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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP048279 Staphylococcus sp. MI 10-1553 chromosome, complete genome 2 crisprs cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,cas14j,cas3,DEDDh,RT,DinG,csa3,cas9,WYL 0 9 14 0

Results visualization

1. NZ_CP048279
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048279_1 140048-140521 TypeIII NA
6 spacers
cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048279_2 2091792-2092420 TypeII NA
9 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP048279_2 2.7|2092027|30|NZ_CP048279|CRT,CRISPRCasFinder 2092027-2092056 30 MK075005 Staphylococcus phage phiSP119-2, partial genome 4795-4824 3 0.9
NZ_CP048279_2 2.9|2092159|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092159-2092188 30 MK075005 Staphylococcus phage phiSP119-2, partial genome 4795-4824 3 0.9
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP013752 Lactobacillus plantarum strain KP plasmid unnamed3, complete sequence 65038-65070 4 0.879
NZ_CP048279_2 2.2|2091897|28|NZ_CP048279|PILER-CR 2091897-2091924 28 KC821607 Cellulophaga phage phi19:1, complete genome 7895-7922 6 0.786
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 KC413988 Streptococcus phage phiST1, complete genome 12576-12605 6 0.8
NZ_CP048279_2 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092290-2092318 29 MN855764 Siphoviridae sp. isolate 508, partial genome 48364-48392 6 0.793
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NC_019782 Lactobacillus phage AQ113, complete genome 30602-30631 6 0.8
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP009068 Borreliella afzelii K78 plasmid cp32-9, complete sequence 30062-30094 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP015328 Bacillus filamentosus strain Hbe603 plasmid pBEH6, complete sequence 7405-7437 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 MN693111 Marine virus AFVG_25M354, complete genome 16918-16950 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP019921 Borreliella burgdorferi strain PAbe plasmid p_cp32-9-4, complete sequence 59753-59785 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NC_017423 Borreliella burgdorferi N40 plasmid N40_cp32-12, complete sequence 26563-26595 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP019848 Borreliella burgdorferi plasmid cp32-4, complete sequence 29095-29127 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP019759 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-4, complete sequence 29096-29128 7 0.788
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 MN855959 Siphoviridae sp. isolate 167, complete genome 6312-6344 7 0.788
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 LR877331 Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1 75853-75882 7 0.767
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 NC_031095 Klebsiella phage PKO111, complete genome 123151-123180 7 0.767
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 MN101230 Klebsiella phage KPN6, complete genome 57380-57409 7 0.767
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 CP015514 Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence 288860-288889 7 0.767
NZ_CP048279_2 2.5|2091895|29|NZ_CP048279|CRT,CRISPRCasFinder 2091895-2091923 29 KC821607 Cellulophaga phage phi19:1, complete genome 7894-7922 7 0.759
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 MN101230 Klebsiella phage KPN6, complete genome 57380-57410 7 0.774
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 LR877331 Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1 75852-75882 7 0.774
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 NC_031095 Klebsiella phage PKO111, complete genome 123150-123180 7 0.774
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 249692-249724 8 0.758
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NC_011995 Macrococcus caseolyticus JCSC5402 plasmid pMCCL1, complete sequence 4176-4208 8 0.758
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 639984-640016 8 0.758
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP034857 Buchnera aphidicola (Sitobion avenae) strain Sav plasmid pTrp, complete sequence 2831-2863 8 0.758
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 AP011616 Thermus phage phiYS40 DNA, complete genome 35394-35423 8 0.733
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 DQ997624 Thermus thermophilus phage YS40, complete genome 35394-35423 8 0.733
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 NC_008584 Thermus phage phiYS40, complete genome 35394-35423 8 0.733
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 NZ_CP049807 Acinetobacter pittii strain A1254 plasmid pA1254_1, complete sequence 34026-34055 8 0.733
NZ_CP048279_2 2.7|2092027|30|NZ_CP048279|CRT,CRISPRCasFinder 2092027-2092056 30 LR700236 marine metagenome genome assembly, complete genome: monopartite 5723-5752 8 0.733
NZ_CP048279_2 2.9|2092159|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092159-2092188 30 LR700236 marine metagenome genome assembly, complete genome: monopartite 5723-5752 8 0.733
NZ_CP048279_2 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092290-2092318 29 LC553736 Salmonella phage SAP012 DNA, complete sequence 17575-17603 8 0.724
NZ_CP048279_2 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092290-2092318 29 MN694452 Marine virus AFVG_250M839, complete genome 32448-32476 8 0.724
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP017986 Klebsiella pneumoniae strain 825795-1 plasmid unnamed1, complete sequence 54093-54122 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018714 Klebsiella pneumoniae strain Kp_Goe_152021 plasmid pKp_Goe_021-1, complete sequence 160013-160042 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018720 Klebsiella pneumoniae strain KP_Goe_828304 plasmid pKp_Goe_304-1, complete sequence 120021-120050 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018702 Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-1, complete sequence 100464-100493 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP042866 Escherichia coli strain ATCC BAA-196 plasmid unnamed1, complete sequence 50482-50511 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018313 Klebsiella pneumoniae strain Kp_Goe_822579 plasmid pKp_Goe_579-1, complete sequence 342-371 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018687 Klebsiella pneumoniae strain Kp_Goe_149473 plasmid pKp_Goe_473-1, complete sequence 22235-22264 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP034054 Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence 257391-257420 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018696 Klebsiella pneumoniae strain Kp_Goe_149832 plasmid pKp_Goe_832-1, complete sequence 197601-197630 8 0.733
NZ_CP048279_2 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR 2092355-2092384 30 NZ_CP018708 Klebsiella pneumoniae strain Kp_Goe_827026 plasmid pKp_Goe_026-1, complete sequence 150119-150148 8 0.733
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP007513 Bacillus bombysepticus plasmid pBb, complete genome 428798-428830 9 0.727
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP050184 Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence 96866-96898 9 0.727
NZ_CP048279_1 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT 140156-140188 33 NZ_CP033050 Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence 298880-298912 9 0.727
NZ_CP048279_2 2.3|2091963|30|NZ_CP048279|PILER-CR 2091963-2091992 30 NC_048697 Pseudomonas phage Littlefix, complete genome 19802-19831 9 0.7
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 AP011616 Thermus phage phiYS40 DNA, complete genome 35393-35423 9 0.71
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 DQ997624 Thermus thermophilus phage YS40, complete genome 35393-35423 9 0.71
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 NC_008584 Thermus phage phiYS40, complete genome 35393-35423 9 0.71
NZ_CP048279_2 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder 2091960-2091990 31 NZ_CP049807 Acinetobacter pittii strain A1254 plasmid pA1254_1, complete sequence 34026-34056 9 0.71

1. spacer 2.7|2092027|30|NZ_CP048279|CRT,CRISPRCasFinder matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 3, identity: 0.9

aatgctccaaaagcagaaagcacagattcg	CRISPR spacer
aatgctccaaaagcagaaaactcagattct	Protospacer
*******************.* ******* 

2. spacer 2.9|2092159|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to MK075005 (Staphylococcus phage phiSP119-2, partial genome) position: , mismatch: 3, identity: 0.9

aatgctccaaaagcagaaagcacagattcg	CRISPR spacer
aatgctccaaaagcagaaaactcagattct	Protospacer
*******************.* ******* 

3. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013752 (Lactobacillus plantarum strain KP plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.879

-aattatttttttgaattctttatattttttaga	CRISPR spacer
caattcgtttttt-aattctttatatttttttga	Protospacer
 ****  ****** ***************** **

4. spacer 2.2|2091897|28|NZ_CP048279|PILER-CR matches to KC821607 (Cellulophaga phage phi19:1, complete genome) position: , mismatch: 6, identity: 0.786

cattctaatacctaaaatcgcataaata	CRISPR spacer
aaaactaacacctaaaaccgcataaatg	Protospacer
 *  ****.********.*********.

5. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to KC413988 (Streptococcus phage phiST1, complete genome) position: , mismatch: 6, identity: 0.8

cggttgaagatattaaagatgagctagcca	CRISPR spacer
cgtataaagatattcaagatgagctaggta	Protospacer
**  *.******** ************ .*

6. spacer 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to MN855764 (Siphoviridae sp. isolate 508, partial genome) position: , mismatch: 6, identity: 0.793

atagcctctgcaacttctttat---gctttat	CRISPR spacer
ttagcttctgcaacttctttattaaactt---	Protospacer
 ****.****************   .***   

7. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NC_019782 (Lactobacillus phage AQ113, complete genome) position: , mismatch: 6, identity: 0.8

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
tcagaatctttatagtgagctatttcttca	Protospacer
* ** .* .******** ************

8. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009068 (Borreliella afzelii K78 plasmid cp32-9, complete sequence) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatatt---ttttaga	CRISPR spacer
cattatttttttgaatgctttttattacattct---	Protospacer
 *************** **** ****   **.*   

9. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015328 (Bacillus filamentosus strain Hbe603 plasmid pBEH6, complete sequence) position: , mismatch: 7, identity: 0.788

aatta--tttttttgaattctttatattttttaga	CRISPR spacer
--ttaacttttttaggattctttatattttttcct	Protospacer
  ***  ****** *.****************   

10. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to MN693111 (Marine virus AFVG_25M354, complete genome) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatattttttaga	CRISPR spacer
tctttcttttttggattttttatattttttaaa	Protospacer
  ** .*******.***.*************.*

11. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019921 (Borreliella burgdorferi strain PAbe plasmid p_cp32-9-4, complete sequence) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatat----tttttaga	CRISPR spacer
cattatttttttgaatactttttataacatttt----	Protospacer
 *************** **** ***    ****    

12. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NC_017423 (Borreliella burgdorferi N40 plasmid N40_cp32-12, complete sequence) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatat----tttttaga	CRISPR spacer
cattatttttttgaatactttttataacatttt----	Protospacer
 *************** **** ***    ****    

13. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019848 (Borreliella burgdorferi plasmid cp32-4, complete sequence) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatat----tttttaga	CRISPR spacer
cattatttttttgaatactttttataacatttt----	Protospacer
 *************** **** ***    ****    

14. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019759 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_cp32-4, complete sequence) position: , mismatch: 7, identity: 0.788

aattatttttttgaattctttatat----tttttaga	CRISPR spacer
cattatttttttgaatactttttataacatttt----	Protospacer
 *************** **** ***    ****    

15. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to MN855959 (Siphoviridae sp. isolate 167, complete genome) position: , mismatch: 7, identity: 0.788

-aattatttttttgaattctttatattttttaga	CRISPR spacer
taaata-ttttttgaattctttttatttattgcg	Protospacer
 ** ** *************** ***** **. .

16. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to LR877331 (Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.767

cggttgaagatattaaagatgagctagcca	CRISPR spacer
cgtttgaagataataaagatgagcctttga	Protospacer
** ********* ***********.  . *

17. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to NC_031095 (Klebsiella phage PKO111, complete genome) position: , mismatch: 7, identity: 0.767

cggttgaagatattaaagatgagctagcca	CRISPR spacer
cgtttgaagataataaagatgagcctttga	Protospacer
** ********* ***********.  . *

18. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to MN101230 (Klebsiella phage KPN6, complete genome) position: , mismatch: 7, identity: 0.767

cggttgaagatattaaagatgagctagcca	CRISPR spacer
cgtttgaagataataaagatgagcctttga	Protospacer
** ********* ***********.  . *

19. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cggttga--agatattaaagatgagctagcca	CRISPR spacer
--atttatccgattttaaagatgagctagcct	Protospacer
  .** *   *** ***************** 

20. spacer 2.5|2091895|29|NZ_CP048279|CRT,CRISPRCasFinder matches to KC821607 (Cellulophaga phage phi19:1, complete genome) position: , mismatch: 7, identity: 0.759

acattctaatacctaaaatcgcataaata	CRISPR spacer
taaaactaacacctaaaaccgcataaatg	Protospacer
  *  ****.********.*********.

21. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to MN101230 (Klebsiella phage KPN6, complete genome) position: , mismatch: 7, identity: 0.774

acggttgaagatattaaagatgagctagcca	CRISPR spacer
acgtttgaagataataaagatgagcctttga	Protospacer
*** ********* ***********.  . *

22. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to LR877331 (Klebsiella phage vB_KpnM_311F genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.774

acggttgaagatattaaagatgagctagcca	CRISPR spacer
acgtttgaagataataaagatgagcctttga	Protospacer
*** ********* ***********.  . *

23. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to NC_031095 (Klebsiella phage PKO111, complete genome) position: , mismatch: 7, identity: 0.774

acggttgaagatattaaagatgagctagcca	CRISPR spacer
acgtttgaagataataaagatgagcctttga	Protospacer
*** ********* ***********.  . *

24. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.758

aattatttttttgaattctttatattttttaga	CRISPR spacer
gttttatcttttcaattctttttattttttagt	Protospacer
. **  *.**** ******** ********** 

25. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NC_011995 (Macrococcus caseolyticus JCSC5402 plasmid pMCCL1, complete sequence) position: , mismatch: 8, identity: 0.758

aattatttttttgaattctttatattttttaga	CRISPR spacer
ttttatttttttaaattttttatattcataata	Protospacer
  **********.****.********. * * *

26. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 8, identity: 0.758

aattatttttttgaattctttatattttttaga	CRISPR spacer
agcaaattttttgaattttttaaattttttcta	Protospacer
*.. * ***********.**** *******  *

27. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034857 (Buchnera aphidicola (Sitobion avenae) strain Sav plasmid pTrp, complete sequence) position: , mismatch: 8, identity: 0.758

aattatttttttgaattctttatattttttaga	CRISPR spacer
tagttcttttttgaattctttttatttcttggg	Protospacer
 * * .*************** *****.**.*.

28. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to AP011616 (Thermus phage phiYS40 DNA, complete genome) position: , mismatch: 8, identity: 0.733

cggttgaagatattaaagatgagctagcca	CRISPR spacer
taattgaagaaattaaagatgagctttctt	Protospacer
...******* **************  *. 

29. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to DQ997624 (Thermus thermophilus phage YS40, complete genome) position: , mismatch: 8, identity: 0.733

cggttgaagatattaaagatgagctagcca	CRISPR spacer
taattgaagaaattaaagatgagctttctt	Protospacer
...******* **************  *. 

30. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to NC_008584 (Thermus phage phiYS40, complete genome) position: , mismatch: 8, identity: 0.733

cggttgaagatattaaagatgagctagcca	CRISPR spacer
taattgaagaaattaaagatgagctttctt	Protospacer
...******* **************  *. 

31. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to NZ_CP049807 (Acinetobacter pittii strain A1254 plasmid pA1254_1, complete sequence) position: , mismatch: 8, identity: 0.733

cggttgaagatattaaagatgagctagcca	CRISPR spacer
agattgaagagattaaagaagagctattac	Protospacer
 *.******* ******** ****** .  

32. spacer 2.7|2092027|30|NZ_CP048279|CRT,CRISPRCasFinder matches to LR700236 (marine metagenome genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

aatgctccaaaagcagaaagcacagattcg	CRISPR spacer
gaggctcccaaagcagaaagcacattaact	Protospacer
.* ***** ***************    * 

33. spacer 2.9|2092159|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to LR700236 (marine metagenome genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.733

aatgctccaaaagcagaaagcacagattcg	CRISPR spacer
gaggctcccaaagcagaaagcacattaact	Protospacer
.* ***** ***************    * 

34. spacer 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to LC553736 (Salmonella phage SAP012 DNA, complete sequence) position: , mismatch: 8, identity: 0.724

atagcctctgcaacttctttatgctttat	CRISPR spacer
tgcacctctgcaacttctttatccgtttc	Protospacer
   .****************** * ** .

35. spacer 2.11|2092290|29|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to MN694452 (Marine virus AFVG_250M839, complete genome) position: , mismatch: 8, identity: 0.724

atagcctctgcaacttctttatgctttat	CRISPR spacer
tccatatctgcaacttctctatactttat	Protospacer
 . .. ************.***.******

36. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017986 (Klebsiella pneumoniae strain 825795-1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

37. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018714 (Klebsiella pneumoniae strain Kp_Goe_152021 plasmid pKp_Goe_021-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

38. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018720 (Klebsiella pneumoniae strain KP_Goe_828304 plasmid pKp_Goe_304-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

39. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018702 (Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

40. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP042866 (Escherichia coli strain ATCC BAA-196 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

41. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018313 (Klebsiella pneumoniae strain Kp_Goe_822579 plasmid pKp_Goe_579-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

42. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018687 (Klebsiella pneumoniae strain Kp_Goe_149473 plasmid pKp_Goe_473-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

43. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP034054 (Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

44. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018696 (Klebsiella pneumoniae strain Kp_Goe_149832 plasmid pKp_Goe_832-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

45. spacer 2.12|2092355|30|NZ_CP048279|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018708 (Klebsiella pneumoniae strain Kp_Goe_827026 plasmid pKp_Goe_026-1, complete sequence) position: , mismatch: 8, identity: 0.733

taagtgtacttatagtgtgctatttcttca	CRISPR spacer
ccaccccactaatagtctgctatttcttca	Protospacer
. * . .*** ***** *************

46. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 9, identity: 0.727

aattatttttttgaattctttatattttttaga	CRISPR spacer
ttctccttttttaatttctttatattttttatc	Protospacer
  .* .******.* ****************  

47. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 9, identity: 0.727

aattatttttttgaattctttatattttttaga	CRISPR spacer
ttctccttttttaatttctttatattttttatc	Protospacer
  .* .******.* ****************  

48. spacer 1.2|140156|33|NZ_CP048279|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

aattat-ttttttgaattctttatattttttaga	CRISPR spacer
-ctgacattttttgaatcctttctattttttctc	Protospacer
  * *. **********.**** ********   

49. spacer 2.3|2091963|30|NZ_CP048279|PILER-CR matches to NC_048697 (Pseudomonas phage Littlefix, complete genome) position: , mismatch: 9, identity: 0.7

cggttgaagatattaaagatgagctagcca	CRISPR spacer
tggttgaagatattcaagatgaaatcatgg	Protospacer
.************* *******. * .. .

50. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to AP011616 (Thermus phage phiYS40 DNA, complete genome) position: , mismatch: 9, identity: 0.71

acggttgaagatattaaagatgagctagcca	CRISPR spacer
ttaattgaagaaattaaagatgagctttctt	Protospacer
 ...******* **************  *. 

51. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to DQ997624 (Thermus thermophilus phage YS40, complete genome) position: , mismatch: 9, identity: 0.71

acggttgaagatattaaagatgagctagcca	CRISPR spacer
ttaattgaagaaattaaagatgagctttctt	Protospacer
 ...******* **************  *. 

52. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to NC_008584 (Thermus phage phiYS40, complete genome) position: , mismatch: 9, identity: 0.71

acggttgaagatattaaagatgagctagcca	CRISPR spacer
ttaattgaagaaattaaagatgagctttctt	Protospacer
 ...******* **************  *. 

53. spacer 2.6|2091960|31|NZ_CP048279|CRT,CRISPRCasFinder matches to NZ_CP049807 (Acinetobacter pittii strain A1254 plasmid pA1254_1, complete sequence) position: , mismatch: 9, identity: 0.71

acggttgaagatattaaagatgagctagcca	CRISPR spacer
cagattgaagagattaaagaagagctattac	Protospacer
  *.******* ******** ****** .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12985 : 81108 56 Streptococcus_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_2 284026 : 319889 35 Enterococcus_phage(27.27%) holin,transposase NA
DBSCAN-SWA_3 421139 : 554347 107 Streptococcus_phage(20.83%) holin,transposase,protease NA
DBSCAN-SWA_4 751512 : 810910 45 Streptococcus_phage(33.33%) holin,transposase,tRNA,protease NA
DBSCAN-SWA_5 896347 : 904767 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 985293 : 995148 17 Staphylococcus_phage(53.33%) portal,head,terminase NA
DBSCAN-SWA_7 1201767 : 1274665 85 Staphylococcus_phage(72.06%) portal,transposase,integrase,tail,head,terminase,capsid,holin,protease attL 1204192:1204209|attR 1245713:1245730
DBSCAN-SWA_8 1291686 : 1315405 25 Staphylococcus_phage(95.0%) NA NA
DBSCAN-SWA_9 1319682 : 1327410 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_10 1448713 : 1458056 6 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_11 1600643 : 1609069 9 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_12 2509777 : 2572138 60 Bodo_saltans_virus(25.0%) transposase,protease NA
DBSCAN-SWA_13 2580461 : 2621225 49 Staphylococcus_phage(73.53%) tail,integrase,terminase,head,plate,holin attL 2577461:2577510|attR 2618351:2618400
DBSCAN-SWA_14 2793288 : 2833311 37 Staphylococcus_phage(31.25%) transposase,tRNA,integrase,bacteriocin,protease attL 2817528:2817543|attR 2834532:2834547
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage