CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	0 crisprs	csa3	0	0
NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	0 crisprs	NA	0	0
NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	0 crisprs	PD-DExK	0	0
NZ_CP048280	Rhizobium leguminosarum bv. viciae 248 chromosome, complete genome	4 crisprs	cas3,csa3,WYL,DEDDh	3	7
NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	0 crisprs	NA	0	0
NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	0 crisprs	csa3,DEDDh	0	42

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048280_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048280_1

595977-596064

Orphan

Consensus_repeat	Method
AATGCATGCCGCCCGGAAGTGTGAAGCGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048280_1

>merge|NZ_CP048280|1|595977-596064|CRISPRCasFinder
AATGCATGCCGCCCGGAAGTGTGAAGCGGTTCCGGGATAAAGGCATGCATAAAATAAAATGCATGCCGCCCGGAAGTGTGCAGCGGTT

>NZ_CP048280|1|1|595977-596064|CRISPRCasFinder
AATGCATGCCGCCCGGAAGTGTGAAGCGGTT	CCGGGATAAAGGCATGCATAAAATAA
AATGCATGCCGCCCGGAAGTGTGCAGCGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048280.1\|WP_003545854.1\|602367_602595_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NZ_CP048280.1\|WP_020048678.1\|602672_603296_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|169692
NZ_CP048280.1\|WP_020048675.1\|601152_601485_+\|F0F1-ATP-synthase-assembly-protein	unknown	unknown	gnl\|CDD\|227641
NZ_CP048280.1\|WP_020048668.1\|592394_593192_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP048280.1\|WP_020048676.1\|601547_602300_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP048280.1\|WP_020048673.1\|597374_599273_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP048280.1\|WP_032999354.1\|591523_592285_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP048280.1\|WP_020048680.1\|605283_606441_-\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP048280.1\|WP_020048662.1\|586822_588187_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP048280.1\|WP_020048666.1\|590606_591524_-\|2-dehydro-3-deoxygalactonokinase	unknown	unknown	gnl\|CDD\|226257
NZ_CP048280.1\|WP_012756242.1\|603299_603791_+\|F0F1-ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|169691
NZ_CP048280.1\|WP_026264963.1\|584947_586669_+\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NZ_CP048280.1\|WP_020048664.1\|589067_589955_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|225921
NZ_CP048280.1\|WP_020048679.1\|604319_605009_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NZ_CP048280.1\|WP_032999146.1\|596378_597356_+\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213371
NZ_CP048280.1\|WP_020048669.1\|593188_593446_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_020048674.1\|599651_600881_+\|cell-wall-hydrolase	unknown	unknown	gnl\|CDD\|226296
NZ_CP048280.1\|WP_032999143.1\|593445_594180_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132580
NZ_CP048280.1\|WP_020048665.1\|589951_590593_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	unknown	unknown	gnl\|CDD\|181670
NZ_CP048280.1\|WP_020048663.1\|588240_588846_-\|PRC-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|368352

Protein	Function_ID	Function_description	E-value
NZ_CP048280.1\|WP_003545854.1\|602367_602595_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	7.89276e-27
NZ_CP048280.1\|WP_020048678.1\|602672_603296_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|169692	PRK09174, PRK09174, F0F1 ATP synthase subunit B.	4.53006e-90
NZ_CP048280.1\|WP_020048675.1\|601152_601485_+\|F0F1-ATP-synthase-assembly-protein	gnl\|CDD\|227641	COG5336, COG5336, Uncharacterized protein conserved in bacteria [Function unknown].	1.05246e-38
NZ_CP048280.1\|WP_020048668.1\|592394_593192_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.07495e-67
NZ_CP048280.1\|WP_020048676.1\|601547_602300_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	1.83924e-64
NZ_CP048280.1\|WP_020048673.1\|597374_599273_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP048280.1\|WP_032999354.1\|591523_592285_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.83384e-62
NZ_CP048280.1\|WP_020048680.1\|605283_606441_-\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.60507e-24
NZ_CP048280.1\|WP_020048662.1\|586822_588187_+\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	7.89134e-112
NZ_CP048280.1\|WP_020048666.1\|590606_591524_-\|2-dehydro-3-deoxygalactonokinase	gnl\|CDD\|226257	COG3734, DgoK, 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism].	1.03424e-119
NZ_CP048280.1\|WP_012756242.1\|603299_603791_+\|F0F1-ATP-synthase-subunit-B	gnl\|CDD\|169691	PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated.	4.08454e-72
NZ_CP048280.1\|WP_026264963.1\|584947_586669_+\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.812e-36
NZ_CP048280.1\|WP_020048664.1\|589067_589955_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|225921	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism].	4.27436e-87
NZ_CP048280.1\|WP_020048679.1\|604319_605009_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	4.59872e-104
NZ_CP048280.1\|WP_032999146.1\|596378_597356_+\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213371	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily. A uncharacterized subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. The EcCorA_ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA_ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.60963e-155
NZ_CP048280.1\|WP_020048674.1\|599651_600881_+\|cell-wall-hydrolase	gnl\|CDD\|226296	COG3773, SleB, Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane].	1.16322e-85
NZ_CP048280.1\|WP_032999143.1\|593445_594180_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|132580	TIGR03541, reg_near_HchA, LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.	5.96064e-20
NZ_CP048280.1\|WP_020048665.1\|589951_590593_-\|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase	gnl\|CDD\|181670	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed.	1.49826e-112
NZ_CP048280.1\|WP_020048663.1\|588240_588846_-\|PRC-barrel-domain-containing-protein	gnl\|CDD\|368352	pfam05239, PRC, PRC-barrel domain. The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.	9.12794e-11

>NZ_CP048280.1|WP_032999143.1|593445_594180_+|LuxR-family-transcriptional-regulator
MAPLSQTSTEEDDYVQEIAGLKTQFDIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTVITSWPAELLALYDQEGLMVNSPVLRRLRTSARPFFYDMSRHNLSRDDGKSNLVASLFERFKMMRCAYFPTHDPSGLRGAVSFAGDREPFSAAEMRELSYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLIK
>NZ_CP048280.1|WP_020048669.1|593188_593446_+|hypothetical-protein
MTEDRRRPLLDVIAEHAYDKRDIEIFRRITTTRTVREIYNHSPAETLNAEADSNQRSSFPDAIETPIAGRFRKRFAGRCAENEEM
>NZ_CP048280.1|WP_020048668.1|592394_593192_+|IclR-family-transcriptional-regulator
MNSNGESAAQTRETGTLGKLMVLLDLVTHADAPLRFTDILALAGQPRGTLHRQLTHLVEEGLLELDGDGRYTPGLRLLDFAARSWARNEFRLIAEPHLRDLQQATGETVHLGVLRGQSIIYLDKVEGRQPVRMYSQIGNASPCYCTGVGKAALSLLPAESLVDLLAGLSFTSFTTSTHVSAETLLAEIREIADRGYAFDREEHEAGIRCVAAPIWSEDRTFMGGISITGPAYRLSMELLHQWSVPVQLAAASIMEGMRVRLGPRR
>NZ_CP048280.1|WP_032999354.1|591523_592285_-|SDR-family-oxidoreductase
MAAQFPEFKDRAVLVTGGGSGIGAAIVEGFARQGAKVSFIDIAEIAGRELAERLSRETAHPVSFHHADLRDIEAIRRTVDTVVASSGPIRVLVNNAAWDDRHEFDAVTEAYWDNNQAVNLKHVFFTSQAVVPSMRTVGGGAIINMSSIAFKLNMGGFPAYAAAKAAVVGLTKSLAGRLGPENIRVNCILPGMVVTERQMQHWLTEESIARSVEDQCLKVALKPDAIVGPCLFLASDCAAAMTAQSLIVDGGVL
>NZ_CP048280.1|WP_020048666.1|590606_591524_-|2-dehydro-3-deoxygalactonokinase
MTNPAYVAVDWGTSSFRLWLIGRDGTVLAERRSGEGMTSAAKTGFSAVLAGHLAAIEAPENLPVIVCGMAGARQGWVEAGYIDVPAPLVSILTGAVSVPGESRDIRILPGLAQRDMARPDVMRGEETQLLGALGRASSGAQAVCMPGTHSKWVHVTDSKVTGFSTFMTGELFDVISKHTILSHAVAGAEEQPADAAAFGAAVSAAFTRPALASNLLFAARSGQLLHGISAAAAQARLSGTLIGLEIAGALQDAANGTTITLVASGRLQALYEQAFRTLSLAFTAIDADAAVRRGLSAAAEAIWPN
>NZ_CP048280.1|WP_020048665.1|589951_590593_-|2-dehydro-3-deoxy-6-phosphogalactonate-aldolase
MNRIPFPDMKRPLIAILRGIRPDETESVVGALIENGLTAIEIPLNSPEPFKSIELAAKMAPPEVLIGAGTVLTIEAVDSLHAAGGKLLVTPNVEPEVIIRAREYGMVTMPGVFTPTEALAAARAGAAGLKFFPASVLGPSGITAIRAILPPELTIAAVGGVSDKNFGDYTKAGIFAFGLGTSIYKPGMTASEVAERAKATIYAYDAAIGSVKV
>NZ_CP048280.1|WP_020048664.1|589067_589955_-|SMP-30/gluconolactonase/LRE-family-protein
MTDIYEFEGKTLCNTNSVLGEGPTYDPDSNTVWWFNILGKELHELNLSTSEKKVHPLPVMASVLARIDAGRQLIATEEGLFVRDVANGNLTFYAALENDRPENRSNDGRTHPSGALWIGTMSKRAENQAGAIYHVAGGKVTKIFNGISIPNSICFSPDGTIGYYTDSRINRLMRVMVDPLTGLPSGEPIVLVDSMNEPGDIDGSVVDADGYIWNARWGAGVVDRYNPDGLRISRYTVPAVQPSCPAFIGVNADRLAVTTAWEGLDEDARSAQPSAGALLELGIDVKGVFDPVYVI
>NZ_CP048280.1|WP_020048663.1|588240_588846_-|PRC-barrel-domain-containing-protein
MTRKLLTTVAAGALFATAFAPAAFSQTAPQPADPAAPTQTAPADPAAPKPMTPDVTKPAGDAAQAPAPAPTADTAQAAYLTEQAPDQISANTYIGQSVYNGNNESIGSVNDLILKKDGGFVAAIVGVGGFLGIGEKNVAVPMEKITVAQNTQDGSVKLTTSETAESLKAAPEFKTLAMLAAEKAPAATGTDTTATGSTTPK
>NZ_CP048280.1|WP_020048662.1|586822_588187_+|EAL-domain-containing-protein
MMKSADIAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQISAERASDPAPFTIGIVNLDSFKPINDLFGSTAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAENFGQMIREVLSAPYDLGDRNVRLSASLGFSIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEERGFIDALSEALLRKAAEAALSWPRELFLSFNLSSAQLMDPGTSSSVLSILGRVGFDPHRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDRAFVSRINSDRASEHIIKAILTMCEGLELEVVAEGIEDYAEAVKLRTLGCGMGQGYHFGRPADGIATLRFLHENYYDPTMAERASA
>NZ_CP048280.1|WP_026264963.1|584947_586669_+|response-regulator
MSAGFEKADTSSEIDGAPAEADLQTALFDVVCDSLSAAFIIYDKNDHLIFASRQTLEFFPLPAEMLKPGTRLRDFLGAMYDTGIRQQYDVRQGGSLSREDWLSQKIASHWRERFDAVERHGADSWVRFVKRRLPGGYGVTIISDISENKKREEQWRSDLERVQLTEDILDNLPFPLFVKDRNLTYVAVNLAFCEKYQTSADEVLGRKSGDLFSEEIAKRFEESDRHVLETGEMSVSRQRQISRDGIERDIVSRKHRIGKPGRYFLVSTMQDLPRDGADLDEFGQASAITASSNQSYRRAYVPVPTGIARREPAAMEAIVPENFSGRKVLVVTADLAAETAALRTLTKYGFESCSVRGEDEEERFLEISTSSGISLDLLIIDNQMGMRCLELAEQYGIPALVMDGFQIANELTFQIARHFNRNSRSAAGSDADWEITISDDPVGLQILVAEDNDINQIVFSQILEGLGYRHMLAATGDEAVRLWAEHRPQIVLMDISLPGFNGFEAARLIRQMEETGGGTRTPIIGVLTQAFERDRAECVKSGMDDVIMKPVSPDMLETVFQKYLMNEAMRARN
>NZ_CP048280.1|WP_032999146.1|596378_597356_+|magnesium-transporter-CorA-family-protein
MITAYCSNCRSVEIHDLSHAASFPEDVVWIDMIEPTRDEELYVEKILGIEVPTRDDLKDIEPSARLYVENDAVFMTASLLWKADTDVPTLTDVAFILAGNRLVTIRYAHPKSFALFIAALHRLPENWRSGAALLAKLLETIVDRTAEILEISVSRIDILSTHVFGDRAKKVRKPSNYLEEKLRDIAGHHRMISKVRDSLGSLARLLTFFHTIPAIQQDREAKELCRTVSRDIQSLSEHASFVAANITFLLDASLGLINIEQNSIIKIFSIASVVFLPPTLVASVYGMNFQVMPELTWAAGYPYSLALMVISAVIPFFFFRWKGWL
>NZ_CP048280.1|WP_020048673.1|597374_599273_+|potassium-transporter-Kup
MSEDSHPNERHMTPKKLFYLGLGSVGVVYGDIGTSPLYAFREALKPVAHDGLTRFEVISLISLMIWALTIIVTVKYVLFLLRADNDGEGGTLSLLALLMKTANGHTAMLMLLGLMGAALFLGDAMITPALSVLSAVEGLRLVTPSLADYIVPISVVILALLFVVQSRGTGAVAKFFGPITAVWFLVMAAAGISHISDDYGILAAFNPYYAVSFLLHEGFYGVVVLGAVFLTVTGAEALYADLGHFGRRPIQWAWFLLVFPALTLNYLGQGALVLGNPATMSDPFYLMYPKWALLPVVILATAATIIASQAVITGAFSMVRQGINLGFLPRMEILFTSETNTGQIFVPSVNAVLFIGVIFLVLSFKTSDALATAYGISVTGAMVVTSIMAFEFVRARWNWSLPVAVIALVPLVVLELIFLGANLLKIHDGGYIPILIATAFTVVMWTWRRGTAILMEKTRHTDIPLASFVSSIERKSEHSPAQVPGTAIFLTSDPESAPAALLHNLKHNHVLHDRNVILTIRTINKPRVPSHDRYRVEQISERFSRVELLFGFMESQNVSQALATLRKTGLKFDIMSTSFYLGRRKLVPDAKSGMPYWQDRLYIALANAAANPSDYFRLPANRVVELGSHVII
>NZ_CP048280.1|WP_020048674.1|599651_600881_+|cell-wall-hydrolase
MECSRVPCPESVLRRKSPSRSKLRLIPENWVSPAIFGLASWLIFPSAASHADLAAMLAGLDHEGENWRMVLTNSPAGSIHQAELAFAEPTVTDSISAGAGMVLPDGRKVAFNTKDKGTAKDRGHEDTPDEDRVNRGSKKGRVVAVEKMQPPKDFSAGSILERTKMLFTPSFDLKDRSAFVKPKIQGKEIEIATSFYKTQPVVTDNGVPAMLASLVTSNKADVLATAYTPAAPDYARQSPFDSILAEQDSGRFVPEIGPRDHAWAASVLAPSVFSAREQQCLASGIYFEARGESVKGQAAVAQVILNRVRNPSYPKTICGVVYQNEDWRNRCQFSFACDSIKDRVNSEYHWRVARDVAMAVTSGKIWLPQVGSATHYHALYVRPKWAKTMEKVGRIGLHVFYRTYGGGWS
>NZ_CP048280.1|WP_020048675.1|601152_601485_+|F0F1-ATP-synthase-assembly-protein
MADDREESLEKRRAQLEAKLATKRVETGQDEAREARAEVSRKGYAQAMKLSSEFISAIVVGALLGYLLDRFVGTAPWGLIVLLLLGFCAGVLNVLRSAGVVAHPLDDDKK
>NZ_CP048280.1|WP_020048676.1|601547_602300_+|F0F1-ATP-synthase-subunit-A
MSNDPTHQFLIQKIVPIEIGGIDFSFTNASLFMAVSAAAAAGFLYFATSNRAIVPGRSQSVAEMSYEFIANMLKEGAGKQGMKFFPLVFSLFMFVLTANLLGMFPYFFTVTSQIIVTFALAILVIGTVLVYGFYKHGFHFLNVFVPSGVPGILLPLVVTIEIISFLSRPISLSVRLFANMLAGHITLKVFAGFVASLGTMGALGIGGAVLPLIMTVALTGLEFLVAFLQAYVFAVLTCMYLNDAIHPGGH
>NZ_CP048280.1|WP_003545854.1|602367_602595_+|F0F1-ATP-synthase-subunit-C
MEAEAAKYIGAGLACFGMAGTALGLGNIFGSYLSGALRNPSAADSQFGRLVFGFAVTEALGIFSLLVALLLLFAV
>NZ_CP048280.1|WP_020048678.1|602672_603296_+|F0F1-ATP-synthase-subunit-B
MFFVTPAYAEEAPAAATGTDAHAAPAAGEVHTETGVADGEHARGPFPPFDSTTYASQLLWLVITFGVFYLLMQKVIAPRIGTILDQRHTRISQDLEEAGRLKAEADAAVQTYEGELAAARAKSNAIGSAARDAAKAKAEEERRAVESSLSEKIKAAEHRIGEIKAKAFADVGTIAEETAAAVVDQLIGGTVAKADVAAAVAAAKKEA
>NZ_CP048280.1|WP_012756242.1|603299_603791_+|F0F1-ATP-synthase-subunit-B
MEFAFDATFFAFVGLVLFLALVVYLKVPGMMARSLDDRADQIRNELAEAKRLREEAQHLLAEYQRKRKEAEAEAAHIVAAAEREAEMLTAEAKKKTEEFVANRTALSEQKIKQAEVEAMKAVRSAAVDLAIAAAETVLAKRADTKIQSELFGNAVGQVKTRLN
>NZ_CP048280.1|WP_020048679.1|604319_605009_-|ribonuclease-HII
MKPRTSPDSPLLFDTVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGLDVPPGLDCPGQAVVKGDARSVSIAAASIVAKVTRDRMMARAHSVFPDYGFAAHVGYGTAQHRAGIERHGPCSLHRMSFRPLRKTEDDSETDELLSE
>NZ_CP048280.1|WP_020048680.1|605283_606441_-|PA0069-family-radical-SAM-protein
MREQSLAGQAAFAPANTADIADAMIVSSGLRVEVDRRRGRGAGLNPTGRFEPLQRETVDDGWQTWEELPPFKTEVQVEKPRTAITRNESPDLSFDRSINPYRGCEHGCIYCFARPTHAYMGLSAGLDFETKLFAKPDAAKLLERELAKPGYKVRVIAIGTNTDPYQPIEKEWRIMRGILEVLNKANHPVSIVTKSAMILRDLDILQEMAAKNLVRVGISVTTLDRKLARTMEPRAATPPRRLETIHTLAEAGIQTAVMAAPLIPALNDHELERILESAKAAGAAEASYVILRLPLEVSPLFRDWLLQHYPDRYRHVMSLVRSMRGGKDYDAEFGKRMKGAGPYAWQIARRFEMAARRFDLTRRSVPLRDDLFVPPDGSGVQLSLL

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Crispr_ID: NZ_CP048280_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048280_2

1066190-1066303

Orphan

Consensus_repeat	Method
CGAACGCCCGGAGCGCAAGCGCAGGGCCGGGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048280_2

>merge|NZ_CP048280|2|1066190-1066303|CRISPRCasFinder
CGAACGCCCGGAGCGCAAGCGCAGGGCCGGGGCGGTTCGGCGCAGCCGAAGCAATCGATCCAGTGAATCGATTGCAGCTGCGAACGCCCGGAGCGCAAGCGCAGGGCCGGGGCG

>NZ_CP048280|2|2|1066190-1066303|CRISPRCasFinder
CGAACGCCCGGAGCGCAAGCGCAGGGCCGGGGCG	GTTCGGCGCAGCCGAAGCAATCGATCCAGTGAATCGATTGCAGCTG
CGAACGCCCGGAGCGCAAGCGCAGGGCCGGGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048280.1\|WP_020049127.1\|1062703_1063522_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP048280.1\|WP_026265076.1\|1059681_1060188_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223718
NZ_CP048280.1\|WP_020049125.1\|1061816_1062284_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP048280.1\|WP_020049132.1\|1068945_1070565_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP048280.1\|WP_020049133.1\|1070595_1071801_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP048280.1\|WP_020049120.1\|1055524_1055890_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_020049129.1\|1065243_1066131_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237362
NZ_CP048280.1\|WP_020049134.1\|1071950_1072784_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NZ_CP048280.1\|WP_020049135.1\|1072826_1073510_-\|glutathione-transferase-GstA	unknown	unknown	gnl\|CDD\|182533
NZ_CP048280.1\|WP_020049136.1\|1073626_1074247_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP048280.1\|WP_155247480.1\|1064989_1065322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_020049122.1\|1059137_1059608_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP048280.1\|WP_020049130.1\|1066549_1067452_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP048280.1\|WP_020049128.1\|1063851_1064895_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176221
NZ_CP048280.1\|WP_020049139.1\|1076359_1077091_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP048280.1\|WP_020049137.1\|1074344_1075583_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_CP048280.1\|WP_020049121.1\|1056294_1058676_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP048280.1\|WP_026265077.1\|1067590_1068847_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP048280.1\|WP_026265081.1\|1075983_1076328_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP048280.1\|WP_155247479.1\|1060293_1061811_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238008

Protein	Function_ID	Function_description	E-value
NZ_CP048280.1\|WP_020049127.1\|1062703_1063522_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.40366e-19
NZ_CP048280.1\|WP_026265076.1\|1059681_1060188_+\|AAA-family-ATPase	gnl\|CDD\|223718	COG0645, COG0645, Predicted kinase [General function prediction only].	2.03077e-18
NZ_CP048280.1\|WP_020049125.1\|1061816_1062284_-\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	4.37734e-10
NZ_CP048280.1\|WP_020049132.1\|1068945_1070565_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.17231e-101
NZ_CP048280.1\|WP_020049133.1\|1070595_1071801_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	7.14025e-43
NZ_CP048280.1\|WP_020049129.1\|1065243_1066131_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237362	PRK13356, PRK13356, branched-chain amino acid aminotransferase.	0
NZ_CP048280.1\|WP_020049135.1\|1072826_1073510_-\|glutathione-transferase-GstA	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	6.03695e-75
NZ_CP048280.1\|WP_020049136.1\|1073626_1074247_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.95951e-09
NZ_CP048280.1\|WP_020049134.1\|1071950_1072784_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	1.86582e-159
NZ_CP048280.1\|WP_020049122.1\|1059137_1059608_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.94473e-12
NZ_CP048280.1\|WP_020049130.1\|1066549_1067452_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.79702e-80
NZ_CP048280.1\|WP_020049128.1\|1063851_1064895_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176221	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP048280.1\|WP_020049139.1\|1076359_1077091_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.63979e-26
NZ_CP048280.1\|WP_020049137.1\|1074344_1075583_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.32969e-149
NZ_CP048280.1\|WP_020049121.1\|1056294_1058676_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.38108e-75
NZ_CP048280.1\|WP_026265077.1\|1067590_1068847_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	9.99389e-107
NZ_CP048280.1\|WP_026265081.1\|1075983_1076328_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.61503e-06
NZ_CP048280.1\|WP_155247479.1\|1060293_1061811_+\|hypothetical-protein	gnl\|CDD\|238008	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.	9.00393e-07

>NZ_CP048280.1|WP_020049129.1|1065243_1066131_+|branched-chain-amino-acid-aminotransferase
MAVDTSPRSTTWTHVDGEWLPGNPPLIGPTSHAMWLGSTVFDGARWFDGIAPDLDLHCQRINRSALAMGLKPVKSAEEIVALAWEGVAKFDGATPIYIKPMYWGEHGSPGSVVSVDGESTRFALCLFEAPMGGHGGTSLTVSPYRRPSPETAMTEAKTGSLYPNSGRMIAEARSRGFDNALVRDLNGNVVETASSNVFMVRDGVVMTPAANRTFLAGITRSRVIGLLRKAGFDVHEATLSVEDFMQADEIFTTGNYSKVVGVIRLDDRDLQEGPVTRKALELYMDWAFGRSESEE
>NZ_CP048280.1|WP_155247480.1|1064989_1065322_+|hypothetical-protein
MDQVDATLLSGGSTHHRMRQAAIPTFHSIIFADAPIDEAAIAAHEYCGLAPFLGIFLLPCFRSGFVLDPACRGGFSFSGFRRKPSWPSIHHPVQPLGLMSTGSGSPAIRR
>NZ_CP048280.1|WP_020049128.1|1063851_1064895_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAMFYEAFEQAPEIRTVADPTPAEDGVVISVGASGLCRSDWHGWMGHDPDIRLPHVPGHELAGRIVATGRGVMRFKVGDRVTVPFVSGCGHCGECHSGNQQVCPNQFQPGFTHWGSFAEYVAIDYADTNLVHLPDTIDDATAASLGCRFATSFRAVADQARTGPGEWIAVHGCGGVGLSAIMIATALGANAIGIDISEEKLAFARECGAVATVNASGVADVAEAVREITKGGAHVSIDALGHPVTCFNSIKNLRRRGRHVQVGLMLGEHATPQIPMAQVIGHELEIYGSHGMQAWRYDAMLAMLSAGKIAPQKLIGRRISLEEAVPALMALDKAEATGISVITRFS
>NZ_CP048280.1|WP_020049127.1|1062703_1063522_+|sugar-phosphate-isomerase/epimerase
MSSLPVVGAAMTLDEVELHRDWLFEKSRDLELQSFIDAEVLNGDWAPLAARARRLLDGHGGRLGIHGPFWGFTIASEDPDIRAIVTKRLLQGLDVCAAIGATHMVIHSPYTSWSYNNLDDNAGAREALAERTHMTLRDAVSRAEDIGCTMVIENIEDKDPHIRVALAESFNSPAVAVSIDTGHAHYAHGYTGAPPVDYYVKAAGNRLQHVHLQDADGYADRHWSLGEGTIRWHAVFAALAKLESNPRLIIEIKDKSKIPASAAYLASIGVAE
>NZ_CP048280.1|WP_020049125.1|1061816_1062284_-|cupin-domain-containing-protein
MMSNSFVKMPASDEAKRFFVLGDRVERRLRISGTWLNIFDVTVPSGSRTPKHAHASPEVFRIIEGNLTIWRLSDSGPEEIEASAGDIVTIPPFMVHGYSNRGTIPVVFSAVVDRDMAEFIEAEGTTEPPKVSPSAETIARMTAAANAYGITILAA
>NZ_CP048280.1|WP_155247479.1|1060293_1061811_+|hypothetical-protein
MRVALRATVSGICIAGLFTCLATPSEAQELPNGWRPAPALRQGMTSFPESYIAQLFQPFRASAGPDRVLKQEDIERLKQIAAARQRASGVTTFFSSDLDGDGRLTLAEFKDAQEQSWYETSIDISSELGKRFAKLDLDGDGTVTLEEAKAAAEKLGQAESGRDVAGRLQQLLAVDPNQDGTLTAAELEQLGRAAFAYYDRDKDGVLSKAERTAVSAENSQDDEILRRKQEVARCMFPRAAGQEDVFFVNAYGVGALSSVSLVGQDEVTETAEIVVEPGETPLYIVALARSPTIWRVTGDAKRVTRFVAMSPAKAAGVTGLPKDTVTLLPGTNCISNRLTDRPSAAQATAVAFEDAIGSLVRGMIDSPRVSMKLPSDATAPEKMPARRTAVLPPPMPPRWDEDPLKSLRSRRPGGLVEIDAASVVASADVTPYEVPPLEFGLMKLLQDGSIEAKGRQFYTIRKPIARLPAGLGKGNFYIFDLAPGIEPPSNLFNRPRLPPLPTLRP
>NZ_CP048280.1|WP_026265076.1|1059681_1060188_+|AAA-family-ATPase
MLIIFGGLPGSGKTTIARALAERLNAVHVRVDTIEQAIRASGIADDAGPAGYIAAYGIAGDNLTLGRTVIADSVNPLRITRSAWLSVAQAAGVAAAEVEVVCSDKAEHRKRAETRLTDVEGLVKPTWQEISERAYDEWHDAIVIDTASKTVDAALDELVSRLKSLAMR
>NZ_CP048280.1|WP_020049122.1|1059137_1059608_+|GNAT-family-N-acetyltransferase
MNEPRFPNDEGEDAWMVVQVSADEHWNAYHDIRRAVLFEARGLIGYDANHPDDRRDRHFPLLLLLENTPVGAARLDLMDDAAACVRTVAIRAECQGKGYGRMLMAGLEKFASQHGVKRLLVNAARDAVGFYGALGWTVVEAGGENPVLTKELRTGP
>NZ_CP048280.1|WP_020049121.1|1056294_1058676_+|methyl-accepting-chemotaxis-protein
MQFKSATGRNIFSVAACGVIATIAASGVLFYIADNDMRKSSLDEMLQIAAANALNVEKSMSVALGIVNALETSLSTMKDGGNANRAAADALLKNMLQDNPMALGVWTGWEPNAFDGKDKDYVGKEGHDTTGRYVPYWVRSGDKIQHTPLVDYAVSGAGDYYQLPFTQKKAVVVEPYVYAVDGKDVLMTSVAKPIMVEGKALGVAGMDISLDDANKAISAVHPMETGYLSLVTGAGSIISHPSAGLAGKNIKDGGDLTAGWDQLIAKPGVAQEIAGRDGQTYFSVAYPVKLTTDLNWYAVVSVPKSTVFAQLNNMAWSAVAITAIAALLLGLSGWFIARKFIRRIEGVIAETDRIAHGQLDVQLSDRRAKDEIGDLSRSLGILLESNRQKIKLEADAETSRAREEIERQERSVHHAAREDSIKFAVSELGNGLAGLSNGDMTVRLEKPFADSLDEIRVDFNASVEKLQAALISFSENAAVIQAGSEEIRSGADDLARRTEQQAASVEETAAALEQITTSVKDSTLRAEEAGALVSRTKEGAEKSGEVVRNAVDAMTGIEQSSQSISNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSATAAKEIKALITSSGDQVKRGVDLVGQTGKALQAIVAEVQQINSNVQAVVQAAREQSTGLLEINTAVNQMDQSTQKNAAMVEESNAASHTLVTEVSALSERLAQFNLGQAANAAPAARTTARPLARPVAATLAARRPVPASATDHARPAPSPARALGGKLAAAFGTSAAPASTEGNWEEF
>NZ_CP048280.1|WP_020049120.1|1055524_1055890_-|hypothetical-protein
MLHATIKFAPSNITALKTALRKQYANIRSSHADEALAASFGFRSYAAMLSVLRQVSGSARLMVQTDPGLLLLRLEQLGYSGLSLQTLRRLTWEVPYPDRWQDDELEQSLKGRFAPVAANSE
>NZ_CP048280.1|WP_020049130.1|1066549_1067452_-|LysR-family-transcriptional-regulator
MDRLTSLMVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTETGKYYYERSSQILAELDEADRTAGALSTAPRGTLKVYTSSAIVRFLLPVVSEFMELYPSISLDFSVGERMVDMIEDGYDLVMRTVLPPDSSLVARKLTPWRHMLVCSPAYFESHPMPKTPAEVADHNCLQYAYYPYGDEWRFEDGDGKMKSVKISGNVVSNSAEMLRFLTLAGRGIFLAPSFVVFDDIAEGRLVKIMPDYRPVEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKWMT
>NZ_CP048280.1|WP_026265077.1|1067590_1068847_+|HlyD-family-secretion-protein
MVELPRRDVFESAREAEQILAEEAARAPAAEAPSMPVSEAPVTEASVTGAPKKTGRRIVKRAVLAAALLAGVAFAGDFGYRYWTVGRFIESTDDAYVKADYTTVAPKVAGYISQVLVNDNDMVKAGQVLARIDDRDFQAALSQARADVKAAEAAITNIDAQIALQQSVIEQAKATIDASQASLDFAVSDAARSARLITNGAGTQSRAEQTQSARDQAAAAVERDRAALVTAQNKVPVLQTEREQTVAQRDRAAAAAQQAELNLSYTDIVAAVDGTVGARSIRVGQYVTSGTQLMAVVPLHSVYVVANFKETQLTYISPGQSVEIKVDSFPDISIKGHVDSVSPASGLEFSLLPPDNATGNFTKIVQRIPVKIVIDDEALSGLLRSGMSVEPEIDTKAAQTHAAQTSGAAKEGSSNPAG
>NZ_CP048280.1|WP_020049132.1|1068945_1070565_+|multidrug-efflux-MFS-transporter
MATLQIAANSNGLAPPAAAAPATPAAMSPLRMWAAVVGSTLGAFMAVLNIQIVNASLADIQGAIGAGTDDGGWISTSYLIAEIVVIPLSAWLARVFSLRNYLLANAILFLIFSVACAFAANLQQMIVLRAIQGFSGGVLIPMAFTIIITLLPKAKQPVGLALFALSATFAPAIGPTIGGYLTENWGWEHIFYVNLVPGTLMVGLLWASLDRAPMNLKLLAKGDWPGIVTMAIGLAALQTVLEEGNKEDWFGSDFIVRLSVIAAVSLTLFLIIELKTANPLLNLRLLVRRNFGFGIVANFLLGIALYGSVFVLPIYLARIQGYNSEQIGMVLAWTGIPQLLLIPLVPRLMKHFDVRLLIIVGFALFAASNFMNVHMTGDYAGDQLFWPNIVRAIGQALVFTPLSAIATSGIEQENAGSASALFNMMRNLGGAVGIASLQTFLSKREQFHSNILTNSVSVFEEATRERIARLTGYFMSHGVSDQALAGHKAVVAIALKIRKQANIMAFSDTFFLLGVALVVALLATLLLRKPGQLSGGGAH
>NZ_CP048280.1|WP_020049133.1|1070595_1071801_+|adenylate/guanylate-cyclase-domain-containing-protein
MTSAIYAPDADRLQPKAAGHAVSIGALLSIIEWLSGDECHALDEAGLVSGLGRRLQALGLPVDRLTLHLMTLHPEFIGRTIAWAPGEPIEIHDREHGARVAIANTPLRKVMETREPLVVDTRESVHGRWQHIDVFADRGLMQLVIAPLCNVDGPVSAAVFGTRRPGGFTAPERQVIERILPALRNTSELRILRQVELSLLDTYIGPLTASRILAGRIRRDEIESMEAALLLCDLRGFTELSNRLPGHTVLGLLNAYFDRIVPAITREGGEVLKFMGDAVLAFFPGYDAAHSCGAALASARAILDEIDHFQYEGIGVKAGIALHYGEVSYGNVGSGRRLDFTLIGGDVNLVSRIQTACSELGEALLMSAPFRDEAGAGDVVSVGAHRLKGFADPVELFTIVR
>NZ_CP048280.1|WP_020049134.1|1071950_1072784_+|ammonia-dependent-NAD(+)-synthetase
MTVLFDEQGEIIRELGVAADIDPEREIERRTAFLKDYLVASGMRGYVLGISGGVDSLTAALLAQKAVRELRESGHAAEFIAVRLPYAVQADEADAVKALETIGADRSMVVNIKAPADAMLAAAQDGGLAFADAGRQDFILGNIKARQRMIAQFALAGALGSLVIGTDHAAEAVMGFFTKFGDGAADILPLAGLNKRRVRLLAKRLGAPDELVFKVPTADLEDQRPLRPDEEAYGVSYDEIDDFLEGKPVGEIARRRILAAYRATAHKRALPVAVNAL
>NZ_CP048280.1|WP_020049135.1|1072826_1073510_-|glutathione-transferase-GstA
MKLYMHAAACSLSPHIICRELGLDIELVQVDRQTHRTSNGEDYLAINGNGYVPALMLDDGKVLTEGPAIVQFLADSVPEGAALLPEVGNIRRNEVQSYLNFITAELHKPMVLLFNPIYSSVHGEVRALISKRLTWLNGRLAGPYLTGDTFTVADAYLFVCLNWSPWTDIDLKQWPALHGFMARVAARPKVREALQAEDLEAFDADGVYFAPHAYLASSGRTGEPVRP
>NZ_CP048280.1|WP_020049136.1|1073626_1074247_+|TetR/AcrR-family-transcriptional-regulator
MKDEKKRGRPRAFDAKAALGKARDVFWDRGFAAASLDNLSAATNLNRPSLYGAFGDKEDLYLDTLEGYRQDGMNTLAEALDPSLPLRDNIARVYAGALAIYLHGETAARGCLLIGTASAEAVQHERVREVLGRSLNDFDDEIEKRMRLGVERGELPESADPQMLARLASAVMHSLAVRARAGDSRETLEAIARSGVELICGSANNP
>NZ_CP048280.1|WP_020049137.1|1074344_1075583_-|multidrug-efflux-MFS-transporter
MTDTQWDASARPGSIYWKRNLTISLIGSFTTIVAMTLLLPFLPLYVEELGVSDHADIVQWSGIAYGATFFAAALVAPLWGRLGDIYGRKLMLVRASLGMTLAISLMGMAGNVWQLVALRLFVGLAGGYASGSMVLVATQTPKDRSAWALGVLSSGIMAGNLVGPLIGGALPPIIGIRGTFLAAGGMIFLAFLATALLIKEEKSPARKKAAKASGGWKSIADKRPVIAMLATGMLLMFANMSIEPIITVYVAQLVPVESQVTMISGVVMSAAALGSILSASWLGKLADRIGHWPVIAGALAVAGLLLIPQAFVTSAWQLIILRFLMGAALGGLLPCIAAVIRHSVPDSAAGSILGLSISSQYVGQVAGPILGGFIGGHIGMRAVFLGTSVLLVAGAAYAWIVRPRDAETRGST
>NZ_CP048280.1|WP_026265081.1|1075983_1076328_+|nuclear-transport-factor-2-family-protein
MSDMRTSREQTVRHLYGAYLDDRKDIVGTMLTEDFTFSSPRDDHIDRATYFERCWPKEPVFRGFDIEFLAIDGDEAVVRYRAEKRDGGSFRNIESLRFRGDKIASVDVYFGRNL
>NZ_CP048280.1|WP_020049139.1|1076359_1077091_-|sulfite-exporter-TauE/SafE-family-protein
MTSDFFFFIVVGFCAQVVDGALGMAFGVLSTTSLLAFGVPAANASAMTHVAEMFTTAASGISHAYHRNVDWRLVARLAPAGMIGGAIGAYLLSNIDGKAIEPFVSAYLIAIGLVILYKAFRPPPKRDVRDWMVPPVGLCGGVLDAIGGGGWGPIVTSSLVSRGHDLKRVIGSTSFTEFAVTLTISLTFILTLGWSELDSAIGLIIGGVIAAPFGAILVKRLPVRPLMVAVSMIIIGTSAMRLL

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Crispr_ID: NZ_CP048280_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048280_3

1757698-1757789

Orphan

Consensus_repeat	Method
AAGAAGGCCGCACCGAAGAAGAAGGCTGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP048280_3

>merge|NZ_CP048280|3|1757698-1757789|CRISPRCasFinder
AAGAAGGCCGCACCGAAGAAGAAGGCTGCCGCCAAGGCCGAAGCAGCTGACGCCGGTGAAGGCGAAGAAGCCGCACCGAAGAAGAAGGCTGC

>NZ_CP048280|3|3|1757698-1757789|CRISPRCasFinder
AAGAAGGCCGCACCGAAGAAGAAGGCTGC	CGCCAAGGCCGAAGCAGCTGACGCCGGTGAAGGC
GAAGAAGCCGCACCGAAGAAGAAGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048280.1\|WP_020049707.1\|1758552_1760322_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|214792
NZ_CP048280.1\|WP_020049703.1\|1754212_1755316_+\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|227209
NZ_CP048280.1\|WP_003539006.1\|1746415_1746763_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|224775
NZ_CP048280.1\|WP_020049706.1\|1758003_1758426_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226158
NZ_CP048280.1\|WP_003539009.1\|1749353_1749740_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226260
NZ_CP048280.1\|WP_020049701.1\|1751228_1752662_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	unknown	unknown	gnl\|CDD\|235416
NZ_CP048280.1\|WP_020049710.1\|1763864_1764329_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176909
NZ_CP048280.1\|WP_020049711.1\|1764331_1764676_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
NZ_CP048280.1\|WP_020049713.1\|1766139_1766967_-\|JAB-domain-containing-protein	unknown	unknown	gnl\|CDD\|178801
NZ_CP048280.1\|WP_003539017.1\|1752755_1752899_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP048280.1\|WP_020049714.1\|1766974_1767811_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP048280.1\|WP_020049698.1\|1746808_1749349_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237805
NZ_CP048280.1\|WP_026265215.1\|1760481_1761285_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|197317
NZ_CP048280.1\|WP_020049699.1\|1749742_1750600_+\|phytoene/squalene-synthase-family-protein	unknown	unknown	gnl\|CDD\|224478
NZ_CP048280.1\|WP_003539019.1\|1753194_1753341_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NZ_CP048280.1\|WP_020049712.1\|1764751_1765939_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP048280.1\|WP_020049700.1\|1750671_1751139_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_026265217.1\|1762196_1763603_-\|Si-specific-NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|235373
NZ_CP048280.1\|WP_020049704.1\|1755312_1755903_+\|GDYXXLXY-domain-containing-protein	unknown	unknown	gnl\|CDD\|379571
NZ_CP048280.1\|WP_155247489.1\|1761422_1762183_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129

Protein	Function_ID	Function_description	E-value
NZ_CP048280.1\|WP_020049703.1\|1754212_1755316_+\|DUF2157-domain-containing-protein	gnl\|CDD\|227209	COG4872, COG4872, Predicted membrane protein [Function unknown].	1.57678e-45
NZ_CP048280.1\|WP_003539006.1\|1746415_1746763_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|224775	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion].	1.38952e-31
NZ_CP048280.1\|WP_020049706.1\|1758003_1758426_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|226158	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only].	5.83825e-08
NZ_CP048280.1\|WP_003539009.1\|1749353_1749740_+\|membrane-protein	gnl\|CDD\|226260	COG3737, COG3737, Uncharacterized conserved protein [Function unknown].	5.48545e-60
NZ_CP048280.1\|WP_020049701.1\|1751228_1752662_-\|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO	gnl\|CDD\|235416	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed.	0
NZ_CP048280.1\|WP_020049710.1\|1763864_1764329_-\|hypothetical-protein	gnl\|CDD\|176909	cd08900, SRPBCC_CalC_Aha1-like_7, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	3.63416e-34
NZ_CP048280.1\|WP_020049711.1\|1764331_1764676_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	1.64406e-11
NZ_CP048280.1\|WP_020049713.1\|1766139_1766967_-\|JAB-domain-containing-protein	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.35174e-107
NZ_CP048280.1\|WP_003539017.1\|1752755_1752899_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	1.01998e-10
NZ_CP048280.1\|WP_020049714.1\|1766974_1767811_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.19482e-162
NZ_CP048280.1\|WP_020049698.1\|1746808_1749349_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237805	PRK14726, PRK14726, protein translocase subunit SecDF.	0
NZ_CP048280.1\|WP_026265215.1\|1760481_1761285_-\|metal-dependent-hydrolase	gnl\|CDD\|197317	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds. Their substrates range from nucleic acids to phospholipids and perhaps, proteins.	3.98396e-13
NZ_CP048280.1\|WP_020049699.1\|1749742_1750600_+\|phytoene/squalene-synthase-family-protein	gnl\|CDD\|224478	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism].	4.79034e-58
NZ_CP048280.1\|WP_003539019.1\|1753194_1753341_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	2.31468e-08
NZ_CP048280.1\|WP_020049712.1\|1764751_1765939_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	2.73081e-156
NZ_CP048280.1\|WP_020049707.1\|1758552_1760322_-\|radical-SAM-protein	gnl\|CDD\|214792	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.	9.27712e-21
NZ_CP048280.1\|WP_026265217.1\|1762196_1763603_-\|Si-specific-NAD(P)(+)-transhydrogenase	gnl\|CDD\|235373	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase.	0
NZ_CP048280.1\|WP_020049704.1\|1755312_1755903_+\|GDYXXLXY-domain-containing-protein	gnl\|CDD\|379571	pfam14345, GDYXXLXY, GDYXXLXY protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 171 and 199 amino acids in length. It contains a conserved GDYXXLXY motif.	4.78e-44
NZ_CP048280.1\|WP_155247489.1\|1761422_1762183_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.5344e-28

>NZ_CP048280.1|WP_020049704.1|1755312_1755903_+|GDYXXLXY-domain-containing-protein
MNSFIAKLQSGKGYLLSAVIVAGLQTLILGTIIQSRASILSNGAEVLLKTAPVDPRDFLRGDYVVLNYDISSVPVQTVSGGIPAEAGERVLWVRLKKQEDGFWTVTESSFRELPPQPETVILRSQPFYSGGLAAGDSMRVEYGIERYYVPEGEGKPIEEARNDGNVAIAVRVSADGSAQIRSLLVDGKPVYDEPLY
>NZ_CP048280.1|WP_020049703.1|1754212_1755316_+|DUF2157-domain-containing-protein
MYRGRLERDLSLWVGKGLLRQETAGALLAEYDSRPASFSLGRVLMALAAVLLAAAILLVVASNWEAIPRLVRVGGILALIWVVHLAAARMLARGATAAAGGLLVIGAMSFGGAISLVGQMYHLSGDQQTVMYLWFAIATVSAILFRSAAVTVVAGFLSWASFAVYLQDNDTHWIGLDPWMAPFMAVIVIALVRYTGAERARHLAYLLLIGWLAWLYTLYEEIAVALAFAIGGMAAFVLTALPPKPIASLVRTGGAAPAFYSFLVAVIGFLLLHIEIEDGWGLVVLGVVTLAASVLAIVLRGRDNGAVRYLAYATFAAEMLYLASVTVGSILGTSSLFLFSGLVVALVAWMVIRLERRFSANAQGERA
>NZ_CP048280.1|WP_003539019.1|1753194_1753341_-|DUF1127-domain-containing-protein
MNFSRSFNNWRKYRQTVTELGRMTNRELHDLGIDRSDIHRVAREASHR
>NZ_CP048280.1|WP_003539017.1|1752755_1752899_-|DUF1127-domain-containing-protein
MNPIRIARSWLSYRRTLNELGGLSNQTLSDIGVSRYDIRNIASRSFR
>NZ_CP048280.1|WP_020049701.1|1751228_1752662_-|methylenetetrahydrofolate--tRNA-(uracil(54)--C(5))-methyltransferase-(FADH(2)-oxidizing)-TrmFO
MNTISSYSPIHVVGGGLAGSEAAWQIANSGVPVILHEMRGVRGTDAHKTDGLAELVCSNSFRSDDATSNAVGVIHAEMRMAGSLIMAAADRCQVPAGGALAVDRDGFSEAVTKAVHDHPLITVVREEITGLPPKDWDLTIVATGPLTAPSLASAIQTETGEDSLAFFDAIAPIVYRESIDMDICWYQSRYDKVGPGGTGKDYINCPMDEAQYNAFVDALISGDTVGFKEWEGTPYFDGCLPIEVMAERGRETLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYGAQADIFRMIPGLENAEFARLGGLHRNTYINSPTLLDPSLTLKSRPGLRFAGQITGCEGYVESASVGLMAGRFAAAERKGEAISLPPATTALGSLLGHITGGHLVTDEEPGKRSFQPMNINFGLFPELQPGSIVKPEGVKRFRGKDKTIMKRQLIARRALADCATWLGQESTLAESA
>NZ_CP048280.1|WP_020049700.1|1750671_1751139_+|hypothetical-protein
MGIIVWCVLFAIVIFFAFVATRMAAQNKEDGLHDTGLAIIEFGRAFPNEAIRQLQATENGQAVFVRLHDNKAGFMRNMSRHFSCHVIEPGRVRVVGSETGRGLVIDFLDAPHHNGDFEFASAKEASEVSLWLLGNYIAEPDKDLPAGNISAANKQ
>NZ_CP048280.1|WP_020049699.1|1749742_1750600_+|phytoene/squalene-synthase-family-protein
MTEAHIATNQEICLAMLRDSDRDRYLACLLSPEEKRGALAALYAFNAELARIRDLVHEPLPGEVRLQYWHDLLEGSAHGSTAANPVAAALLIAIETHRLPRKTLIDMIEARTFDLYDDPMETRLSLEGYAGETASALIQLASLVLSPEEAARSADAAGHAGVAQAVAGLLLLMPLHRRRGQIYIPLQILSATGLDRDAFLAGEDRPSISAAIEAFAGLGREHLAKARAAGPIAPAVFPAFLPATLAEPVLVKAQKRGALLLDRPLQPPQWRRQLRMGLAAARRKI
>NZ_CP048280.1|WP_003539009.1|1749353_1749740_+|membrane-protein
MAKGIEIRAAHFPGRAPIDAYGNGGFRFADMSHRGSILCLPSGIHGWDMDMSKPLSPENFRRVLDEAADIEVLLVGTGTELRRLPEELRLALKSRGISSDPMSTGAAVRTFNIMLAEQRAVAAALIAV
>NZ_CP048280.1|WP_020049698.1|1746808_1749349_+|protein-translocase-subunit-SecDF
MLHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKVERSDIVRDRLEEVVANVRNALRGAGIRYTGLTGNDQTVTVRITDAAQTQAAVDLLKPLTTAGGHSGPEVALQQGDQGQLSLQISDAGITADVASARTRSLDIVGRRIAGLGNDNFLVRPDGADRIVVQVLGSIDAERLKNILNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYSLDDPPVPYLVDRTAFITGSNMVDIEPVVDQQTQDTSIAYRLDAEGTQRLAQATGQNIGKHLAIVFDDQVMSSPVIDAAITGGEGRISANFSEDGVRDLAIMLRAGALPATLTSVEERSISPRFGADSIFNGLVAGLVAVVLVAALMIALYRILGLIAVASLFLNLILIVAVLSLAGATLTLPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFATIVDANVTIFIAAIILFFLGSESIRGFAVTLAIGILTTVFTAFTLTRSIVAVWLRRRHPRHLPKSVLTHLFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGIDFTGGSLIEVTAKQGNADIADLNARLNDLNLGEISVERTGGPSNARIRIASQGGGENAEQSAATLVRGELQEDYDFRRVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYKKMPLPILIDASINQTLSRTVLTAATTLIALLALFLFGGEVIRSFTFAMLFGVALGTFSSIYIAAPVLIVFRLRPEAPDGEESNKTDAGVKSGTVV
>NZ_CP048280.1|WP_003539006.1|1746415_1746763_+|preprotein-translocase-subunit-YajC
MFITPAFAQSATDTATGFGGSGFEMIILFVPLMVVWYFLLIRPQRAQAKKREETLKAIRRGDQVVTGGGLVGKVTKVIDEKEVEVEIADGVRVRIVRSGISEIRVKGEPVKADAA
>NZ_CP048280.1|WP_020049706.1|1758003_1758426_+|SnoaL-like-domain-containing-protein
MTAKQDMKKLVEEIYAVRDRGDIEATLALIGENCTFRMVGNTRLAPFSTESSGHAFRQAITQLITVWDLSNIRTAGIYVDEDEHMVFAHREGVVRHIPSGVSFHTEFVDKIHFRDGKPVKIIEFVDTLQVAETTQMIQVA
>NZ_CP048280.1|WP_020049707.1|1758552_1760322_-|radical-SAM-protein
MSHVLEAARRRFQLILIKPSHYDDDGYVIRWWRAMIPSNSLAALYGIAAECAERKVLGDDTAIDITVIDETNTRIDIAGLLAQFKRHDNFGMISLVGVQTNQYPRALDIARPFRDAGLPVSIGGFHVSGCLSMLDGKAVGLDACRDMGISMFAGEAEGRLDMVLRDAAAGELKPLYNFMNDLPGIGGTPVPFLPKDNIQRTLGLSTSFDAGRGCPYQCSFCTIINVQGRKSRFRSADDVEKLVRMNWAQGIHKFFITDDNFARNKDWEAIFDRLIELKERDGIPLGLMIQVDTLCHKIPNFIEKSRRAGVTRVFIGLENVNPDNLTAAKKNQNKITEYRKMLLAWKAQGIMTLAGYILGFPADTPESIRRDITIIQEELPLDVIEFFILTPLPGSEDHQVLWKKGIEMDADLNIYDVEHVCTAHPKMSKQEWEDIYHEAWSLYYSPDHMKTLLRRAVATGVPLARLVKVLVSFATTVPLENVHPLQSGLLRLKTPSERRPDLPRENPLVFWPRFAWETFRKHASLAGTIIGLTISAFLISRDAKSKTYMDQALTPVADDEEETLHLFTQTAGGAAAVSHVRKVAQLTAH
>NZ_CP048280.1|WP_026265215.1|1760481_1761285_-|metal-dependent-hydrolase
MRIISLNAWGGRLHEALIEYVTAADPDVLCLQEVLRAPGTGTGWSVYRDDDVELPQRFNLFAEISTALPGHDGFFCPTSRGELFDGDTAIVAEFGLATFVRKTHSVIAQGLNFVHGRFSADGWGEHPRPRNAHCIRLFCHERASTVTIAHMHGLRDPAGKGDTAARDEQAAALVRLIEGVWPGDEGLVVCGDFNVLPDSATFAILARLGLSDLVTGSGLVDTRTSYYLKQGRFADYMLVTPGMKVAKFEVVEAPEVSDHRALLLDIG
>NZ_CP048280.1|WP_155247489.1|1761422_1762183_+|IS5-family-transposase
MGVLDRLVLRDEQWERIAPHIIGDERTRGSSGRDNRMFVEAVLWIVRTGSPWRDLPEVFGEWNSVFRRFSRWSQKGIWWRMFAAMSDDPDFEYLIVDSTIIRAHQHAAGGKKGAEDQALGRSRGGLSTKIHMVVRGLGCPVRFTLTAGQKGDAPQADALIEGLPAKVVMGDTAYDSDRLRAEIAGKGAVAVIPNNPSRAKKYPLDKDLYAQRHLIECCFSKLKQFRRVATRFEKTARNYQAVVTIAATMLWLR
>NZ_CP048280.1|WP_026265217.1|1762196_1763603_-|Si-specific-NAD(P)(+)-transhydrogenase
MLQYDLVVVGSGPAGRRGAIQAAKLGKKVLVIEQGKRVGGVSVHTGTIPSKTLRETALNLSGWRERGFYGRSYRVKEEISADDLRRRLLITLNHEVEVLEHQFARNRVQHIRGKASFIDASTLQVIKDDGETTQVTAASVLLAVGTKPFRPNYMPFDGKTVLDSDELLDIQDLPRSMVVIGAGVIGIEYATIFSALDTAVTVIDPKATMLDFIDKEIIEDFTYQLRDRNMKLLLGQKADKVERLENGKVGLTLDSGRRLTTDMVLFAAGRMGATDALNLQAIGLEADSRGRLKVNPETFQTSVANVYAAGDVVGFPSLASTSMEQGRIAARVAVGAVAKEPPKYFPYGIYAVPEISTCGLTEEEMKERGIPYECGIARFRETSRGHIMGLDTGLLKLIFSLKTRRLLGVHIVGEGATELVHIGQAVLNLKGTVEYFVENTFNYPTLAEAYKIAGLDAWNRMGDIKSEL
>NZ_CP048280.1|WP_020049710.1|1763864_1764329_-|hypothetical-protein
MHEFETMAFGALTESRRINADRGLVYDAWTLLEHRRHWFAGPGWTEIARSLDLRVGGHEVAHGRFPDGTETIYKARFHLIEPHKRLIYAFDMSVAGEPFSISLAGVEFSEDSGTTVLTYTEQAFFLAGDYDAESRRHGTNFLLEQFEVHVSRQS
>NZ_CP048280.1|WP_020049711.1|1764331_1764676_-|helix-turn-helix-transcriptional-regulator
MEHYNPALDRAFHALADPTRRAVVARLARCQTATVRELANPFPMGLPAFLKHLRVLEDSGLISSVKSGRVRTCSIRPQQLADAEQWFSDRRKHLASQLDRLANYVESLERNKEK
>NZ_CP048280.1|WP_020049712.1|1764751_1765939_-|alpha-hydroxy-acid-oxidizing-protein
MTIRSGNTDRSTRLCRDVLCLDDFEIKAQRHLPKPLFGYIAGATETNASLRHNAEAFQAYAFRPRVLRDVSKRSTETSLFGKTHAAPFGIAPMGISALMAYRGDIVLAQGADQSGIPMIISGSSLIPLEEIAAVSPQAWFQAYLPGEPDRIDALIDRVGAAGLRTLLLTVDTATLPNRENNVRAGFSTPLRPGLRLAWQGISHPRWTTGTLLRTIVRHGIPHFENSYATRGAPIISSNVTRDFGRRDHLNWNHLERIRNRWSDKLVVKGIMHPDDAARAVDTGADGVIVSNHGGRQLDGTASPLQVLPEIASRVGDSVAVMVDGGFRRGTDIIKALALGACFVFVGRPFLYAAAVAGLPGVLKAADILKTELHSNMALLGVTKVGDISADYITRA
>NZ_CP048280.1|WP_020049713.1|1766139_1766967_-|JAB-domain-containing-protein
MAKGPVSTSSDDELPFPTQESLAADERSFFGGRPQKPSAPNARTALPASLAGQEHYHGHRERLRDRFRELGDTALADYEILELLLFRLIPRRDTKPIAKALIERFGSLSGVFGAPQALLMEVKGVGETVALDLKLISTVAHRTLKSELRSKQVLSSWSSVIQYCHAAMAHETREQFRILFLDKRNVLIADEVQGRGTVDHTPVYPREVVKRALELSATAMILVHNHPSGDPTPSRADIDMTKVIIDAAKALDITVHDHVIIGKDGHVSLKGLKVI
>NZ_CP048280.1|WP_020049714.1|1766974_1767811_-|type-I-methionyl-aminopeptidase
MVNYIEASTAPPKNTGAIRLYDAEAFEGMRKACQLTARCLDALADIVKPGLLTDEIDRFVFDFGMDHGAYPATLNYRGYTKSTCTSINHVVCHGIPNDKPLRDGDIVNIDVTFVLDGWHGDSSRMYPVGVVKRAAERLLEVTYESLMRGIAAVRPGVRTGAIGEAIQTYAEAERCSVVRDFCGHGVGRLFHDSPNILHYGRANEGPELREGMIFTIEPMINLGRPHVKVLADGWTAVTRDRSLSAQYEHTVGVTSDGCEIFTLSPGGLDRPGLPSHNG

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Crispr_ID: NZ_CP048280_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048280_4

1888484-1888570

Orphan

Consensus_repeat	Method
AGCAATTCCAGCAAAAGTGCGTAGCGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048280_4

>merge|NZ_CP048280|4|1888484-1888570|CRISPRCasFinder
AGCAATTCCAGCAAAAGTGCGTAGCGGTTTTTGCGTCCGGAATTGCGCAGAAACAAGAGCAATTCCAGCAAAAGTGTGTAGCGGTTT

>NZ_CP048280|4|4|1888484-1888570|CRISPRCasFinder
AGCAATTCCAGCAAAAGTGCGTAGCGGTTT	TTGCGTCCGGAATTGCGCAGAAACAAG
AGCAATTCCAGCAAAAGTGTGTAGCGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048280.1\|WP_020049815.1\|1888661_1889597_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293806
NZ_CP048280.1\|WP_020049824.1\|1896470_1896671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_026265231.1\|1882299_1883736_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP048280.1\|WP_011651871.1\|1883738_1884053_+\|DUF2849-domain-containing-protein	unknown	unknown	gnl\|CDD\|371340
NZ_CP048280.1\|WP_020049816.1\|1889806_1890295_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380348
NZ_CP048280.1\|WP_020049825.1\|1897636_1897840_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP048280.1\|WP_020049817.1\|1890592_1891384_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP048280.1\|WP_020049808.1\|1880577_1881423_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP048280.1\|WP_003539403.1\|1878593_1878836_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NZ_CP048280.1\|WP_003559202.1\|1891496_1892267_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235500
NZ_CP048280.1\|WP_020049811.1\|1884061_1885732_+\|nitrite/sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
NZ_CP048280.1\|WP_020049807.1\|1878913_1880239_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP048280.1\|WP_017960349.1\|1897239_1897467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_020049814.1\|1887472_1888435_-\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP048280.1\|WP_026265232.1\|1885742_1886255_+\|DUF934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226272
NZ_CP048280.1\|WP_020049820.1\|1892508_1893258_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_CP048280.1\|WP_020049822.1\|1893881_1894100_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048280.1\|WP_020049813.1\|1886293_1887505_+\|UbiH/UbiF-family-hydroxylase	unknown	unknown	gnl\|CDD\|181001
NZ_CP048280.1\|WP_020049823.1\|1894124_1896053_-\|membrane-protein	unknown	unknown	gnl\|CDD\|227903
NZ_CP048280.1\|WP_020049809.1\|1881443_1882031_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663

Protein	Function_ID	Function_description	E-value
NZ_CP048280.1\|WP_020049815.1\|1888661_1889597_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293806	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain. Pseudomonas pseudoalcaligenes OPHC2 is a thermostable organophosphorus hydrolase which a broad substrate activity spectrum: it hydrolyzes various phosphotriesters, esters, and a lactone. This subgroup also includes Pseudomonas oleovorans PoOPH which exhibits high lactonase and esterase activities, and latent PTE activity. However, double mutations His250Ile/Ile263Trp switch PoOPH into an efficient and thermostable PTE. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	9.27506e-87
NZ_CP048280.1\|WP_026265231.1\|1882299_1883736_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	7.39154e-108
NZ_CP048280.1\|WP_011651871.1\|1883738_1884053_+\|DUF2849-domain-containing-protein	gnl\|CDD\|371340	pfam11011, DUF2849, Protein of unknown function (DUF2849). This bacterial family of proteins has no known function.	4.18174e-31
NZ_CP048280.1\|WP_020049816.1\|1889806_1890295_-\|hypothetical-protein	gnl\|CDD\|380348	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to YjlB, a Bacillus subtilis protein of unknown function with a cupin beta barrel fold. The active site of members of the cupin superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two-domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation.	4.02693e-69
NZ_CP048280.1\|WP_020049825.1\|1897636_1897840_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	1.99782e-19
NZ_CP048280.1\|WP_020049817.1\|1890592_1891384_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.54806e-62
NZ_CP048280.1\|WP_020049808.1\|1880577_1881423_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.83276e-151
NZ_CP048280.1\|WP_003539403.1\|1878593_1878836_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	9.6229e-50
NZ_CP048280.1\|WP_003559202.1\|1891496_1892267_-\|glucose-1-dehydrogenase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	2.4928e-84
NZ_CP048280.1\|WP_020049811.1\|1884061_1885732_+\|nitrite/sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	0
NZ_CP048280.1\|WP_020049807.1\|1878913_1880239_+\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	5.92462e-174
NZ_CP048280.1\|WP_020049814.1\|1887472_1888435_-\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	8.3025e-55
NZ_CP048280.1\|WP_026265232.1\|1885742_1886255_+\|DUF934-domain-containing-protein	gnl\|CDD\|226272	COG3749, COG3749, Uncharacterized protein conserved in bacteria [Function unknown].	1.72307e-61
NZ_CP048280.1\|WP_020049820.1\|1892508_1893258_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	1.32079e-47
NZ_CP048280.1\|WP_020049813.1\|1886293_1887505_+\|UbiH/UbiF-family-hydroxylase	gnl\|CDD\|181001	PRK07494, PRK07494, UbiH/UbiF family hydroxylase.	0
NZ_CP048280.1\|WP_020049823.1\|1894124_1896053_-\|membrane-protein	gnl\|CDD\|227903	COG5616, COG5616, Predicted integral membrane protein [Function unknown].	7.06553e-09
NZ_CP048280.1\|WP_020049809.1\|1881443_1882031_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.47091e-34

>NZ_CP048280.1|WP_020049814.1|1887472_1888435_-|AEC-family-transporter
MADIVSLLLPFFGLILIGYIAAKATKQPAEALGWLNTFIIYAALPALFFKLVSSTPIEELTRVDFIATDIAATYAVFILLFAIGRLLRGNSLADCTIQSFAGAYGNIGYMGPGLALLALGEGAAVPVALIICFENALHFIVAPALMAAAGDDKRSTGQLVADIVRKVGLHPFILSTTLGFAVAALHLDQPLAFQRLVDYLAQAAAPCALFAMGVTLALRPLKRIPAEISYIVPAKLILHPIAVFVALTAIGGFEPVWIQAAVLLACLPTATNVFVIGQQYGVWQERASATILITTVFSVVTVSLWLIVIRSGLLPLQLFP
>NZ_CP048280.1|WP_020049813.1|1886293_1887505_+|UbiH/UbiF-family-hydroxylase
MKTFEVAVVGGGLAGMIAAIALARGGRSVALVAPVAPKEDRRTTALMDQSIRFLDRLALWEKLRPAAAPLTSMRIVDGTDRLLRAPTTTFRAADVGLDAFGYNFPNRALIDILEEAAAGEGNITRFTGMAESIDISAEVVSITLAGGETLSADFAVGADGRGSKLRETAGITVRNWSYPQSAMVLNFAHSLPHQNISTEFHTKHGPFTQVPLPGSRSSLVWVQDPAEAASRMELPLAELGALVEARMQSMLGKVSVEEGVQVWPLSGMMAHRFGKGRIALIGEAAHVFPPIGAQGLNLSLRDIMTLAAILCDRAELPVPADAGESFDRKRRADIMTRTASVDLLNRSLLSDFLPVQMLRAAGLHILSAIPPLRNIVMREGIEPGRGFRDIPDALREKLKRKKA
>NZ_CP048280.1|WP_026265232.1|1885742_1886255_+|DUF934-domain-containing-protein
MTKIWRETGFVENDPWVIETDELKATEEQKPLLGLDELIAKADESNDVGLGVLIKPADDVRRLEPYLYRLEIVAVAFPAFNDGRAFSHASLLRQRLGYTNELRAVGDVLIDQVPLMLRVGIDSFSVTNATALKRLSENRLPAIPHHYQPAVRDAEAGKGYSWRRQAKPAA
>NZ_CP048280.1|WP_020049811.1|1884061_1885732_+|nitrite/sulfite-reductase
MYRYDEFDHAFVTERVEQFRDQVQRRLSGELAEDAFKPLRLMNGVYLQLHAYMLRIAIPYGTLSSRQLRMLAHIARTYDRGYGHFTTRQNLQFNWPKLSDIPDALADLASVEMHALQTSGNCIRNVTADHFAGAAADEVADPRPYAEILRQWSSVHPEFSFLPRKFKIAVTGAERDRAAIQVHDIGLHVKKNDKGEIGFAVYVGGGQGRTPMIAKLIRDFLPEEDLLSYTTAIVRVYNLHGRRDNKYKARIKILVHETGTEELTRQVEAEFAALKDTELKLPEKDVQSIAAYFAPPELPQRAEGWENLARWKKADSGFSRWVQQNVQPHKNPDYGMVTISLKPIGGIPGDASDPQMDAIADLAEEYAFDEIRVSHEQNLILPHVALADLEAVYRGLVAINLAEANAGLITDIIACPGLDYCALANARSIPLAQEISRRFGNAERQAEIGELKIKISGCINACGHHHVGHIGLLGVEKKGAELYQITLGGSGDEHTSIGEIIGRGFEPDRVTDAIETIVDTYLGLRLDPSENFLAAYRRVGPQPFKTALYGATAEAA
>NZ_CP048280.1|WP_011651871.1|1883738_1884053_+|DUF2849-domain-containing-protein
MGDKVLTANRLTDGIAVWLDANGKWSTSLQEALVARHAEAVAALEAIGKKSYADNEVVDVAVVDVQETNGILWPLRLRERIRAQGPTMEYAPGYAPADPEFIAV
>NZ_CP048280.1|WP_026265231.1|1882299_1883736_+|uroporphyrinogen-III-C-methyltransferase
MPPKTEQLSVFPAFFRVEGQKTAVFGNGDEAFAKVRLLLNTKARIVAYADRPEADYHAFLIANRIETVRAAFSAEQVEGSALVFAATGNEADDRSIVDAARAARIPANAVDQPDYCDFFTPALVNRAPVAVAIGTEGAGPVLAQMIRAQIDQLLSPSLGRLAGLATSYRKAVEQLVPRGVSRRVFWRRFFSGAVADAVANGNLPQAHHAADRLLHAMDKVAGHVWLVGAGPGAEDLLTLRAQRVMMEADVIVYDALVPQAIVDMGRRDAERLSVGKRKGCHSKSQEEINDLLVDLGRQGKRVVRLKSGDPLVYGRAGEEMAALRAAGVTYEVVPGITSAFAAAADFELPLTLRGVASSLVFTTGHDLTGDVLPDWASLAVSGATIAVYMGRTVAASVAERLMQAGIPAETTVAVIENASRTERRLLHGTLADLPDLQRRDELTGPVMVIIGDAVAGANFELSEPLVRANARLEELARS
>NZ_CP048280.1|WP_020049809.1|1881443_1882031_-|nucleoside-deaminase
MPDKTIASRLLSVIEGDILPLTERGVSLGNKVFGAAILGKSDLSLVVAETNNELENPLWHGEVHTLKRFYELGDKPPTKDLIFLSTHEPCTMCMSAITWAGFDNFYYFFSHEDSRDAFAIPHDLKILKEVFGLEPGGYRRQNAFWNSFAIADLVETEEAMLKTALKTQTARIKARYDALSTSYQSSKSDNDIPLN
>NZ_CP048280.1|WP_020049808.1|1880577_1881423_-|nucleoside-triphosphate-pyrophosphohydrolase
MQPSKDISRLIEIMAALRHPETGCPWDIVQSFETIKPYTIEEAYEVSDAIERGDMDDLCDELGDLLLQVVFHARMAEEAGEFSFGDVVNAITTKMIRRHPHVFARSAADTPDAVKRQWDEIKQAEKRERAERRSRRGITEDFNSGFLGSVQRSFPALTEALKLQERAAKVGFDWSAPEPILDKIEEEIGELRAALREGDQAKVSDELGDLIFAVVNIGRHVKADPEQAVRGTNTKFRRRFSHIENVLEAEGETLEAASLERMEEIWQAAKAIERAVTSGAE
>NZ_CP048280.1|WP_020049807.1|1878913_1880239_+|GTPase-HflX
MRATVVVPVLKSRNRGGQSESASTRTPESRLEEATGLAQAIDLDVVNGSIVPVNDPRPATLLGTGKIEEIKALLDERDSGLVIVDHPLTPVQQRNLEKEWNAKVIDRTGLILEIFGRRASTKEGTLQVDLAHLNYQKGRLVRSWTHLERQRGGGGFMGGPGETQIEADRRMLQDRIIKLERELEQVVRTRQLHRAKRRKVPHPIVALVGYTNAGKSTLFNRITGAGVLAEDMLFATLDPTLRRMKLPHGRTVILSDTVGFISDLPTHLVAAFRATLEEVLEADLILHVRDMSDADNQAQSSDVMRILNDLGIDEAEAEKRLIEVWNKIDRLEPEVHDTMVQKSAGASNVVAVSAVSGEGVDTLMEEISRRLSGVMTVATIRLPVDKLALLPWLYDHAIVDSREDNEDGTITLDLRLSETEATELERRIGNGPKSDKEDWER
>NZ_CP048280.1|WP_003539403.1|1878593_1878836_+|RNA-chaperone-Hfq
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPGQPMQMFESEEAAS
>NZ_CP048280.1|WP_020049815.1|1888661_1889597_-|MBL-fold-metallo-hydrolase
MNLETKISLENTAHTGRPRLDELVPSRYAVRIGEIDVLVISDGVLPLPTAMLGHNAEPAARAAWLGDMFLPQDAFDWALNVVVVRSGGQTILIDAGLGLDPDLNLPRAGQLMKRLAAAGIDLASVTDVVLTHMHMDHVGGLLVDGVKEQLNPDLRIHVAAAEVKFWESPDFSHVSMPAGFPDALRAAAKRFSKDYQSQLRLFEDEHEVAPGVVVSRTGGHTPGHSVVRVASGNDRLMFAGDAVFAVGFDHPDWFNGFEHDPEEAARVRVRLLRELAATGELLVATHMPFPSVGHVAVDGDAFRWVPVFWDY
>NZ_CP048280.1|WP_020049816.1|1889806_1890295_-|hypothetical-protein
MNIETIIFGPSDWVPNNPHLPVLLYRGLFADGGPTDFERRFAANGWTGIWRNGVFDYQHYHSGAHEVLGIELGSATLLIGGPGGQAIAVAAGDCLVLPAGTGHQNLGCTSNFQVIGAYPKGQHADIQTSAASSETLTKISSVPLPDTDPVQGPSGFLIEQWR
>NZ_CP048280.1|WP_020049817.1|1890592_1891384_-|SDR-family-oxidoreductase
MQIDLTGKTALVTGSTEGIGYAIARQLARAGADVVVNGRSEEKTAKAAGRLKGEGAKGSVTAAAADLATAGGCDALVAQVPHVDILINNAGIFQPLDFFDADDEVWDRHWQVNVMSAVRLSRAYLPGMQKLDWGRVIFIASESGFNIPVEMIHYGVSKTADIAVARGLAKRMAGTGVTVNSVLPGPTLSEGVEAMLAEERAKTGKPIEEVAADFVKKHRAGSIIQRAASVEEIANLVTYLASPLASATTGASMRVDGGLIDTL
>NZ_CP048280.1|WP_003559202.1|1891496_1892267_-|glucose-1-dehydrogenase
MQKNAPDFSLEGKVTLVTGASRGIGRACALACAAAGSDIVLGVRDVAASAGLVAELEGAGRKVLPVELDIPNKAHIAQAVDAALATFGRIDVLVNNVGVAPGNLAELVEEKDLDEILDVNIKGTFLMTQAVGRHMIKRNGGRIINISSQAGTVALRGEAIYCMSKAAINHLTRCLAAEWARYNVTVNTVSPTFIHTDGTAPFLSDADNREATLGHIPLGRIGETDDVVGAVVFLASPAASLITGANLLVDGGWSVA
>NZ_CP048280.1|WP_020049820.1|1892508_1893258_-|cytochrome-c-biogenesis-protein-CcdA
MSIADISLWSALIAGALSFLSPCVLPLVPPYLCYMAGISVEQFRGGGAVAVAPDVRRGVFFSALLFTLGFATVFVALGAGASSIGMALRQHLDLLSKIGGLIIIVMGLNFLGLFRIGVLAREARFQSSGKPATLTGAYIMGLAFAFGWTPCIGPVLGAILGVAASRETVGSGAGLLAIYSLGLAIPFWIAAGFSGAFMRFLSRFRRHLGTVEKVMGLFLVLTGLAFLFGWVSNVAIWFQQTFPILMQIG
>NZ_CP048280.1|WP_020049822.1|1893881_1894100_-|hypothetical-protein
MATVVVISVEGQDGLWIADLDNGTVVPLPEPKSGGLKVVTDLRATGTTLTKGVNIAVVVKSAEAALSGHYDG
>NZ_CP048280.1|WP_020049823.1|1894124_1896053_-|membrane-protein
MAFVLKTFGRLQLVDEDGNDVAFPEKGLLLLAYLFTTDQGSADRATLVSFLWGDADRDDTLATLRKLISRMKARQIELGINILSSQGNMVTVDRESLSSDILLSGTEEEVEPFSRLKLLVKLMNQPFLESVHSHSRRFQLWLAEREISHIALLGNTLRAASRLAQSPKESELLRKAAVILFRAEPKDPVTLQMLIEIFQAEDEVASLRNHFEQRRNAILRGTAARTRPDGDAISLRPTSSPSMPKLETAFPLEPQDIRIAIPRLVLLPPKNQSARPQVGFLAASLVEDITIGFCAFNSLEVIAPYSAVQIGHHVETQKAFFERHRVNYILDTRISNTGDEVTLFAQLIFFDQNQIVWAERFSLDHMDLVKDRRVVARRIALSVSSEIERHEALREDLNPIAYHRYLVGRRHLARLTLPNLRRARKEMKAALSVSPDFAPALSSMARTYSKEWLLTARGDADLLQSAETLAKQATETRPDFADGYREFGVAKLLQGAFDESAEAMEVAESLAPHYADVIADYADTLVHCSLPAMALRKIERAIELNPLGPDTYFWTGAGANYALGEFEASLDYIGQMADPSLADRLSAASWAMLGRQDKARIFVRRFREGNPDFDVDKWLSAVPSKEQWHKDLYREGLKKAGF
>NZ_CP048280.1|WP_020049824.1|1896470_1896671_-|hypothetical-protein
MIRSQIADAQTALSDEEVALCQRVFDHISSVREITTDTEREDLAQRVIHSYQHGVKDEAALMRLLI
>NZ_CP048280.1|WP_017960349.1|1897239_1897467_+|hypothetical-protein
MFQGMHGSKSALGPEDLTMIKDIYDEWCAARCCSKDSPSAIKAAQELISMFEHGVRSKDDLRTMVGTIGAHLLKH
>NZ_CP048280.1|WP_020049825.1|1897636_1897840_+|CsbD-family-protein
MDWNRIEGNWKQAKGKVKEQWGKLTDDDLDQIAGKRDQLEGKIQERYGIEKDRVKRDIDDWSGRQTW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	273153-273198	2	0.957
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP018233	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence	81357-81402	2	0.957
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	248459-248485	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	399782-399808	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	27034-27060	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	151128-151154	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	261043-261069	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	344232-344258	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	249323-249349	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	344234-344260	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1970543-1970569	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	388329-388355	2	0.926
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	249334-249360	2	0.926
NZ_CP048280_1	1.1\|596008\|26\|NZ_CP048280\|CRISPRCasFinder	596008-596033	26	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	457581-457606	3	0.885
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	63347-63373	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	74561-74587	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	331454-331480	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	73412-73438	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	426399-426425	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1243338-1243364	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	820856-820882	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	149442-149468	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	820404-820430	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	334183-334209	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	149438-149464	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	204189-204215	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	213691-213717	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	524789-524815	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	7465-7491	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	328736-328762	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	161098-161124	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	488440-488466	3	0.889
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	236294-236320	3	0.889
NZ_CP048280_1	1.1\|596008\|26\|NZ_CP048280\|CRISPRCasFinder	596008-596033	26	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	212758-212783	4	0.846
NZ_CP048280_1	1.1\|596008\|26\|NZ_CP048280\|CRISPRCasFinder	596008-596033	26	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	335255-335280	4	0.846
NZ_CP048280_1	1.1\|596008\|26\|NZ_CP048280\|CRISPRCasFinder	596008-596033	26	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	335690-335715	4	0.846
NZ_CP048280_1	1.1\|596008\|26\|NZ_CP048280\|CRISPRCasFinder	596008-596033	26	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	341696-341721	4	0.846
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP050101	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence	86407-86452	4	0.913
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	86281-86326	4	0.913
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP007050	Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence	228891-228936	4	0.913
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	203886-203912	4	0.852
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1142099-1142125	4	0.852
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	245089-245134	5	0.891
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	388896-388922	5	0.815
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	490411-490437	5	0.815
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	424680-424706	5	0.815
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054025	Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence	90809-90835	5	0.815
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	53686-53712	5	0.815
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	168265-168310	6	0.87
NZ_CP048280_4	4.1\|1888514\|27\|NZ_CP048280\|CRISPRCasFinder	1888514-1888540	27	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	298202-298228	6	0.778
NZ_CP048280_2	2.1\|1066224\|46\|NZ_CP048280\|CRISPRCasFinder	1066224-1066269	46	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	315613-315658	7	0.848

1. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 2, identity: 0.957

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagcga	Protospacer
******************************************** .

2. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP018233 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.957

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagcga	Protospacer
******************************************** .

3. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcggaaacaaa	Protospacer
******************.*******.

4. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcggaaacaaa	Protospacer
******************.*******.

5. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcggagaaacaaa	Protospacer
***************** ********.

6. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttacgtccggaattgcgcagaaacaaa	Protospacer
**.***********************.

7. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttacgtccggaattgcgcagaaacaaa	Protospacer
**.***********************.

8. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtggaaacaag	Protospacer
*****************..********

9. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtggaaacaag	Protospacer
*****************..********

10. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtggaaacaag	Protospacer
*****************..********

11. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcaaaaactag	Protospacer
*******************.**** **

12. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtggaaacaag	Protospacer
*****************..********

13. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 2, identity: 0.926

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtggaaacaag	Protospacer
*****************..********

14. spacer 1.1|596008|26|NZ_CP048280|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 3, identity: 0.885

ccgggataaaggcatgcataaaataa	CRISPR spacer
ccgggataacggcatgcataaaaaca	Protospacer
********* *************  *

15. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

16. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

17. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

18. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

19. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaactgcgtagaaacaaa	Protospacer
************.****.********.

20. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttccgtccggaattgcgcagaaacata	Protospacer
** ********************** .

21. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttccgtccggaattgcgtagaaacaaa	Protospacer
** **************.********.

22. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

23. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttccgtccggaattgcgtagaaacaaa	Protospacer
** **************.********.

24. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
tcgcgtccggaattgcgcggaaacaaa	Protospacer
*.****************.*******.

25. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaatttcgcaaaaacaaa	Protospacer
************** ****.******.

26. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcggcaacaaa	Protospacer
******************.* *****.

27. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

28. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

29. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcggaaaccaa	Protospacer
******************.***** *.

30. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

31. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcggaaaccaa	Protospacer
******************.***** *.

32. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

33. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 3, identity: 0.889

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtaaaaacaaa	Protospacer
*****************.*.******.

34. spacer 1.1|596008|26|NZ_CP048280|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 4, identity: 0.846

ccgggataaaggcatgcataaaataa	CRISPR spacer
ccgggataacgacatgcataaaaaca	Protospacer
********* *.***********  *

35. spacer 1.1|596008|26|NZ_CP048280|CRISPRCasFinder matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 4, identity: 0.846

ccgggataaaggcatgcataaaataa	CRISPR spacer
ccgggatgaaggcatgcatgaaaaca	Protospacer
*******.***********.***  *

36. spacer 1.1|596008|26|NZ_CP048280|CRISPRCasFinder matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 4, identity: 0.846

ccgggataaaggcatgcataaaataa	CRISPR spacer
ccgggatgaaggcatgcatgaaaaca	Protospacer
*******.***********.***  *

37. spacer 1.1|596008|26|NZ_CP048280|CRISPRCasFinder matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 4, identity: 0.846

ccgggataaaggcatgcataaaataa	CRISPR spacer
ccgggatgaaggcatgcatgaaaaca	Protospacer
*******.***********.***  *

38. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050101 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b6, complete sequence) position: , mismatch: 4, identity: 0.913

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
tttcggcgcagccgaagcaatcgatccaatgaatcgattgcagcaa	Protospacer
 ***************************.*************** .

39. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 4, identity: 0.913

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
tttcggcgcagccgaagcaatcgatccaatgaatcgattgcagcaa	Protospacer
 ***************************.*************** .

40. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP007050 (Rhizobium leguminosarum bv. trifolii WSM1689 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.913

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
tttcggcacagccgaagcaatcgatccagtgaatcgattgcagcga	Protospacer
 ******.************************************ .

41. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 4, identity: 0.852

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgttgaaacgaa	Protospacer
*****************. *****.*.

42. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 4, identity: 0.852

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgcaaaagctaa	Protospacer
*******************.**.* *.

43. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 5, identity: 0.891

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
gtcgggcgcagcccgagcaatcgatccagtgaatcgattgcagcgg	Protospacer
**. ********* .***************************** *

44. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 5, identity: 0.815

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtagagcaaac	Protospacer
*****************.***.  **

45. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 5, identity: 0.815

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtagagcaaac	Protospacer
*****************.***.  **

46. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 5, identity: 0.815

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
ttgcgtccggaattgcgtagagcaaac	Protospacer
*****************.***.  **

47. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054025 (Rhizobium sp. JKLM12A2 plasmid pPR12A204, complete sequence) position: , mismatch: 5, identity: 0.815

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
tcccgtccggaattgcgtaaaaacaaa	Protospacer
*. **************.*.******.

48. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP054034 (Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence) position: , mismatch: 5, identity: 0.815

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
tcccgtccggaattgcgtaaaaacaaa	Protospacer
*. **************.*.******.

49. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 6, identity: 0.87

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
gtcgggcgcagcccgagcaatcgatccagtgaatcgattgcagcga	Protospacer
**. ********* .***************************** .

50. spacer 4.1|1888514|27|NZ_CP048280|CRISPRCasFinder matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 6, identity: 0.778

ttgcgtccggaattgcgcagaaacaag	CRISPR spacer
caccgtccggaattgcgtaaaaacaaa	Protospacer
.  **************.*.******.

51. spacer 2.1|1066224|46|NZ_CP048280|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 7, identity: 0.848

gttcggcgcagccgaagcaatcgatccagtgaatcgattgcagctg	CRISPR spacer
atcgggcgcagcccgagcaatcgatccagtgaatcgattgcagcga	Protospacer
.*. ********* .***************************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1735969 : 1749349

uncultured_Mediterranean_phage(90.91%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265213.1\|1735969_1736983_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.6e-25	42.6
WP_020049690.1\|1737001_1737859_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.6e-34	38.5
WP_020049691.1\|1737855_1738572_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.8e-39	47.8
WP_003538990.1\|1738758_1738950_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.9e-09	72.1
WP_020049693.1\|1739001_1739613_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_020049694.1\|1739609_1740437_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	4.7e-54	46.9
WP_020049695.1\|1740538_1741822_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.7e-98	45.8
WP_017991200.1\|1741826_1742600_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	30.2
WP_011651660.1\|1742596_1743250_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	7.6e-15	33.5
WP_026265214.1\|1743491_1745090_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	8.6e-12	29.2
WP_020049697.1\|1745232_1746105_-	ATP-binding protein	NA	NA	NA	NA
WP_003539006.1\|1746415_1746763_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.4e-12	39.1
WP_020049698.1\|1746808_1749349_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.3e-57	48.2

DBSCAN-SWA_2

2006974 : 2017200

uncultured_Mediterranean_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020049915.1\|2006974_2009896_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.3
WP_020049916.1\|2010179_2010689_+	single-stranded DNA-binding protein	R9TP78	Rhizobium_phage	1.2e-44	73.7
WP_020049917.1\|2010808_2011456_-	MarC family protein	NA	NA	NA	NA
WP_020049918.1\|2011692_2014530_+	DNA gyrase subunit A	A0A1B1IVS2	uncultured_Mediterranean_phage	6.1e-77	42.2
WP_020049919.1\|2015173_2015452_-	hypothetical protein	NA	NA	NA	NA
WP_020049920.1\|2015542_2016037_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	8.0e-25	37.8
WP_020049921.1\|2016088_2016661_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.1e-41	51.5
WP_003539661.1\|2016690_2017200_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-45	59.4

DBSCAN-SWA_3

3080519 : 3117668

Ochrobactrum_phage(29.03%)

transposase,head,integrase,tail

attL 3085712:3085726|attR 3122535:3122549

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020050909.1\|3080519_3081323_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	2.7e-107	70.5
WP_020050910.1\|3081471_3083091_-	hypothetical protein	A0A076YNG2	Rhizobium_phage	1.9e-46	31.9
WP_020050911.1\|3083093_3083765_-	hypothetical protein	R9U4D4	Rhizobium_phage	3.5e-31	55.3
WP_020050912.1\|3083761_3084775_-	hypothetical protein	A0A068CE15	Rhizobium_phage	9.0e-23	30.9
WP_020050913.1\|3084774_3085371_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_020050914.1\|3085370_3086510_-	hypothetical protein	A0A192Y6E4	Salmonella_phage	1.6e-28	30.8
3085712:3085726	attL	NA	NA	NA	NA
WP_020050915.1\|3086511_3086973_-	hypothetical protein	NA	NA	NA	NA
WP_020050916.1\|3087031_3087547_-	hypothetical protein	R9TP58	Rhizobium_phage	9.2e-16	41.3
WP_050565851.1\|3087546_3088743_-	Mu P family protein	A0A2P9JZK3	Alteromonadaceae_phage	5.8e-29	28.5
WP_020050918.1\|3088739_3089984_-	hypothetical protein	A0A2H4JGT4	uncultured_Caudovirales_phage	5.5e-06	31.8
WP_020050919.1\|3089983_3092410_-\|tail	phage tail tape measure protein	R9TP54	Rhizobium_phage	5.7e-15	23.6
WP_020050921.1\|3092542_3093025_-	hypothetical protein	NA	NA	NA	NA
WP_020050922.1\|3093021_3093384_-	hypothetical protein	NA	NA	NA	NA
WP_020050923.1\|3093399_3094887_-	hypothetical protein	A0A068CC80	Rhizobium_phage	4.7e-20	26.1
WP_020050924.1\|3094894_3095086_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_020050925.1\|3095089_3095671_-	hypothetical protein	NA	NA	NA	NA
WP_020050926.1\|3095670_3096105_-	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	8.0e-13	39.8
WP_020050927.1\|3096324_3096750_-	hypothetical protein	NA	NA	NA	NA
WP_020050928.1\|3096877_3097771_-\|head	head protein	A0A1B0T6J4	Pelagibaca_phage	6.2e-76	50.0
WP_020050929.1\|3097780_3098176_-	hypothetical protein	G8DH46	Emiliania_huxleyi_virus	4.0e-11	43.9
WP_020050930.1\|3098177_3099221_-	hypothetical protein	M4SNT6	Rhodobacter_phage	1.1e-36	33.7
WP_020050931.1\|3099305_3099818_-	phage virion morphogenesis protein	A0A1B1P725	Rhodovulum_phage	9.1e-16	36.2
WP_155247552.1\|3099920_3101015_-	hypothetical protein	J9STS2	Pseudomonas_phage	9.6e-55	45.3
WP_020050933.1\|3101121_3102729_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	2.0e-109	43.4
WP_155247507.1\|3102728_3104408_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	3.0e-217	73.7
WP_020050935.1\|3104397_3104577_-	hypothetical protein	NA	NA	NA	NA
WP_032999213.1\|3104576_3105200_-	DUF3486 family protein	A0A219VH75	Ochrobactrum_phage	5.8e-65	68.3
WP_020050937.1\|3105202_3105520_-	hypothetical protein	M4SPS4	Rhodobacter_phage	1.2e-18	44.3
WP_020050938.1\|3105516_3105906_-	hypothetical protein	A0A219VHD8	Ochrobactrum_phage	8.5e-14	37.3
WP_020050939.1\|3105905_3106127_-	molecular chaperone DnaK	NA	NA	NA	NA
WP_155247553.1\|3106355_3106721_-	hypothetical protein	A0A068CE23	Rhizobium_phage	1.4e-15	46.2
WP_020050942.1\|3106726_3107008_-	hypothetical protein	NA	NA	NA	NA
WP_020050943.1\|3106997_3107732_-	TIGR02594 family protein	A0A0S0NA80	Pseudomonas_phage	5.7e-27	41.5
WP_020050944.1\|3107830_3108190_-	hypothetical protein	NA	NA	NA	NA
WP_020050945.1\|3108451_3109102_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	3.3e-47	47.0
WP_020050946.1\|3109176_3109899_+	hypothetical protein	NA	NA	NA	NA
WP_020050947.1\|3109922_3110123_-	hypothetical protein	NA	NA	NA	NA
WP_020050948.1\|3110119_3110794_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	2.5e-77	67.3
WP_020050950.1\|3110991_3111270_-	hypothetical protein	NA	NA	NA	NA
WP_020050951.1\|3111266_3111560_-	hypothetical protein	NA	NA	NA	NA
WP_020050952.1\|3111556_3112576_-	AAA family ATPase	A0A219VHC7	Ochrobactrum_phage	8.3e-93	54.1
WP_020050953.1\|3112699_3114661_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A219VHD4	Ochrobactrum_phage	1.4e-184	67.6
WP_020050954.1\|3114719_3115181_-	hypothetical protein	A0A219VHC5	Ochrobactrum_phage	7.6e-54	70.5
WP_020050955.1\|3115173_3116028_-	ParB N-terminal domain-containing protein	A0A219VHB6	Ochrobactrum_phage	1.6e-76	59.0
WP_020050956.1\|3116027_3116387_-	hypothetical protein	A0A219VHC3	Ochrobactrum_phage	2.4e-18	43.7
WP_020050958.1\|3116514_3116847_-	hypothetical protein	NA	NA	NA	NA
WP_155247508.1\|3116972_3117668_+	transcriptional regulator	R9U2Q5	Rhizobium_phage	8.5e-57	49.4
3122535:3122549	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3257631 : 3280367

Rhodobacter_phage(53.85%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265376.1\|3257631_3259239_-	hypothetical protein	L7TKC4	Rhizobium_phage	2.5e-208	66.6
WP_020051084.1\|3259298_3259574_-	hypothetical protein	NA	NA	NA	NA
WP_020051085.1\|3259585_3260443_-	hypothetical protein	NA	NA	NA	NA
WP_020051086.1\|3260452_3262216_-	hypothetical protein	NA	NA	NA	NA
WP_020051087.1\|3262222_3265579_-	hypothetical protein	G8GWG0	Rhodobacter_phage	8.9e-269	44.5
WP_020051088.1\|3265575_3265995_-	hypothetical protein	A0A1B0T6D9	Thiobacimonas_phage	1.0e-25	43.8
WP_032999215.1\|3265991_3266516_-	hypothetical protein	M4ST87	Rhodobacter_phage	6.9e-51	57.2
WP_020051090.1\|3266512_3266935_-	hypothetical protein	M4SNS6	Rhodobacter_phage	2.3e-36	63.6
WP_020051091.1\|3266931_3270405_-	hypothetical protein	M4SPQ3	Rhodobacter_phage	1.6e-63	33.3
WP_020051092.1\|3270404_3270626_-	hypothetical protein	NA	NA	NA	NA
WP_020051093.1\|3270772_3271186_-	hypothetical protein	NA	NA	NA	NA
WP_020051094.1\|3271225_3272158_-	hypothetical protein	G8GWF3	Rhodobacter_phage	5.6e-88	52.6
WP_020051095.1\|3272158_3272335_-	hypothetical protein	NA	NA	NA	NA
WP_155247514.1\|3272337_3272757_-	hypothetical protein	NA	NA	NA	NA
WP_020051097.1\|3272753_3273182_-	DUF1320 domain-containing protein	G8GWF0	Rhodobacter_phage	1.0e-36	58.9
WP_020051098.1\|3273181_3273847_-	hypothetical protein	NA	NA	NA	NA
WP_020051099.1\|3273948_3274254_-	hypothetical protein	NA	NA	NA	NA
WP_020051100.1\|3274353_3275286_-	hypothetical protein	Q5ZQX7	Pseudomonas_phage	4.5e-77	47.4
WP_020051101.1\|3275312_3275687_-	hypothetical protein	NA	NA	NA	NA
WP_032999495.1\|3275696_3276818_-	hypothetical protein	A4JWJ9	Burkholderia_virus	8.3e-54	37.5
WP_020051103.1\|3277030_3277531_-	phage virion morphogenesis protein	A0A219VH84	Ochrobactrum_phage	3.2e-13	36.9
WP_020051104.1\|3277648_3278893_-	hypothetical protein	F8TVC5	EBPR_siphovirus	2.4e-70	38.4
WP_020051105.1\|3278885_3280367_-	DUF935 family protein	G8GWE1	Rhodobacter_phage	1.9e-50	36.3

DBSCAN-SWA_5

3283720 : 3295703

Rhodobacter_phage(33.33%)

transposase,integrase

attL 3282534:3282547|attR 3294068:3294081

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3282534:3282547	attL	NA	NA	NA	NA
WP_020051112.1\|3283720_3284086_-	hypothetical protein	A0A068CE23	Rhizobium_phage	8.0e-14	43.8
WP_020051113.1\|3284082_3284367_-	hypothetical protein	NA	NA	NA	NA
WP_020051114.1\|3284356_3285070_-	TIGR02594 family protein	A0A1B0WLU0	Flavobacterium_phage	7.5e-24	40.0
WP_155247515.1\|3285149_3285527_-	hypothetical protein	NA	NA	NA	NA
WP_020051116.1\|3285532_3285970_-	hypothetical protein	NA	NA	NA	NA
WP_020051117.1\|3286180_3286825_-	regulatory protein GemA	A0A219VHC6	Ochrobactrum_phage	7.9e-41	43.1
WP_020051118.1\|3286899_3287733_+	hypothetical protein	NA	NA	NA	NA
WP_020051119.1\|3287763_3288411_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	3.8e-67	61.5
WP_020051120.1\|3288446_3288770_-	hypothetical protein	NA	NA	NA	NA
WP_020051121.1\|3288766_3289180_-	hypothetical protein	A0A1B0T6M5	Pelagibaca_phage	3.9e-17	44.0
WP_020051122.1\|3289176_3289800_-	hypothetical protein	NA	NA	NA	NA
WP_026265382.1\|3289799_3290552_-	ATP-binding protein	M4SPU5	Rhodobacter_phage	5.4e-41	38.9
WP_020051124.1\|3290613_3292803_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	7.7e-112	35.7
WP_020051125.1\|3292799_3293018_-	hypothetical protein	NA	NA	NA	NA
WP_020051127.1\|3293115_3293574_-	hypothetical protein	NA	NA	NA	NA
WP_080646664.1\|3293570_3294473_-	ParB N-terminal domain-containing protein	R9U496	Rhizobium_phage	3.5e-10	27.2
3294068:3294081	attR	NA	NA	NA	NA
WP_020051129.1\|3294469_3294775_-	hypothetical protein	NA	NA	NA	NA
WP_020051130.1\|3295019_3295703_+	helix-turn-helix transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	2.4e-35	37.3

DBSCAN-SWA_6

4070943 : 4081028

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020051763.1\|4070943_4071654_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	1.3e-49	48.7
WP_020051764.1\|4071653_4072010_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_020051765.1\|4072006_4072735_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	5.2e-41	37.6
WP_026265463.1\|4072753_4073977_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	5.4e-14	29.4
WP_020051767.1\|4074081_4075056_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.1e-137	74.4
WP_020051768.1\|4075234_4077439_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	4.3e-211	51.3
WP_020051769.1\|4077417_4077822_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.2e-17	45.7
WP_018243700.1\|4077831_4078053_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	7.9e-17	52.1
WP_020051771.1\|4078796_4081028_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.1e-124	37.1

DBSCAN-SWA_7

4224851 : 4236173

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020051914.1\|4224851_4227722_+	hypothetical protein	A0A173GEP8	Erwinia_phage	8.2e-05	29.5
WP_020051915.1\|4227721_4230496_+	hypothetical protein	Q1MVM9	Enterobacteria_phage	3.9e-44	33.3
WP_020051916.1\|4230492_4232925_+	hypothetical protein	M4Q3D8	Dunaliella_viridis_virus	7.8e-65	26.3
WP_020051918.1\|4233301_4233712_-	XRE family transcriptional regulator	K7PKS0	Enterobacteria_phage	2.6e-05	39.7
WP_020051919.1\|4233695_4234262_-	hypothetical protein	NA	NA	NA	NA
WP_020051920.1\|4234365_4235817_+	hypothetical protein	L7TMF7	Rhizobium_phage	6.3e-70	53.9
WP_020051921.1\|4235816_4236173_+	hypothetical protein	A0A0F6WBI7	Sinorhizobium_phage	2.0e-14	53.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP048282

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3528

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052879.1\|1163_2159_+	plasmid partitioning protein RepB	NA	NA	NA	NA
WP_020052880.1\|2313_3528_+	replication initiation protein RepC	L7TKN6	Rhizobium_phage	5.5e-19	28.6

DBSCAN-SWA_2

8014 : 10534

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052887.1\|8014_10534_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.9e-79	35.3

DBSCAN-SWA_3

27574 : 28387

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052897.1\|27574_28387_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-32	35.8

DBSCAN-SWA_4

32567 : 33491

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052902.1\|32567_33491_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	3.7e-07	31.7

DBSCAN-SWA_5

39262 : 47709

Indivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265591.1\|39262_41161_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.2e-23	28.4
WP_032999636.1\|41252_43061_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-46	28.6
WP_020052911.1\|43334_43952_+	flavodoxin family protein	NA	NA	NA	NA
WP_020052912.1\|44303_45710_+	hypothetical protein	NA	NA	NA	NA
WP_020052913.1\|45780_47709_+	PAS domain-containing hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	2.2e-06	21.3

DBSCAN-SWA_6

55328 : 58043

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052921.1\|55328_58043_-	ATP-binding cassette domain-containing protein	A0A1V0SJ29	Klosneuvirus	6.0e-05	24.2

DBSCAN-SWA_7

66010 : 75801

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052928.1\|66010_67900_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.2e-21	32.7
WP_026265592.1\|68055_69399_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_020052930.1\|70054_71392_+	nucleotide sugar dehydrogenase	M1IC36	Acanthocystis_turfacea_Chlorella_virus	7.2e-36	30.7
WP_017968209.1\|71526_71778_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_020052931.1\|71779_72052_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_026265593.1\|72106_73333_-	DUF3095 domain-containing protein	NA	NA	NA	NA
WP_020052933.1\|73506_73986_+	hypothetical protein	NA	NA	NA	NA
WP_020052934.1\|74010_75801_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.0e-34	27.2

DBSCAN-SWA_8

92492 : 96027

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017957841.1\|92492_93257_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-34	39.6
WP_020052950.1\|93301_94375_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_020052951.1\|94371_95202_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_020052952.1\|95259_96027_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	6.4e-21	34.0

DBSCAN-SWA_9

108059 : 108686

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265595.1\|108059_108686_-	DnaJ domain-containing protein	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	8.3e-11	50.0

DBSCAN-SWA_10

112146 : 113682

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052978.1\|112146_113682_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	4.2e-64	33.9

DBSCAN-SWA_11

122410 : 124671

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052986.1\|122410_123187_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.7e-29	35.7
WP_020052987.1\|123183_124671_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	1.1e-45	33.8

DBSCAN-SWA_12

135151 : 139013

Tetraselmis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265598.1\|135151_136822_-	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	1.1e-44	30.0
WP_020053000.1\|137123_139013_+	HAMP domain-containing histidine kinase	A0A2K9L0Z8	Tupanvirus	2.9e-06	23.6

DBSCAN-SWA_13

151038 : 151992

Microcystis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020053012.1\|151038_151992_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	2.7e-13	31.6

DBSCAN-SWA_14

158759 : 160196

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020053019.1\|158759_160196_+	DUF1254 domain-containing protein	M1I2Z8	Paramecium_bursaria_Chlorella_virus	6.3e-123	50.8

DBSCAN-SWA_15

168990 : 169833

Bordetella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032999660.1\|168990_169833_-	AraC family transcriptional regulator	A0A291LAM3	Bordetella_phage	6.8e-08	30.0

DBSCAN-SWA_16

176085 : 177753

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020053036.1\|176085_177753_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.9e-16	32.7

DBSCAN-SWA_17

189419 : 191218

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020053047.1\|189419_190232_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-14	31.7
WP_020053048.1\|190228_191218_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.4e-12	23.0

DBSCAN-SWA_18

226691 : 232735

Diadromus_pulchellus_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265610.1\|226691_227486_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.2e-09	27.8
WP_020053077.1\|227589_229746_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_020053078.1\|229758_230766_+	DNA topoisomerase IB	A0A0U2TSJ7	Niemeyer_virus	1.7e-29	29.1
WP_020053079.1\|230762_231641_+	DNA polymerase domain-containing protein	NA	NA	NA	NA
WP_020053080.1\|231712_232438_-	glutathione S-transferase	NA	NA	NA	NA
WP_020053081.1\|232444_232735_-	DUF3175 domain-containing protein	A0A0F6TH17	Sinorhizobium_phage	3.9e-24	63.4

DBSCAN-SWA_19

237138 : 237801

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052619.1\|237138_237801_-	UdgX family uracil-DNA binding protein	A0A2I6PIA1	Pseudomonas_phage	3.4e-15	34.6

DBSCAN-SWA_20

244778 : 246689

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052628.1\|244778_246689_-	hypothetical protein	A0A1V0SAU3	Catovirus	5.8e-07	32.4

DBSCAN-SWA_21

253462 : 254635

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052634.1\|253462_254635_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.0e-14	32.0

DBSCAN-SWA_22

257801 : 263249

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052637.1\|257801_258860_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	1.1e-23	30.4
WP_020052638.1\|258922_259675_+	metallophosphatase	NA	NA	NA	NA
WP_020052639.1\|259780_261013_+	peptidase T	NA	NA	NA	NA
WP_020052640.1\|261108_261945_-	cell wall hydrolase	A0A142EZU6	Stenotrophomonas_phage	1.3e-06	29.5
WP_020052641.1\|262208_263249_-	sulfate/molybdate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.4e-31	39.9

DBSCAN-SWA_23

268017 : 274164

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052647.1\|268017_268710_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-22	31.4
WP_020052648.1\|268706_271415_-	sensor histidine kinase KdpD	Q8QNA2	Ectocarpus_siliculosus_virus	3.3e-11	33.7
WP_020052649.1\|271497_272067_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_020052650.1\|272103_274164_-	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	3.8e-36	28.1

DBSCAN-SWA_24

278398 : 279760

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052655.1\|278398_279760_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.8e-64	34.8

DBSCAN-SWA_25

284332 : 290320

Bacillus_virus(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052661.1\|284332_285115_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-15	27.6
WP_020665311.1\|285114_285816_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-14	28.2
WP_020052663.1\|285820_286708_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_020052664.1\|286709_287699_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_026265563.1\|287833_289429_+\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	1.7e-55	30.8
WP_020052666.1\|289438_290320_+	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	7.1e-24	30.2

DBSCAN-SWA_26

293471 : 294251

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052669.1\|293471_294251_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.8e-16	29.0

DBSCAN-SWA_27

302264 : 308025

Amsacta_moorei_entomopoxvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052676.1\|302264_303800_-	sugar ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.3e-12	25.8
WP_026265566.1\|303873_304869_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020052678.1\|304917_305730_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.4e-18	28.4
WP_020052679.1\|305928_308025_+	bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	4.6e-05	28.6

DBSCAN-SWA_28

313921 : 314779

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265567.1\|313921_314779_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.8e-61	46.6

DBSCAN-SWA_29

319790 : 326732

Catovirus(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052692.1\|319790_321299_-\|holin	choline-sulfatase	A0A1V0SA98	Catovirus	1.7e-22	26.2
WP_020052693.1\|321441_322344_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_026265569.1\|322445_322649_+	hypothetical protein	NA	NA	NA	NA
WP_020052695.1\|322749_323544_+	hydroxyacid aldolase	NA	NA	NA	NA
WP_020052696.1\|323654_324281_+	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	2.4e-26	37.1
WP_020052697.1\|324284_324962_-	spermidine synthase	NA	NA	NA	NA
WP_020052698.1\|325032_325932_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-17	29.8
WP_020052699.1\|325928_326732_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.4e-12	26.4

DBSCAN-SWA_30

356658 : 359288

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052719.1\|356658_358347_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-15	27.2
WP_020052720.1\|358343_359288_-	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	1.2e-26	28.8

DBSCAN-SWA_31

369252 : 372901

Acanthocystis_turfacea_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052730.1\|369252_369765_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	8.0e-20	37.4
WP_020052731.1\|369833_371030_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_020052732.1\|371065_372901_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.1e-18	29.6

DBSCAN-SWA_32

380942 : 386301

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052743.1\|380942_381650_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-15	29.1
WP_020052744.1\|381642_383406_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.3e-16	30.1
WP_020052745.1\|383392_384226_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_020052746.1\|384277_385426_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_020052747.1\|385455_386301_-	hydratase	M1HUK8	Acanthocystis_turfacea_Chlorella_virus	5.5e-26	33.6

DBSCAN-SWA_33

392414 : 394043

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052752.1\|392414_394043_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-25	36.0

DBSCAN-SWA_34

404873 : 410788

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026265579.1\|404873_406007_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.6e-23	35.0
WP_020052764.1\|406091_408980_-	membrane protein	NA	NA	NA	NA
WP_020052765.1\|408994_410788_-	GMC family oxidoreductase	A0A2K9L353	Tupanvirus	5.5e-31	25.0

DBSCAN-SWA_35

427880 : 432195

Bordetella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052780.1\|427880_428621_+	helix-turn-helix transcriptional regulator	A0A291LAM3	Bordetella_phage	2.5e-14	46.1
WP_020052781.1\|428706_429522_-	oxidoreductase	NA	NA	NA	NA
WP_020052782.1\|429612_430089_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032999625.1\|430173_432195_-	beta-N-acetylhexosaminidase	A0A2H4UUW7	Bodo_saltans_virus	4.0e-06	25.4

DBSCAN-SWA_36

441558 : 448933

Trichoplusia_ni_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032999652.1\|441558_442314_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	7.4e-22	34.7
WP_020052790.1\|442319_443156_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_162676313.1\|443367_443631_+	hypothetical protein	NA	NA	NA	NA
WP_003594835.1\|443782_443929_-	DUF1127 domain-containing protein	NA	NA	NA	NA
WP_020052791.1\|444109_445090_-	3'-5' exonuclease	U5Q053	Bacillus_virus	1.8e-07	37.3
WP_020052792.1\|445174_446554_-	sensor histidine kinase	NA	NA	NA	NA
WP_020052793.1\|446550_447225_-	response regulator transcription factor	NA	NA	NA	NA
WP_020052794.1\|447347_447947_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_020052795.1\|448042_448933_-	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	1.7e-41	34.6

DBSCAN-SWA_37

460468 : 460678

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003548109.1\|460468_460678_+	cold-shock protein	A0A218MMZ6	uncultured_virus	8.9e-10	54.7

DBSCAN-SWA_38

469723 : 470608

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052811.1\|469723_470608_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	1.5e-10	40.4

DBSCAN-SWA_39

474162 : 475071

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052814.1\|474162_475071_-	glutamine amidotransferase family protein	F2Y1G4	Organic_Lake_phycodnavirus	1.1e-06	29.2

DBSCAN-SWA_40

498944 : 502641

Tanapox_virus(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052834.1\|498944_500129_-	serpin family protein	A7XDC9	Tanapox_virus	1.2e-13	27.1
WP_020052835.1\|500142_502641_-\|protease	trypsin-like serine protease	Q6JKF3	Neodiprion_sertifer_nucleopolyhedrovirus	5.1e-27	33.8

DBSCAN-SWA_41

518566 : 518971

Sinorhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012763606.1\|518566_518971_+	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.6e-18	44.0

DBSCAN-SWA_42

528366 : 529140

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020052857.1\|528366_529140_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.6e-33	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048280

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048282

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection