CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP048334	Escherichia coli strain 10 plasmid p010_D, complete sequence	1 crisprs	NA	1	0
NZ_CP048331	Escherichia coli strain 10 plasmid p010_A, complete sequence	0 crisprs	NA	0	1
NZ_CP048335	Escherichia coli strain 10 plasmid p010_E, complete sequence	0 crisprs	NA	0	0
NZ_CP048332	Escherichia coli strain 10 plasmid p010_B-OXA181, complete sequence	0 crisprs	NA	0	0
NZ_CP048333	Escherichia coli strain 10 plasmid p010_C, complete sequence	0 crisprs	NA	0	0
NZ_CP048336	Escherichia coli strain 10 plasmid p010_F, complete sequence	0 crisprs	NA	0	0
NZ_CP048330	Escherichia coli strain 10 chromosome, complete genome	7 crisprs	csa3,PD-DExK,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	9	9

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048334_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048334_1

7410-7508

Orphan

Consensus_repeat	Method
CCATTTTGCTACTTTTTTGCTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048334_1

>merge|NZ_CP048334|1|7410-7508|CRISPRCasFinder
CATGTTTGCTATCTTTTTGCTACCATTTTGCTACTTTTTTGCTATCTCCAGAGTCTTCTGGTCTTTCGGTTGCTATCCTTTTGCTACTTTTTTGCTATC

>NZ_CP048334|1|1|7410-7508|CRISPRCasFinder
CATGTTTGCTATCTTTTTGCTACC	ATTTTGCTACTTTTTTGCTATCTCCAGAGTCTTCTGGTCTTTCGGTTGCTA
TCCTTTTGCTACTTTTTTGCTATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048334.1\|WP_048210132.1\|193_1648_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP048334.1\|WP_032242301.1\|3224_3509_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP048334.1\|WP_032242326.1\|7989_8307_-\|lipoprotein	unknown	unknown	unknown
NZ_CP048334.1\|WP_085948620.1\|4619_5833_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048334.1\|WP_032242304.1\|3987_4224_-\|MbeD-family-mobilization/exclusion-protein	unknown	unknown	gnl\|CDD\|113664
NZ_CP048334.1\|WP_162656976.1\|5816_6242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048334.1\|WP_072003336.1\|6671_6806_-\|replication-initiation-protein	unknown	unknown	unknown
NZ_CP048334.1\|WP_023224512.1\|8689_8821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048334.1\|WP_020936656.1\|11259_11628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048334.1\|WP_032242302.1\|3510_3843_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368831
NZ_CP048334.1\|WP_085947917.1\|9955_11229_+\|IS3-like-element-IS2-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP048334.1\|WP_151166972.1\|11712_12696_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997

Protein	Function_ID	Function_description	E-value
NZ_CP048334.1\|WP_048210132.1\|193_1648_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	5.90277e-97
NZ_CP048334.1\|WP_032242302.1\|3510_3843_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368831	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system. RelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, pfam04221.	1.09198e-07
NZ_CP048334.1\|WP_032242301.1\|3224_3509_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	8.80459e-14
NZ_CP048334.1\|WP_085947917.1\|9955_11229_+\|IS3-like-element-IS2-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	0
NZ_CP048334.1\|WP_085948620.1\|4619_5833_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.32159e-159
NZ_CP048334.1\|WP_032242304.1\|3987_4224_-\|MbeD-family-mobilization/exclusion-protein	gnl\|CDD\|113664	pfam04899, MbeD_MobD, MbeD/MobD like. The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilisation and transfer in the presence of conjugative plasmids.	4.09112e-11
NZ_CP048334.1\|WP_151166972.1\|11712_12696_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	2.00987e-37

>NZ_CP048334.1|WP_072003336.1|6671_6806_-|replication-initiation-protein
MHEPPVQSDRCVLSGNYRLESNPERHAKTPLAAAIGKQDVREMQ
>NZ_CP048334.1|WP_162656976.1|5816_6242_+|hypothetical-protein
MIWQPEFTDKTLSRKPGAVQFSYLKAMYHQSKIQAELKAQIHEQTTVNAICHHPESIEIIAVCSTDAYYRKRKDAAFLTTCSVLMRTLKDESVPMVLRKTAWRLLNERYQRIKLNQAYRIENFLLVADFEYALEEHDELAE
>NZ_CP048334.1|WP_085948620.1|4619_5833_+|IS3-family-transposase
MTKNTRFSPEVRQRAVRMVLESQSEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
>NZ_CP048334.1|WP_032242304.1|3987_4224_-|MbeD-family-mobilization/exclusion-protein
MTEMERQLLSALESLQTSYEQQKQAWQDSYSSLQRMFETTSQALERNDRVCLNLSNQVNALHEQVERLSSDLSRLTRS
>NZ_CP048334.1|WP_032242302.1|3510_3843_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSHAIEFIETTMFTRQIKQIATDDEIKELQKELIESPDKGDLIQKTGGLRKIRMATGNQGKSGSARVIYFLATAEVIYLVMAYPKSTKDSITDAEKAELKKLTQRLKDEV
>NZ_CP048334.1|WP_032242301.1|3224_3509_-|helix-turn-helix-domain-containing-protein
MSFFDELKASLEEAVEIKNGTKAPARVTRYELADVRAIRENLNITQSEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFDELAAH
>NZ_CP048334.1|WP_048210132.1|193_1648_+|lipopolysaccharide-biosynthesis-protein
MTALVSSFKWVGIGQLVKIATQLVSLFYLTHLIPPSSYGLLAMSSVVMNLASIFNDMGTGAAVIQRQEASIGFYNYIYRINIFTGLFVMLLVIITSPLIVVYFNTPELYPVLFLLAFSFPISSLTITHKAKLEKEMNFKVIIAIEIFSSLTGMVLAIVLANLGFGVYSLIFQTLTTISISTICFLKVSGLSLSLRIKNISHSDKSGVIGFSGYLLSFNLINYFSRNLDSILIGRFFSSAILGVYSIAYRIMLFPLQSLTLVFSRVFLPHLSKNINNTNNTNKQDYLNALKLILSLSAPLMLGLSATSFSFTRIFFDPKWHLLGDLLHWLAPTAIIQSALSTTGSVFMAYGKTRWLFFLGCIGAFLMGLSFIIGVHFDIKTLVYLYFFANLINSLPAFILLKNILKFSYIELVNVFFRTISPAFLMFLLIKVWQHFSFFKNASIDFSFNVALGIFSYIVFYTLFNFNEVVRTGVIHKLRCMTKLK
>NZ_CP048334.1|WP_032242326.1|7989_8307_-|lipoprotein
MKKIFILSAALIMAGCATKQYPQAVNVTGPESSAMDCKAVALEIAKTRSVQQEIEETGEFDGRTVLGFLGDFGIGNGMAKGEARKKAANRLNQLEALKAAKCADQ
>NZ_CP048334.1|WP_023224512.1|8689_8821_-|hypothetical-protein
MHEPPVQSDCCALSGNYRLESNPERHDKAPLAAATGNRISRAS
>NZ_CP048334.1|WP_085947917.1|9955_11229_+|IS3-like-element-IS2-family-transposase
MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
>NZ_CP048334.1|WP_020936656.1|11259_11628_+|hypothetical-protein
MANFNPGPRTAIAAVRDSKNDIETWKKNGIRREEIVTVLNERYGLNISLVAFDKALYRLRKSTDEPSLADVDSVSAAETNFSEASGPDNGFFLSGNDFMRAEEESQRVVESFRDSLSRKKGF
>NZ_CP048334.1|WP_151166972.1|11712_12696_+|glycosyltransferase-family-2-protein
MKKKFSIIVPVYNVEKYLRECIQSVLDQDFNDYEIICVNDGSTDGSLDIILSFDDQRIKVINQENKGLSVARNVAIESSTGEYIWFLDSDDKISHGSLKLIDKITNEKNYGIIFFNTHVFFDTPELKKKGWHDYKRSTFGEMDALTFFEKEMTNKKLIVSACCYVFRRELLNGNAFIPHIYHEDNHFIATLIFDNYSTICLSLDEALYLRRVRNDSIMTSKKSMRHIIGYSTCIDELTKYKKTKGIQNKSFDRFVNGMVLSLFSIAETIKTKEAMNYVARYKKHPDLSFKDRALINYPLIKKTYLKLKNGKVFNYLRNGIINKKSNP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP042340	Escherichia coli strain GZ04-0086 plasmid p13k-GZ04, complete sequence	3066-3116	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	297654-297704	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP019003	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_3, complete sequence	5213-5263	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP041285	Escherichia coli strain 54 plasmid p54-p2, complete sequence	3619-3669	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_KT074362	Escherichia coli strain GDP53 plasmid pSC137, complete sequence	1289-1339	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP048334	Escherichia coli strain 10 plasmid p010_D, complete sequence	7434-7484	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	KY612498	Escherichia coli plasmid pEC4103, complete sequence	1289-1339	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	KY612499	Escherichia coli plasmid pEC5106, complete sequence	1289-1339	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	KY612500	Escherichia coli plasmid pEC6413, complete sequence	1289-1339	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP047457	Escherichia coli strain ZF31 plasmid pZF31-4kb, complete sequence	2050-2100	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP047463	Escherichia coli strain ZF34 plasmid pZF34-4kb, complete sequence	1544-1594	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NC_022197	Proteus mirabilis strain BB1091 plasmid pB1022, complete sequence	614-664	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP042590	Escherichia coli strain PK6 plasmid pRHEcCUB-2, complete sequence	8295-8345	1.0
NZ_CP048334_1	1.1\|7434\|51\|NZ_CP048334\|CRISPRCasFinder	7434-7484	51	NZ_CP041445	Escherichia coli strain YPE10 plasmid pYPE10-4k, complete sequence	2704-2754	1.0

1. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP042340 (Escherichia coli strain GZ04-0086 plasmid p13k-GZ04, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

2. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

3. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP019003 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_3, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

4. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP041285 (Escherichia coli strain 54 plasmid p54-p2, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

5. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_KT074362 (Escherichia coli strain GDP53 plasmid pSC137, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

6. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP048334 (Escherichia coli strain 10 plasmid p010_D, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

7. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to KY612498 (Escherichia coli plasmid pEC4103, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

8. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to KY612499 (Escherichia coli plasmid pEC5106, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

9. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to KY612500 (Escherichia coli plasmid pEC6413, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

10. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP047457 (Escherichia coli strain ZF31 plasmid pZF31-4kb, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

11. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP047463 (Escherichia coli strain ZF34 plasmid pZF34-4kb, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

12. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NC_022197 (Proteus mirabilis strain BB1091 plasmid pB1022, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

13. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP042590 (Escherichia coli strain PK6 plasmid pRHEcCUB-2, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

14. spacer 1.1|7434|51|NZ_CP048334|CRISPRCasFinder matches to NZ_CP041445 (Escherichia coli strain YPE10 plasmid pYPE10-4k, complete sequence) position: , mismatch: 0, identity: 1.0

attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	CRISPR spacer
attttgctacttttttgctatctccagagtcttctggtctttcggttgcta	Protospacer
***************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 47977

Escherichia_phage(31.25%)

transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066953.1\|1262_2003_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_023141670.1\|2123_2249_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|3448_4618_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|4813_5107_-	hypothetical protein	NA	NA	NA	NA
WP_000421272.1\|5212_5488_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001387467.1\|5487_5772_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000562172.1\|6376_7129_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_001022265.1\|7174_8140_-	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_000710783.1\|8172_8553_-	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_001077068.1\|8577_9468_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_000796505.1\|9700_9895_-	hypothetical protein	NA	NA	NA	NA
WP_000338039.1\|10439_11318_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_001271561.1\|11307_12195_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_000922702.1\|12205_13030_+	phosphodiesterase	NA	NA	NA	NA
WP_000950177.1\|13035_14109_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	33.7
WP_000476108.1\|14101_15412_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001067855.1\|17331_18036_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000874189.1\|18745_19231_-	hypothetical protein	NA	NA	NA	NA
WP_001267177.1\|19255_19741_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_000117262.1\|19727_20423_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-29	38.9
WP_000729220.1\|20427_21558_-	ABC transporter permease	NA	NA	NA	NA
WP_000964653.1\|21547_22831_-	ABC transporter permease	NA	NA	NA	NA
WP_000119836.1\|22833_24213_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_000178050.1\|24316_24844_-	iron transporter	NA	NA	NA	NA
WP_000118029.1\|24884_26771_-	FTR1 family iron permease	NA	NA	NA	NA
WP_012372823.1\|27117_27933_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_001067855.1\|29891_30596_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001553864.1\|30486_30816_-	recombinase family protein	M9Q1K0	Clostridium_phage	6.9e-09	55.6
WP_000454193.1\|30941_31292_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|31494_32508_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|32665_33139_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|33269_34058_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|34263_34611_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|34604_35444_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|35571_35775_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|35930_37136_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|37146_37452_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|37678_38443_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|38935_39520_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|39519_40758_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|40754_41660_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|41781_42486_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000978817.1\|42856_43318_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	3.6e-19	37.1
WP_100134641.1\|43610_44939_-	methyl-accepting chemotaxis protein	A0A1B0VAH3	Salmonella_phage	1.6e-51	100.0
WP_001067855.1\|44989_45694_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001235713.1\|46376_46934_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|47116_47977_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP048330

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048330_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_1

1004159-1004552

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRT

6 spacers

The CRISPR arrays of NZ_CP048330_1

>merge|NZ_CP048330|1|1004159-1004552|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAAAACCGGGCAATCGCAAAAAGGCGTAATGTGTTCCCCGCGCCAGCGGGGATAAACCTGTGTTTGCGGCATTAACGCTCACCAGTATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTGGTCATGGGTGCTGCTGTTGCAGAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCAGATACACGGCTTTGTATTCCGTGCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACC

>NZ_CP048330|1|1|1004159-1004552|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>NZ_CP048330|1|1|1004159-1004552|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>NZ_CP048330|1|1|1004159-1004552|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGTATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_001071648.1\|993306_994098_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP048330.1\|WP_000059306.1\|1009147_1010602_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP048330.1\|WP_162656828.1\|1013794_1014370_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP048330.1\|WP_000907716.1\|1012753_1013647_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP048330.1\|WP_001199973.1\|1003147_1003819_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP048330.1\|WP_000109529.1\|1014386_1014647_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP048330.1\|WP_001288228.1\|1002868_1003009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048330.1\|WP_000210878.1\|994325_995963_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP048330.1\|WP_001164544.1\|1006696_1007974_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP048330.1\|WP_000254738.1\|992900_993236_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP048330.1\|WP_162656826.1\|996050_997349_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP048330.1\|WP_000021334.1\|1008292_1009078_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP048330.1\|WP_000039688.1\|1005191_1006670_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP048330.1\|WP_000147666.1\|1010623_1012033_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP048330.1\|WP_000088605.1\|999202_999826_-\|tetracycline-resistance-transcriptional-repressor-TetR(B)	unknown	unknown	gnl\|CDD\|172294
NZ_CP048330.1\|WP_000428546.1\|1001225_1001819_-\|tetracyline-resistance-associated-transcriptional-repressor-TetC	unknown	unknown	gnl\|CDD\|224228
NZ_CP048330.1\|WP_001299652.1\|1012010_1012790_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP048330.1\|WP_001089068.1\|999907_1001113_+\|tetracycline-efflux-MFS-transporter-Tet(B)	unknown	unknown	gnl\|CDD\|340946
NZ_CP048330.1\|WP_001301334.1\|1014637_1015909_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP048330.1\|WP_000581937.1\|992652_992901_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_001071648.1\|993306_994098_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP048330.1\|WP_000907716.1\|1012753_1013647_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.66577e-90
NZ_CP048330.1\|WP_162656828.1\|1013794_1014370_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.11886e-86
NZ_CP048330.1\|WP_001199973.1\|1003147_1003819_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP048330.1\|WP_162656826.1\|996050_997349_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP048330.1\|WP_000109529.1\|1014386_1014647_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
NZ_CP048330.1\|WP_000210878.1\|994325_995963_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP048330.1\|WP_000059306.1\|1009147_1010602_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.41244e-83
NZ_CP048330.1\|WP_000254738.1\|992900_993236_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP048330.1\|WP_001164544.1\|1006696_1007974_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.60446e-29
NZ_CP048330.1\|WP_000021334.1\|1008292_1009078_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.96451e-139
NZ_CP048330.1\|WP_000039688.1\|1005191_1006670_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.27376e-109
NZ_CP048330.1\|WP_000147666.1\|1010623_1012033_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP048330.1\|WP_000088605.1\|999202_999826_-\|tetracycline-resistance-transcriptional-repressor-TetR(B)	gnl\|CDD\|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	2.42322e-139
NZ_CP048330.1\|WP_000428546.1\|1001225_1001819_-\|tetracyline-resistance-associated-transcriptional-repressor-TetC	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.58084e-14
NZ_CP048330.1\|WP_001299652.1\|1012010_1012790_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_CP048330.1\|WP_001089068.1\|999907_1001113_+\|tetracycline-efflux-MFS-transporter-Tet(B)	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.21806e-178
NZ_CP048330.1\|WP_001301334.1\|1014637_1015909_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	5.03655e-125
NZ_CP048330.1\|WP_000581937.1\|992652_992901_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48

>NZ_CP048330.1|WP_001199973.1|1003147_1003819_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP048330.1|WP_001288228.1|1002868_1003009_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>NZ_CP048330.1|WP_000428546.1|1001225_1001819_-|tetracyline-resistance-associated-transcriptional-repressor-TetC
MENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFKNKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK
>NZ_CP048330.1|WP_001089068.1|999907_1001113_+|tetracycline-efflux-MFS-transporter-Tet(B)
MNSSTKIALVITLLDAMGIGLIMPVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSPFFIAALLNIVAFLVVMFWFRETKNTRDNTDTEVGVETQSNSVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSLAGLGLLHSVFQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAFISEGWLVFPVLILLAGGGIALPALQGVMSIQTKSHQQGALQGLLVSLTNATGVIGPLLFAVIYNHSLPIWDGWIWIIGLAFYCIIILLSMTFMLTPQAQGSKQETSA
>NZ_CP048330.1|WP_000088605.1|999202_999826_-|tetracycline-resistance-transcriptional-repressor-TetR(B)
MSRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAKSFRCALLSHRDGAKVHLGTRPTEKQYETLENQLAFLCQQGFSLENALYALSAVGHFTLGCVLEDQEHQVAKEERETPTTDSMPPLLRQAIELFDHQGAEPAFLFGLELIICGLEKQLKCESGS
>NZ_CP048330.1|WP_162656826.1|996050_997349_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGVANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP048330.1|WP_000210878.1|994325_995963_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP048330.1|WP_001071648.1|993306_994098_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP048330.1|WP_000254738.1|992900_993236_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP048330.1|WP_000581937.1|992652_992901_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP048330.1|WP_000039688.1|1005191_1006670_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP048330.1|WP_001164544.1|1006696_1007974_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP048330.1|WP_000021334.1|1008292_1009078_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP048330.1|WP_000059306.1|1009147_1010602_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNIVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP048330.1|WP_000147666.1|1010623_1012033_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP048330.1|WP_001299652.1|1012010_1012790_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP048330.1|WP_000907716.1|1012753_1013647_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP048330.1|WP_162656828.1|1013794_1014370_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISIKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP048330.1|WP_000109529.1|1014386_1014647_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP048330.1|WP_001301334.1|1014637_1015909_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP048330_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_2

1030103-1030619

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP048330_2

>merge|NZ_CP048330|2|1030103-1030619|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGGACTCACCCCGAAAGAGATTGCCAGCCAGCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGCTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCACCAGCGCGTTTTTTGCCGGGGCCATAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGAACTCACCACGATTGTTAATATGGACGATGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGCGCATGACCGTAAACATTATCCCCCGGGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTCAGACATAGGTGGAATGATGGACTACGAGTTCCCCGCGTTAGCGGGGATAAACCGCCCGGTAGCCAGGTTTGCAACGCCTGAACCGAGAGTTCCCCGCGCCAGCAGGGATAAACCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP048330|2|2|1030103-1030375|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP048330|2|2|1030103-1030619|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP048330|2|2|1030103-1030619|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCACCCCGAAAGAGATTGCCAGCCAGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAACTCACCACGATTGTTAATATGGACGAT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGCGCATGACCGTAAACATTATCCCCCGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_001381369.1\|1029712_1029997_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP048330.1\|WP_000490428.1\|1030701_1031739_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP048330.1\|WP_000281400.1\|1028178_1028778_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP048330.1\|WP_001295182.1\|1038045_1038807_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP048330.1\|WP_000568943.1\|1037015_1038065_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP048330.1\|WP_000064450.1\|1026423_1027515_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP048330.1\|WP_071532149.1\|1024451_1025936_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP048330.1\|WP_001290679.1\|1018466_1020179_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP048330.1\|WP_000372108.1\|1031990_1032899_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP048330.1\|WP_000433154.1\|1021346_1024013_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP048330.1\|WP_001219242.1\|1036539_1037019_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP048330.1\|WP_000517476.1\|1035499_1035811_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP048330.1\|WP_001173673.1\|1034327_1034933_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP048330.1\|WP_113975488.1\|1028793_1029711_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP048330.1\|WP_000246138.1\|1035829_1036540_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP048330.1\|WP_000039850.1\|1020253_1020988_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP048330.1\|WP_001246104.1\|1034982_1035306_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP048330.1\|WP_001334996.1\|1027517_1028192_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP048330.1\|WP_001090361.1\|1032900_1034328_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP048330.1\|WP_000752800.1\|1025928_1026411_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_001381369.1\|1029712_1029997_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
NZ_CP048330.1\|WP_000490428.1\|1030701_1031739_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP048330.1\|WP_000281400.1\|1028178_1028778_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.81669e-101
NZ_CP048330.1\|WP_001295182.1\|1038045_1038807_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP048330.1\|WP_000568943.1\|1037015_1038065_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP048330.1\|WP_000064450.1\|1026423_1027515_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154
NZ_CP048330.1\|WP_071532149.1\|1024451_1025936_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP048330.1\|WP_001290679.1\|1018466_1020179_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP048330.1\|WP_000372108.1\|1031990_1032899_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP048330.1\|WP_000433154.1\|1021346_1024013_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP048330.1\|WP_001219242.1\|1036539_1037019_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP048330.1\|WP_000517476.1\|1035499_1035811_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP048330.1\|WP_001173673.1\|1034327_1034933_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP048330.1\|WP_113975488.1\|1028793_1029711_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.16729e-159
NZ_CP048330.1\|WP_000246138.1\|1035829_1036540_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP048330.1\|WP_000039850.1\|1020253_1020988_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NZ_CP048330.1\|WP_001246104.1\|1034982_1035306_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP048330.1\|WP_001334996.1\|1027517_1028192_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103
NZ_CP048330.1\|WP_001090361.1\|1032900_1034328_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP048330.1\|WP_000752800.1\|1025928_1026411_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33

>NZ_CP048330.1|WP_001381369.1|1029712_1029997_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>NZ_CP048330.1|WP_113975488.1|1028793_1029711_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDSAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP048330.1|WP_000281400.1|1028178_1028778_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP048330.1|WP_001334996.1|1027517_1028192_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP048330.1|WP_000064450.1|1026423_1027515_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP048330.1|WP_000752800.1|1025928_1026411_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP048330.1|WP_071532149.1|1024451_1025936_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP048330.1|WP_000433154.1|1021346_1024013_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQACLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>NZ_CP048330.1|WP_000039850.1|1020253_1020988_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP048330.1|WP_001290679.1|1018466_1020179_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP048330.1|WP_000490428.1|1030701_1031739_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP048330.1|WP_000372108.1|1031990_1032899_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP048330.1|WP_001090361.1|1032900_1034328_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP048330.1|WP_001173673.1|1034327_1034933_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP048330.1|WP_001246104.1|1034982_1035306_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP048330.1|WP_000517476.1|1035499_1035811_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP048330.1|WP_000246138.1|1035829_1036540_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP048330.1|WP_001219242.1|1036539_1037019_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP048330.1|WP_000568943.1|1037015_1038065_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP048330.1|WP_001295182.1|1038045_1038807_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP048330_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_3

1555821-1555938

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048330_3

>merge|NZ_CP048330|3|1555821-1555938|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>NZ_CP048330|3|3|1555821-1555938|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_000012305.1\|1566463_1568152_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP048330.1\|WP_001225852.1\|1574964_1575741_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP048330.1\|WP_001075164.1\|1555957_1558243_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP048330.1\|WP_001281218.1\|1563687_1566315_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP048330.1\|WP_000779105.1\|1552096_1553173_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP048330.1\|WP_001295211.1\|1568148_1568772_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP048330.1\|WP_001209927.1\|1547583_1548843_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP048330.1\|WP_001104551.1\|1573310_1574960_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP048330.1\|WP_000990765.1\|1562818_1563541_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP048330.1\|WP_000786547.1\|1575814_1576999_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP048330.1\|WP_001220077.1\|1558938_1562691_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP048330.1\|WP_001000379.1\|1546396_1547587_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP048330.1\|WP_000948731.1\|1550733_1552092_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP048330.1\|WP_000857257.1\|1548832_1550461_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP048330.1\|WP_000301050.1\|1553635_1554286_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP048330.1\|WP_001360244.1\|1568915_1573310_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP048330.1\|WP_000135040.1\|1554339_1554594_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP048330.1\|WP_000140472.1\|1545304_1546204_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP048330.1\|WP_000332037.1\|1554593_1555724_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP048330.1\|WP_000150333.1\|1545106_1545292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_000012305.1\|1566463_1568152_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP048330.1\|WP_001225852.1\|1574964_1575741_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
NZ_CP048330.1\|WP_001075164.1\|1555957_1558243_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP048330.1\|WP_001281218.1\|1563687_1566315_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP048330.1\|WP_000779105.1\|1552096_1553173_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP048330.1\|WP_001295211.1\|1568148_1568772_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP048330.1\|WP_001209927.1\|1547583_1548843_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP048330.1\|WP_001104551.1\|1573310_1574960_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	8.04949e-127
NZ_CP048330.1\|WP_000990765.1\|1562818_1563541_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
NZ_CP048330.1\|WP_000786547.1\|1575814_1576999_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP048330.1\|WP_001220077.1\|1558938_1562691_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP048330.1\|WP_001000379.1\|1546396_1547587_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP048330.1\|WP_000948731.1\|1550733_1552092_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP048330.1\|WP_000857257.1\|1548832_1550461_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP048330.1\|WP_000301050.1\|1553635_1554286_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
NZ_CP048330.1\|WP_001360244.1\|1568915_1573310_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP048330.1\|WP_000135040.1\|1554339_1554594_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP048330.1\|WP_000140472.1\|1545304_1546204_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP048330.1\|WP_000332037.1\|1554593_1555724_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP048330.1\|WP_000150333.1\|1545106_1545292_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.35852e-30

>NZ_CP048330.1|WP_000332037.1|1554593_1555724_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP048330.1|WP_000135040.1|1554339_1554594_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP048330.1|WP_000301050.1|1553635_1554286_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP048330.1|WP_000779105.1|1552096_1553173_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP048330.1|WP_000948731.1|1550733_1552092_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>NZ_CP048330.1|WP_000857257.1|1548832_1550461_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP048330.1|WP_001209927.1|1547583_1548843_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP048330.1|WP_001000379.1|1546396_1547587_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP048330.1|WP_000140472.1|1545304_1546204_-|ISNCY-family-transposase
MTESTASSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>NZ_CP048330.1|WP_000150333.1|1545106_1545292_-|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANNH
>NZ_CP048330.1|WP_001075164.1|1555957_1558243_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP048330.1|WP_001220077.1|1558938_1562691_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP048330.1|WP_000990765.1|1562818_1563541_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP048330.1|WP_001281218.1|1563687_1566315_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP048330.1|WP_000012305.1|1566463_1568152_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP048330.1|WP_001295211.1|1568148_1568772_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP048330.1|WP_001360244.1|1568915_1573310_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP048330.1|WP_001104551.1|1573310_1574960_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTWARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP048330.1|WP_001225852.1|1574964_1575741_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP048330.1|WP_000786547.1|1575814_1576999_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: NZ_CP048330_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_4

3240030-3240174

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048330_4

>merge|NZ_CP048330|4|3240030-3240174|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>NZ_CP048330|4|4|3240030-3240174|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_000103023.1\|3236236_3236890_+\|DUF550-domain-containing-protein	unknown	unknown	gnl\|CDD\|367945
NZ_CP048330.1\|WP_000763363.1\|3235650_3235872_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
NZ_CP048330.1\|WP_097480736.1\|3235270_3235552_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048330.1\|WP_000679972.1\|3245386_3246340_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP048330.1\|WP_000815435.1\|3246380_3247376_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP048330.1\|WP_000593938.1\|3240197_3242459_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP048330.1\|WP_000723652.1\|3244150_3245203_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP048330.1\|WP_000548514.1\|3235068_3235260_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP048330.1\|WP_000891515.1\|3251039_3251189_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_CP048330.1\|WP_162656920.1\|3248349_3249408_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP048330.1\|WP_001303849.1\|3237279_3237498_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
NZ_CP048330.1\|WP_001091569.1\|3238680_3239964_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP048330.1\|WP_000604034.1\|3249410_3250100_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP048330.1\|WP_000682305.1\|3234913_3235096_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP048330.1\|WP_001277770.1\|3236986_3237166_+\|Eag-protein	unknown	unknown	gnl\|CDD\|106959
NZ_CP048330.1\|WP_000533643.1\|3237475_3238546_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NZ_CP048330.1\|WP_001289872.1\|3235868_3236240_+\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP048330.1\|WP_000101984.1\|3250099_3250873_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP048330.1\|WP_001381038.1\|3247530_3248349_+\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP048330.1\|WP_001036475.1\|3242641_3244075_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_000103023.1\|3236236_3236890_+\|DUF550-domain-containing-protein	gnl\|CDD\|367945	pfam04447, DUF550, Protein of unknown function (DUF550). This family is found in a range of Proteobacteria and a few P-22 dsDNA virus particles. The function is currently not known.	1.66922e-44
NZ_CP048330.1\|WP_000763363.1\|3235650_3235872_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	7.65789e-27
NZ_CP048330.1\|WP_000679972.1\|3245386_3246340_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP048330.1\|WP_000815435.1\|3246380_3247376_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP048330.1\|WP_000593938.1\|3240197_3242459_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP048330.1\|WP_000723652.1\|3244150_3245203_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP048330.1\|WP_000548514.1\|3235068_3235260_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	4.56277e-24
NZ_CP048330.1\|WP_000891515.1\|3251039_3251189_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP048330.1\|WP_162656920.1\|3248349_3249408_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP048330.1\|WP_001303849.1\|3237279_3237498_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	8.49552e-35
NZ_CP048330.1\|WP_001091569.1\|3238680_3239964_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP048330.1\|WP_000604034.1\|3249410_3250100_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
NZ_CP048330.1\|WP_000682305.1\|3234913_3235096_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	7.54204e-36
NZ_CP048330.1\|WP_001277770.1\|3236986_3237166_+\|Eag-protein	gnl\|CDD\|106959	PHA00626, PHA00626, hypothetical protein.	3.02558e-26
NZ_CP048330.1\|WP_000533643.1\|3237475_3238546_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	4.69412e-62
NZ_CP048330.1\|WP_001289872.1\|3235868_3236240_+\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	8.29922e-16
NZ_CP048330.1\|WP_000101984.1\|3250099_3250873_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP048330.1\|WP_001381038.1\|3247530_3248349_+\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP048330.1\|WP_001036475.1\|3242641_3244075_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0

>NZ_CP048330.1|WP_001091569.1|3238680_3239964_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP048330.1|WP_000533643.1|3237475_3238546_+|tyrosine-type-recombinase/integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>NZ_CP048330.1|WP_001303849.1|3237279_3237498_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
>NZ_CP048330.1|WP_001277770.1|3236986_3237166_+|Eag-protein
MSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNKFVKINKEREGNEKS
>NZ_CP048330.1|WP_000103023.1|3236236_3236890_+|DUF550-domain-containing-protein
MSTFTKEWLQNTITSIESARDEMPFGLDNDQAHMLTAFKIALASLEREQIRHEHAKWSDSTFGCVGPIGPLKHLSKEALEAAAEPDDLSEWADMQFLLWDAQRRAGISDAEITAAMENKLKINMERQWPEPKDGEPRLHIKERGNSPVTPGGWISCSDRMPEDTKMLLAFSQGEIVAAYWNWVVNPIDYKKYRAFTYLSGNILDDVTHWMPLPEPPL
>NZ_CP048330.1|WP_001289872.1|3235868_3236240_+|ead/Ea22-like-family-protein
MSEINSQALREAAEQAMHDDWGFDADLFHELVTPSIVLELLDERERNQQYIKRRDQENEDIALTVGKLRVELEGKDRRITEVTMWIKRLSSSLKNAKPDSKLPDDAMIWLNNEGLTSIEDILR
>NZ_CP048330.1|WP_000763363.1|3235650_3235872_+|TraR/DksA-family-transcriptional-regulator
MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQEDLELISKQRGSK
>NZ_CP048330.1|WP_097480736.1|3235270_3235552_+|hypothetical-protein
MHFSGSGLHILCAYACRHGTCSVTHQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
>NZ_CP048330.1|WP_000548514.1|3235068_3235260_+|DUF1382-family-protein
MHKASPVELRTCIEMAHSLAQIGVRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERDQV
>NZ_CP048330.1|WP_000682305.1|3234913_3235096_+|DUF1317-domain-containing-protein
MKHPHDNIRVGAITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAVCTKHLLLS
>NZ_CP048330.1|WP_000593938.1|3240197_3242459_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_CP048330.1|WP_001036475.1|3242641_3244075_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP048330.1|WP_000723652.1|3244150_3245203_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP048330.1|WP_000679972.1|3245386_3246340_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP048330.1|WP_000815435.1|3246380_3247376_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP048330.1|WP_001381038.1|3247530_3248349_+|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDSFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP048330.1|WP_162656920.1|3248349_3249408_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGSTAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>NZ_CP048330.1|WP_000604034.1|3249410_3250100_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP048330.1|WP_000101984.1|3250099_3250873_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>NZ_CP048330.1|WP_000891515.1|3251039_3251189_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: NZ_CP048330_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_5

3480386-3480482

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048330_5

>merge|NZ_CP048330|5|3480386-3480482|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>NZ_CP048330|5|5|3480386-3480482|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_000703900.1\|3485484_3486534_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP048330.1\|WP_001143542.1\|3475294_3475816_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP048330.1\|WP_001310618.1\|3486555_3487791_+\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP048330.1\|WP_000855378.1\|3480515_3481409_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP048330.1\|WP_000815571.1\|3479253_3480321_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP048330.1\|WP_000006900.1\|3491339_3492701_-\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP048330.1\|WP_025693488.1\|3482231_3483491_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP048330.1\|WP_000729160.1\|3474106_3474973_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP048330.1\|WP_025693487.1\|3473111_3473636_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP048330.1\|WP_001333621.1\|3488814_3489960_-\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP048330.1\|WP_000580822.1\|3483500_3485168_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP048330.1\|WP_000255997.1\|3477410_3477905_+\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP048330.1\|WP_001295318.1\|3478747_3479257_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP048330.1\|WP_000988364.1\|3472199_3472892_-\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP048330.1\|WP_000540997.1\|3487801_3488587_+\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP048330.1\|WP_000190288.1\|3474974_3475187_+\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP048330.1\|WP_000212247.1\|3477907_3478630_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP048330.1\|WP_001302767.1\|3489981_3491283_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP048330.1\|WP_000152519.1\|3481405_3482221_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP048330.1\|WP_000912385.1\|3475851_3477237_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_000703900.1\|3485484_3486534_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP048330.1\|WP_001143542.1\|3475294_3475816_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	4.92496e-31
NZ_CP048330.1\|WP_001310618.1\|3486555_3487791_+\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP048330.1\|WP_000855378.1\|3480515_3481409_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP048330.1\|WP_000815571.1\|3479253_3480321_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
NZ_CP048330.1\|WP_000006900.1\|3491339_3492701_-\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP048330.1\|WP_025693488.1\|3482231_3483491_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.02476e-131
NZ_CP048330.1\|WP_000729160.1\|3474106_3474973_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP048330.1\|WP_025693487.1\|3473111_3473636_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	1.18743e-85
NZ_CP048330.1\|WP_001333621.1\|3488814_3489960_-\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP048330.1\|WP_000580822.1\|3483500_3485168_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP048330.1\|WP_000255997.1\|3477410_3477905_+\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP048330.1\|WP_001295318.1\|3478747_3479257_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP048330.1\|WP_000988364.1\|3472199_3472892_-\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP048330.1\|WP_000540997.1\|3487801_3488587_+\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
NZ_CP048330.1\|WP_000190288.1\|3474974_3475187_+\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP048330.1\|WP_000212247.1\|3477907_3478630_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
NZ_CP048330.1\|WP_001302767.1\|3489981_3491283_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP048330.1\|WP_000152519.1\|3481405_3482221_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
NZ_CP048330.1\|WP_000912385.1\|3475851_3477237_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0

>NZ_CP048330.1|WP_000815571.1|3479253_3480321_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP048330.1|WP_001295318.1|3478747_3479257_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP048330.1|WP_000212247.1|3477907_3478630_+|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP048330.1|WP_000255997.1|3477410_3477905_+|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP048330.1|WP_000912385.1|3475851_3477237_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP048330.1|WP_001143542.1|3475294_3475816_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP048330.1|WP_000190288.1|3474974_3475187_+|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP048330.1|WP_000729160.1|3474106_3474973_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP048330.1|WP_025693487.1|3473111_3473636_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAASADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP048330.1|WP_000988364.1|3472199_3472892_-|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>NZ_CP048330.1|WP_000855378.1|3480515_3481409_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP048330.1|WP_000152519.1|3481405_3482221_-|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP048330.1|WP_025693488.1|3482231_3483491_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVDAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP048330.1|WP_000580822.1|3483500_3485168_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP048330.1|WP_000703900.1|3485484_3486534_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP048330.1|WP_001310618.1|3486555_3487791_+|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP048330.1|WP_000540997.1|3487801_3488587_+|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP048330.1|WP_001333621.1|3488814_3489960_-|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP048330.1|WP_001302767.1|3489981_3491283_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP048330.1|WP_000006900.1|3491339_3492701_-|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ

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Crispr_ID: NZ_CP048330_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_6

3620526-3620670

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048330_6

>merge|NZ_CP048330|6|3620526-3620670|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>NZ_CP048330|6|6|3620526-3620670|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_001221319.1\|3614793_3615996_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP048330.1\|WP_001009885.1\|3606827_3607409_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
NZ_CP048330.1\|WP_001295329.1\|3609386_3610760_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP048330.1\|WP_000893623.1\|3612561_3613857_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP048330.1\|WP_000698951.1\|3615992_3619139_+\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_CP048330.1\|WP_001298537.1\|3621726_3622638_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_CP048330.1\|WP_001326926.1\|3619264_3620449_+\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
NZ_CP048330.1\|WP_001295331.1\|3626101_3626911_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP048330.1\|WP_000113933.1\|3613914_3614604_-\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP048330.1\|WP_001276420.1\|3623640_3624318_-\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP048330.1\|WP_000193393.1\|3624816_3625341_-\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP048330.1\|WP_001219309.1\|3620693_3621602_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP048330.1\|WP_120795376.1\|3622715_3622799_-\|protein-YkiD	unknown	unknown	unknown
NZ_CP048330.1\|WP_000158159.1\|3625523_3625982_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP048330.1\|WP_001310597.1\|3607413_3609231_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP048330.1\|WP_001142439.1\|3624575_3624767_-\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_CP048330.1\|WP_000941942.1\|3623284_3623569_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP048330.1\|WP_000484048.1\|3626927_3628043_-\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP048330.1\|WP_001266503.1\|3605664_3606735_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP048330.1\|WP_000149639.1\|3610835_3612155_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_001221319.1\|3614793_3615996_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP048330.1\|WP_001009885.1\|3606827_3607409_+\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
NZ_CP048330.1\|WP_001295329.1\|3609386_3610760_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP048330.1\|WP_000893623.1\|3612561_3613857_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP048330.1\|WP_000698951.1\|3615992_3619139_+\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP048330.1\|WP_001298537.1\|3621726_3622638_+\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_CP048330.1\|WP_001326926.1\|3619264_3620449_+\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
NZ_CP048330.1\|WP_001295331.1\|3626101_3626911_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_CP048330.1\|WP_000113933.1\|3613914_3614604_-\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
NZ_CP048330.1\|WP_001276420.1\|3623640_3624318_-\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_CP048330.1\|WP_000193393.1\|3624816_3625341_-\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_CP048330.1\|WP_001219309.1\|3620693_3621602_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP048330.1\|WP_000158159.1\|3625523_3625982_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_CP048330.1\|WP_001310597.1\|3607413_3609231_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP048330.1\|WP_001142439.1\|3624575_3624767_-\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_CP048330.1\|WP_000941942.1\|3623284_3623569_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_CP048330.1\|WP_000484048.1\|3626927_3628043_-\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP048330.1\|WP_001266503.1\|3605664_3606735_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP048330.1\|WP_000149639.1\|3610835_3612155_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0

>NZ_CP048330.1|WP_001326926.1|3619264_3620449_+|MFS-transporter-AraJ
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>NZ_CP048330.1|WP_000698951.1|3615992_3619139_+|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_CP048330.1|WP_001221319.1|3614793_3615996_+|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_CP048330.1|WP_000113933.1|3613914_3614604_-|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_CP048330.1|WP_000893623.1|3612561_3613857_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_CP048330.1|WP_000149639.1|3610835_3612155_-|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_CP048330.1|WP_001295329.1|3609386_3610760_-|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_CP048330.1|WP_001310597.1|3607413_3609231_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_CP048330.1|WP_001009885.1|3606827_3607409_+|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_CP048330.1|WP_001266503.1|3605664_3606735_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>NZ_CP048330.1|WP_001219309.1|3620693_3621602_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_CP048330.1|WP_001298537.1|3621726_3622638_+|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_CP048330.1|WP_120795376.1|3622715_3622799_-|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_CP048330.1|WP_000941942.1|3623284_3623569_-|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_CP048330.1|WP_001276420.1|3623640_3624318_-|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_CP048330.1|WP_001142439.1|3624575_3624767_-|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_CP048330.1|WP_000193393.1|3624816_3625341_-|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_CP048330.1|WP_000158159.1|3625523_3625982_-|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_CP048330.1|WP_001295331.1|3626101_3626911_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_CP048330.1|WP_000484048.1|3626927_3628043_-|diguanylate-cyclase-AdrA
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA

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Crispr_ID: NZ_CP048330_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048330_7

3984152-3984287

Orphan

Consensus_repeat	Method
TGAATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP048330_7

>merge|NZ_CP048330|7|3984152-3984287|PILER-CR
TTAATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACACGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP048330|7|3|3984152-3984287|PILER-CR
TTAATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCC
TCACCAATATTGAAAACACG	GCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGA
TCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048330.1\|WP_000257192.1\|3975244_3976087_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP048330.1\|WP_000787103.1\|3984536_3986051_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP048330.1\|WP_001352305.1\|3990294_3991080_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP048330.1\|WP_000543594.1\|3997290_3998112_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP048330.1\|WP_001352306.1\|3995686_3996835_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP048330.1\|WP_000377098.1\|3976835_3978698_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP048330.1\|WP_000624375.1\|3976164_3976644_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP048330.1\|WP_001287715.1\|3981000_3982287_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP048330.1\|WP_000203741.1\|3980716_3981004_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP048330.1\|WP_000333125.1\|3991794_3992190_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP048330.1\|WP_000347117.1\|3986081_3987224_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP048330.1\|WP_000263451.1\|3988665_3990186_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP048330.1\|WP_001554682.1\|3983293_3984064_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP048330.1\|WP_001126340.1\|3992450_3995669_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP048330.1\|WP_000610901.1\|3974860_3975238_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP048330.1\|WP_000600725.1\|3978690_3979221_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP048330.1\|WP_000349953.1\|3987341_3988559_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP048330.1\|WP_000122890.1\|3991085_3991676_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP048330.1\|WP_113975467.1\|3982337_3983279_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP048330.1\|WP_001183198.1\|3979328_3980660_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874

Protein	Function_ID	Function_description	E-value
NZ_CP048330.1\|WP_000257192.1\|3975244_3976087_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP048330.1\|WP_000787103.1\|3984536_3986051_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP048330.1\|WP_001352305.1\|3990294_3991080_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.51953e-178
NZ_CP048330.1\|WP_000543594.1\|3997290_3998112_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.59527e-141
NZ_CP048330.1\|WP_001352306.1\|3995686_3996835_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP048330.1\|WP_000377098.1\|3976835_3978698_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP048330.1\|WP_000624375.1\|3976164_3976644_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP048330.1\|WP_001287715.1\|3981000_3982287_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP048330.1\|WP_000203741.1\|3980716_3981004_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP048330.1\|WP_000333125.1\|3991794_3992190_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
NZ_CP048330.1\|WP_000347117.1\|3986081_3987224_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP048330.1\|WP_000263451.1\|3988665_3990186_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP048330.1\|WP_001554682.1\|3983293_3984064_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	1.00906e-168
NZ_CP048330.1\|WP_001126340.1\|3992450_3995669_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP048330.1\|WP_000610901.1\|3974860_3975238_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP048330.1\|WP_000600725.1\|3978690_3979221_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP048330.1\|WP_000349953.1\|3987341_3988559_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP048330.1\|WP_000122890.1\|3991085_3991676_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.44962e-142
NZ_CP048330.1\|WP_113975467.1\|3982337_3983279_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP048330.1\|WP_001183198.1\|3979328_3980660_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59

>NZ_CP048330.1|WP_001554682.1|3983293_3984064_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQCIVIEGDGEEQIAAFAENLRKVI
>NZ_CP048330.1|WP_113975467.1|3982337_3983279_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHIWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP048330.1|WP_001287715.1|3981000_3982287_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP048330.1|WP_000203741.1|3980716_3981004_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP048330.1|WP_001183198.1|3979328_3980660_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP048330.1|WP_000600725.1|3978690_3979221_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP048330.1|WP_000377098.1|3976835_3978698_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP048330.1|WP_000624375.1|3976164_3976644_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP048330.1|WP_000257192.1|3975244_3976087_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>NZ_CP048330.1|WP_000610901.1|3974860_3975238_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP048330.1|WP_000787103.1|3984536_3986051_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP048330.1|WP_000347117.1|3986081_3987224_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP048330.1|WP_000349953.1|3987341_3988559_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP048330.1|WP_000263451.1|3988665_3990186_+|crotonobetaine/carnitine-CoA-ligase
MWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRSKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSEQEKDAFCECFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP048330.1|WP_001352305.1|3990294_3991080_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVNQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP048330.1|WP_000122890.1|3991085_3991676_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCNTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFIKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP048330.1|WP_000333125.1|3991794_3992190_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP048330.1|WP_001126340.1|3992450_3995669_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECESNPSDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKTLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP048330.1|WP_001352306.1|3995686_3996835_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTIKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIALIEQYRKTAK
>NZ_CP048330.1|WP_000543594.1|3997290_3998112_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGSIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048330_7	7.1\|3984172\|43\|NZ_CP048330\|PILER-CR	3984172-3984214	43	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141084-141126	0	1.0
NZ_CP048330_2	2.2\|1030193\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030193-1030224	32	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	65474-65505	5	0.844
NZ_CP048330_2	2.2\|1030193\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030193-1030224	32	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	208287-208318	6	0.812
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	MK416018	Klebsiella phage ST147-VIM1phi7.1, complete genome	24790-24821	7	0.781
NZ_CP048330_2	2.4\|1030315\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030315-1030346	32	MF351863	Synechococcus phage Bellamy, complete genome	123998-124029	7	0.781
NZ_CP048330_1	1.3\|1004309\|33\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1004309-1004341	33	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755172-755204	8	0.758
NZ_CP048330_2	2.2\|1030193\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030193-1030224	32	MK113951	Phage 5P_3, complete genome	11967-11998	8	0.75
NZ_CP048330_2	2.2\|1030193\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030193-1030224	32	AP017924	Ralstonia phage RP12 DNA, complete genome	11643-11674	8	0.75
NZ_CP048330_2	2.8\|1030559\|32\|NZ_CP048330\|CRISPRCasFinder,CRT	1030559-1030590	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	1143591-1143622	9	0.719
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	891493-891524	9	0.719
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	1143594-1143625	9	0.719
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	315030-315061	9	0.719
NZ_CP048330_2	2.3\|1030254\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030254-1030285	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	1123532-1123563	9	0.719
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	156123-156154	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NZ_CP053984	Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence	21888-21919	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_010935	Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence	28766-28797	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	JX469826	Uncultured bacterium plasmid pB12, complete sequence	11283-11314	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	JN106171	Uncultured bacterium plasmid pAKD26, complete sequence	11289-11320	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_016968	Comamonas testosteroni plasmid pTB30, complete sequence	11287-11318	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_016978	Comamonas testosteroni plasmid pI2, complete sequence	11272-11303	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NZ_CP017760	Cupriavidus necator strain NH9 plasmid pENH91, complete sequence	67078-67109	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NZ_CP053554	Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence	4235-4266	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_019263	Delftia acidovorans plasmid pLME1, complete sequence	11288-11319	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_019264	Delftia acidovorans plasmid pNB8c, complete sequence	11288-11319	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_019283	Delftia acidovorans plasmid pC1-1, complete sequence	11288-11319	10	0.688
NZ_CP048330_2	2.1\|1030132\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030132-1030163	32	NC_006830	Achromobacter xylosoxidans A8 plasmid pA81, complete sequence	11350-11381	10	0.688
NZ_CP048330_2	2.2\|1030193\|32\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1030193-1030224	32	NC_002580	Propionibacterium freudenreichii plasmid p545, complete sequence	2898-2929	10	0.688
NZ_CP048330_6	6.1\|3620569\|59\|NZ_CP048330\|CRISPRCasFinder	3620569-3620627	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_CP048330_1	1.2\|1004248\|33\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1004248-1004280	33	MF158039	Shigella phage Sf12, complete genome	4974-5006	11	0.667
NZ_CP048330_1	1.2\|1004248\|33\|NZ_CP048330\|PILER-CR,CRISPRCasFinder,CRT	1004248-1004280	33	MF158042	Shigella phage Sd1, complete genome	937-969	11	0.667
NZ_CP048330_6	6.1\|3620569\|59\|NZ_CP048330\|CRISPRCasFinder	3620569-3620627	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 7.1|3984172|43|NZ_CP048330|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
*******************************************

2. spacer 2.2|1030193|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 5, identity: 0.844

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgccca	Protospacer
 *.*** * ** ******** ************

3. spacer 2.2|1030193|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
tccgctcg-gcaggctgcaacgcaagccgcccc	Protospacer
 *.*** * ** ******** ***********

4. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to MK416018 (Klebsiella phage ST147-VIM1phi7.1, complete genome) position: , mismatch: 7, identity: 0.781

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
cccatcagcgcgttttttggcggtgtgatgga	Protospacer
****.************** *** *. **.*

5. spacer 2.4|1030315|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 7, identity: 0.781

ttgaactcaccacgattgttaatatggacgat	CRISPR spacer
aaggtatcaccacgattgttgatatgggcgat	Protospacer
  *.  **************.******.****

6. spacer 1.3|1004309|33|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

gacgtggtcatgggtgctgctgttgcagagcca	CRISPR spacer
tccgtggtcgtgggtgctgctgttgctggagcg	Protospacer
  *******.**************** *.. *.

7. spacer 2.2|1030193|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to MK113951 (Phage 5P_3, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gagcatcggctggctgcaaggcaagctgcccc	Protospacer
  **   .******************.****

8. spacer 2.2|1030193|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 8, identity: 0.75

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
gcggaagcgctggctgcacggcaagcggccca	Protospacer
 .*  .* ********** ******* *****

9. spacer 2.8|1030559|32|NZ_CP048330|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

10. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

11. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

12. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

13. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

14. spacer 2.3|1030254|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 9, identity: 0.719

cccaccagcgcgttttttgccggggccatagt	CRISPR spacer
gccacccgcgctttttttgccgggccggatat	Protospacer
 ***** **** ************ * .  .*

15. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
acgtcaccccggaagcgattgccagcacacgc	Protospacer
.  ********.*** **********  .* .

16. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053984 (Achromobacter pestifer strain FDAARGOS_790 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

17. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_010935 (Comamonas testosteroni CNB-1 plasmid pCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

18. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to JX469826 (Uncultured bacterium plasmid pB12, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

19. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to JN106171 (Uncultured bacterium plasmid pAKD26, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

20. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_016968 (Comamonas testosteroni plasmid pTB30, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

21. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_016978 (Comamonas testosteroni plasmid pI2, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

22. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017760 (Cupriavidus necator strain NH9 plasmid pENH91, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

23. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053554 (Diaphorobacter sp. JS3050 plasmid pDCNB, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

24. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_019263 (Delftia acidovorans plasmid pLME1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

25. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_019264 (Delftia acidovorans plasmid pNB8c, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

26. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_019283 (Delftia acidovorans plasmid pC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

27. spacer 2.1|1030132|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_006830 (Achromobacter xylosoxidans A8 plasmid pA81, complete sequence) position: , mismatch: 10, identity: 0.688

gactcaccccgaaagagattgccagccagctt	CRISPR spacer
aggtactgacgaatgagaatgccagccagctt	Protospacer
.. *  .  **** **** *************

28. spacer 2.2|1030193|32|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to NC_002580 (Propionibacterium freudenreichii plasmid p545, complete sequence) position: , mismatch: 10, identity: 0.688

ctgctggagctggctgcaaggcaagccgccca	CRISPR spacer
ccctgagagctggctgccacgcaagccgctgg	Protospacer
*. . .*********** * *********. .

29. spacer 6.1|3620569|59|NZ_CP048330|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

30. spacer 1.2|1004248|33|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
attgtttgcagcattaacgctccccaagtgccg	Protospacer
  *******.************ ***.   ..

31. spacer 1.2|1004248|33|NZ_CP048330|PILER-CR,CRISPRCasFinder,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagtatttc	CRISPR spacer
attgtttgcagcattaacgctctccaagtgccg	Protospacer
  *******.************ ***.   ..

32. spacer 6.1|3620569|59|NZ_CP048330|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1038045 : 1051228

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295182.1\|1038045_1038807_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
WP_000254708.1\|1038800_1039427_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001272592.1\|1039566_1040706_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000081550.1\|1040768_1041761_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_000104441.1\|1041854_1043219_-	GntP family transporter	NA	NA	NA	NA
WP_001136934.1\|1043307_1044084_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_001278994.1\|1044088_1044727_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590403.1\|1044723_1045986_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
WP_000847985.1\|1045982_1046891_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001272547.1\|1047056_1047854_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.3e-69	56.0
WP_001141322.1\|1047904_1048561_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	6.2e-49	46.3
WP_001272928.1\|1048666_1051228_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.0e-30	20.6

DBSCAN-SWA_2

1086309 : 1173638

Erwinia_phage(22.92%)

integrase,lysis,tRNA,head,plate,capsid,portal,tail,terminase

attL 1084922:1084938|attR 1165336:1165352

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1084922:1084938	attL	NA	NA	NA	NA
WP_000047184.1\|1086309_1088940_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6
WP_000906486.1\|1089174_1089360_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000273290.1\|1090817_1091384_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_001287454.1\|1091380_1091809_+	DedA family protein	NA	NA	NA	NA
WP_000611804.1\|1091881_1093438_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001130211.1\|1093587_1094103_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_001295176.1\|1094166_1095705_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001326681.1\|1095721_1096894_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_000378447.1\|1097020_1097551_-	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_048265082.1\|1097521_1097623_+	hypothetical protein	NA	NA	NA	NA
WP_000119763.1\|1097641_1097977_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000445651.1\|1097966_1098704_-	L-valine exporter subunit YgaZ	NA	NA	NA	NA
WP_000165680.1\|1098827_1100012_-	MFS transporter	NA	NA	NA	NA
WP_001216525.1\|1100203_1101196_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000774988.1\|1101253_1102318_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_000985494.1\|1102310_1103513_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000777969.1\|1103866_1104826_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.8
WP_000246527.1\|1104835_1106980_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.7e-196	48.5
WP_000080947.1\|1106952_1107363_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.6e-18	44.4
WP_001223227.1\|1107359_1107605_-	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_001295174.1\|1107852_1108182_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000281320.1\|1108333_1108678_+	YgaC family protein	NA	NA	NA	NA
WP_000492656.1\|1108714_1109164_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000115383.1\|1109832_1110237_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_001229442.1\|1110283_1110808_-	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000137280.1\|1110817_1111117_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000508177.1\|1111299_1111458_+	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000522415.1\|1111541_1111991_+	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
WP_000156811.1\|1111991_1112654_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_001333601.1\|1112680_1114081_-	GABA permease	NA	NA	NA	NA
WP_001087611.1\|1114318_1115599_-	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	1.9e-33	30.1
WP_000772833.1\|1115612_1117061_-	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000271909.1\|1117083_1118352_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000993126.1\|1118371_1119349_-	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_001333598.1\|1121604_1121937_-	hypothetical protein	NA	NA	NA	NA
WP_023223216.1\|1122729_1122948_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.6e-33	86.1
WP_053920611.1\|1122987_1124181_-	phage late control D family protein	Q6K1G4	Salmonella_virus	1.1e-168	79.4
WP_023252154.1\|1124183_1124648_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	5.9e-62	75.5
WP_053881138.1\|1124659_1127089_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	1.7e-277	69.5
WP_000763326.1\|1127081_1127201_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_053881139.1\|1127233_1127515_-\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	3.6e-30	77.3
WP_053881140.1\|1127577_1128096_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	7.7e-71	75.0
WP_053881141.1\|1128108_1129296_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	5.5e-189	82.3
WP_053881142.1\|1129427_1129841_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	8.1e-23	46.5
WP_053881143.1\|1131009_1131621_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	9.0e-95	83.1
WP_053881144.1\|1131613_1132522_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	4.6e-135	81.5
WP_053881145.1\|1132526_1132874_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	2.1e-40	70.4
WP_053881146.1\|1132870_1133512_-\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	5.4e-90	78.4
WP_053881147.1\|1133597_1134311_+	hypothetical protein	NA	NA	NA	NA
WP_053881148.1\|1134579_1135656_-	hypothetical protein	NA	NA	NA	NA
WP_053881149.1\|1135669_1136122_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.1e-48	68.0
WP_053881150.1\|1136114_1136582_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.3e-56	69.0
WP_053881151.1\|1136689_1137103_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	9.3e-35	59.1
WP_024150039.1\|1137099_1137609_-	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_000524754.1\|1137592_1137814_-	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_001100637.1\|1137804_1138008_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_053881152.1\|1138007_1138508_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	5.0e-59	68.5
WP_053881153.1\|1138605_1139364_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	6.0e-80	67.1
WP_053881154.1\|1139367_1140528_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	1.6e-129	63.1
WP_053881155.1\|1140549_1141413_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	8.3e-102	66.2
WP_053881156.1\|1141577_1143347_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	9.4e-286	80.8
WP_053881157.1\|1143346_1144384_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.3e-162	80.8
WP_053881158.1\|1144851_1146069_-	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	9.7e-32	29.6
WP_071940803.1\|1146362_1146545_-	Tum protein	A0A218M4I0	Erwinia_phage	3.2e-16	75.9
WP_053881159.1\|1146688_1148929_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	93.1
WP_071940768.1\|1148942_1149251_-	DUF3850 domain-containing protein	A0A1S6KVH3	Escherichia_phage	1.6e-07	43.2
WP_052935633.1\|1149247_1149475_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	4.8e-25	70.7
WP_052935634.1\|1149474_1149702_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.3e-27	90.7
WP_052935635.1\|1149771_1149972_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	1.1e-28	89.4
WP_052935636.1\|1149958_1150186_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.6e-33	92.0
WP_052935637.1\|1150193_1150703_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	1.2e-89	98.8
WP_001630878.1\|1150733_1150997_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
WP_053881160.1\|1151129_1151705_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.2e-67	65.4
WP_052935639.1\|1151704_1152709_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.2e-191	97.6
WP_052935640.1\|1152719_1154183_-	hypothetical protein	NA	NA	NA	NA
WP_072097107.1\|1156960_1157170_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.3e-08	68.1
WP_001120794.1\|1157324_1157444_+	hypothetical protein	NA	NA	NA	NA
WP_001581967.1\|1157508_1162089_+	adhesin-like autotransporter YpjA/EhaD	NA	NA	NA	NA
WP_000162574.1\|1162831_1163314_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_000600189.1\|1163445_1163922_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001117838.1\|1163911_1164202_+	RnfH family protein	NA	NA	NA	NA
WP_001203437.1\|1164263_1164605_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880910.1\|1164753_1166415_-	DNA repair protein RecN	NA	NA	NA	NA
1165336:1165352	attR	NA	NA	NA	NA
WP_001059169.1\|1166500_1167379_-	NAD(+) kinase	NA	NA	NA	NA
WP_001296310.1\|1167501_1168095_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_010723175.1\|1168149_1169436_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001189257.1\|1169456_1170323_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460035.1\|1170414_1171776_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256450.1\|1172024_1172273_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043335.1\|1172291_1172840_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000264777.1\|1172870_1173638_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1684502 : 1693943

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569315.1\|1684502_1685429_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8
WP_000783120.1\|1685433_1686165_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1686145_1686253_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1686312_1687044_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1687265_1688951_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1688947_1689667_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950409.1\|1689713_1690184_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_001295429.1\|1690223_1690685_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001375261.1\|1690809_1692810_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001333512.1\|1692806_1693943_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7

DBSCAN-SWA_4

1751616 : 1761921

Catovirus(16.67%)

transposase,integrase

attL 1736474:1736487|attR 1758858:1758871

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1736474:1736487	attL	NA	NA	NA	NA
WP_001295424.1\|1751616_1752258_+	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	36.9
WP_001234777.1\|1752349_1752931_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.8e-31	42.1
WP_001518066.1\|1752952_1754806_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_016230728.1\|1755257_1757948_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0R6PEZ3	Moraxella_phage	9.3e-35	43.1
WP_024192426.1\|1758700_1759591_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.6e-44	40.3
1758858:1758871	attR	NA	NA	NA	NA
WP_162656948.1\|1759866_1760721_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.9e-68	44.7
WP_001254928.1\|1760769_1761921_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.2e-41	35.3

DBSCAN-SWA_5

2245550 : 2330228

103

Enterobacteria_phage(39.66%)

protease,integrase,transposase,lysis,head,capsid,portal,tail,terminase

attL 2266423:2266442|attR 2305930:2305949

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260849.1\|2245550_2246372_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2246471_2246555_-	hypothetical protein	NA	NA	NA	NA
WP_000743952.1\|2246647_2246983_-	acid shock protein	NA	NA	NA	NA
WP_001310555.1\|2247301_2248318_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
WP_000091840.1\|2248578_2249832_-	MFS transporter	NA	NA	NA	NA
WP_001019525.1\|2249938_2250832_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225262.1\|2250966_2252187_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919231.1\|2252311_2253007_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_001315626.1\|2252959_2254252_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148710.1\|2254410_2255025_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000526503.1\|2255067_2255922_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2255923_2256541_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_137590995.1\|2256551_2258975_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-208	48.6
WP_000041675.1\|2259035_2261462_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.2
WP_001300836.1\|2261660_2261966_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001321287.1\|2262073_2262784_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138581.1\|2262786_2263347_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705211.1\|2263381_2263723_-	DUF1283 family protein	NA	NA	NA	NA
WP_000598292.1\|2263857_2264184_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_001295394.1\|2264389_2265604_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836066.1\|2265615_2266635_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
2266423:2266442	attL	NA	NA	NA	NA
WP_001360138.1\|2266692_2266803_+	hypothetical protein	NA	NA	NA	NA
WP_000876958.1\|2266822_2268103_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	3.3e-155	62.1
WP_001296941.1\|2268137_2268374_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_162656855.1\|2268461_2270933_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
WP_162656857.1\|2271026_2271218_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854559.1\|2271214_2271403_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001331716.1\|2271803_2271968_+	hypothetical protein	NA	NA	NA	NA
WP_001171946.1\|2271971_2272190_-	hypothetical protein	NA	NA	NA	NA
WP_000379575.1\|2272349_2272505_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000448564.1\|2272671_2273079_-	DNA-binding transcriptional dual regulator DicA	K7PM82	Enterobacteria_phage	4.4e-13	54.7
WP_000920568.1\|2273162_2273393_+	dicB transcriptional regulator DicC	NA	NA	NA	NA
WP_000705358.1\|2273376_2273898_+	hypothetical protein	NA	NA	NA	NA
WP_000054512.1\|2273878_2274844_+	hypothetical protein	U5P0A0	Shigella_phage	2.2e-55	60.2
WP_001151262.1\|2274884_2275307_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
WP_001310834.1\|2275303_2275660_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
WP_001333339.1\|2276179_2277715_-\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-289	99.4
WP_162656859.1\|2277774_2277894_-	PapI protein	A0A0N7BTS3	Escherichia_phage	5.2e-07	75.0
WP_085948620.1\|2277859_2279073_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_039720394.1\|2279124_2279424_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	5.4e-53	100.0
WP_000839179.1\|2279420_2279825_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_072096395.1\|2280549_2280768_+	hypothetical protein	NA	NA	NA	NA
WP_000955178.1\|2280742_2280925_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
WP_162656861.1\|2281102_2282416_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001301033.1\|2282852_2283185_-	protein FlxA	NA	NA	NA	NA
WP_001326990.1\|2283387_2283693_-	hypothetical protein	NA	NA	NA	NA
WP_000534858.1\|2283717_2283957_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_000323025.1\|2283956_2284244_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000813254.1\|2284315_2284471_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000980994.1\|2284687_2284939_+	hypothetical protein	NA	NA	NA	NA
WP_012304870.1\|2285005_2285284_+	hypothetical protein	NA	NA	NA	NA
WP_001265199.1\|2285285_2286335_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-112	57.0
WP_001047135.1\|2286348_2287101_+	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_120795389.1\|2287378_2287468_-	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_000087756.1\|2287522_2287735_-	cold shock-like protein CspF	NA	NA	NA	NA
WP_000066484.1\|2288035_2288251_+	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000839590.1\|2289004_2289220_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000189916.1\|2289224_2289536_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_001092971.1\|2289532_2290066_+	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_001071769.1\|2290062_2290560_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_000066495.1\|2290922_2291135_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071524604.1\|2291145_2291334_+	cold-shock protein	NA	NA	NA	NA
WP_120795388.1\|2291336_2291402_+	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_001309517.1\|2291481_2291637_+	hypothetical protein	NA	NA	NA	NA
WP_001019606.1\|2291808_2291982_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000373090.1\|2292910_2293321_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001368374.1\|2293378_2293612_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_162656864.1\|2294000_2294546_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_109550238.1\|2294520_2296446_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000198149.1\|2296442_2296649_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_032241081.1\|2296645_2298247_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.9e-310	99.4
WP_000123218.1\|2298227_2299547_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	9.6e-235	99.1
WP_001295978.1\|2299556_2299889_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_001365132.1\|2299951_2300221_+\|capsid	capsid protein	A0A2I6TCE5	Escherichia_phage	5.3e-39	100.0
WP_094308187.1\|2300353_2301589_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-99	45.2
WP_000737990.1\|2301590_2301821_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_016247984.1\|2301837_2302659_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_000872983.1\|2302790_2303147_-	SWIM zinc finger family protein	NA	NA	NA	NA
WP_024164959.1\|2303174_2303366_-	hypothetical protein	NA	NA	NA	NA
WP_061182184.1\|2303376_2303709_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000920681.1\|2303701_2303887_+	hypothetical protein	NA	NA	NA	NA
WP_001156310.1\|2303886_2304078_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.1e-11	59.3
WP_001091146.1\|2304078_2304300_+	hypothetical protein	NA	NA	NA	NA
WP_113975552.1\|2304317_2304617_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_094308185.1\|2304613_2306365_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.3e-93	41.1
2305930:2305949	attR	NA	NA	NA	NA
WP_001356810.1\|2306654_2306912_+	hypothetical protein	NA	NA	NA	NA
WP_001710062.1\|2306908_2307358_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001710063.1\|2307574_2308615_+\|capsid	phage capsid protein	C6ZCY2	Enterobacteria_phage	2.0e-65	42.4
WP_000190773.1\|2308624_2308966_+\|head	head decoration protein	NA	NA	NA	NA
WP_001178671.1\|2308977_2309361_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_053902557.1\|2310286_2311222_+	hypothetical protein	NA	NA	NA	NA
WP_087604858.1\|2311375_2312140_+\|capsid	major capsid protein E	C6ZCY2	Enterobacteria_phage	1.0e-140	99.6
WP_000158905.1\|2312181_2312580_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	1.2e-63	99.2
WP_001297108.1\|2313945_2314665_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.9e-128	100.0
WP_000847379.1\|2318065_2318395_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152640.1\|2318394_2319093_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.5e-133	99.6
WP_000194783.1\|2319098_2319842_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-146	96.4
WP_000090895.1\|2319778_2320411_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.5e-95	89.5
WP_162656866.1\|2320471_2323969_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	98.0
WP_061182196.1\|2324039_2324639_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	1.7e-106	95.0
WP_162656868.1\|2324703_2328240_+	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	7.2e-11	36.4
WP_162656870.1\|2328239_2328824_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.0e-103	94.3
WP_162656872.1\|2328896_2330228_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	8.5e-21	37.1

DBSCAN-SWA_6

2844538 : 2904384

Escherichia_phage(28.81%)

protease,integrase,transposase,tail,lysis,head,capsid,portal,holin,terminase

attL 2855075:2855091|attR 2871209:2871225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_113975553.1\|2844538_2845669_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	2.6e-103	51.4
WP_000113189.1\|2845646_2845895_-	excisionase	NA	NA	NA	NA
WP_162656894.1\|2845959_2848431_-	exonuclease	A0A192Y6E0	Salmonella_phage	2.5e-58	58.0
WP_001612869.1\|2848524_2848716_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854564.1\|2848712_2848901_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001331716.1\|2849301_2849466_+	hypothetical protein	NA	NA	NA	NA
WP_001171946.1\|2849469_2849688_-	hypothetical protein	NA	NA	NA	NA
WP_072171742.1\|2849847_2850003_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.8e-07	51.1
WP_000362155.1\|2850263_2850683_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
WP_000391950.1\|2850783_2851065_+	hypothetical protein	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
WP_000693850.1\|2851048_2851474_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262390.1\|2851545_2852616_+	hypothetical protein	A0A088CD36	Shigella_phage	2.6e-52	56.6
WP_001151150.1\|2852656_2853079_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
WP_000761441.1\|2853079_2853493_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	2.0e-58	99.2
WP_001224662.1\|2853586_2853769_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_011076332.1\|2854382_2854601_+	hypothetical protein	NA	NA	NA	NA
WP_001013636.1\|2854803_2855016_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
2855075:2855091	attL	NA	NA	NA	NA
WP_032155008.1\|2855183_2855462_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001221526.1\|2855463_2856522_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.0
WP_000139999.1\|2856522_2856903_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.6
WP_000762879.1\|2856899_2857721_+	antitermination protein	K7P7B9	Enterobacteria_phage	5.1e-77	58.2
WP_106104550.1\|2858115_2858202_+	DUF3927 family protein	NA	NA	NA	NA
WP_113975547.1\|2858690_2858903_-	hypothetical protein	NA	NA	NA	NA
WP_001333560.1\|2858973_2859309_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.4e-44	74.8
WP_072147991.1\|2859555_2859759_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	5.9e-27	95.2
WP_072617254.1\|2859755_2859917_+	hypothetical protein	Q08JA2	Stx2-converting_phage	4.6e-14	87.0
WP_000372595.1\|2860066_2860282_+\|holin	holin	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_000193264.1\|2860286_2860637_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_032358753.1\|2860700_2861234_+	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-99	95.5
WP_001228695.1\|2861450_2861633_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738421.1\|2861723_2862017_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001135103.1\|2862542_2862893_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.7e-64	97.4
WP_086732185.1\|2863040_2863523_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	1.9e-84	97.5
WP_001140906.1\|2863522_2864716_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	2.5e-197	99.7
WP_113975546.1\|2864721_2865945_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	3.9e-97	46.3
WP_032166742.1\|2865922_2866144_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_021530547.1\|2866207_2866486_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_113975545.1\|2866543_2867125_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	1.5e-51	60.7
WP_077763494.1\|2867081_2868038_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_113975544.1\|2868030_2868267_+	hypothetical protein	NA	NA	NA	NA
WP_097314938.1\|2868259_2868472_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.8e-05	44.1
WP_072033963.1\|2868461_2868680_+	hypothetical protein	NA	NA	NA	NA
WP_097314936.1\|2868686_2869001_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_113975543.1\|2868997_2871121_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.6e-175	53.8
WP_113975542.1\|2871331_2871757_+	single-stranded DNA-binding protein	NA	NA	NA	NA
2871209:2871225	attR	NA	NA	NA	NA
WP_105472039.1\|2871772_2872069_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_113975541.1\|2872101_2872350_+	hypothetical protein	NA	NA	NA	NA
WP_001053661.1\|2872386_2872893_-	hypothetical protein	NA	NA	NA	NA
WP_024226530.1\|2873179_2874349_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	7.9e-164	76.0
WP_021557929.1\|2874403_2874964_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.7e-87	84.4
WP_021557928.1\|2874965_2876189_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.5e-213	87.6
WP_058101044.1\|2876185_2876524_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.6e-37	71.4
WP_021557926.1\|2876520_2876817_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.6e-41	80.6
WP_029593913.1\|2876816_2877257_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.4e-65	76.7
WP_072248979.1\|2877240_2877426_+	hypothetical protein	NA	NA	NA	NA
WP_000113645.1\|2877545_2877902_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_113975539.1\|2877885_2879547_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	1.0e-278	82.3
WP_000923129.1\|2880946_2882173_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	1.1e-203	83.1
WP_000999828.1\|2882165_2882765_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
WP_000766109.1\|2882779_2883997_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
WP_000719065.1\|2884073_2884391_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	1.8e-22	49.5
WP_001147814.1\|2884399_2884738_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
WP_000968644.1\|2884734_2885184_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	6.1e-64	81.2
WP_001206306.1\|2885180_2885525_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	1.4e-55	97.4
WP_000839179.1\|2886180_2886585_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
WP_000612626.1\|2886581_2886929_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_001333339.1\|2886977_2888513_+\|transposase	IS66-like element ISEc22 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.5e-289	99.4
WP_001324129.1\|2888751_2889138_+\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	8.9e-64	100.0
WP_077628067.1\|2889179_2889440_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.7e-39	96.5
WP_113975537.1\|2889485_2892713_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	94.9
WP_001330090.1\|2892690_2893047_+\|tail	tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_001672796.1\|2893046_2893745_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.8e-132	97.4
WP_038347027.1\|2893750_2894494_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-145	95.1
WP_162656896.1\|2894430_2895063_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	6.1e-94	88.6
WP_162656898.1\|2895123_2898621_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	98.1
WP_061182196.1\|2898691_2899291_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	1.7e-106	95.0
WP_162656900.1\|2899355_2902814_+	hypothetical protein	K7PGT9	Enterobacteria_phage	1.6e-58	97.5
WP_000946030.1\|2902885_2903125_+	hypothetical protein	NA	NA	NA	NA
WP_069067742.1\|2903124_2903442_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.1e-23	52.9
WP_162656903.1\|2903799_2904384_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.2e-105	95.9

DBSCAN-SWA_7

3148096 : 3238546

102

Enterobacteria_phage(51.52%)

integrase,transposase,terminase,head,lysis,capsid,tail,portal

attL 3141682:3141697|attR 3238877:3238892

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3141682:3141697	attL	NA	NA	NA	NA
WP_085947917.1\|3148096_3149370_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_000876763.1\|3149495_3150026_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001125439.1\|3152040_3153363_-	type II toxin-antitoxin system serine/threonine protein kinase toxin HipA	NA	NA	NA	NA
WP_001301023.1\|3153362_3153629_-	type II toxin-antitoxin system antitoxin HipB	NA	NA	NA	NA
WP_001083595.1\|3153851_3155252_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	4.0e-106	49.2
WP_000113108.1\|3159803_3161396_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_000154342.1\|3161474_3162428_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001194860.1\|3162676_3164212_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	7.2e-16	23.6
WP_000911186.1\|3164205_3165234_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001222721.1\|3165233_3166226_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000172465.1\|3166237_3167260_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774165.1\|3167286_3168162_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000558527.1\|3168185_3168476_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001286597.1\|3168532_3169291_+	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_001313828.1\|3169294_3170209_-	bestrophin family inner membrane protein	NA	NA	NA	NA
WP_000854633.1\|3170415_3171867_-	tagaturonate reductase	NA	NA	NA	NA
WP_000878968.1\|3172093_3173041_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	7.3e-19	29.6
WP_001191027.1\|3173152_3173512_-	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_000257409.1\|3173511_3174438_-	glutaminase B	NA	NA	NA	NA
WP_000156615.1\|3174501_3175890_-	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000366501.1\|3175990_3176872_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_162656907.1\|3176949_3178065_+	putative protein YneK	NA	NA	NA	NA
WP_000210799.1\|3178214_3179405_+	L-arabinose MFS transporter	NA	NA	NA	NA
WP_000885033.1\|3179429_3180095_-	NAAT family transporter MarC	NA	NA	NA	NA
WP_000843414.1\|3180306_3180741_+	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000091199.1\|3180760_3181144_+	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000803657.1\|3181175_3181394_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_001375197.1\|3181504_3182323_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_001054183.1\|3182517_3183705_+	efflux MFS transporter YdeE	NA	NA	NA	NA
WP_000901367.1\|3183831_3183927_+	protein MgtS	NA	NA	NA	NA
WP_000592801.1\|3185549_3185813_-	diguanylate cyclase DgcZ	NA	NA	NA	NA
WP_000671737.1\|3186067_3186460_-	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_001024746.1\|3186735_3187254_+	2-oxo-tetronate isomerase	NA	NA	NA	NA
WP_000210373.1\|3187297_3189343_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_000636571.1\|3189479_3190226_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_000215549.1\|3190314_3191001_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000214712.1\|3191177_3191381_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527809.1\|3191415_3192876_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.5e-42	29.6
WP_000347482.1\|3192964_3194248_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|3194852_3194966_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|3195034_3195268_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000078177.1\|3195584_3196175_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000885611.1\|3196272_3196848_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000279080.1\|3196847_3199922_-	hypothetical protein	U5N099	Enterobacteria_phage	2.5e-68	82.1
WP_001230375.1\|3199986_3200586_-	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	5.7e-110	98.5
WP_162656909.1\|3200655_3204153_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	97.2
WP_000090891.1\|3204212_3204845_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_032200299.1\|3204781_3205525_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	96.8
WP_162656911.1\|3205530_3206229_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.1e-131	97.8
WP_000847332.1\|3206228_3206558_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.6e-59	99.1
WP_053276142.1\|3206554_3209134_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	97.2
WP_001347435.1\|3209126_3209516_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	5.3e-56	99.0
WP_021553622.1\|3209542_3209965_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.6e-58	82.9
WP_053276150.1\|3209980_3210721_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.5e-128	97.6
WP_000683125.1\|3210728_3211124_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	6.5e-70	98.5
WP_000975086.1\|3211120_3211699_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.9e-79	98.4
WP_000752996.1\|3211710_3212064_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.5e-62	99.1
WP_162656914.1\|3212075_3212471_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	6.3e-57	94.7
WP_023156389.1\|3212512_3213538_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.5e-187	97.4
WP_001549228.1\|3213593_3213926_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_112823835.1\|3213935_3215255_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.8e-234	98.9
WP_162656916.1\|3215235_3216837_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.2e-309	98.9
WP_000198149.1\|3216833_3217040_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001549229.1\|3217036_3218962_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_162656864.1\|3218936_3219482_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001421937.1\|3219870_3220065_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
WP_001031427.1\|3220229_3220436_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001403557.1\|3220721_3221132_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.4e-72	99.3
WP_000738492.1\|3221422_3221716_+	serum resistance lipoprotein Bor	K7PL54	Enterobacteria_phage	4.0e-48	100.0
WP_012738274.1\|3221806_3221989_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	1.7e-17	100.0
WP_001547121.1\|3222205_3222703_-	lysozyme	A5LH83	Enterobacteria_phage	1.9e-90	98.2
WP_000839596.1\|3222702_3222918_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737263.1\|3223489_3224572_+	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
WP_001204780.1\|3224760_3225144_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_000971055.1\|3225229_3225370_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001099712.1\|3225366_3225729_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_047082235.1\|3225725_3226016_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.1e-46	93.8
WP_000224914.1\|3226008_3226179_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001010743.1\|3226178_3226634_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.7e-61	67.5
WP_072841938.1\|3226630_3226732_-	hypothetical protein	NA	NA	NA	NA
WP_000520499.1\|3226855_3227257_-	hypothetical protein	NA	NA	NA	NA
WP_001038620.1\|3227235_3227652_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_001224618.1\|3228116_3228611_-	hypothetical protein	NA	NA	NA	NA
WP_000145941.1\|3228757_3228931_-	hypothetical protein	M1FPD5	Enterobacteria_phage	9.2e-21	90.9
WP_000788885.1\|3228927_3229629_-	hypothetical protein	M1FJ72	Enterobacteria_phage	1.1e-128	98.7
WP_162656957.1\|3229625_3230555_-	replication protein	A0A0M5M7Y1	Salmonella_phage	1.2e-109	63.8
WP_001182903.1\|3230641_3231181_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
WP_001067458.1\|3231250_3231481_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000259990.1\|3231519_3232275_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_000233576.1\|3232870_3233077_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995439.1\|3233152_3233449_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|3233454_3234240_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_162656918.1\|3234236_3234917_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	2.3e-131	99.6
WP_000682305.1\|3234913_3235096_+	DUF1317 domain-containing protein	A0A0P0ZD61	Stx2-converting_phage	2.8e-28	98.3
WP_000548514.1\|3235068_3235260_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_097480736.1\|3235270_3235552_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	2.3e-45	96.8
WP_000763363.1\|3235650_3235872_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_001289872.1\|3235868_3236240_+	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	9.2e-34	91.4
WP_000103023.1\|3236236_3236890_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.8e-62	48.5
WP_001277770.1\|3236986_3237166_+	Eag protein	K7PL40	Enterobacteria_phage	7.3e-29	98.3
WP_001303849.1\|3237279_3237498_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000533643.1\|3237475_3238546_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	3.9e-202	100.0
3238877:3238892	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3748415 : 3775746

Clostridioides_phage(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000006255.1\|3748415_3748913_-\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_000056849.1\|3749088_3749838_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.0e-20	38.5
WP_000729703.1\|3750047_3750308_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_000615983.1\|3750310_3750589_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_001225679.1\|3750744_3751485_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_162656926.1\|3751455_3752223_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|3752428_3753007_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000973083.1\|3753246_3755691_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000532698.1\|3755733_3756207_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001118036.1\|3756360_3757131_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000420818.1\|3757171_3758308_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_001101839.1\|3758738_3759131_-	hypothetical protein	NA	NA	NA	NA
WP_000508724.1\|3759108_3763341_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.4e-22	43.1
WP_032329316.1\|3763416_3765558_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.4e-25	25.0
WP_001142958.1\|3765767_3766286_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037397.1\|3766980_3767481_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|3767515_3767740_+	hypothetical protein	NA	NA	NA	NA
WP_000056989.1\|3767790_3769266_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000611744.1\|3769272_3769686_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393852.1\|3769689_3771540_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348793.1\|3771503_3772586_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113713.1\|3772610_3773891_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|3773887_3774412_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246443.1\|3774414_3775746_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_9

4135445 : 4174893

Enterobacteria_phage(30.0%)

transposase,integrase

attL 4162163:4162179|attR 4183574:4183590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001254928.1\|4135445_4136597_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.2e-41	35.3
WP_160370960.1\|4136645_4137500_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.7e-68	45.1
WP_001293435.1\|4137653_4139651_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_001375347.1\|4139713_4140991_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_000145475.1\|4141238_4141895_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_001390362.1\|4141952_4142057_-	hypothetical protein	NA	NA	NA	NA
WP_001296706.1\|4142075_4142204_-	alcohol dehydrogenase	NA	NA	NA	NA
WP_001387298.1\|4143302_4143401_+	acetolactate synthase	NA	NA	NA	NA
WP_001295538.1\|4143402_4144185_-	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_000350265.1\|4144490_4145411_+	ribokinase	NA	NA	NA	NA
WP_000998347.1\|4145438_4146755_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_000107480.1\|4146766_4147780_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_085947917.1\|4147924_4149197_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_001446914.1\|4149583_4149823_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-13	66.0
WP_000345346.1\|4150033_4151290_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000705931.1\|4151302_4151590_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000916805.1\|4151605_4152049_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000416153.1\|4152319_4153351_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	8.0e-19	27.0
WP_001375333.1\|4154701_4155136_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_001352291.1\|4156044_4156371_+	hypothetical protein	NA	NA	NA	NA
WP_000228394.1\|4156580_4156925_-	hypothetical protein	NA	NA	NA	NA
WP_000981734.1\|4157279_4158629_-	MFS transporter	NA	NA	NA	NA
WP_000102863.1\|4158649_4159567_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
WP_001041752.1\|4159578_4160775_-	CoA transferase	NA	NA	NA	NA
WP_000018562.1\|4161011_4162925_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
4162163:4162179	attL	NA	NA	NA	NA
WP_162656931.1\|4164980_4165760_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.0e-138	99.6
WP_085948620.1\|4166522_4167735_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.4e-168	99.3
WP_001254928.1\|4168263_4169415_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.2e-41	35.3
WP_001352287.1\|4170007_4170910_+	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_001352286.1\|4171027_4173208_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_001446910.1\|4173210_4173585_+	hypothetical protein	NA	NA	NA	NA
WP_000772679.1\|4173627_4174893_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.8e-74	40.5
4183574:4183590	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048334

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048331

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP048330

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection