSVR
>NZ_CP047918.1|WP_162371818.1|300708_301767_-|hypothetical-protein
MSDTAKSDTAATLKSAVQEILKAIDQEREREIITRRFGLFERRETLEQIGELLSITRERVRQLEKAILIRLKIAADEGKIPAVHEIERLIVRDLSENGRVGRVQDVATRMVGNMPTIETKARIAFVGELSPKLVVINENDNYYQGVGIAENGDEKKIRGSVDEIVKTIKKHGEPVDIETLHGMLNYESPSQVRALASLSKGLASLKDVWGLVKWPTVNPKNIRDKIYVILADNGKPMHFSEIAKFIKDSDFKRKDVTTQAIHNELIKDKRFVLIGRGIYALDSWGYSKGTVSDIITKVLKKAGEPLHRDEIVKRVLKSRQVKETTILLNLQSKPEFKRVAKATYTLAELETN
>NZ_CP047918.1|WP_162371819.1|302205_304548_-|type-I-DNA-topoisomerase
MKNLVIVESPAKAKTIEKYLGNDFHVLSSVGHIRSIPKKTKDGTPPIDVKNGFATTYEIDPEKKKVISELKKQVKAVGPANVWLATDEDREGEAIAWHLCEVLKLDPATTKRIVFHEITKPAIEEAIKHPRTVDMKLVEAQQARQILDRVVGFELSPVVWRKVPGGKSAGRVQSPAVRLLVEREREIEAFNSSAQFKVTAIFIHDGQEFNAELKQRFDTEKEATEFLEGLVGATYTVSDITKSPSTRNPSAPFTTSTLQQEANSKLGMSSKATMTSAQKLYQEGRITYMRTDSVTLSSQAIASTADLVKCLYGIEYSHVRKFKTKSASAQEAHEAIRPTDITRESVSGNEYDQKLYDLIRRRTLASQMAPAKLENTTVTITISKTEQSSEKNKKLVFEAKGQVVVFDGFLRVYGSKDDTLLPAVSSGDTLQQYSVEARQVFSRPPARYTEGSLVKKLEELGIGRPSTYATIINTVQARGYAERGESEGTPRDIIVLQLIDGEVDREVIQEKTGSNRGKLVPTPSGELISDFLSNHFDQIVDYDFTSKVEAHFDDIATNRLARNTMLRDFYEPFHELIEGSGSIDRSTVGNSREIGVDPKTGKTILARFGRFGPMLQLGASDDSEKPQFAPMPRGAKIETVTLEQALEAFKLPRLVGQADDGQDIKANIGRFGPYIQVGKLFISIKDHDPHDIDLDTAKTLYAEKLKAEAEKNIADFGEIKVLRGRFGPYVTDGKKNAKIPKDIDPTTLTETEAKKLLDEAPAKSARGKTRRAPRRGSKKA
>NZ_CP047918.1|WP_162371820.1|304655_305024_-|hypothetical-protein
MSKNSYTLIEEVPGVEHVTTSCGGYSTGVRFADTYDAEEVAARIVIIRAEQAGVDPADVALQGDIAKETRVEVLRTLHKEAALRGAEATLRLRQAQEDARQSTERANWLWKKIEEEIRQQEA
>NZ_CP047918.1|WP_162371821.1|305353_305998_-|hypothetical-protein
MPQLTKQAKEMRLTNIEIIDESNATVHSSVRIADEESLESIRKEQHVVSAHAGSTEYDLTIEAADHHVMEAIAEAIATCAEKHGIARVYVEGIEDSLVLANAIGAEIRYKCEEALADIRHRGSLLREIREDAQNELYEIGCEEYQLDIEIHALEAELKKAEEEIRKLRSIKDELREGLEEIDRTERILKEKRRSVKKRKKSIRATTYSALITID
>NZ_CP047918.1|WP_162371822.1|306253_306682_-|hypothetical-protein
MSKKYRVDIKITGDMVTINSTTRLKEEHLDKIRKCPGVYNTMAVTGRYSVTILVGEAFDTLETTARVVTIIAKSRRPDRLDITGDHPVDIRQLVVAVKLKELDTAIKKALKKSERCRSRASRLNKRRIKLYLKGQEIGQQEA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP047918_1	1.1\|90337\|18\|NZ_CP047918\|CRT	90337-90354	18	NZ_CP047918.1	90295-90312	1.0
NZ_CP047918_1	1.3\|90433\|18\|NZ_CP047918\|CRT	90433-90450	18	NZ_CP047918.1	90295-90312	1.0
NZ_CP047918_3	3.1\|261924\|38\|NZ_CP047918\|CRT	261924-261961	38	NZ_CP047918.1	290646-290683	1.0

1. spacer 1.1|90337|18|NZ_CP047918|CRT matches to position: 90295-90312, mismatch: 0, identity: 1.0

ccgacgccgactccaacc	CRISPR spacer
ccgacgccgactccaacc	Protospacer
******************

2. spacer 1.3|90433|18|NZ_CP047918|CRT matches to position: 90295-90312, mismatch: 0, identity: 1.0

ccgacgccgactccaacc	CRISPR spacer
ccgacgccgactccaacc	Protospacer
******************

3. spacer 3.1|261924|38|NZ_CP047918|CRT matches to position: 290646-290683, mismatch: 0, identity: 1.0

cataatttgtagacggtgttgacggtagcgaagtttac	CRISPR spacer
cataatttgtagacggtgttgacggtagcgaagtttac	Protospacer
**************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	167596-167625	5	0.833
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	167596-167625	5	0.833
NZ_CP047918_3	3.11\|262592\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262592-262621	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1565765-1565794	5	0.833
NZ_CP047918_3	3.13\|262724\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262724-262753	30	NC_021077	Comamonas sp. 7D-2 plasmid pBHB, complete sequence	63897-63926	5	0.833
NZ_CP047918_4	4.10\|291314\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291314-291343	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1565765-1565794	5	0.833
NZ_CP047918_4	4.12\|291446\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291446-291475	30	NC_021077	Comamonas sp. 7D-2 plasmid pBHB, complete sequence	63897-63926	5	0.833
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	497849-497878	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	26490-26519	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	420686-420715	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	420764-420793	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	546167-546196	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	561463-561492	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	62265-62294	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	223136-223165	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	502375-502404	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	342846-342875	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	121856-121885	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_016652	Rhodococcus phage REQ2, complete genome	13598-13627	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	497849-497878	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	26490-26519	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	420686-420715	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	420764-420793	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	546167-546196	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	561463-561492	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	62265-62294	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	223136-223165	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	502375-502404	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	342846-342875	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_KY349138	Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence	121856-121885	6	0.8
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_016652	Rhodococcus phage REQ2, complete genome	13598-13627	6	0.8
NZ_CP047918_3	3.4\|262130\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262130-262159	30	MG592414	Vibrio phage 1.030.O._10N.222.55.F9, partial genome	18651-18680	6	0.8
NZ_CP047918_3	3.7\|262328\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262328-262357	30	MN856053	Siphoviridae sp. isolate 56, complete genome	3299-3328	6	0.8
NZ_CP047918_4	4.3\|290852\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	290852-290881	30	MG592414	Vibrio phage 1.030.O._10N.222.55.F9, partial genome	18651-18680	6	0.8
NZ_CP047918_4	4.6\|291050\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291050-291079	30	MN856053	Siphoviridae sp. isolate 56, complete genome	3299-3328	6	0.8
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1576323-1576352	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1070116-1070145	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	742957-742986	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	35394-35423	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5135280-5135309	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2579520-2579549	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	484174-484203	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	598143-598172	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP019065	Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence	55129-55158	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP047175	Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence	23377-23406	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP020813	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence	40868-40897	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	296546-296575	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	26087-26116	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	65933-65962	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	MN813684	Microbacterium phage Terij, complete genome	16176-16205	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	MN062704	Gordonia phage JuJu, complete genome	6209-6238	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP009804	Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence	19852-19881	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1296725-1296754	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1301393-1301422	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	312541-312570	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1576323-1576352	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1070116-1070145	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	742957-742986	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	35394-35423	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5135280-5135309	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2579520-2579549	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	484174-484203	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	598143-598172	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP019065	Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence	55129-55158	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP047175	Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence	23377-23406	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP020813	Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence	40868-40897	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	296546-296575	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	26087-26116	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	65933-65962	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	MN813684	Microbacterium phage Terij, complete genome	16176-16205	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	MN062704	Gordonia phage JuJu, complete genome	6209-6238	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP009804	Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence	19852-19881	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1296725-1296754	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1301393-1301422	7	0.767
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	312541-312570	7	0.767
NZ_CP047918_3	3.3\|262064\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262064-262093	30	NC_014840	Pantoea sp. At-9b plasmid pPAT9B03, complete sequence	105064-105093	7	0.767
NZ_CP047918_3	3.5\|262196\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262196-262225	30	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	128554-128583	7	0.767
NZ_CP047918_3	3.12\|262658\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262658-262687	30	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	111004-111033	7	0.767
NZ_CP047918_3	3.13\|262724\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262724-262753	30	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	402997-403026	7	0.767
NZ_CP047918_4	4.2\|290786\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	290786-290815	30	NC_014840	Pantoea sp. At-9b plasmid pPAT9B03, complete sequence	105064-105093	7	0.767
NZ_CP047918_4	4.4\|290918\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	290918-290947	30	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	128554-128583	7	0.767
NZ_CP047918_4	4.11\|291380\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291380-291409	30	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	111004-111033	7	0.767
NZ_CP047918_4	4.12\|291446\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291446-291475	30	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	402997-403026	7	0.767
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1205656-1205685	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1059206-1059235	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	15876-15905	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1070191-1070220	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	742882-742911	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	321361-321390	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	390543-390572	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	MG812496	Gordonia phage SallySpecial, complete genome	6357-6386	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	113565-113594	8	0.733
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	56797-56826	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1205656-1205685	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1059206-1059235	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	15876-15905	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1070191-1070220	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	742882-742911	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	321361-321390	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	390543-390572	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	MG812496	Gordonia phage SallySpecial, complete genome	6357-6386	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	113565-113594	8	0.733
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	NZ_CP030863	Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence	56797-56826	8	0.733
NZ_CP047918_3	3.5\|262196\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262196-262225	30	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	80224-80253	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	KX160209	Lactococcus phage 58502, complete genome	19967-19996	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	NC_049810	Lactococcus phage 50902, complete genome	20507-20536	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	MN552144	Lactococcus phage P1045, complete genome	20875-20904	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	KX160211	Lactococcus phage 62503, complete genome	20286-20315	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	KX160210	Lactococcus phage 62502, complete genome	20344-20373	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	JX567312	Lactococcus phage BM13, complete genome	20640-20669	8	0.733
NZ_CP047918_3	3.10\|262526\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262526-262555	30	JX564242	Lactococcus phage Q33, complete genome	21254-21283	8	0.733
NZ_CP047918_3	3.12\|262658\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262658-262687	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	373590-373619	8	0.733
NZ_CP047918_4	4.4\|290918\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	290918-290947	30	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	80224-80253	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	KX160209	Lactococcus phage 58502, complete genome	19967-19996	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	NC_049810	Lactococcus phage 50902, complete genome	20507-20536	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	MN552144	Lactococcus phage P1045, complete genome	20875-20904	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	KX160211	Lactococcus phage 62503, complete genome	20286-20315	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	KX160210	Lactococcus phage 62502, complete genome	20344-20373	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	JX567312	Lactococcus phage BM13, complete genome	20640-20669	8	0.733
NZ_CP047918_4	4.9\|291248\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291248-291277	30	JX564242	Lactococcus phage Q33, complete genome	21254-21283	8	0.733
NZ_CP047918_4	4.11\|291380\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291380-291409	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	373590-373619	8	0.733
NZ_CP047918_3	3.12\|262658\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262658-262687	30	NZ_CP005961	Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence	172576-172605	9	0.7
NZ_CP047918_3	3.13\|262724\|30\|NZ_CP047918\|CRT,PILER-CR,CRISPRCasFinder	262724-262753	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1247711-1247740	9	0.7
NZ_CP047918_4	4.11\|291380\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291380-291409	30	NZ_CP005961	Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence	172576-172605	9	0.7
NZ_CP047918_4	4.12\|291446\|30\|NZ_CP047918\|PILER-CR,CRISPRCasFinder,CRT	291446-291475	30	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1247711-1247740	9	0.7
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	MH744418	Streptomyces phage JustBecause, complete genome	90761-90790	11	0.633
NZ_CP047918_1	1.2\|90379\|30\|NZ_CP047918\|CRT	90379-90408	30	MT310898	Streptomyces phage Kela, complete genome	90641-90670	11	0.633
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	MH744418	Streptomyces phage JustBecause, complete genome	90761-90790	11	0.633
NZ_CP047918_1	1.4\|90475\|30\|NZ_CP047918\|CRT	90475-90504	30	MT310898	Streptomyces phage Kela, complete genome	90641-90670	11	0.633

1. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.833

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccggcccccacgccgactccggct	Protospacer
********* **** ***********..*.

2. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.833

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccggcccccacgccgactccggct	Protospacer
********* **** ***********..*.

3. spacer 3.11|262592|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 5, identity: 0.833

agcacaaggcttgaagtggaccgagcaacg	CRISPR spacer
accccaaggcttaaagtggactgagcaagg	Protospacer
* * ********.********.****** *

4. spacer 3.13|262724|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 5, identity: 0.833

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
aaaattgccaccttgatgtccttgtcgtag	Protospacer
*.. ******* *** **************

5. spacer 4.10|291314|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 5, identity: 0.833

agcacaaggcttgaagtggaccgagcaacg	CRISPR spacer
accccaaggcttaaagtggactgagcaagg	Protospacer
* * ********.********.****** *

6. spacer 4.12|291446|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 5, identity: 0.833

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
aaaattgccaccttgatgtccttgtcgtag	Protospacer
*.. ******* *** **************

7. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcgacgccgtccccgccgccgacgcccggc	Protospacer
.************** ******* ** . *

8. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagaacg	Protospacer
********* * ***********   ***

9. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgaccgcgaca	Protospacer
********* * ***********. *.**

10. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgaccgcgaca	Protospacer
********* * ***********. *.**

11. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgaca	Protospacer
********* * *********** .*.**

12. spacer 1.2|90379|30|NZ_CP047918|CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcaccgccgtccccgacgccggctccgaca	Protospacer
.*. *****************.****.**

13. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggcatcg	Protospacer
********* * ***********  ** *

14. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagaacg	Protospacer
********* * ***********   ***

15. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgacg	Protospacer
********* * *********** .*.**

16. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggaaccc	Protospacer
********* * ***********   * **

17. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc--	CRISPR spacer
gcgacgccgccaccgacgccgact--gaccac	Protospacer
 ********.* ************  .***

18. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgac---tccaacc	CRISPR spacer
ccgacgccgtcttcgacgccgacgtatcga---	Protospacer
***********..**********   ** *

19. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcgacgccgtccccgccgccgacgcccggc	Protospacer
.************** ******* ** . *

20. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagaacg	Protospacer
********* * ***********   ***

21. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgaccgcgaca	Protospacer
********* * ***********. *.**

22. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgaccgcgaca	Protospacer
********* * ***********. *.**

23. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgaca	Protospacer
********* * *********** .*.**

24. spacer 1.4|90475|30|NZ_CP047918|CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcaccgccgtccccgacgccggctccgaca	Protospacer
.*. *****************.****.**

25. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggcatcg	Protospacer
********* * ***********  ** *

26. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagaacg	Protospacer
********* * ***********   ***

27. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgacg	Protospacer
********* * *********** .*.**

28. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggaaccc	Protospacer
********* * ***********   * **

29. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_KY349138 (Mycolicibacterium sp. CBMA 213 plasmid pCBMA213_2, complete sequence) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgactccaacc--	CRISPR spacer
gcgacgccgccaccgacgccgact--gaccac	Protospacer
 ********.* ************  .***

30. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 6, identity: 0.8

ccgacgccgtccccgacgccgac---tccaacc	CRISPR spacer
ccgacgccgtcttcgacgccgacgtatcga---	Protospacer
***********..**********   ** *

31. spacer 3.4|262130|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to MG592414 (Vibrio phage 1.030.O._10N.222.55.F9, partial genome) position: , mismatch: 6, identity: 0.8

atgtcgg-taaatcttgataagatagccaaa	CRISPR spacer
-cgcgggtttaaacttgataagatagccaaa	Protospacer
 .*. ** * ** ******************

32. spacer 3.7|262328|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to MN856053 (Siphoviridae sp. isolate 56, complete genome) position: , mismatch: 6, identity: 0.8

gcaattgtgcaaatcgtctcaaactcagct	CRISPR spacer
cctcttgtgcaacacgtctcaaactcaggt	Protospacer
 *  ********  ************** *

33. spacer 4.3|290852|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to MG592414 (Vibrio phage 1.030.O._10N.222.55.F9, partial genome) position: , mismatch: 6, identity: 0.8

atgtcgg-taaatcttgataagatagccaaa	CRISPR spacer
-cgcgggtttaaacttgataagatagccaaa	Protospacer
 .*. ** * ** ******************

34. spacer 4.6|291050|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to MN856053 (Siphoviridae sp. isolate 56, complete genome) position: , mismatch: 6, identity: 0.8

gcaattgtgcaaatcgtctcaaactcagct	CRISPR spacer
cctcttgtgcaacacgtctcaaactcaggt	Protospacer
 *  ********  ************** *

35. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gaatccccgtccccgacaccgactccgacc	Protospacer
  . * ***********.********.***

36. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgaagccgtccccgacgccgacctggtca	Protospacer
**** ******************.. . *

37. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgaagccgtccccgacgccgacctggtca	Protospacer
**** ******************.. . *

38. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccccgaccccgagtcggcgt	Protospacer
***************** **** ** .  .

39. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcatcgccgtctccgacgccgactccttcg	Protospacer
.*. *******.**************  *

40. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgatcatc	Protospacer
********* * ***********  . *.*

41. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccgcgtcgccgactggtggc	Protospacer
************ ** ********   . *

42. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgtcgccgtccccgaccccgacgatgatc	Protospacer
*** ************* *****  ..*.*

43. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP019065 (Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcgaggccgtccccgatgccgactcgctgc	Protospacer
 *** ***********.********    *

44. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP047175 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgcaacta	Protospacer
********* * *********** * * .

45. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP020813 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagggcc	Protospacer
********* * ***********   ..**

46. spacer 1.2|90379|30|NZ_CP047918|CRT matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccggcgccgtcctcgacgccgacgaccggc	Protospacer
***.********.**********  * . *

47. spacer 1.2|90379|30|NZ_CP047918|CRT matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
aggtcaccgtccccggcgccgactccgaca	Protospacer
  * *.*********.**********.**

48. spacer 1.2|90379|30|NZ_CP047918|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
cacagatcgtccccgacgccgacttcaccc	Protospacer
*  * ..*****************.** **

49. spacer 1.2|90379|30|NZ_CP047918|CRT matches to MN813684 (Microbacterium phage Terij, complete genome) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacggcatccccgacgccgacgcacgca	Protospacer
****** *.************** *  .*

50. spacer 1.2|90379|30|NZ_CP047918|CRT matches to MN062704 (Gordonia phage JuJu, complete genome) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgctcagg	Protospacer
********* * *********** *. *

51. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP009804 (Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgagt	Protospacer
********* * *********** .*.* .

52. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
acgacgccgccgccgacgccgacttccttc	Protospacer
 ********.* ************.*  .*

53. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
acgacgccgccgccgacgccgacttccttc	Protospacer
 ********.* ************.*  .*

54. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggccgcg	Protospacer
********* * ***********  * .*

55. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gaatccccgtccccgacaccgactccgacc	Protospacer
  . * ***********.********.***

56. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgaagccgtccccgacgccgacctggtca	Protospacer
**** ******************.. . *

57. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgaagccgtccccgacgccgacctggtca	Protospacer
**** ******************.. . *

58. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccccgaccccgagtcggcgt	Protospacer
***************** **** ** .  .

59. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tcatcgccgtctccgacgccgactccttcg	Protospacer
.*. *******.**************  *

60. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgatcatc	Protospacer
********* * ***********  . *.*

61. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccgcgtcgccgactggtggc	Protospacer
************ ** ********   . *

62. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgtcgccgtccccgaccccgacgatgatc	Protospacer
*** ************* *****  ..*.*

63. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP019065 (Rahnella sp. ERMR1:05 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcgaggccgtccccgatgccgactcgctgc	Protospacer
 *** ***********.********    *

64. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP047175 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgcaacta	Protospacer
********* * *********** * * .

65. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP020813 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgagggcc	Protospacer
********* * ***********   ..**

66. spacer 1.4|90475|30|NZ_CP047918|CRT matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccggcgccgtcctcgacgccgacgaccggc	Protospacer
***.********.**********  * . *

67. spacer 1.4|90475|30|NZ_CP047918|CRT matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
aggtcaccgtccccggcgccgactccgaca	Protospacer
  * *.*********.**********.**

68. spacer 1.4|90475|30|NZ_CP047918|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
cacagatcgtccccgacgccgacttcaccc	Protospacer
*  * ..*****************.** **

69. spacer 1.4|90475|30|NZ_CP047918|CRT matches to MN813684 (Microbacterium phage Terij, complete genome) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacggcatccccgacgccgacgcacgca	Protospacer
****** *.************** *  .*

70. spacer 1.4|90475|30|NZ_CP047918|CRT matches to MN062704 (Gordonia phage JuJu, complete genome) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgctcagg	Protospacer
********* * *********** *. *

71. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP009804 (Streptomyces sp. FR-008 plasmid pSSFR2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgtcgagt	Protospacer
********* * *********** .*.* .

72. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
acgacgccgccgccgacgccgacttccttc	Protospacer
 ********.* ************.*  .*

73. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
acgacgccgccgccgacgccgacttccttc	Protospacer
 ********.* ************.*  .*

74. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.767

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacggccgcg	Protospacer
********* * ***********  * .*

75. spacer 3.3|262064|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NC_014840 (Pantoea sp. At-9b plasmid pPAT9B03, complete sequence) position: , mismatch: 7, identity: 0.767

attcttgaccagacaatcatctctggcgcg	CRISPR spacer
tgaattgaccagaccatcatgtctggcgag	Protospacer
    ********** ***** ******* *

76. spacer 3.5|262196|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 7, identity: 0.767

cgccaccagaaaatgtcacggcgactatgg	CRISPR spacer
ggccaccagaaaatgttacggctatctggg	Protospacer
 ***************.***** *..  **

77. spacer 3.12|262658|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 7, identity: 0.767

gtaat--gctgccagtgcttccttgctggctg	CRISPR spacer
--aatcgactgccaatgcttccttgctgggac	Protospacer
  ***  .******.**************

78. spacer 3.13|262724|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 7, identity: 0.767

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
acatggacgacattgttgtccttgtcgaag	Protospacer
* .*  .* ****************** **

79. spacer 4.2|290786|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NC_014840 (Pantoea sp. At-9b plasmid pPAT9B03, complete sequence) position: , mismatch: 7, identity: 0.767

attcttgaccagacaatcatctctggcgcg	CRISPR spacer
tgaattgaccagaccatcatgtctggcgag	Protospacer
    ********** ***** ******* *

80. spacer 4.4|290918|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 7, identity: 0.767

cgccaccagaaaatgtcacggcgactatgg	CRISPR spacer
ggccaccagaaaatgttacggctatctggg	Protospacer
 ***************.***** *..  **

81. spacer 4.11|291380|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 7, identity: 0.767

gtaat--gctgccagtgcttccttgctggctg	CRISPR spacer
--aatcgactgccaatgcttccttgctgggac	Protospacer
  ***  .******.**************

82. spacer 4.12|291446|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 7, identity: 0.767

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
acatggacgacattgttgtccttgtcgaag	Protospacer
* .*  .* ****************** **

83. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcaccgccgaccccgacgccgactcggaag	Protospacer
 *. ***** *************** .*

84. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcaccgccgaccccgacgccgactcggaag	Protospacer
 *. ***** *************** .*

85. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgacgctt	Protospacer
********* * ***********  *. ..

86. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tggaggccgtccccgacgccgacgtcctcg	Protospacer
. ** ****************** .*  *

87. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tggaggccgtccccgacgccgacgtcctcg	Protospacer
. ** ****************** .*  *

88. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gtgacgccgtccgcgacgccgacggtcaca	Protospacer
 .********** **********  . **

89. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgacgggcttc	Protospacer
********* * ***********     .*

90. spacer 1.2|90379|30|NZ_CP047918|CRT matches to MG812496 (Gordonia phage SallySpecial, complete genome) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccggcgccgacgccgacctctgag	Protospacer
********* * ***********..* .

91. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgcggggg	Protospacer
********* * *********** * ..

92. spacer 1.2|90379|30|NZ_CP047918|CRT matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccgcgacgccggacacgccg	Protospacer
************ ********. . *. *

93. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcaccgccgaccccgacgccgactcggaag	Protospacer
 *. ***** *************** .*

94. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gcaccgccgaccccgacgccgactcggaag	Protospacer
 *. ***** *************** .*

95. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgacgctt	Protospacer
********* * ***********  *. ..

96. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tggaggccgtccccgacgccgacgtcctcg	Protospacer
. ** ****************** .*  *

97. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
tggaggccgtccccgacgccgacgtcctcg	Protospacer
. ** ****************** .*  *

98. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
gtgacgccgtccgcgacgccgacggtcaca	Protospacer
 .********** **********  . **

99. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacaccgacgccgacgggcttc	Protospacer
********* * ***********     .*

100. spacer 1.4|90475|30|NZ_CP047918|CRT matches to MG812496 (Gordonia phage SallySpecial, complete genome) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccggcgccgacgccgacctctgag	Protospacer
********* * ***********..* .

101. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgacgccgacgccgacgcggggg	Protospacer
********* * *********** * ..

102. spacer 1.4|90475|30|NZ_CP047918|CRT matches to NZ_CP030863 (Streptomyces globosus strain LZH-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccgacgccgtccccgacgccgactccaacc	CRISPR spacer
ccgacgccgtccgcgacgccggacacgccg	Protospacer
************ ********. . *. *

103. spacer 3.5|262196|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgccaccagaaaatgtcacggcgactatgg	CRISPR spacer
ggccaccagaaaatgttacggctgtctggg	Protospacer
 ***************.***** ...  **

104. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to KX160209 (Lactococcus phage 58502, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

105. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NC_049810 (Lactococcus phage 50902, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

106. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to MN552144 (Lactococcus phage P1045, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

107. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to KX160211 (Lactococcus phage 62503, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

108. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to KX160210 (Lactococcus phage 62502, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

109. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to JX567312 (Lactococcus phage BM13, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

110. spacer 3.10|262526|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to JX564242 (Lactococcus phage Q33, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

111. spacer 3.12|262658|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtaatgctgccagtgcttccttgctggctg	CRISPR spacer
gaccggctgccagtgcttcctcgcgggcac	Protospacer
*    ****************.** ***

112. spacer 4.4|290918|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgccaccagaaaatgtcacggcgactatgg	CRISPR spacer
ggccaccagaaaatgttacggctgtctggg	Protospacer
 ***************.***** ...  **

113. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to KX160209 (Lactococcus phage 58502, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

114. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NC_049810 (Lactococcus phage 50902, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

115. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to MN552144 (Lactococcus phage P1045, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

116. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to KX160211 (Lactococcus phage 62503, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

117. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to KX160210 (Lactococcus phage 62502, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

118. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to JX567312 (Lactococcus phage BM13, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

119. spacer 4.9|291248|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to JX564242 (Lactococcus phage Q33, complete genome) position: , mismatch: 8, identity: 0.733

atgttgaataaagcaacgacaagacagaaa	CRISPR spacer
tgattgaagaaatcaacgacaagacaatca	Protospacer
  .***** *** *************.  *

120. spacer 4.11|291380|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtaatgctgccagtgcttccttgctggctg	CRISPR spacer
gaccggctgccagtgcttcctcgcgggcac	Protospacer
*    ****************.** ***

121. spacer 3.12|262658|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP005961 (Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gtaatgctgccagtgcttccttgctggctg	CRISPR spacer
cctgcgctgccagtgcggccttgctggcga	Protospacer
 . ..***********  ********** .

122. spacer 3.13|262724|30|NZ_CP047918|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.7

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
gatcccaccacattgccgtccttgtcgtag	Protospacer
.. ....********..*************

123. spacer 4.11|291380|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005961 (Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

gtaatgctgccagtgcttccttgctggctg	CRISPR spacer
cctgcgctgccagtgcggccttgctggcga	Protospacer
 . ..***********  ********** .

124. spacer 4.12|291446|30|NZ_CP047918|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.7

aggtttgccacattgttgtccttgtcgtag	CRISPR spacer
gatcccaccacattgccgtccttgtcgtag	Protospacer
.. ....********..*************

125. spacer 1.2|90379|30|NZ_CP047918|CRT matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 11, identity: 0.633

ccgacgccgtccccgacgccgactccaacc------	CRISPR spacer
------ccgacgccgacgccgacgccgacgaggcgg	Protospacer
      *** * *********** **.**

126. spacer 1.2|90379|30|NZ_CP047918|CRT matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 11, identity: 0.633

ccgacgccgtccccgacgccgactccaacc------	CRISPR spacer
------ccgacgccgacgccgacgccgacgaggcgg	Protospacer
      *** * *********** **.**

127. spacer 1.4|90475|30|NZ_CP047918|CRT matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 11, identity: 0.633

ccgacgccgtccccgacgccgactccaacc------	CRISPR spacer
------ccgacgccgacgccgacgccgacgaggcgg	Protospacer
      *** * *********** **.**

128. spacer 1.4|90475|30|NZ_CP047918|CRT matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 11, identity: 0.633

ccgacgccgtccccgacgccgactccaacc------	CRISPR spacer
------ccgacgccgacgccgacgccgacgaggcgg	Protospacer
      *** * *********** **.**

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047918

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection