CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP048380	Klebsiella variicola strain 118 plasmid p118_A, complete sequence	0 crisprs	csa3	0	3
NZ_CP048381	Klebsiella variicola strain 118 plasmid p118_B-OXA1, complete sequence	0 crisprs	RT	0	2
NZ_CP048379	Klebsiella variicola strain 118 chromosome, complete genome	8 crisprs	csa3,cas3,DEDDh,DinG,cas3HD,WYL,RT	1	8

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3286 : 66320

Escherichia_phage(25.0%)

transposase,integrase

attL 10690:10749|attR 63809:65149

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044702994.1\|3286_4051_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|4277_4583_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|4888_5593_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|5598_5739_+	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|6224_6962_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|6958_7183_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|7393_8887_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|8917_9169_+	hypothetical protein	NA	NA	NA	NA
WP_000251875.1\|9062_9365_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_001043260.1\|9451_10267_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|10596_10773_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
10690:10749	attL	NA	NA	NA	NA
WP_000427619.1\|10954_11959_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001067855.1\|13557_14262_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001445937.1\|14642_15599_+	hypothetical protein	NA	NA	NA	NA
WP_011977825.1\|15625_15787_+	hypothetical protein	NA	NA	NA	NA
WP_000176305.1\|15783_16395_-	DUF2913 family protein	NA	NA	NA	NA
WP_001568067.1\|16448_16730_-	hypothetical protein	NA	NA	NA	NA
WP_011977766.1\|16902_17238_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_001067855.1\|18258_18963_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_019706030.1\|21105_22110_-	hypothetical protein	NA	NA	NA	NA
WP_085286834.1\|23822_24770_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	4.3e-176	98.4
WP_004099052.1\|25142_27335_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
WP_004099051.1\|27464_28748_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_009653212.1\|28836_30270_+	glycogen synthase GlgA	NA	NA	NA	NA
WP_023157975.1\|30288_32736_+	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	6.1e-25	69.2
WP_004197675.1\|32849_34493_+	alpha-D-glucose phosphate-specific phosphoglucomutase	A0A1X9I671	Streptococcus_phage	1.5e-22	25.0
WP_058350821.1\|35517_35772_+	hypothetical protein	NA	NA	NA	NA
WP_003846919.1\|36511_36682_-	hypothetical protein	NA	NA	NA	NA
WP_023158026.1\|36738_37992_-	lactose permease	NA	NA	NA	NA
WP_029498501.1\|38043_41118_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.6
WP_004152286.1\|41239_42322_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_000427619.1\|42908_43913_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_071785586.1\|44210_44453_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|44783_45077_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|45175_45943_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004118246.1\|45943_46900_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|46896_47895_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_023157913.1\|47891_48794_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_032430169.1\|48838_51163_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004197067.1\|51255_52209_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004197062.1\|52205_52727_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_004118231.1\|53829_53997_+\|integrase	integrase	NA	NA	NA	NA
WP_004118840.1\|54281_55409_+	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118229.1\|55405_55999_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004118228.1\|55995_56844_+	ABC transporter permease	NA	NA	NA	NA
WP_004118227.1\|56843_57764_+	ABC transporter permease	NA	NA	NA	NA
WP_004152278.1\|57776_59381_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118225.1\|59425_60373_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004118832.1\|60380_62114_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_000427619.1\|64073_65078_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_072143344.1\|65351_66320_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.0e-173	91.6
63809:65149	attR	NA	NA	NA	NA

DBSCAN-SWA_2

78822 : 178060

uncultured_Caudovirales_phage(16.13%)

transposase,protease,integrase

attL 81508:81523|attR 187258:187275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118209.1\|78822_79086_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|79100_79364_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|79607_79889_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|79923_80493_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|80616_83412_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
81508:81523	attL	NA	NA	NA	NA
WP_004152115.1\|83411_83609_+	hypothetical protein	NA	NA	NA	NA
81508:81523	attL	NA	NA	NA	NA
WP_009483782.1\|83846_84596_+	diguanylate cyclase	NA	NA	NA	NA
WP_004152113.1\|84582_85545_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_004143398.1\|87034_87430_-	helix-turn-helix domain containing protein	NA	NA	NA	NA
WP_077253535.1\|87478_88825_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_003026803.1\|89032_89515_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003026799.1\|89502_89769_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_019725033.1\|89975_90170_+	hypothetical protein	NA	NA	NA	NA
WP_019725034.1\|90213_90444_-	hypothetical protein	NA	NA	NA	NA
WP_019725040.1\|90457_90661_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_015065502.1\|90694_91063_-	hypothetical protein	NA	NA	NA	NA
WP_009310053.1\|91106_91601_-	hypothetical protein	NA	NA	NA	NA
WP_015065504.1\|91631_92204_-	hypothetical protein	NA	NA	NA	NA
WP_019725036.1\|92200_92449_-	hypothetical protein	NA	NA	NA	NA
WP_004152101.1\|92806_93157_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152100.1\|93206_93569_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152099.1\|93586_95338_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152098.1\|95385_96675_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152097.1\|96687_97113_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152096.1\|97145_97682_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152095.1\|99578_99941_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_004182005.1\|100016_100562_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_004182006.1\|100570_101284_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004152092.1\|101280_101607_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004196778.1\|101938_102436_+	N-acetyltransferase	NA	NA	NA	NA
WP_004196769.1\|102485_102995_-	major intrinsic family protein	NA	NA	NA	NA
WP_024623170.1\|104737_104917_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004152085.1\|105148_105583_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_004152084.1\|105799_107200_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_001188930.1\|107196_107877_-	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004118344.1\|107931_108861_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_000025662.1\|108865_109246_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_001242438.1\|109285_110182_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000925242.1\|110181_111999_-	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001023257.1\|112232_112682_+	copper resistance protein	NA	NA	NA	NA
WP_004182013.1\|112970_113708_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_000843497.1\|113741_113939_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_023317528.1\|113979_116433_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	9.9e-84	35.5
WP_000758228.1\|116559_117000_-	hypothetical protein	NA	NA	NA	NA
WP_004098958.1\|117086_120233_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_004098959.1\|120243_121536_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_001246153.1\|121649_122003_-	cation efflux system protein CusF	NA	NA	NA	NA
WP_000475512.1\|122031_123417_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001572351.1\|123606_124287_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_003032875.1\|124279_125755_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|126005_126437_+	silver-binding protein SilE	NA	NA	NA	NA
WP_085955172.1\|127865_129072_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|130112_132110_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_004152070.1\|132172_133450_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_080895248.1\|134432_135869_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004197688.1\|136488_136746_+	hypothetical protein	NA	NA	NA	NA
WP_162678358.1\|137418_138387_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.9e-184	98.4
WP_071527918.1\|138406_138718_+	EAL domain-containing protein	NA	NA	NA	NA
WP_032430723.1\|138744_139692_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.3e-12	30.6
WP_022652310.1\|141611_142352_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_022652311.1\|142677_143667_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.0e-103	61.2
WP_022652312.1\|144522_144792_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_004152391.1\|145072_146788_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004152392.1\|146897_149927_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004199214.1\|150033_151059_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
150422:150437	attR	NA	NA	NA	NA
WP_004152394.1\|151055_151835_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
150422:150437	attR	NA	NA	NA	NA
WP_004152396.1\|152122_153004_+	carbapenem-hydrolyzing class A beta-lactamase KPC-3	A0A1B0VBP7	Salmonella_phage	2.8e-73	52.2
WP_004152397.1\|153253_154573_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004152398.1\|154849_156034_-\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
WP_004152400.1\|156537_156897_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
WP_162678359.1\|157696_158677_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_004152402.1\|159262_159883_-	recombinase family protein	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
WP_004152403.1\|159971_162869_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_001067855.1\|162941_163646_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000935452.1\|164721_166026_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_001300294.1\|166064_166733_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|166768_167005_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|167001_167364_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|167381_169076_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001340589.1\|169127_169550_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_072093211.1\|169585_169711_-	mercury transporter	NA	NA	NA	NA
WP_004152334.1\|170442_171153_-	AAA family ATPase	NA	NA	NA	NA
WP_001044770.1\|171226_171643_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|171639_171870_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_072093212.1\|171826_172288_+	hypothetical protein	NA	NA	NA	NA
WP_004153649.1\|172522_172729_+	hypothetical protein	NA	NA	NA	NA
WP_004152336.1\|172774_173083_+	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|173110_173440_+	hypothetical protein	NA	NA	NA	NA
WP_004171440.1\|173465_173864_+	hypothetical protein	NA	NA	NA	NA
WP_004152339.1\|173870_174203_+	hypothetical protein	NA	NA	NA	NA
WP_004152340.1\|174202_174985_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_011977773.1\|175876_176107_-	hypothetical protein	NA	NA	NA	NA
WP_004152341.1\|176198_176672_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004152342.1\|176791_178060_-\|transposase	ISL3-like element ISKpn25 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
187258:187275	attR	NA	NA	NA	NA

DBSCAN-SWA_3

182635 : 194727

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152345.1\|182635_184663_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
WP_004227314.1\|184774_184990_-	hypothetical protein	NA	NA	NA	NA
WP_004152347.1\|185214_185547_-	hypothetical protein	NA	NA	NA	NA
WP_004152348.1\|185923_186898_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152349.1\|186894_188100_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152350.1\|188421_189318_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152351.1\|189718_190990_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152352.1\|190989_191421_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152353.1\|191652_192624_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152354.1\|192626_193298_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|193358_193589_+	hypothetical protein	NA	NA	NA	NA
WP_014343518.1\|193707_193824_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|194025_194727_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP048379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048379_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_1

88109-88323

Unclear

Consensus_repeat	Method
ACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP048379_1

>merge|NZ_CP048379|1|88109-88323|CRISPRCasFinder
ATCCTCTTGGCCCTGCTTGCGCTACGCATAGCAGGGCTACAGTTCTGCGCCGTGCGTATCCCGGGTAAGGCGCCAGGCGCCACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGTGAGTAGCCCAGGTAAGGCGTCAGCCGCTACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGT

>NZ_CP048379|1|1|88109-88323|CRISPRCasFinder
ATCCTCTTGGCCCTGCTTGCGCTACGCATAGCAGGGCTACAGTTCTGCGCCGT	GCGTATCCCGGGTAAGGCGCCAGGCGCCACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGTGAGTAGCCCAGGTAAGGCGTCAGCCGCT
ACCCGGGGATCCCTGCTTGCGCTACGCTTAGCAGGGCTACAGTTCTGCGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_061152928.1\|74669_75392_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP048379.1\|WP_100680985.1\|89268_90573_+\|citrate-transporter	unknown	unknown	gnl\|CDD\|273267
NZ_CP048379.1\|WP_100680982.1\|94641_96723_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP048379.1\|WP_061152935.1\|88439_89204_+\|CDP-diacylglycerol-diphosphatase	unknown	unknown	gnl\|CDD\|235485
NZ_CP048379.1\|WP_002922903.1\|93580_94591_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|224411
NZ_CP048379.1\|WP_100680981.1\|96728_97418_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	unknown	unknown	gnl\|CDD\|236837
NZ_CP048379.1\|WP_162676805.1\|79065_80763_-\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_CP048379.1\|WP_136028119.1\|82579_83782_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP048379.1\|WP_012967047.1\|85428_86280_-\|aquaporin	unknown	unknown	gnl\|CDD\|238204
NZ_CP048379.1\|WP_008806812.1\|86722_86968_+\|septal-ring-assembly-protein-ZapB	unknown	unknown	gnl\|CDD\|185320
NZ_CP048379.1\|WP_061152937.1\|92254_92683_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP048379.1\|WP_074386944.1\|97422_99543_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236843
NZ_CP048379.1\|WP_008806808.1\|80903_82295_-\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|225142
NZ_CP048379.1\|WP_002922909.1\|90665_91433_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP048379.1\|WP_100630959.1\|91542_92142_-\|YiiQ-family-protein	unknown	unknown	gnl\|CDD\|369310
NZ_CP048379.1\|WP_074386939.1\|77263_78823_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273925
NZ_CP048379.1\|WP_136072904.1\|75871_77251_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|133432
NZ_CP048379.1\|WP_162676804.1\|72191_74510_+\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NZ_CP048379.1\|WP_061152933.1\|83895_85407_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP048379.1\|WP_023298349.1\|92683_93430_-\|ferredoxin--NADP(+)-reductase	unknown	unknown	gnl\|CDD\|182844

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_061152928.1\|74669_75392_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.25583e-21
NZ_CP048379.1\|WP_100680985.1\|89268_90573_+\|citrate-transporter	gnl\|CDD\|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	4.99476e-24
NZ_CP048379.1\|WP_100680982.1\|94641_96723_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP048379.1\|WP_061152935.1\|88439_89204_+\|CDP-diacylglycerol-diphosphatase	gnl\|CDD\|235485	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional.	9.05425e-156
NZ_CP048379.1\|WP_002922903.1\|93580_94591_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|224411	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism].	0
NZ_CP048379.1\|WP_100680981.1\|96728_97418_-\|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH	gnl\|CDD\|236837	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional.	8.16991e-174
NZ_CP048379.1\|WP_162676805.1\|79065_80763_-\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	3.14482e-18
NZ_CP048379.1\|WP_136028119.1\|82579_83782_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP048379.1\|WP_012967047.1\|85428_86280_-\|aquaporin	gnl\|CDD\|238204	cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.	7.80658e-82
NZ_CP048379.1\|WP_008806812.1\|86722_86968_+\|septal-ring-assembly-protein-ZapB	gnl\|CDD\|185320	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional.	1.2414e-20
NZ_CP048379.1\|WP_061152937.1\|92254_92683_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	2.66266e-24
NZ_CP048379.1\|WP_074386944.1\|97422_99543_-\|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase	gnl\|CDD\|236843	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase.	0
NZ_CP048379.1\|WP_008806808.1\|80903_82295_-\|uracil-xanthine-permease	gnl\|CDD\|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	6.6234e-142
NZ_CP048379.1\|WP_002922909.1\|90665_91433_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	3.18645e-141
NZ_CP048379.1\|WP_100630959.1\|91542_92142_-\|YiiQ-family-protein	gnl\|CDD\|369310	pfam07305, DUF1454, Protein of unknown function (DUF1454). This family consists of several Enterobacterial sequences of around 200 residues in length which are often known as YiiQ proteins. The function of this family is unknown.	4.15903e-97
NZ_CP048379.1\|WP_074386939.1\|77263_78823_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.92507e-107
NZ_CP048379.1\|WP_136072904.1\|75871_77251_-\|glycoside-hydrolase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	5.6008e-141
NZ_CP048379.1\|WP_162676804.1\|72191_74510_+\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_CP048379.1\|WP_061152933.1\|83895_85407_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP048379.1\|WP_023298349.1\|92683_93430_-\|ferredoxin--NADP(+)-reductase	gnl\|CDD\|182844	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.	0

>NZ_CP048379.1|WP_008806812.1|86722_86968_+|septal-ring-assembly-protein-ZapB
MTMSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQDRLQALLGRMEEV
>NZ_CP048379.1|WP_012967047.1|85428_86280_-|aquaporin
MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISIIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDGRKVVPFIISQFAGAFCAAALVYGLYYNLFLDYETTHHMVRGSVESLDLAGIFSTYPNPHINFVQAFAVEMVITAILMGVILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDIGPKAFAWLAGWGDVAFTGGKDIPYFLVPLCAPVVGAALGAFSYRKLIGRHLPCDTCVDEEQQSPSSSTTQHKASL
>NZ_CP048379.1|WP_061152933.1|83895_85407_-|glycerol-kinase-GlpK
MTDKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPGWVEHDPMEIWASQSSTLVEVLAKADINSDEIAAIGITNQRETAIVWERETGKPIYNAIVWQCRRTAEICEQLKRDGMEEYIRKATGLVVDPYFSGTKVKWILDHVEGSRERAKRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHELDWDDKMLDALDIPRAMLPEVRKSSEVYGQTNIGGKGGTRIPIAGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVASTHGLLTTIACGPRGEVNYALEGAVFMAGASIQWLRDEMKLISDAFDSEYFATKVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNFRYSGWKKAVKRALAWEEHDEA
>NZ_CP048379.1|WP_136028119.1|82579_83782_+|sodium/glutamate-symporter
MFHLDTLSTLVAATLVLLLGRKLVQTVPFLKKYTIPEPVAGGLLVALALLVLKKSMDIEIDFDMSLKDPLMLAFFATIGLNANLASLRAGGKVLGTFLIVVVGLLLLQNALGIGMATLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSSSPDGTPDDQVAPTAFEKPDVGRVITSLVLIESIALIAICLTVGKVVAQLLAGSVFELPTFVCVLFIGVILSNSLALAGLYRVFDRAVSVLGNVSLSLFLAMALMSLKLWELASLALPMIIILAVQSLAMALYAVFVTYRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKLYLLLPMFG
>NZ_CP048379.1|WP_008806808.1|80903_82295_-|uracil-xanthine-permease
MSVNTAESENAQPVAHKSASELIYRLEDRPPLPQTLFAAFQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRVLHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMADHTFGAPKNLLLAGIVLALIIILNRQRNPYLRIASLVIAMAAGYLAAWFLDMLPANTAPTNSSLITVPTPLYYGLGIDWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPDWLKNLLSSGIAAGGITAIVLNLIFPPEKA
>NZ_CP048379.1|WP_162676805.1|79065_80763_-|AsmA-family-protein
MKFLGKLILWLLVALLLVIVGAWFLLQTHWGARQASAWLSNGTGWQVSFDAMEHDLSSPLHVQLQNVTFGREGKPATLVAKTVDIGFSTRQFSDPLHADEIVLNDGTLNLSPHSAALPFAADRLMLRNMAFNSPETGWALSAQRVTGGVSPWAPEAGNVLGNTAQIQMSAGSMTLNGVEASNVLIQGKIDHGEVTLSTLGADVARGTLTGNAKRSADGSWLVDNLQLNEIRLQSASSLADFFAPLTTVPSLQIGRLDITDARLQGPDWAVTDLDLSLRNLTLSHGGWQSEDGTLSMNASEFIYGSLHFFDPILNAEFSPQGIALRQFTSRWEGGMVRTSGNWLRAGNALVLDDTAFAGLEYTLPANWKQLWMEPMPAWLQSLTLKKFSASRNLIIDVDPAFPWQITALDGYGGELQLVKNGSWGVWNGSATLNAAAATFNRIDVRRPSLKLSATASTVNITELSAFTERGILQATAAVSQLPQRQVNLSLNGRGVPLGILQAWGWPSLPINGDGNLQLTASGSVRADVPLKPTVNGQLSAVNMEKQQVAQTMRNGEVNTAPAAPQ
>NZ_CP048379.1|WP_074386939.1|77263_78823_-|PTS-transporter-subunit-EIIC
MPEIRQRILENMQKFSRAMIGAVLFLPVIGLILALSSVLTNPTLIAETSFLHQLGQMLGDTFWPLFGNLGLLFCVGISYGLAKDKKTEVALVSVMCFIMFLGANHSWLEHTHGLAEKINGEYYGTGQTQLLGFVVVDMGVFLGIILGCTIAWVHNKVSAIELPGALSMYGGAKLTLVAMTPVVIFYAIAFTWIWPFMTHGISALTGFMKNAGVAGVFVYGFFEKFLIPTGLHHFVWSPFQLTQIGGTLNVDGQVVSGTQAIFLAYMRHPDLTPVMNDALRFSQQGMTTIFGLAGASLAFYHTAKPEKKVMAKAILLPAIITSMLTGITEPIEFTFLFVSPLLWVIHATLTAASQAICDIFTVRPWGASGLIEFLIYNLPLPVSLTRWPGYVLIGIGQFAVYYVIFRTLVVKLNLKTPGREDDENVKLYSKAEYRQKVAQPQSVTDDIIRGLGGKANILSVDNCFTRLRVAVRDMALVDDAQLKNTGANGVVRNRNEVQVIYGVKVGQVRSRVDNWLAEN
>NZ_CP048379.1|WP_136072904.1|75871_77251_-|glycoside-hydrolase
MKLTVLGGGGVRSAFLAKSLAYNAHRIGLTEVVFLDNSADNLAIFGEIARYVFNTIRPDIQFSTTTDPVAALQDANYIITTLRVGGDESRIRDERIALQHNTLGQETTGAGGFAMAMRSIPAILRYCRLIEEHAAEDAILFNFTNPSGLVTEAIIKSGFKRRVYGICDAPSELIRELPAILGCEEHDLSVECYGLNHFSWFTHFTVRGEEVTERLIASPELYQKTAMQYFSPELVRLCDNQLLNEYLYYYYYREVALKAIQEAGETRGEQIARINHEMREALRTVDARTQPEAAFSIWMQHYLRRENSYMQNESQQEKFHTREPLTLRQFIEEPDTGGYAGVALDILEAVNSTTTKRIVVSIQNNDTLDFLRPDDVIEISCDLSRDGLKPVTPVKVPAAQKNMISCVKEYERLAVAAILQQDKSLAVRALMAHPLIGSYSLAKTLVEAYLDDEQFAAWQ
>NZ_CP048379.1|WP_061152928.1|74669_75392_+|MurR/RpiR-family-transcriptional-regulator
MDLENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVTNDIDYMSVQPEEALTPLLASLAQQRVLIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSVRSNS
>NZ_CP048379.1|WP_162676804.1|72191_74510_+|alpha-xylosidase
MKISDGNWLIQPGLNLIQPVQVYEVEQQGNEMVVYAAPRDVRERAWQLDTPLFTLRFFSPQEGIIGVRMEHFQGALDNGPHYPLNVQKDVHVEIENTAEFAELKSGSLSVRVTKGEFWALDFLRDGVRITGSQLKNNGYVQDSKTQRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNEDGGTSTEQSYKNIPFYLTNRGYGVLVNHPQRVSFEVGSEKVSKVQFSVEGEHLEYFVIDGPTPKAVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERHLPLHVFHFDCFWMKAFQWCDFEWDPQTFPDPEGMIKRLKAKGLKVCVWINPYIGQRSPVFKELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPEACQWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAFIYNELVWKVLKETVGEQEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGMSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDEESCDVVRHFTQLKCRMMPYLYRQAALANEFGTPMLRAMMLEFPDDPACDYLDRQYMLGDSVLVAPVFSEAGEVQFYLPEGRWTHLWHNDELPGSRWHKQHHDALSLPVYVRDNTLLALGNNDQKPDYAWHEGTAFQLFQLEDGREARCDVPAADGSTIFTLKAKRQGNTITVSGEGEARGWTLCLRNIPQIAGVQGGTQAGSELGVVVSAEGNALTITL
>NZ_CP048379.1|WP_061152935.1|88439_89204_+|CDP-diacylglycerol-diphosphatase
MRRVRYFLLALLVAILAALAGGYYWLHSGNPDALRKIVLQQCVPHQQQQQNPSPCAEVNLKGGYVLFKDRNGPLQYLLMPTYRINGTESPLLLDPLTPNFFWQAWQGREIMSQRHGAPVPDNAVSLAINSRSGRTQNHFHIHISCLRPDVRAQLDKDAAAVSSRWLPLPGGLQGHEYLARRVTEAELAQRSPFLMLAEEVPEAREHMGRFALAMAQQSDGSLVLLATERNLLTLNRASAEEIQDHRCTILNASH
>NZ_CP048379.1|WP_100680985.1|89268_90573_+|citrate-transporter
MSLWLTHPLFLPSLIVGVTIVLWATSLLPEFITALLFFAAAMMAKIAPPEVIFGGFASSAFWLVFSGFVLGIAIRKTGLADRAAQALSARLTDSWPRMVGSVVLLSYALAFVMPSNMGRIALLMPIVAAMARRAGIVDGSRGWFGLALAVGFGTFQLSATILPANVPNLVMSGAAEGSYGIHLNYVPYLLLHTPVLGWLKGAVLVALICWLFPGKPHPPRDLAPLPPMSRDEKRLAWLLAVVLTLWVTESWHGVGPAWTGLAAAVVTLLPRVGFINGEEFASGVNMRTCIYVAGILGLAITVTQTGIGGAVGNALLQVMPLDKDNPFTSFLALTGITSALNFMMTANGVPALYTTFAQSFADATGFPLLSVIMIQVLGYSTPLLPYQASPIVVAMGLGKVPARAGMQLCLALAAVSYLILLPLDYAWYQLLGKL
>NZ_CP048379.1|WP_002922909.1|90665_91433_-|triose-phosphate-isomerase
MRHPLVMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKKA
>NZ_CP048379.1|WP_100630959.1|91542_92142_-|YiiQ-family-protein
MKKWTILCLSGLMGLTVSPHALSAESESATAAPYLLSGAPSFDLSISQFREKFNADNPKLPLNEFRSIATSRDQANLTRAASKINENLYASTALERGTLKIKSMQITWLPIQGPEQKAAKAKALEYMSAMIRAFVPTLSPAQSQQKLQKLLTAGKGKRYFADTEGAVRYVVADHGEKGLTFAIEPIKLALSETLEGNNK
>NZ_CP048379.1|WP_061152937.1|92254_92683_+|DUF805-domain-containing-protein
MTLQQWLFSIKGRIGRRDFWIWIAIWLVTMSALFTLAGSNLLNLQTAAFIIVCLLWPTAAVVVKRLHDRGKSGLWALLMILAWMLLAGNWAMLPQVWQWGVGRFVPTLIIVMLLIDLGAFVGTQGENKFGKETQDVRWKADA
>NZ_CP048379.1|WP_023298349.1|92683_93430_-|ferredoxin--NADP(+)-reductase
MADWVSGKVTKVEYWTDALFSLYVRAPVHPFTAGQFTKLGLEIDGERVQRAYSYVNAPGNPDLEFYLVTVPEGKLSPRLAALKPGDEVLVVSEAAGFFVLDEVPDCDTLWMLATGTALGPYLSILQEGKDLERFNNLVLVHAVRYAADLSYLPLMRELEQRYAGKLRIQTVVSRETVEGSLTGRVPFLIETGALEEAVGLAMNTDTSHVMLCGNPQMVRDTQQLLKETRQMTKHLRRRPGHMTAEHYW
>NZ_CP048379.1|WP_002922903.1|93580_94591_-|class-II-fructose-bisphosphatase
MKRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIMLNLVNIDGTIVIGEGEIDEAPMLYIGEKVGTGKGDAVDIAVDPIEGTRMTAMGQANALAVMAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLEENLHNIARALNKPLGELTVTVLAKPRHDAVIAQLQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARHHVKGDNEENRRIGENELARCKTMGIEAGKVLRLDEMARSDNVVFSATGITKGDLLDGITRKGNMATTETLLIRGKSRTIRRIQSIHYLDRKDPDIQQHIL
>NZ_CP048379.1|WP_100680982.1|94641_96723_-|ATP-dependent-DNA-helicase-RecG
MSARLLDAVPLSSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYATVEGEVLNSNITFGGRRMMTCQISDGTGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDMSTPELQETLTPVYPTTEGIKQATLRKLTDQALELLETCAISELLPPELAQGMMSLPEALRTLHRPPPSLQLSELESGKHPAQQRLILEELLAHNLSMLALRAGAQRYHALPLGANDTLKNQLLASLPFKPTGAQARVTAEIERDMALDVPMMRLVQGDVGSGKTLVAALAAVRAIAHGKQVALMAPTELLAEQHANNFRSWFEPLGIEVGWLAGKQKGKARQAQQDAIASGEVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRSDIIDRVRNACTHEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPDVQRIARHIHERYPLQAQALIERWMPETERYSNA
>NZ_CP048379.1|WP_100680981.1|96728_97418_-|tRNA-(guanosine(18)-2'-O)-methyltransferase-TrmH
MNSKRYERICEMLARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEVHAVWPSSRMRTMASAAAGSNSWVQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLFEGGYPVLARVARQKGLPYPHVNEQGEVEADAAWWATMQATR
>NZ_CP048379.1|WP_074386944.1|97422_99543_-|bifunctional-GTP-diphosphokinase/guanosine-3',5'-bis-pyrophosphate-3'-pyrophosphohydrolase
MYLFESLNQLIQNYLPEEQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDADVCYRVLGQMHSLYKPRPGRFKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGGESSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPGARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPPENIQRELDRMKLASLDDLLAEIGLGNAMSVVVAKNLQQGEASAAPVPANASNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQEFITEIKVDMFNHQGALANLTAAINTASSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRNRN

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Crispr_ID: NZ_CP048379_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_2

3585836-3585941

Orphan

Consensus_repeat	Method
TCCCCGGTGGCGCTACGCTTACCGGGGCTACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048379_2

>merge|NZ_CP048379|2|3585836-3585941|CRISPRCasFinder
TCCCCGGTGGCGCTACGCTTACCGGGGCTACCTACCACCGCCAAAGGGTAGCCCGGATAAGGCGCTGTGATCATCCCCGGTGGCGCTACGCTTACCGGGGCTACCT

>NZ_CP048379|2|2|3585836-3585941|CRISPRCasFinder
TCCCCGGTGGCGCTACGCTTACCGGGGCTACCT	ACCACCGCCAAAGGGTAGCCCGGATAAGGCGCTGTGATCA
TCCCCGGTGGCGCTACGCTTACCGGGGCTACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_162493277.1\|3579366_3579681_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP048379.1\|WP_162678319.1\|3593424_3594315_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP048379.1\|WP_061155111.1\|3586145_3586541_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|226278
NZ_CP048379.1\|WP_032729920.1\|3591561_3592884_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP048379.1\|WP_012968592.1\|3591045_3591540_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP048379.1\|WP_162677776.1\|3579679_3579922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048379.1\|WP_047666343.1\|3586537_3587176_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP048379.1\|WP_162677777.1\|3581865_3585828_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP048379.1\|WP_008805949.1\|3575870_3576998_-\|iron-uptake-system-protein-EfeO	unknown	unknown	gnl\|CDD\|236677
NZ_CP048379.1\|WP_162677775.1\|3574582_3575866_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_CP048379.1\|WP_004204507.1\|3587461_3588553_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP048379.1\|WP_071839099.1\|3573289_3574348_-\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|182529
NZ_CP048379.1\|WP_061155109.1\|3579935_3581444_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
NZ_CP048379.1\|WP_162677778.1\|3589644_3590448_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP048379.1\|WP_002898927.1\|3571743_3572421_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP048379.1\|WP_004204505.1\|3589255_3589648_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP048379.1\|WP_008805948.1\|3577049_3577880_-\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|272930
NZ_CP048379.1\|WP_008805939.1\|3590444_3591035_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP048379.1\|WP_075211465.1\|3578117_3579335_+\|nucleoside-permease	unknown	unknown	gnl\|CDD\|224883
NZ_CP048379.1\|WP_008805941.1\|3588552_3589263_+\|pyrimidine-utilization-protein-B	unknown	unknown	gnl\|CDD\|163356

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_162493277.1\|3579366_3579681_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	3.36192e-52
NZ_CP048379.1\|WP_162678319.1\|3593424_3594315_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.08446e-11
NZ_CP048379.1\|WP_061155111.1\|3586145_3586541_+\|DUF1311-domain-containing-protein	gnl\|CDD\|226278	COG3755, COG3755, Uncharacterized protein conserved in bacteria [Function unknown].	1.49494e-28
NZ_CP048379.1\|WP_032729920.1\|3591561_3592884_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP048379.1\|WP_012968592.1\|3591045_3591540_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	7.36125e-91
NZ_CP048379.1\|WP_008805949.1\|3575870_3576998_-\|iron-uptake-system-protein-EfeO	gnl\|CDD\|236677	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional.	0
NZ_CP048379.1\|WP_162677777.1\|3581865_3585828_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP048379.1\|WP_047666343.1\|3586537_3587176_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.089e-148
NZ_CP048379.1\|WP_162677775.1\|3574582_3575866_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
NZ_CP048379.1\|WP_004204507.1\|3587461_3588553_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP048379.1\|WP_071839099.1\|3573289_3574348_-\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|182529	PRK10536, PRK10536, phosphate starvation-inducible protein PhoH.	0
NZ_CP048379.1\|WP_061155109.1\|3579935_3581444_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
NZ_CP048379.1\|WP_162677778.1\|3589644_3590448_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	9.78158e-109
NZ_CP048379.1\|WP_002898927.1\|3571743_3572421_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	7.98405e-59
NZ_CP048379.1\|WP_004204505.1\|3589255_3589648_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	4.40918e-85
NZ_CP048379.1\|WP_008805948.1\|3577049_3577880_-\|FTR1-family-protein	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	1.1812e-93
NZ_CP048379.1\|WP_008805939.1\|3590444_3591035_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.32192e-134
NZ_CP048379.1\|WP_075211465.1\|3578117_3579335_+\|nucleoside-permease	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.62634e-140
NZ_CP048379.1\|WP_008805941.1\|3588552_3589263_+\|pyrimidine-utilization-protein-B	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	3.50447e-163

>NZ_CP048379.1|WP_162677777.1|3581865_3585828_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAASRIDRTPHWLIKQAIFNYLEKLENDETLPELPALLSGAANESDEAGSPAEEPYQPFLEFAEQILPQSVSRAAITAAWRRPETDAVPMLLEQARLPQPLGEQAHKLAYQLAEKLRNQKTASGRAGMVQSLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNETSLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPFVIDALIDLATRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVVGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADNTLPLDELVADPVSAVEKLAQQEGQAGLPHPKIPLPRDLYGSGRSNSAGLDLANEHRLASLSSSLLNSALHKWQALPMLEQPVAEGEMQPVVNPAEPKDIVGYVREASDAEVQQALTSAINNAPIWFATPPQERAAILERAAVLMESQMPTLMGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGVAILLEAGVPPGVIQLLPGRGETVGAALTSDERVRGVMFTGSTEVATLLQRNIASRLDSQGRPTPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQEEVADHTLTMLRGAMSECRMGNPGRLTTDIGPVIDTEAKENIERHIQAMRAKGRTVYQAVRENSEDAREWRHGTFVPPTLIELDSFDELKKEVFGPVLHVVRYNRNELDKLVEQINASGYGLTLGVHTRIDETIAQVTGSAKVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLSSRPQGAVGVTFSRQDAERPLDAQLKTLLEKPLLALQQWAAGRPELQALCQQYSEQAQSGTQRLLPGPTGERNTLTLMPRDRVLCVADNEQDALIQLAAALAVGCEVLWPDSALQRDLVKKLPRDVSERIRFAKAEQLPGQAFDAVIYHGDSDQLRELCEQVAARDGAIVSVQGFARGETNLLLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP048379.1|WP_061155109.1|3579935_3581444_-|sodium/proline-symporter-PutP
MAISTPMLVTFIVYIFGMVLIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEVNNNALTLPDYFTGRFEDKSRVLRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATIIYTFVGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENIDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNNNPSQAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKNAGQKELVWVGRMMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMVIGALTVIVWKQFGWLGLYEIIPGFIFGSLGIAVFSLLDKAPSASMQQRFAEADAHYHTPPPVRATAE
>NZ_CP048379.1|WP_162677776.1|3579679_3579922_+|hypothetical-protein
MDRSAGQAPGFAARVDELPPATQPLSNPASTSAIAPCLNVIFAILIVISQEISADFQIISKGYNIRTRQQAKKSPPAAGS
>NZ_CP048379.1|WP_162493277.1|3579366_3579681_-|DUF3574-domain-containing-protein
MVQTTLYFGLSRPAGKDITAEEWQQFVDRDVTPRFRDGLTVFDARGQWLGQNGQVVREQSKALMVIHGNDAQSEAGIEALRQGYKSRFAQESVMRVDQPVCVQF
>NZ_CP048379.1|WP_075211465.1|3578117_3579335_+|nucleoside-permease
MAALLTCEKNNMTAFFHFLLALVVILALAWLVSYDRQKIRIRYILQLIIIEIALAFFFLHAESGLWLVKNISGFFASLLGFAAEGTNFVFGGMSEKGLAFIFLGVLCPIVFISALIGILQHWRILPIFIRVIGTLLSKVNGMGKLESFNAVSSLILGQSENFIAYKGVLGDLSSRRLFTMAATAMSTVSLSIVGAYMTMLDAKYVVAALILNMFSTFIVLSVINPTRPGSEQEIKLEKLHESQSFFEMLGEYILAGFKVAMIILAMLIGFIALISAINALFATLFGLSFQQILGYVFYPLAWLIGIPLSDALNAGSIMATKLVANEFVAMIELQKIAASMTPRGLGILSVFLVSFANFASIGIIAGAIKGLNEPQGNIVSRFGLRLVYSATLVSLLSASFAGLVL
>NZ_CP048379.1|WP_008805948.1|3577049_3577880_-|FTR1-family-protein
MFVPFLIMLREGLEAALIVSLIASYLKRTQRGNWIGVMWIGVILAAALCLGLGIFINETTGEFPQREQELFEGIVAVIAVVILTWMVFWMRNVSRNVKQQLEQAVDKALQRGNHHGWALVMMVFFAVAREGLESVFFLLAAFQQDVGIWPPLGALLGLATAIVLGFLLYWGGIRLNLGVFFKWTSLFILLVAAGLAAGAIRAFHEAGLWNLFQDTAFDLSNVLSTHTLFGTLLEGIFGYQETPSVSEVAVYLLYLIPALVLFALPPRNNTTASRAA
>NZ_CP048379.1|WP_008805949.1|3575870_3576998_-|iron-uptake-system-protein-EfeO
MMIHFRRNALRATVAALLSSALGAQAADIPQVKVTVNDKQCEPMQVTVKAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFTQKLTANLQPGEYDMTCGLLTNPKGKLIVTGEATKDAAKADAVLSLGDAITAYKAYVTAETAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEKKAEDPKFTGFHRLEKALFGDNSVKGMEKYADQLNSDVLELQKRISELAFPPSKVVGGAAGLIEEVAASKISGEEDRYSHTDLWDFQANIDGAQKIVDLLRPQLQKENSALLAKVDANFKKVDSILSKYRTKDGFETYDKLTTADRNALKGPITTLAEDLAQLRGILGLD
>NZ_CP048379.1|WP_162677775.1|3574582_3575866_-|deferrochelatase/peroxidase-EfeB
MAQQKPHDVNEPSRRRLLKGIGALGGALAITGGCPVAHAAKAESSPGTLTPDARQEKQPFYGRHQAGILTPQQASMMLVAFDVLASDKADLERLFRLLTQRIAFLTQGGPAPDTPNPRLPPMDSGILGAWIAPDNLTMTVSVGHSLFDERFGLADKAPKKLQPMTRFPNDSLDAVLCHGDLLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSAARSKGKETPINLLGFKDGTANPASHDSALMDKVVWVTADQDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGRDKHSGAPLGMKNEHDTPDYSKDPGGETIALDSHIRLANPRTPETQSSLMMRRGYSYSLGVTNAGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEYVKPIGGGYFFVLPGVVDEKHYLGESLLQA
>NZ_CP048379.1|WP_071839099.1|3573289_3574348_-|phosphate-starvation-inducible-protein-PhoH
MVRSRTGQRKTTDRTLQHGSPASGSDFLTLSPSASNYYNLGRVRGARSRDSLSVLPASNGLQGSQTSIVRAHSRVDVDACDVNLQRKVLSMGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEAIGMARDSRDTSPIEARNEAQAHYLNAIDNKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVKRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPSGVRSGLSDALARFEEDEMIGIVRFTTDDCVRSALCQRTLKAYY
>NZ_CP048379.1|WP_002898927.1|3571743_3572421_+|isochorismatase-family-protein
MSTPANFNGARPVIDVNDTAMLLIDHQSGLFQTVGDMPMPELRARAAALAKMASLAGIPVITTASVPQGPNGPLIPEIHENAPHAKYIARKGEINAWDNPEFVAAVKATGRKTLIIAGTITSVCMAFPAIAAVADGYKVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQRTWNRPDAAEWAEVYTKVFPAYQLLIESYSKAQDVVKNNEQLDSQR
>NZ_CP048379.1|WP_061155111.1|3586145_3586541_+|DUF1311-domain-containing-protein
MKRTLFAVMALLASGAALADECSNANTQTEMNQCAAAQYQAADKKLNDTWQQALQRAVGKQQTLLKQAQQAWIALRDADCAFLASGAEGGSMQPMLVSQCMTDKSVERESFLSSLLQCEDGDQSCPLPPAN
>NZ_CP048379.1|WP_047666343.1|3586537_3587176_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKKNGKRSQAVSAKKEAILAAALEAFSQFGIHGTRLEQVAERAGVSKTNLLYYYPSKEALYVAVLQQILAIWLAPLKAFREDISPLVAIREYIRLKLEVSRDHPQASKLFCLEMLQGAPLLMGELTGDLKALVDEKSAIVSGWIDRGKLAPVDPQHLIFMIWATTQHYADFATQVEAVTGATLQDAAFFEQTVDNVQRMIIEGIRVR
>NZ_CP048379.1|WP_004204507.1|3587461_3588553_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSKIQIYATAATLTLPPAIVARMASTIDSISGGRFGVNLVTGWQKPEYDQMGMWPGDDYFASRYDYLTEYVQVLRDLWGTGRSDFKGDYFTMNDCRVSPRPSQPMKVICAGQSDAGMAFSAQHADYNFCFGKGVNTPTAFAPTAARMMQAAEKTGRDVGSYVLFMVIADETDEAARAKWEHYKAGADEEALAWLTEQSQKDTRSGSDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGTDGVLLTFDDFLAGIDAFGERIQPLMRCRDHIAPVTREVA
>NZ_CP048379.1|WP_008805941.1|3588552_3589263_+|pyrimidine-utilization-protein-B
MITLPARPESLTFAPQQSALIVVDMQNAYASQGGYLDLAGFDVSATRPVIDNINTAVAAARAAGMLIIWFQNGWDDQYVEAGGPGSPNYHKSNALKTMRQRPELQGKLLAKGGWDYQLVDELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGIVLEDATHQAGPAFAQQAALFNIETFFGWVSDVESFCHALSPATPLSLAKEKRYA
>NZ_CP048379.1|WP_004204505.1|3589255_3589648_+|pyrimidine-utilization-protein-C
MPKQVIIPPGTTTPIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIKSVIETAGGSMADVTFNSIFITDWTNYAAINEVYAEFFPGDKPARFCIQCGLVKPDALVEIASVAHIGTPT
>NZ_CP048379.1|WP_162677778.1|3589644_3590448_+|pyrimidine-utilization-protein-D
MMRLNIAPAPWPGAPVVVLSAGLGGGGGYWLAQRAALEAQYQLVSYDHNGTGENAGPLPADYSMATMAQELLSALQAAGITRFALVGHALGALIGLQLALDRPEAVSALVLVNGWLTLSPHTRRCFLVRERLLHAGGAQAWVEAQPLFLYPAEWMAARLPRLEAEDALAISHFQGKENLLKRLQALKQADFSRRAAAIACPTLIVSAADDLLVPASCSRVLQTAIPGSLRVEMPWGGHACNVTDADTFNTILCDGLAAMLPVAREIE
>NZ_CP048379.1|WP_008805939.1|3590444_3591035_+|malonic-semialdehyde-reductase
MNDAINHTACETLFTQARTHNGWLDKPVSDAQLQAIWDLMKMGPTSANCSPARIVFVRSAEGKEKLRPTLSSGNLQKTMQAPVTAIVAWDSAFYDRLPTLFPHGDARSWFTSSPQLAEETAFRNSSLQAAYLIFACRALGLDTGPMSGFDREKVDAAFFADNGWKSNLLVNIGYGDPGKLYGRLPRLSFDEACLLA
>NZ_CP048379.1|WP_012968592.1|3591045_3591540_+|pyrimidine-utilization-flavin-reductase-protein-F
MELADKASFRDAMAHVGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRSASVWPVFSEHHTLCVNTLAAGQEALSTLFGGKTAMDERFAAADWQTGATGCPRLEAALVSFDCRIDQRVSVGTHDILFCHVVAITRHPEPRGLMWFDRGYHTLMRPAC
>NZ_CP048379.1|WP_032729920.1|3591561_3592884_+|pyrimidine-utilization-transport-protein-G
MALFDFPRWKLTSPAAESGVVAPDERLSAGQTLVMGVQHAVAMFGATVLMPLLMGLDPNLSILMSGVGTLLFFVVTGGRVPSYLGSSAAFVGVVIAITGFNGQGLNPHLSVALGGIIACGLVYTLIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVRSVSASAFDSWMAVLTVLCIGIVAVFTRGMLQRLLILVGLIVACALYALLANGFGLGKPLDFSSLAQAAWFGLPHFTTPSFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAALIAMLLGFSPKFGALIHTIPGPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNSNLIMVSVTLVLGAGDFALSLGGFTLGGIGTATFGAILLHALLHRGTREAKEARVTPV
>NZ_CP048379.1|WP_162678319.1|3593424_3594315_-|DMT-family-transporter
MITMFWGGTFLAVQYAVSLSGPLFFVGLRFATAALAVGLLSLRTLRGLTWLEVKAGVAIGVAIALGYGLQTWGLQSISSSKSAFITAMYVPLVPLLQWLCLGRMPGVMSCVGIVLAFIGLILLAGPENNLLALGVGEMITLASALAIAAEIILISAWAGKVDVRRVTVVQLATASLVAFAAMKPAGEAVPPLTPALLGVALGLGIFSAIIQVTMNWAQRSVSPTRATLIYTGEPVWAGIFGRLAGERLPLLALLGCVLILAGVLVSELKWKRKSPPQIATNDDAQPLPDLADRREP

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Crispr_ID: NZ_CP048379_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_3

4039836-4039958

Orphan

Consensus_repeat	Method
TTGCCCTCACCCCAACCCTCTCCCAAAGGGAGAGGGAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048379_3

>merge|NZ_CP048379|3|4039836-4039958|CRISPRCasFinder
TTGCCCTCACCCCAACCCTCTCCCAAAGGGAGAGGGAGCAACCCCTAAAAAAGGCAACTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAACCCTCTCCCACAGGGAGAGGGAGCAA

>NZ_CP048379|3|3|4039836-4039958|CRISPRCasFinder
TTGCCCTCACCCCAACCCTCTCCCAAAGGGAGAGGGAGCAA	CCCCTAAAAAAGGCAACTGTCATTGCCTTTTTGCGTTTACC
TTGCCCTCACCCCAACCCTCTCCCACAGGGAGAGGGAGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_008805597.1\|4040122_4041364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP048379.1\|WP_136072219.1\|4037495_4038524_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP048379.1\|WP_100697765.1\|4034794_4036153_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340870
NZ_CP048379.1\|WP_061155383.1\|4042552_4043551_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP048379.1\|WP_008805596.1\|4041467_4042532_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP048379.1\|WP_012968714.1\|4033874_4034684_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP048379.1\|WP_061155374.1\|4027867_4028476_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP048379.1\|WP_012968721.1\|4043547_4045050_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP048379.1\|WP_008805598.1\|4038625_4039825_+\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561
NZ_CP048379.1\|WP_162677854.1\|4028927_4030190_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP048379.1\|WP_002893905.1\|4047563_4047968_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP048379.1\|WP_162677856.1\|4048254_4050360_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP048379.1\|WP_162678331.1\|4032802_4033753_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380501
NZ_CP048379.1\|WP_162677855.1\|4031418_4032657_+\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP048379.1\|WP_100697763.1\|4036178_4037447_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366031
NZ_CP048379.1\|WP_061155376.1\|4030186_4031422_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377939
NZ_CP048379.1\|WP_002893903.1\|4047964_4048162_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP048379.1\|WP_061155386.1\|4047286_4047589_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP048379.1\|WP_074386573.1\|4046359_4047103_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP048379.1\|WP_061155384.1\|4045213_4046302_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_008805597.1\|4040122_4041364_-\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	2.79319e-148
NZ_CP048379.1\|WP_136072219.1\|4037495_4038524_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	1.6686e-150
NZ_CP048379.1\|WP_100697765.1\|4034794_4036153_+\|MFS-transporter	gnl\|CDD\|340870	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters. Organophosphate:Pi antiporters (OPA) are integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The OPA family is also called solute carrier family 37 (SLC37) in vertebrates. Members include glucose-6-phosphate (Glc6P) transporter (also called translocase or exchanger), glycerol-3-phosphate permease, 2-phosphonopropionate transporter, phosphoglycerate transporter, as well as membrane sensor protein UhpC from Escherichia coli. UhpC is both a sensor and a transport protein; it recognizes external Glc6P and induces transport by UhpT, and it can also transport Glc6P. Vertebrates contain four SLC37 or sugar-phosphate exchange (SPX) proteins: SLC37A1 (SPX1), SLC37A2 (SPX2), SLC37A3 (SPX3), and SLC37AA4 (SPX4). The OPA/SLC37 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.78526e-128
NZ_CP048379.1\|WP_061155383.1\|4042552_4043551_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.20876e-68
NZ_CP048379.1\|WP_008805596.1\|4041467_4042532_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	4.03307e-122
NZ_CP048379.1\|WP_012968714.1\|4033874_4034684_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	2.78916e-72
NZ_CP048379.1\|WP_061155374.1\|4027867_4028476_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	7.22584e-138
NZ_CP048379.1\|WP_012968721.1\|4043547_4045050_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP048379.1\|WP_008805598.1\|4038625_4039825_+\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0
NZ_CP048379.1\|WP_162677854.1\|4028927_4030190_+\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP048379.1\|WP_002893905.1\|4047563_4047968_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.03988e-10
NZ_CP048379.1\|WP_162677856.1\|4048254_4050360_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP048379.1\|WP_162678331.1\|4032802_4033753_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.87739e-94
NZ_CP048379.1\|WP_162677855.1\|4031418_4032657_+\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP048379.1\|WP_100697763.1\|4036178_4037447_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366031	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.	4.04577e-58
NZ_CP048379.1\|WP_061155376.1\|4030186_4031422_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.56554e-33
NZ_CP048379.1\|WP_002893903.1\|4047964_4048162_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP048379.1\|WP_061155386.1\|4047286_4047589_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.03042e-09
NZ_CP048379.1\|WP_074386573.1\|4046359_4047103_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	4.44417e-87
NZ_CP048379.1\|WP_061155384.1\|4045213_4046302_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0

>NZ_CP048379.1|WP_008805598.1|4038625_4039825_+|S-methyl-5-thioribose-kinase
MSQYHTFTAHDAVAYAQQFAGIDNPSELVSAQEVGDGNLNLVFKVFDRQGVSRAIVKQALPYVRCVGESWPLTLDRARLEAQTLVAHYQHSPQHTVKIHHFDPELAVMVMEDLSDHRIWRGELIANVYYPQAARQLGDYLAQVLFHTSDFYLHPHEKKAQVAQFSNPAMCEITEDLFFNDPYQIHERNNYPAELEADVAALRDDAQLKLAVAALKHRFFAHAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNYCGLPGQLGIRDAAAAREQRLNDIHQLWTTFAERFQALAAEKTRDAALAYPGYASAFLKKVWADAVGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLARVRQYS
>NZ_CP048379.1|WP_136072219.1|4037495_4038524_-|S-methyl-5-thioribose-1-phosphate-isomerase
MQTLQTTSLRVSENQLFILDQQALPQEKRWLAADNVALLVDHIHALRVRGAPLIGLSASLLLALLAQRGLNRDELQQALETLRAARPTAVNLMNNLDRMKQALAREDYPQALEAEALRLVEEDKQLCDRIAEAGSALVKPGSRLLTHCNTGGLATAGVGTALGVIALAHRQGKVANVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRYCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLVSGWVLDSGVVTPAQVAAGAFAPDNG
>NZ_CP048379.1|WP_100697763.1|4036178_4037447_+|histidine-phosphatase-family-protein
MMPARHQGLLRLFIACALPLLALQSAAAADWQLEKVVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYVSGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKPCPIFDTPWQVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKITQASQITALLPLLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEATPNVRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRNAKSGERYLRVYFQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRPSAPTITMVLP
>NZ_CP048379.1|WP_100697765.1|4034794_4036153_+|MFS-transporter
MSGIIAFFRASPPKAGAEFDEHRFRRVRWQTFIAMTLAYVTFYVCRLSFTVAKSALVELGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWAQSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLLVLFMHDSPQSSGFPSINVIRDEPQEEAEARGSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVMAGFISLLNTAGFALMLWSPHNYYTDILAMVIFGATIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLGEFLTGIIIDKTAILENGKTLYDFSTLALFWVGTGLGSALLCFTTAAIVARRHAVERQTSFSS
>NZ_CP048379.1|WP_012968714.1|4033874_4034684_+|inositol-monophosphatase
MQSQESEALQARYRLACELAKAGAELAFEYYQQREALTVDYKGDDLQDVVSVADKRVEAFVKQRIQSAFPQDGFLGEESGARLPDARVLWVVDPIDGTSCFLNGLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEGVMGVGTSHRVTPADFLPFLQALLSDGGMFIRNGSGALMSAWAAAGRLIGYYEPHMNPWDALPGLVLMREAGGASNDFLAQEGIQRGNPLLLASQTLYPQLKKMIPQPLH
>NZ_CP048379.1|WP_162678331.1|4032802_4033753_+|LacI-family-DNA-binding-transcriptional-regulator
MARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVNIIARTMITGSSNFIGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLAGCDRVCSDNAQGAKLVAGLFSRRGWQQVGFIGENRENFSTRERYEAFIARTSGMTVSSRFCDGGGYQAGYQAARELVAENPGVQALFCATDMLALGALDGLRDAPAPLPAIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHSAK
>NZ_CP048379.1|WP_162677855.1|4031418_4032657_+|cytosine-deaminase
MKIINARLRRQEALFTLDLQDGMIHRITAQAAMQTADAGDIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALKALLAVKQEAADLIDLQIVAFPQEGIESYPDGRGLMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGALVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA
>NZ_CP048379.1|WP_061155376.1|4030186_4031422_+|PucR-family-transcriptional-regulator
MSLTVSELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGEAYIHAIPATLIALADELGIPLIEQPYLLKMVIVTERIGTALVRSENALQSQRDILMQLVTGDYPDLQMLHQRALHQQLDFTRPLRLAALRLEGLSRLFRQFPPEQAEAWLLQAHRSVRQQLQQQLNQQGNPFPLLERSNMFLFLLPDEEGEGFQQKKWLQQWLQALADGEDSLSLLCGLSAPVRQLQGYPRALSQARQALDLCDTLRPTQRISDYQQLGFIKLLSAVSDPALLNDFMHDTLGCLIEPGRKAPWLLLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALVIWRLSQNHLQDPP
>NZ_CP048379.1|WP_162677854.1|4028927_4030190_+|cytosine-permease
MSNSNDFPLVEAPANGRKGVFSIAMVLFSFTFFTGTMFAGGKLGVSFSIVNLLWIAVIGNALLALYAASLGWIAARTGLNTVLMGRFCFGEIGSKLADFILGFAELGWYAWGTATVAISLVKILALPEALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLMVSMYLALHHAGGWQAMTRIAPSDTMTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQADIVEVLILQGLSVAAVIMLCLNLLTIQGPTIYNVSAAACHLLRSGRRRTLTIAAAGVGIVLAIGGMYEMLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNARLPRFNWLGLGAYAAGAVVAYLSPWIAPLVGITVSALVYIVLTLLSKRQPAAVAEQEP
>NZ_CP048379.1|WP_061155374.1|4027867_4028476_-|methylthioribulose-1-phosphate-dehydratase
MWQERLAQLVTTCHWIGAKGWAPATGGNMSVRQDDTWCWLSESGRDKGSLTTEDFLQVEIATNQAPSGRKPSAETGLHTLVYRLFPEANVVLHVHTVNATVLSRIEKSDTLALQGYEMQKTLSGQLSHLDTVPVAIFDNDQDIDALAARIADYAQTRPLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECELMRRRYEP
>NZ_CP048379.1|WP_008805597.1|4040122_4041364_-|hypothetical-protein
MSALPSPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSVVDVRDPTRPTTVNYIAAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRSVGDTVSDVQDKGWSAGLRIFDISTPAQPREISFLSLNGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMHQAGGETPDWPQGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPTLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPSNPVSIATFPPPDEADYVAKGAHFGPHNLHENRPGSFVSSTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPKTMMDTRPGRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG
>NZ_CP048379.1|WP_008805596.1|4041467_4042532_-|sugar-ABC-transporter-substrate-binding-protein
MKKIALSLMTLGLLQSTAALATAPTPVPAAIAEHSGPIRIAVIRNLGSDDNTTQFVSGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTELSFGQLVKDFNGKANIVKLWVAGFPPMERRQAAYQTLLKQNPGIKELESIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGAYKALKENGRTEIKLYSIDISNQDLQLMREAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPATYDFKAAAIPQALLAAQPGAVNVASLGKIIPGWGQTEDFIAPWFATLEAKNK
>NZ_CP048379.1|WP_061155383.1|4042552_4043551_-|ABC-transporter-permease
MSKALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGDMAEGTIPAAFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
>NZ_CP048379.1|WP_012968721.1|4043547_4045050_-|sugar-ABC-transporter-ATP-binding-protein
MSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYQGEVTINDQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMAFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQQQGIGVVFISHRIHELKAICDTLTVLRDGRLIESGPMAPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQIDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQMLRRLSGGNQQKVAIGKWLRSHANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGLCDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>NZ_CP048379.1|WP_061155384.1|4045213_4046302_+|oxidoreductase
MSNSDIRVVPGPANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIRFTGHCSERDVAELVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVVLAPQPEALPLTVRLGINGALAIRDVLLASSETALADQSRGDLTQAFRDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQAYQRFNLPTTLAALEVDINNRTELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>NZ_CP048379.1|WP_074386573.1|4046359_4047103_+|3-oxoacyl-ACP-reductase-FabG
MQIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIKALGRHGEAVQADSASAQAIQDAVTHAARSLGGLDILVNNAGIARGGPLESMTLADIDALINVNIRGVVIATQEALVHMSDGGRIINIGSCLANRVAMPGIAVYAMTKSALNSLTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQAEAQRQMIAVGHYGQPEDIAAAVTFLASPAAGQISGTGLDVDGGLNA
>NZ_CP048379.1|WP_061155386.1|4047286_4047589_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKQFSKIDNRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTTYLHEEHTEYDYSVHQG
>NZ_CP048379.1|WP_002893905.1|4047563_4047968_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDENDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP048379.1|WP_002893903.1|4047964_4048162_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP048379.1|WP_162677856.1|4048254_4050360_-|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFIAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH

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Crispr_ID: NZ_CP048379_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_4

4057061-4057357

Orphan

Consensus_repeat	Method
CCAGGCCAGACCGTAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGACGGGTACGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP048379_4

>merge|NZ_CP048379|4|4057061-4057357|PILER-CR
CCAGGCCAGACCGTAGGCCCGGTAAGGCGTAGCTGCCACCGGGCATCAGGGCGGGTACGCTGCCTGAGCACCTTGCCAGGCGGCGCTGCGCTTGCACCGGCCTACAATGCCAGCGCCCTCCAGGCCAGACCGTAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGACGGGAACGCGGCCAGAACTCTTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTACAATGCCAGAGTCCCCCAGGCCAGACTGTAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGACGGGTACGC

>NZ_CP048379|4|1|4057061-4057357|PILER-CR
CCAGGCCAGACCGTAGGCCCGGTAAGGCGTAGCTGCCACCGGGCATCAGGGCGGGTACGC	TGCCTGAGCACCTTGCCAGGCGGCGCTGCGCTTGCACCGGCCTACAATGCCAGCGCCCT
CCAGGCCAGACCGTAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGACGGGAACGC	GGCCAGAACTCTTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTACAATGCCAGAGTCCC
CCAGGCCAGACTGTAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGACGGGTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_162677860.1\|4061666_4065548_-\|enterobactin-non-ribosomal-peptide-synthetase-EntF	unknown	unknown	gnl\|CDD\|236668
NZ_CP048379.1\|WP_004178967.1\|4065558_4065762_-\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|225790
NZ_CP048379.1\|WP_061155386.1\|4047286_4047589_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP048379.1\|WP_162677862.1\|4069552_4070182_+\|enterobactin-synthase-subunit-EntD	unknown	unknown	gnl\|CDD\|182334
NZ_CP048379.1\|WP_162677857.1\|4051186_4051942_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
NZ_CP048379.1\|WP_012542488.1\|4055787_4056747_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NZ_CP048379.1\|WP_162677859.1\|4057460_4058702_-\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP048379.1\|WP_002893905.1\|4047563_4047968_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP048379.1\|WP_136027266.1\|4050772_4051186_-\|proofreading-thioesterase-EntH	unknown	unknown	gnl\|CDD\|182337
NZ_CP048379.1\|WP_162677858.1\|4054423_4055599_-\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NZ_CP048379.1\|WP_008805582.1\|4058814_4059822_+\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NZ_CP048379.1\|WP_162677861.1\|4065789_4066998_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NZ_CP048379.1\|WP_049155941.1\|4052806_4054414_-\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP048379.1\|WP_061155393.1\|4059818_4060811_+\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
NZ_CP048379.1\|WP_032729591.1\|4067257_4069486_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NZ_CP048379.1\|WP_162677863.1\|4070216_4071152_-\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
NZ_CP048379.1\|WP_002893903.1\|4047964_4048162_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP048379.1\|WP_162677856.1\|4048254_4050360_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP048379.1\|WP_002893737.1\|4060807_4061602_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NZ_CP048379.1\|WP_074386576.1\|4051941_4052793_-\|isochorismatase	unknown	unknown	gnl\|CDD\|224452

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_162677860.1\|4061666_4065548_-\|enterobactin-non-ribosomal-peptide-synthetase-EntF	gnl\|CDD\|236668	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF.	0
NZ_CP048379.1\|WP_004178967.1\|4065558_4065762_-\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	3.83126e-26
NZ_CP048379.1\|WP_061155386.1\|4047286_4047589_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.03042e-09
NZ_CP048379.1\|WP_162677862.1\|4069552_4070182_+\|enterobactin-synthase-subunit-EntD	gnl\|CDD\|182334	PRK10251, PRK10251, enterobactin synthase subunit EntD.	9.50992e-84
NZ_CP048379.1\|WP_162677857.1\|4051186_4051942_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	1.50671e-169
NZ_CP048379.1\|WP_012542488.1\|4055787_4056747_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NZ_CP048379.1\|WP_162677859.1\|4057460_4058702_-\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP048379.1\|WP_002893905.1\|4047563_4047968_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.03988e-10
NZ_CP048379.1\|WP_136027266.1\|4050772_4051186_-\|proofreading-thioesterase-EntH	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	2.27138e-91
NZ_CP048379.1\|WP_162677858.1\|4054423_4055599_-\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NZ_CP048379.1\|WP_008805582.1\|4058814_4059822_+\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	4.23115e-177
NZ_CP048379.1\|WP_162677861.1\|4065789_4066998_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NZ_CP048379.1\|WP_049155941.1\|4052806_4054414_-\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP048379.1\|WP_061155393.1\|4059818_4060811_+\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
NZ_CP048379.1\|WP_032729591.1\|4067257_4069486_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NZ_CP048379.1\|WP_162677863.1\|4070216_4071152_-\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	6.09191e-126
NZ_CP048379.1\|WP_002893903.1\|4047964_4048162_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP048379.1\|WP_162677856.1\|4048254_4050360_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP048379.1\|WP_002893737.1\|4060807_4061602_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	0
NZ_CP048379.1\|WP_074386576.1\|4051941_4052793_-\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	2.1697e-133

>NZ_CP048379.1|WP_012542488.1|4055787_4056747_+|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MNFFSFCRRGALTGMLLLLGITSAQAADWPRQVTDSYGTHTLPSQPLRIVSTSVTLTGSLLAIDAPVVASGATTPNNRVADSQGFLRQWSEVAKARKLARLYIGEPSAEAVAAQMPDLILVSATGGDSALPLYDQLKTIAPTLVINYDDKSWQTLLTQLGQITGHEQQASARIADFNKQLVSLKEKMKLPPQPVTALVYTAAAHSANIWTPASAQGQMLEQLGFSLATLPGGLPASHSQGKRHDIVQLGGENLAAGLNGQSLFLFAGDQKDADAIYANPLLAHLPAVAGKRVYPLGTETFRLDYYSALLVLQRLSSLFG
>NZ_CP048379.1|WP_162677858.1|4054423_4055599_-|isochorismate-synthase-EntC
METSLAEDVQKHTQTLSPDSFFFMSPYRSFSTSGCFRRFSQPAVGGDALNGEFQQQMAAAFADARAAGIRKPVMVGAIPFDTCQPSELYIPERWEAFSRPEKQRSARYAAPLETMEVVERREIPEQDAFLAMVECAAALTATPEVDKVVLSRLIDITTRDRVDSGALMERLIAQNPASFNFQVPLSDGGVLLGASPELLLRKEGPRFSSLPLAGSARRQPDDVLDRDAGNRLLASGKDRHEHELVTQAMKSVLGPRSSQLSLPASPQLITTPTLWHLATPIEGTALAQENAMSLACLLHPTPALSGFPHQVAKRLIAELEPFDRQLFGGIVGWCDDEGNGEWVVTIRCARLQQRTLRLFAGAGIVPASSPLGEWRETGVKLTTMLNVFGLN
>NZ_CP048379.1|WP_049155941.1|4052806_4054414_-|(2,3-dihydroxybenzoyl)adenylate-synthase
MIAFTRWPEAFAARYRQKGYWQDLPLTNLITRHAENDAVAIIDGERQISYRQFNQLVDNLACSLQRQGLKRGETALVQLGNVAEFYITFFALLRIGVAPVNALFSHQRSELNAYAAQIKPALLIADREHALFADDSFLHAFIAEHPSLRVALLRNDGGERDLATEINRPADNFVANPTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSIRRSNEICGINAETRYLNALPAAHNYAMSSPGSLGVFLAGGRVILAADPSATLCFPLIEQHQINVASLVPPAVSLWLQAIHEWGSNAQLQSLELLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLNDSPERIIHTQGCPMCPDDEVWVADADGNPLPRGEVGRLMTRGPYTFRGYYNSPQHNAEAFDADGFYCSGDLISIDEDGYITVQGREKDQINRGGEKIAAEEIENLLLRHEAVIHAALVSIEDNLLGEKSCAYLVVTSPLRAVAVRRFLREQGVAEFKLPDRVECVAALPLTPVGKVDKKQLRQWLAEGKLG
>NZ_CP048379.1|WP_074386576.1|4051941_4052793_-|isochorismatase
MAIPKLQAYALPEASDIPANKVNWAFEPSRAALLIHDMQEYFLNFWGENSAMMEKVVANIAALRDFCKQNGIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQQVIAALAPDEDDTVLVKWRYSAFHRSPLEEMLKEAGRDQLIITGVYAHIGCMTTATDAFMRDIKPFFVADALADFSREEHLMALKYVAGRSGRVVMTEELLPLPASKAALRALILPLLDESDEPLDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWALLSREVQ
>NZ_CP048379.1|WP_162677857.1|4051186_4051942_-|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MAALDFHGQTVWVTGAGKGIGYATALAFVEAGANVTGFDLAFAGESYPFATETLDVADAGQVRDVCARLLNNIERLDVLVNAAGILRMGATDQLSAEDWQQTFAVNVGGAFNLFQQTMAQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGSGVRCNLVSPGSTDTDMQRTLWVSDDAEQQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASSHASHITLQDIVVDGGSTLGA
>NZ_CP048379.1|WP_136027266.1|4050772_4051186_-|proofreading-thioesterase-EntH
MAWKRELTLAALNASSENTMVAHLGIVYTRLEAGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCVVGTELNATHHRPVSSGKVRGECRPLHLGRQSQSWEIVVYDEKGRRCCTCRLGTAVLG
>NZ_CP048379.1|WP_162677856.1|4048254_4050360_-|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFIAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH
>NZ_CP048379.1|WP_002893903.1|4047964_4048162_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP048379.1|WP_002893905.1|4047563_4047968_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDENDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP048379.1|WP_061155386.1|4047286_4047589_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKQFSKIDNRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTTYLHEEHTEYDYSVHQG
>NZ_CP048379.1|WP_162677859.1|4057460_4058702_-|enterobactin-transporter-EntS
MNRQSWLLNLSLLKTHPAFRAVFIARFISILSLGLLGVAIPVQIQMMTHSTWQVGLSVTLTGASMFVGLMVGGVLADRYERKRLILLARGTCGVGFVGLCLNALLPEPSLAAIYLLGIWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNFGLAAAGTFITTLTLLRLPQLPPPPQPREHPLRSLLAGLTFLCQSPLIGGIALLGGLLTMASAVRVLYPALADGWQMSAGQIGLLYAAIPLGAALGALTSCQLAQTVRPGALMLATTVGSFVAIALFSLMPYWALGALCLALFGWLSAISSLLQYTLIQTQTPENMLGRINGLWTAQNVTGDAIGAALLGGLGAVMTPAASASASGWALALVGVLLVGLLRELRRFQRPEIVNES
>NZ_CP048379.1|WP_008805582.1|4058814_4059822_+|Fe(3+)-siderophore-ABC-transporter-permease
MSFSTTAVRSVAVPGLLLLLALAAALSLTIGAKSLPIGTVFTAFSGTCQSADCTIVLDARLPRTLAGLLAGVALGLAGALMQTLTRNPLADPGLLGVNSGASFAIVLGAALFGITSPQEQLLLAFCGALCASLLVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLSNGIALLNPDVYDQLRFWQAGSLDIRTLQTLKIVLLPVVMAGIAALLLSRALNSLSLGNDTATALGSRVARTQLIGLIVITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADVIGRLLVPGELRVSVVSAFLGAPVLIWLVRRQPRGGGL
>NZ_CP048379.1|WP_061155393.1|4059818_4060811_+|iron-enterobactin-ABC-transporter-permease
MTAPSRRLIASCLLLMAASLLISLLGLAQGPVPLTIDQVFSALFGDAPRNVAMVVNEWRLPRVLMALLIGAALGVSGAIFQSLTRNPLGSPDVMGFNTGAWSGVLVAMVLFGQNLTAIALAAMAGGVLTSLVVWLLAWRNGIETFRLIIIGIGVRAMLVAFNTWLLLRASLETALSAGLWNAGSLNGLTWGKTWPSAPLILLMLVGSALLVRRMRLLEMGDDTACALGVQVERSRLLLMLVAVVLTAASTALAGPISFIALVAPHIARRLSGTARWGLTQSALCGALLLALADYGAQRLFMPWQLPVGVLTVSLGGIYLIALLIQESRKK
>NZ_CP048379.1|WP_002893737.1|4060807_4061602_+|iron-enterobactin-ABC-transporter-ATP-binding-protein
MSAVPSRLRGEQLTLAYGNKTIAESLNVTIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWLDGAQIQQYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVNKAMRATGISDLALQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYATHLIALRDGRIVAEGAPKEIVTADLIERIYGLRCTIIEDPVAHTPLVVPLGRR
>NZ_CP048379.1|WP_162677860.1|4061666_4065548_-|enterobactin-non-ribosomal-peptide-synthetase-EntF
MTTRLPLVAAQPGIWMAERLSTLPGAWSVAHYVELRGALDPALLGKAIVAGLQQADTLSLRFEEEEGEVWQWVAADRTFGEPSIIDLRTAPDPHRAATERMQADLAQDLRVDGGNPLVCHQLLRVGDDRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAWQRGEATPESPFTPFAEVVDEYQRYAGSEAWQRDKAFWQAQRQALPAPASLSAAPLGGRAAGSDIWRMKLEMNADAFRRLAGHAPQCQPADLALALTTLWLGRLCNRMDYAAGFIFMRRMGSAALTSTGPVLNVLPLAVHIDAQETLADLAMRLAAQLKKMRRHQRYDAEQIVRDSGKVAGDEPLFGPVLNVKVFDYQLDIDGVQALTHTLATGPVNDLELALFPDETGGLSLEILANKARYDEAELRRHVARLTALLAQFAADPALRCGEAEMLSADELARLAAVNDTAVPLPATTLSALVADQARKTPDAPALADAHWQFSYREMRQQVVALAQLLRQRGVKPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDARPSLLITSEDQLARFSDIPGLESLCYQQPLAAGDDVSLALSTPEHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQDRYPLSADDVVAQKTPCSFDVSVWEFWWPFIAGAQLVMAEPEAHRDPQAMQQFFAHYGVTTTHFVPSMLAAFVASLDADSVAACRTLRRVFCSGEALPTELCREWERLTGAPLHNLYGPTEAAVDVSWYPACGTLLAAVTGSSVPIGWPVWNTGLRILDAAMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLTNGAVEYLGRSDDQLKIRGQRIELGEIDRVMSALPDVAQAVSHACVFNQAAATGGDARQLVGYLVSDSGLPLDTAALKARLAEQLPPHMVPVVLMQLADLPLSANGKLDRKALPLPTLGGERSGRPPEPGMETLVAAAFSQLLGCEVNDIDADFFALGGHSLLAMRLAAQLSRQLARQVTPGQVMVASTVGKLSALLAADLSDEQARRLGLDTLLPLRESDGPTLFCFHPASGFAWQFSVLARYLSPRWSITGIQSPRPQGPMASAASLDEVCEHHLRTLLAQQPHGPYYLFGYSLGGTLAQGIAARLRQRGEAVAFLGLLDTWPPETQNWAEKEANGLDPEVLAEIDREREAFLAAQQGQASGELFSAIEGNYADAVRLLTTAHSAKFDGKATLFVAEKTRQAGMDPQVVWGPWVGELEVFSQNCAHVDIISPQAFEAIGPVVREILG
>NZ_CP048379.1|WP_004178967.1|4065558_4065762_-|MbtH-family-NRPS-accessory-protein
MQFSNPFDNPQGQFYILRNDQQQYSLWPAHCDLPAGWAVVCPPQSAEACNAWLAANWSTLTPAHHAS
>NZ_CP048379.1|WP_162677861.1|4065789_4066998_-|enterochelin-esterase
MLRTGSEEWWQTLQGPQCRAVDGAIEVTFWWRDPAGDETHSPRRRVWLYITGVTDHHQNARPQSLTRLPGTDAWSWRTTLSPTWRGSYCFIPSDRDDDFSPEVFSADAPDRALLREGWRKLLPRAIADPLNPHSWQGGRGHGVSALEMPQAPAQPGWDPFNEAHPPARCLEWRSARLGNHRRVWIYTTGEAVDPQTRPLAILLDGQFWAESMPVWSPLAALTREGRLPPAVYLLIDAIDNQRRGVELPCHRDFWLAVQEELLPLVRSHAPFSDRPERTVVAGQSFGGLAAMFAALNWPQRFGCVLSQSGSYWWPHRDGRGTGFIGECLRLGEVSPAGLRIWLEAGQREPIIFRANQALLAQLTTTQQTIFWRQVDGGHDALCWRGGLTAGLIQLWQPLLSHP
>NZ_CP048379.1|WP_032729591.1|4067257_4069486_+|TonB-dependent-siderophore-receptor
MNNRIKSLALLVNLGIYGVAFPLSAAETATDDKNSAAEETMVVTAAEQNLQAPGVSTITADEIRKRPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSRNSVRLGWRGERDTRGDTSWVPPEMIERIEVIRGPAAARYGNGAAGGVVNIITKKTGDEWHGSWNTYMNAPEHKDEGSTKRTNFSLSGPLGGDFSFRLFGNLDKTQADAWDINQGHQSERTGIYADTLPAGREGVQNKNIDGLVRWEFAPMQSLEFEAGYSRQGNLYAGDTQNTNTNDLVKENYGKETNRLYRNTYSVTWNGAWDNGVTTSNWAQYERTRNSRKGEGLAGGTEGIFNSNQFSDIDLSDVMLHSEVSIPFDYLVNQNLTLGSEWNQQRMKDNASNTQALSGGSIPGYDSTGRSPYSQAEIFSLFAENNMELTDTTMLTPALRFDHHSIVGNNWSPSLNLSQGLWDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYASKSGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYAPVYTNGSGTDLYQWENVPKAVVEGLEGTLNVPVSETVNWTNNITYMLQSKNKETGDRLSIIPEYTLNSTLSWQVRDDVSLQSTFTWYGKQEPKKYNYKGQPVTGSEKNEVSPYSILGLSATWDVTKYVSLTGGVDNVFDKRHWRAGNAQTTGGTTGYMYGAGAETYNESGRTWYMSVNTHF
>NZ_CP048379.1|WP_162677862.1|4069552_4070182_+|enterobactin-synthase-subunit-EntD
MRIHHATLPLAGYTLQQIDFDPATFQPEDLFWLPYHASLSGWGRKRQAEHLAGRIAAVYALREVGEKQPPAIGDHRQPLWPTPWFGSISHCAQRALAVIADRPVGVDIERRFTPQLAAELESSIISPAEKTALLHSGLPFPLALTLAFSAKESGFKATPAANQCALGFADFQIVDITASTLALEFSEQRYLLHWIASEDQVITLCALQQ
>NZ_CP048379.1|WP_162677863.1|4070216_4071152_-|transketolase-family-protein
MSNTEHLANVMVEAFIAAVENGVDLVPVVADSTSTAKISPFIKQFPGRLVNVGIAEQSMVGTAAGLALGGKVAVTCNAAPFLISRANEQIKVDVCYNNTNVKLFGLNAGASYGPLASTHHAIDDLAVMRGFGNIQIFAPSTPRECRQIIDYALAYQGPVYIRLDGKALPELLDESYRFVPGAVLTLREGEDVALVATGSTVHEVVEAAQQLADLGIQAKVVSVPSIRPCDTAALLAALRPCGSVITIEEHNVNGGLGSLVAEVLAEAGVGIALQRLGIPDGEYAAAADRGWMRQYHGFDAAAIVALVQKRD

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Crispr_ID: NZ_CP048379_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_5

4117135-4117278

Orphan

Consensus_repeat	Method
CCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGCCCGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048379_5

>merge|NZ_CP048379|5|4117135-4117278|CRISPRCasFinder
CCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGCCCGGCAGACGCTGTTGCTCCGGCAGATAAGGCCAAACGCAACGTGAACGGAAAATTCCCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGTCCGGCAG

>NZ_CP048379|5|4|4117135-4117278|CRISPRCasFinder
CCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGCCCGGCAG	ACGCTGTTGCTCCGGCAGATAAGGCCAAACGCAACGTGAACGGAAAATTC
CCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGTCCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_061155424.1\|4116316_4117036_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226222
NZ_CP048379.1\|WP_162677881.1\|4109251_4110262_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP048379.1\|WP_008805539.1\|4124759_4125008_+\|DUF1158-domain-containing-protein	unknown	unknown	gnl\|CDD\|369016
NZ_CP048379.1\|WP_136072241.1\|4106873_4107782_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP048379.1\|WP_162677884.1\|4121534_4124258_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NZ_CP048379.1\|WP_162677880.1\|4107885_4109154_-\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|237250
NZ_CP048379.1\|WP_046620583.1\|4124250_4124334_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048379.1\|WP_008805544.1\|4115153_4116269_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|237407
NZ_CP048379.1\|WP_002893035.1\|4125024_4125366_-\|RamA-family-antibiotic-efflux-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182314
NZ_CP048379.1\|WP_162677882.1\|4110251_4111289_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
NZ_CP048379.1\|WP_162677885.1\|4127272_4127641_+\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182333
NZ_CP048379.1\|WP_061155422.1\|4111292_4112186_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP048379.1\|WP_162493283.1\|4125396_4126512_-\|RomA-family-MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841
NZ_CP048379.1\|WP_004178896.1\|4127760_4128414_+\|oxygen-insensitive-NAD(P)H-nitroreductase	unknown	unknown	gnl\|CDD\|182929
NZ_CP048379.1\|WP_162677879.1\|4105415_4106750_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP048379.1\|WP_061155426.1\|4120401_4121481_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP048379.1\|WP_136027531.1\|4112188_4113142_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP048379.1\|WP_162677883.1\|4113160_4114828_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173860
NZ_CP048379.1\|WP_061155425.1\|4117295_4120388_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP048379.1\|WP_136072190.1\|4126691_4127276_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_061155424.1\|4116316_4117036_+\|hypothetical-protein	gnl\|CDD\|226222	COG3698, COG3698, Predicted periplasmic protein [Function unknown].	1.04766e-89
NZ_CP048379.1\|WP_162677881.1\|4109251_4110262_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.20533e-157
NZ_CP048379.1\|WP_008805539.1\|4124759_4125008_+\|DUF1158-domain-containing-protein	gnl\|CDD\|369016	pfam06643, DUF1158, Protein of unknown function (DUF1158). This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown.	4.94982e-34
NZ_CP048379.1\|WP_136072241.1\|4106873_4107782_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.79389e-11
NZ_CP048379.1\|WP_162677884.1\|4121534_4124258_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP048379.1\|WP_162677880.1\|4107885_4109154_-\|Zn-dependent-hydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP048379.1\|WP_008805544.1\|4115153_4116269_+\|glutamate--cysteine-ligase	gnl\|CDD\|237407	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional.	0
NZ_CP048379.1\|WP_002893035.1\|4125024_4125366_-\|RamA-family-antibiotic-efflux-transcriptional-regulator	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	4.96021e-38
NZ_CP048379.1\|WP_162677882.1\|4110251_4111289_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	2.12342e-126
NZ_CP048379.1\|WP_162677885.1\|4127272_4127641_+\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|182333	PRK10250, PRK10250, MmcQ/YjbR family DNA-binding protein.	5.89227e-85
NZ_CP048379.1\|WP_061155422.1\|4111292_4112186_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.44981e-79
NZ_CP048379.1\|WP_162493283.1\|4125396_4126512_-\|RomA-family-MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.18735e-55
NZ_CP048379.1\|WP_004178896.1\|4127760_4128414_+\|oxygen-insensitive-NAD(P)H-nitroreductase	gnl\|CDD\|182929	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase.	4.26248e-148
NZ_CP048379.1\|WP_162677879.1\|4105415_4106750_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	8.13152e-95
NZ_CP048379.1\|WP_061155426.1\|4120401_4121481_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.10789e-66
NZ_CP048379.1\|WP_136027531.1\|4112188_4113142_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.44668e-105
NZ_CP048379.1\|WP_162677883.1\|4113160_4114828_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173860	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP048379.1\|WP_061155425.1\|4117295_4120388_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP048379.1\|WP_136072190.1\|4126691_4127276_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.38439e-13

>NZ_CP048379.1|WP_061155424.1|4116316_4117036_+|hypothetical-protein
MLLRCLLPLALLPLAAVASAACTLTDPTLTLQSYRVDAQKERIAMYWQDRHGKAWGSLRSLLAGIDGDGRVQMAMNGGIYDKAYAPLGLYIEDGKRLTPVNRSAGGGNFFIRPGGVFLVANNRAKIVPLPAYKPSPAIRYAVQSGPMLIENGAINWRLKPSASSRKLRNGVGIDKQGRVVFMLSERETNFYDFACYAQSKLGIRQMLYLDGTLSKMYRKGASVPWQYHPFVTMITVERK
>NZ_CP048379.1|WP_008805544.1|4115153_4116269_+|glutamate--cysteine-ligase
MPLADFHRSDPFTLGIELELQVVNPPGYDLSQDASTLIADVQHQLTVGEAKHDITESMLEIATGVCRDISHAQTQLSAIQQAVQRAALRHHLQICGGGSHPFHAWQRQQISDNPRYVKTVEHFGYLAQQATVFGQHVHVGCQSGDDALYLLHGLSRFVPHFIALNAASPWFDSTDSRFACSRLNRFSSYPDNGPMPWVADWQGFRRLFRQLSYTSMIDSMKDLHWDIRPSPQFGTVEVRVMDTPLTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLLYPFNRYQACRYGLDGTLTDVRSGEQRSIRQEILQLADRLAPFAHQLKATAALEAVVRQAKSPHSEAQQMRDFIANGGSLSGLVQKHCEIWAA
>NZ_CP048379.1|WP_162677883.1|4113160_4114828_-|ABC-transporter-substrate-binding-protein
MHKKTLFSRAGRLAVAVSGALALAGAALPANASTLRIAMTAADIPLTLGQPDQGYEGNRFTGIPLYDALVEWDLSQGEKPSGLVPGLATEWHIDPQNTSRWIFTLRPGVRFHDGTEVNADAIVWNVYKVLNKAAPQYAPGQIGNTLSRMPTLTGAEKIDDHTVALTTSEPDALLPYNITNLFIVSPTAWQKQYDAVPASAGDSAARSKQAWTAFAAHAVGSGPFKLEKLVPRQQLILDKNPDYWNKDRIPRVDKVVLIPLPEANARTAALLSKQVDWIEAPAPDAIDQIKSQGFHLYANTQPHLWPWQFSFEKGSPWQDIRVRKAANLCLNRAELKSYLGGYMTEATGVYEADSPWHGKPTFQIKYDPDTARQLMTEAGYSASKPLHVTVATSASGSGQMQPLPMNEYIQQSLKSCFFNVDIKVVEWNTLFTNWRLGARDPSAKGIDAINVSAAVNDPYFGLIRFSTAKAFPPVATNWGYFSTPETEKLAAAVKHAFTPAEMNKAAGELHAALVDQVPFLFVAHDVGPRAISPAVTGVVQPQSWFIDLSLVSKKE
>NZ_CP048379.1|WP_136027531.1|4112188_4113142_-|ABC-transporter-permease
MINTLLYRILLAIPTMLGVAVICFMLVQIAPGDPLVSVMPPDASEALRQTLMQAYGFDKPLPLQFIHWLWRALHGDLGMSVATGRPVIDEVMTAVAYSLRLALLATAIGFVLGSLFGFVAGYFRNSVIDRLASVLSVFGVSVPHYWLGMLLVILCSVKFALLPATGGGPIGEVGWHWDWAHLQFMLLPAITLSVIPTGIIARTVRSQVADILSQEFIVGLRARGLNESRIFVHVMKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQGTIWVLALFFVLLNLLVDILQTTLDPRIKRS
>NZ_CP048379.1|WP_061155422.1|4111292_4112186_-|ABC-transporter-permease
MVDTATTKAVPDATAHASRQGYWRGVLRRLLRDPGGVVVGVVILLLLALALFGPWLIVKDPYQTSMFLRLKPIGSDGFPLGSDELGRDMLSRLILGTRLSLFMGIVPVVFAFFIGGAIGIIAGYTGGKTNTVIMRTVDVFYAFPSVLLAIALSGALGAGIGNALLSLTLVFVPQVARIAESVTAQVRHMDYIDAARATGASALTIIRVQVLGNVLGPIFVFSTGLISVCMILASGLSFLGLGVRPPEPEWGLMLNTLRTAIYTQPWVAALPGLMIFITSISFNILADRLRAAMAIKE
>NZ_CP048379.1|WP_162677882.1|4110251_4111289_-|ABC-transporter-ATP-binding-protein
MQPFINIDLGGPAQPLLKVNHLLKYFRGGKGREVVQAVDDISFTVMKGETLGVVGESGCGKSTTARLLMQLLTQDSGELIFDGQGVGSSRLPLKAYRRQVQMVFQDSYASLNPRMTMEESIAFGQCVHGVSAREASEYARYLLAHVGLEPARFADRYPHALSGGQRQRVNIARALAMKPRLVILDEAVSALDKSVEAQVLQLLQELKRTLELTYVFISHDLHVVRWLSDRILVMYLGEVVEIGPAEQLFTASAHPYTRALLSSMPSMDPENRTLTSPLSGDPPSPIAPPSGCRFHTRCPHAKAVCAEVKPRLEAVGEGHQSACLMAQPASPWHQSIPLKEVSHVG
>NZ_CP048379.1|WP_162677881.1|4109251_4110262_-|ABC-transporter-ATP-binding-protein
MSDNAFVHVRDLRVVFRRDGQTINAVNGVSFEVQKGEVMALIGESGSGKSVTLRALMRLHPPGSSELSGTLQVGDDEVLTMSASQLRRYRGGRCAMIFQEPLLAFDPVYTVGQQIIEGLRRHEGLSRQAARDRALEALRQVRIPSPERRLDAYPHEMSGGMRQRAMIALALSCNPQLLLADEPTTALDATVQIQILILLREQQKQRGLSIVFVTHDIGAAVEIADRVAVMYAGRIVEEASMSEILRHPRHPYTQVLLGSRPKEGLKKGDALHCIPGAPPDLARLPSGCAFAERCPHRRPVCEQSLPPTESVAERHAVSCHRWRELAIDANAQALAV
>NZ_CP048379.1|WP_162677880.1|4107885_4109154_-|Zn-dependent-hydrolase
MSSDVLFTPATDTTGWRINGDRLWASLMDLAQIGATPKGGCRRLTLTDLDRQGRDKVIGWAREAGMSVTIDKIGNVFMRREGRNPGLPPIVSGSHIDTQPTGGKFDGNYGVLAALEVVRTLNDLQIDTDAPIEVVFWTNEEGSRFVPVMMGSGVFAGVFPLEETWAVTDKEGVSVGEALAQIGYIGEQTPGEHPIGAYFEAHIEQGPILEDEAKTIGIVQGVLGIRWYDCVVTGQASHAGPTPMRLRQDALQVATRIMQEVVAIAGRSEEGRGTVGSMQVWPNSRNVVPGEVTFSIDMRNLSDALVDEMDRQLRAFIAEVERESGLQVALKQVSHYPAAPFDAECQQAIADAAQRLGYPARPIVSGAGHDAVYMSYLAPTGMIFIPCKDGISHNEIEYASPEHVAAGANVLLQVMLQYARPV
>NZ_CP048379.1|WP_136072241.1|4106873_4107782_+|DMT-family-transporter
MDKSVPGPWSGWLHGLLGVIIFSGSLPATRLAVQDMDPFLLTFLRASIAGLLAVALLVGFRQKRPRLAQLVPLIIVSSGVVIGFPLLTALALQHITSAHSIVFIGLLPLMTALFGVLRGGERPRRAFWIFSLLGSLLVVGFALTQSAAASLSGDLLMLAAVIACGLGYAEGAKLTRELGGWQVICWALVIALPLMLPASLLVQPASWHAISASSWAALGYVSLFSMLIGFIFWYKGLAAGGIAAVGQLQLLQPFFGLGLSAALLHETVSPLMLAVTLGVVLCVVGSRKFGRQRVVAGSGSRD
>NZ_CP048379.1|WP_162677879.1|4105415_4106750_-|PLP-dependent-aminotransferase-family-protein
MKARYKAVVDRYAQAIRSGQLPAGTRLPTHRTLAAGERISLATATRVYRELEEMGLVSGETGRGTFVRDLSLPPGHGVDQQVVAADVVDLNFNYPSLPEQGDALREALRQLAMAGDIDSHLRYQPHAGRLAEREIIARHLSCQHFAPDAENVLIVNGAQHGLAVTVMGLLRPGDVVAVDALTYSGFKVLAALYHLELAAIPCRPEGPDLQALHTLCQQRRVRAVYTMPTLHNPLGWVLNTGQRQALADLARQHDLLIIEDAAYARLVSRPPPPVISYAPERTVYVTGFSKNIATGLRVGVVISPPRYRPEIERAIRATTWNTPTLISSLICAWIEDGTVARFETQKRQDARQRQQVAREVLCGLPVVTHPDSYFVWLPLGEESRADRLANTLMERRISVSTAEPFCVSATIPQALRIALGSVPFDSLRPALLSVRDAVEYEQYR
>NZ_CP048379.1|WP_061155425.1|4117295_4120388_-|efflux-RND-transporter-permease-subunit
MLTFFIRRPRFAMVIALLLTFVGAVSLKLIPVEQYPAITPPVVNVSASWPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQNRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALARLPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNGQQQTLTINGLGRLNEAASFGEIILRRGAQGQLVRLADVATIELGARSYSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVAATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALQQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRPAQPAAVWRAFNRLLDGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPEAASLERTEAVMAQARKLLMANPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLDAVMADIQRQLLSLPEATIMTFAPPTLPGLGNASGFDLRILAQAGQSSAELEQVTREILQLANQHPQLSRVFTTWSSNVPQLSLTVDRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQWRERAEQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAAMEQILQAHLPPGYDYAWSGISWQEQQTGNQAVWIVLAAVAMAWLFLVAQYESWTLPASVMLSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFARSRREEGLSIVDAAREGATRRFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMIGILFIPSLYVLFQRMREWAHRRG
>NZ_CP048379.1|WP_061155426.1|4120401_4121481_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MIKTFRFALLACGLAGGALTATAAPAVPVRVATVELAPHAEERAIPGRVEAIRAVDIRARTEGVIVQRHFQDGQYVTEGDLLFTLDDAQPRAALALAQAELKSAEASLRQSQQLLTRYERLINNHSISRNDVDTARMQRDVAAAAVQQAKARVEAQQIVLSYTRIAAPVTGRVGHSAFHVGTLINPSSGVLVDIVQLDPVRVSFALDEAAFFSKTGQHADIHALKQAWLAQIDVDGKRRDGVLTSIDNRIDARTGSVAVRAEFANPQHRLLPGGSVTILFRPQELQSRVMIPAAAVQQDPQGFFSWVLKPDQTAGQRRLTLAGQQGQQFAVEKGLQAGEQVITDGAQRLREGAAVQVLN
>NZ_CP048379.1|WP_162677884.1|4121534_4124258_-|cation-transporting-P-type-ATPase
MTKMNNPKFTTPSGDTAPRQVWQQTVDAVLAQTKSQAAGLNSADAAERLNTFGPNALPEKKGKPGWLRFLAHFNDVLIYVLLAAAALTAIMGHWVDTLVILGVTVINALIGHIQESNAEKSLQGIRNMLSSDARVQRNGKHETIPTRDLVPGDIVILRAGDRVPADMRLIETHNLRVEEAILTGESTVVDKITDALEGELPLGDRVNMVFSGTTISAGGGVGVVTATGTQTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFVIILAMMVALFIFSLALRDIPMGELLLSLISLAVAAVPEGLPAIISIILSLGVQTMARKRAIIRKLPTVETLGAMTVVCSDKTGTLTMNEMTVKAIITADCCYRVEGDSYEPQGRIFLEGSDEPVQVQPGTVLETWLRTIDLCNDSQLIQDERGLWGITGGPTEGALKVLAAKAQLPAVEARLVAKIPFDSQYKYMSTLQHIDGEARVLITGAPDVIFAMCREQMSRHGAVPFEVQYWEEEMARFARQGLRMVAAACKPASLDATTLNHEDLQEGLIFLGIAGMMDPPRPEAIDAIHACQTAGIRVKMITGDHPQTAMSIGQMLGITNSSQAMTGYQLEHMDDAALAKAAVEYDIFARTSPEHKLRLVKALQDNGEVVGMTGDGVNDAPALRQADVGIAMGIKGTEVTKEAADMVLTDDNFATIASSVKEGRRVYDNLKKTILFIMPTNLAQGLLIIIALLAGNIIPLTPVLILWMNMATSATLSFGLAFEAAERNVMNRPPRKTGQHVMDGFAVWRVAFVGSMIAIAAFILEAWLAPRGHSPEFIRTVLLQMLVTAQWVYMINCRSSDSFSLSMGLLRNKGIWLVTGVLLLMQLVIIYVPLMQSMFGTEALPLRYWFITLVIGVAMFLVVEVEKRLTRRFRKTA
>NZ_CP048379.1|WP_046620583.1|4124250_4124334_+|hypothetical-protein
MVKLHFPYKFRESESLKSFLANEVKRG
>NZ_CP048379.1|WP_008805539.1|4124759_4125008_+|DUF1158-domain-containing-protein
MKHPLETLLSAAGILLLALLSCLLLPAPSLGLTLAQKLVETFHMMDLNQLYTVLFCLWFLALGTLEFLVLRWVWRRWFSLER
>NZ_CP048379.1|WP_002893035.1|4125024_4125366_-|RamA-family-antibiotic-efflux-transcriptional-regulator
MTISAQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRDTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYRKENHSRAH
>NZ_CP048379.1|WP_162493283.1|4125396_4126512_-|RomA-family-MBL-fold-metallo-hydrolase
MSGQDMNRVTFSVVAIMLLAAATTLPFVLNAGFGKAPQGAQLSQVEASPHYRDGQFHNQLPTPGFTGQKNMLAAWWDFLMTKRENARPAQPLPLVKTDLATLPLGQDVMVWLGHSSWYLQLAGKRILIDPVFSDYAAPFSFINKAFPGDYPWRAEGMPDIDLLIISHDHYDHLDYATIRALLPKIKRVITPLGVGSHLRYWGMDGALITEADWQQAIPVSDEFTVHVLPARHFSGRGLKRNQTLWASFLFVTPQQKIYYSGDSGYGPHFKAIGDEFGPVDLAIMENGQYDQDWKYIHMMPDETAQAADDLRARAVLPGHAGRFVLAKHSWDEPYQRLAAASEGRAWRLLTPMQGEPLWVADKTQSFNAWWR
>NZ_CP048379.1|WP_136072190.1|4126691_4127276_+|TetR/AcrR-family-transcriptional-regulator
MARPKSEDKKQALLEAATAAFAQSGIAASTSAIARSAGVAEGTLFRYFATKDELLNELYLAIKLRLVRMMIAGLDPDEKRPKENARNIWNSYIDWGVRNPMEHKAIRRMALSERITDETRRQVKESFPELNEMCQQSVKEIFLSEAYRAFGDALFLSLAETTIEFAGHDPQRAREIIALGFEAMWNALHEVDAK
>NZ_CP048379.1|WP_162677885.1|4127272_4127641_+|MmcQ/YjbR-family-DNA-binding-protein
MTPEMLHPCAHRIALTYPFTEHCWPFGPEYDVFKVDGRIFMITMTIRGRALVNLKAEPQKSLLNQEIYRSIEPGYHMNKKHWITVVQGEDISEDLLAELIDDSWHQVVNKLSKKAQQRLRPR
>NZ_CP048379.1|WP_004178896.1|4127760_4128414_+|oxygen-insensitive-NAD(P)H-nitroreductase
MDIVSVALKRYSTKAFDATKKLTAGEAEQLKTLLQYSPSSTNSQPWHFIVASTDEGKARVAKAASGTYVFNERKILDASHVVVFCAKTAMDDAWLQRVVDQEEADGRFATPDAKAANHKGRTFFADMHRKELKDDDQWMAKQVYLNVGNFLLGVAAMGLDAVPIEGVDFAILDEEFDLKAQGYTSLVVVPVGHHSVEDFNATLPKSRLPQSTTITEI

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Crispr_ID: NZ_CP048379_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_6

4547475-4547610

Orphan

Consensus_repeat	Method
TTTCCCGGATGCGGCGCATTGCGCCTTATCCGGGCTACCAAATCGCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048379_6

>merge|NZ_CP048379|6|4547475-4547610|CRISPRCasFinder
TTTCCCGGATGCGGCGCATTGCGCCTTATCCGGGCTACCAAATCGCACAACGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGGAGTTTCCCGGAGGCGGCGCATTGCGCCTTATCCGGGCTACCAAATCGCACA

>NZ_CP048379|6|5|4547475-4547610|CRISPRCasFinder
TTTCCCGGATGCGGCGCATTGCGCCTTATCCGGGCTACCAAATCGCACA	ACGCTGTAGCCCCGGTAAGCGCTAGCGCCACCGGGGAG
TTTCCCGGAGGCGGCGCATTGCGCCTTATCCGGGCTACCAAATCGCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_004219434.1\|4561490_4561628_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048379.1\|WP_061155713.1\|4550540_4551338_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	unknown	unknown	gnl\|CDD\|182561
NZ_CP048379.1\|WP_136027195.1\|4542593_4543394_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	unknown	unknown	gnl\|CDD\|179575
NZ_CP048379.1\|WP_136027197.1\|4547668_4549651_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	unknown	unknown	gnl\|CDD\|236720
NZ_CP048379.1\|WP_002889277.1\|4543430_4544054_+\|TRIC-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|182564
NZ_CP048379.1\|WP_015368181.1\|4544139_4544484_-\|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl\|CDD\|184186
NZ_CP048379.1\|WP_061155708.1\|4540304_4541819_-\|dGTPase	unknown	unknown	gnl\|CDD\|235320
NZ_CP048379.1\|WP_002889292.1\|4536906_4537293_+\|DUF3461-family-protein	unknown	unknown	gnl\|CDD\|184234
NZ_CP048379.1\|WP_002889289.1\|4537410_4538568_-\|CdaR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183155
NZ_CP048379.1\|WP_061156415.1\|4556965_4557340_+\|type-II-secretion-system-pilot-lipoprotein-GspS	unknown	unknown	gnl\|CDD\|273390
NZ_CP048379.1\|WP_008807361.1\|4541902_4542601_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP048379.1\|WP_136027198.1\|4549647_4550541_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	unknown	unknown	gnl\|CDD\|236719
NZ_CP048379.1\|WP_100681588.1\|4557379_4557937_-\|type-II-secretion-system-assembly-factor-GspB	unknown	unknown	gnl\|CDD\|339769
NZ_CP048379.1\|WP_162677986.1\|4557997_4561306_-\|pullulanase-type-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|273974
NZ_CP048379.1\|WP_008807359.1\|4538736_4540170_-\|serine-endoprotease-DegP	unknown	unknown	gnl\|CDD\|236802
NZ_CP048379.1\|WP_061155714.1\|4551383_4553591_-\|ferrichrome-porin-FhuA	unknown	unknown	gnl\|CDD\|236643
NZ_CP048379.1\|WP_061155718.1\|4561612_4562455_+\|type-II-secretion-system-protein-GspC	unknown	unknown	gnl\|CDD\|273770
NZ_CP048379.1\|WP_162677985.1\|4544565_4546077_-\|H(+)/Cl(-)-exchange-transporter-ClcA	unknown	unknown	gnl\|CDD\|235385
NZ_CP048379.1\|WP_061155710.1\|4546164_4547445_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP048379.1\|WP_136071818.1\|4553825_4556378_-\|bifunctional-glycosyl-transferase/transpeptidase	unknown	unknown	gnl\|CDD\|236544

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_061155713.1\|4550540_4551338_-\|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC	gnl\|CDD\|182561	PRK10575, PRK10575, Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC.	0
NZ_CP048379.1\|WP_136027195.1\|4542593_4543394_+\|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF	gnl\|CDD\|179575	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional.	6.49846e-163
NZ_CP048379.1\|WP_136027197.1\|4547668_4549651_-\|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB	gnl\|CDD\|236720	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB.	0
NZ_CP048379.1\|WP_002889277.1\|4543430_4544054_+\|TRIC-cation-channel-family-protein	gnl\|CDD\|182564	PRK10578, PRK10578, hypothetical protein; Provisional.	7.76915e-131
NZ_CP048379.1\|WP_015368181.1\|4544139_4544484_-\|iron-sulfur-cluster-insertion-protein-ErpA	gnl\|CDD\|184186	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional.	1.42921e-81
NZ_CP048379.1\|WP_061155708.1\|4540304_4541819_-\|dGTPase	gnl\|CDD\|235320	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional.	0
NZ_CP048379.1\|WP_002889292.1\|4536906_4537293_+\|DUF3461-family-protein	gnl\|CDD\|184234	PRK13677, PRK13677, DUF3461 family protein.	9.99977e-81
NZ_CP048379.1\|WP_002889289.1\|4537410_4538568_-\|CdaR-family-transcriptional-regulator	gnl\|CDD\|183155	PRK11477, PRK11477, CdaR family transcriptional regulator.	0
NZ_CP048379.1\|WP_061156415.1\|4556965_4557340_+\|type-II-secretion-system-pilot-lipoprotein-GspS	gnl\|CDD\|273390	TIGR01004, Pullulanase_secretion_protein_PulS, lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. [Transport and binding proteins, Amino acids, peptides and amines].	3.04103e-54
NZ_CP048379.1\|WP_008807361.1\|4541902_4542601_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	8.21307e-139
NZ_CP048379.1\|WP_136027198.1\|4549647_4550541_-\|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD	gnl\|CDD\|236719	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD.	0
NZ_CP048379.1\|WP_100681588.1\|4557379_4557937_-\|type-II-secretion-system-assembly-factor-GspB	gnl\|CDD\|339769	pfam16537, T2SSB, Type II secretion system protein B. This is the B protein from some operons of bacterial secretion systems of type II. The exact function of the B protein is not known, though in the case of Vibrio cholerae there is a fusion protein between proteins A and B that includes an AAA domain, a PG_binding domains well as this domain at the C-terminus. Many of the other species have no A or B domain genes in this operon. The type II secretion pathway is conserved in Gram-negative bacteria that are prevalent in bacterial pathogens of plants (Pseudomonas fluorescens, Erwinia or Xanthomonas species), animals (Aeromonas hydrophila) and humans (Klebsiella oxytoca, Pseudomonas aeruginosa, Vibrio cholerae or Legionella pneumophila). Typical type II secretion systems (T2SSs) are encoded by a set of 12 to 16 gsp (general secretion pathway) genes organized into large operons including the conserved 'core' genes denoted C to O and in some bacterial species, as indicated above, extra gsp genes such as gspAB, gspN or gspS. A different nomenclature is used for Pseudomonas T2SSs, so the B gene is referred to as the P protein.	2.00697e-21
NZ_CP048379.1\|WP_162677986.1\|4557997_4561306_-\|pullulanase-type-alpha-1,6-glucosidase	gnl\|CDD\|273974	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP048379.1\|WP_008807359.1\|4538736_4540170_-\|serine-endoprotease-DegP	gnl\|CDD\|236802	PRK10942, PRK10942, serine endoprotease DegP.	0
NZ_CP048379.1\|WP_061155714.1\|4551383_4553591_-\|ferrichrome-porin-FhuA	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_CP048379.1\|WP_061155718.1\|4561612_4562455_+\|type-II-secretion-system-protein-GspC	gnl\|CDD\|273770	TIGR01713, Type_II_secretion_system_protein_C, type II secretion system protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	6.55384e-80
NZ_CP048379.1\|WP_162677985.1\|4544565_4546077_-\|H(+)/Cl(-)-exchange-transporter-ClcA	gnl\|CDD\|235385	PRK05277, PRK05277, H(+)/Cl(-) exchange transporter ClcA.	0
NZ_CP048379.1\|WP_061155710.1\|4546164_4547445_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP048379.1\|WP_136071818.1\|4553825_4556378_-\|bifunctional-glycosyl-transferase/transpeptidase	gnl\|CDD\|236544	PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase; Reviewed.	0

>NZ_CP048379.1|WP_061155710.1|4546164_4547445_+|glutamate-1-semialdehyde-2,1-aminomutase
MSKSENLYHAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAASRGLSFGAPTEMEVKMAALVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQDIACIIVEPVAGNMNCIPPQPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQAYYGVEPDLTCLGKIIGGGMPVGAFGGRREVMDALAPTGPVYQAGTLSGNPIAMAAGFACLSEVAQPGVHETLTDLTNQLADGLLNAARETGIPLVVNNVGGMFGIFFTDAETVTCYQDVVKCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSVAHSEEDINNTIDAARRVFAKL
>NZ_CP048379.1|WP_162677985.1|4544565_4546077_-|H(+)/Cl(-)-exchange-transporter-ClcA
MCRKGIFLTTQRAGAAKMPLSSFVLPIIDNGMKADTPSFEAHQFVRVRRGDAVRRLIQRDKTPLAVLFMAAVVGTLAGLVGVAFEKSVNWVQNQRIGALAQVADHWYLVWPLAFILSALLAMVGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPMVQLGGNIGRMVLDIFRMRSAEARHTLLATGAASGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEAAIIEVGKLSNAPVNTLWLYLVLGMLFGCFGPLFNFLVLRTQDLFQRIHGGNIKKWVLMGGVIGGICGLLGLMQPSTVGGGFNLIPIAAAGNFSVGLLLFIFVARVVTTLICFSSGAPGGIFAPMLALGTLLGTAFGMAAIPLFPAYHLDAGTFAIAGMGALLAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILQRTLAKQEAEQAAKAQQPPRENT
>NZ_CP048379.1|WP_015368181.1|4544139_4544484_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDDVALPLEFTEAAANKVKHLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQINEGDMTIEKQGVGLVVDPMSLQYLVGGAVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSV
>NZ_CP048379.1|WP_002889277.1|4543430_4544054_+|TRIC-cation-channel-family-protein
MLVYWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALANGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWILPVLDAVGLAVFVGIGVNKAFLAGSGPLVAVCMGVVTGVGGGIIRDVLAREIPMILRTEIYATACIVGGIVHATAHDTFHLPLENSAMMGMVVTLVIRLAAIRWHLKLPTFALDDNGR
>NZ_CP048379.1|WP_136027195.1|4542593_4543394_+|vitamin-B12-ABC-transporter-substrate-binding-protein-BtuF
MAKSLSFALAALLLLAPAWLLAAPRVVTLSPANTELAFAAGITPVGVSSYSDYPPQAKTIEQVASWQGMNLERIVALKPDVVLAWRGGNAERQVNQLQSLGIHVLWVQTSTIEEIIATLRQLAQWSPQPEKAQQAALAMQQEYDALKARYANAPKKRVFLQFGSTPLFTSGPGSIQDQVLRLCGGENIFATSRVPWPQVSREQVLARQPQAIVVTGDASRIAEAQRFWQHQLTISLIALHSDWFERASPRIILAAKQLCAALDQVK
>NZ_CP048379.1|WP_008807361.1|4541902_4542601_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
>NZ_CP048379.1|WP_061155708.1|4540304_4541819_-|dGTPase
MAKIDFRNKINWHRRFRSPPRVETERDILRIFESDRGRIVNSPAIRRLQQKTQVFPLERNAAVRTRLTHSLEVQQVGRYIAKEVLSRLKEQKLLEEYGLEELTGPFESVVEMACLMHDIGNPPFGHFGEAAINDWFRQRLAPGDALGQPLTDDRCEVQALRLHEGETALNALRRKVRQDLCSFEGNAQGIRLVHTLMRMNLTWAQVGCILKYTRPAWWFEATPASHSYLMKKPGYYLAEEEYVARLRKELDLAPYNRFPLTWIMEAADDISYCVADLEDAVEKRIFSAEQLYQHLYDAWGNHEKGSLFSQVVENAWEKSRANYLRQSAEDQFFMYLRVNTLNKLVPYAARRFIDNLPAIFTGDFNHALLEDDSDCSQLLELYKNVAMKQVFSHPDVEQLELQGYRVISGLLDIYQPLLKLSLEDFSELVAQERVRRLPIASRLYQKLSTRHRLAYVEAVNKLVRTAPEFALMEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVE
>NZ_CP048379.1|WP_008807359.1|4538736_4540170_-|serine-endoprotease-DegP
MKKTTLAMSALALSLGLALSPLSASAAETASSATNAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDNSPFCQDGSPFQSSPFCQGGGQGGQPDGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNATTIKVQLSDGRKFDAKVVGKDPRSDIALIQIQDPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTEQMVKYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPGSAAAKAGIKAGDVITTLNGKAISSFAALRAQVGTMPIGSKVELGLLRDGKPVTVTVELQQSNQTQVDSSTIFNGIEGAEMSNKGQDKGVVVNNVKAGTPAAQIGLKKGDIIVGANQQPVKNIADLRKIFDAKPSVLALNIQRGDASIYLLLQ
>NZ_CP048379.1|WP_002889289.1|4537410_4538568_-|CdaR-family-transcriptional-regulator
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEEHTPALNEWAQRLGIDLNQPRVVAMIEVDSGQLGVDSAMAELQQLQNALTTPDRNNLVAIVSLTEMVVLKPALNSFGRWDADDHVRRVEQLIARMKENGQLRFRVALGNFFTGPGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLARLKAMDNNGLLRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQLDEQR
>NZ_CP048379.1|WP_002889292.1|4536906_4537293_+|DUF3461-family-protein
MYDNLKSLGITNPDEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYVIDELDQICQRDRTEIDLKRKILDDLRHLESVVTNKISEIEADLEKLTRK
>NZ_CP048379.1|WP_136027197.1|4547668_4549651_-|Fe(3+)-hydroxamate-ABC-transporter-permease-FhuB
MNARLSPLAILLLTGLLVAAFALSIVNLNVALPYAQWRQALWQPDIDNIAQMLFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGMTVTTLWAIPGVLASQFAALAGACLVGALVFGVSWGKRLSPVTLILAGLVVSLYCGAVNQLMVIFHHDQLQSMFLWSTGTLTQTDWSVVQRLWPQLLGGAMLTLLLLRPLTLMGLDDGVARNLGLALSLARLGVLTLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLLLAALIGALILWLSDQIILWLSRVWREVSTGSVTALIGAPLLLWLLPRLRSISAPVMNGGDKALIERRHVPWFALGGLALLLLAVTAALIFGRDAHSWQWASGDLLAQLMPWRWPRVLSALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFFVPGNAFVWLLPAGSLGAAATLLVILIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQILTWMSGSTYSATPERVLRSGVVMLALLALAPLCRRWLTILPLGGEAARAVGMALTPSRIGLLLLAASLTATATLTIGPLSFVGLMAPHIARMLGFRRTMPHMVISGLTGGMLLVFADWCGRMMMFPYQIPAGLLSTFIGAPYFIYLLRKQSR
>NZ_CP048379.1|WP_136027198.1|4549647_4550541_-|Fe(3+)-hydroxamate-ABC-transporter-substrate-binding-protein-FhuD
MMNPTLITRRRLLTAMALSPLLWQMRGAQAANVDPQRVVALEWLPAELLLALGVTPYGVADIPNYRLWVNEPALPASVIDVGLRTEPNLELLTQMKPSFIVWSAGYGPSPEKLARIAPGRGFTFSDGKRPLAMAQRSLLEMADLLGKQQQAKHHLAEFDALMENLRPRFAGRADRPLLMISLLDARHVLVFGENCLFQEVLDRFGIKNAWRGEAAFWGSITVGIDRLAAFNEADVICFDHGNDREMAQLLATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFARVLADAQGRAAI
>NZ_CP048379.1|WP_061155713.1|4550540_4551338_-|Fe3+-hydroxamate-ABC-transporter-ATP-binding-protein-FhuC
MQEQTPHSETTFALNGVTFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSAGDVLLDGQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIALVGLKPLAQRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRSETLEQIYGIPMGILPHPAGAAPVSFVY
>NZ_CP048379.1|WP_061155714.1|4551383_4553591_-|ferrichrome-porin-FhuA
MARPKTAQPNHSLRKIAVVVATAVSGMSVYAQAAEQPKQEETITVVAAPAAQESAWGPAPTIAAKRSATATKTDTPIEKTPQSVSVVTRQEMEMRQPTTVKEALSYTPSVFSTRGSSTTYDVVTIRGFTTSTTVNTNQYLDGMKLQGNNYSEVSMDPYFLERVEVMRGPTSVLYGNSNPGGIVSMVSKRPTTEPLKEVQFKMGTDNLWQTGFDFSDAIDDAGVWSYRLTGLGRSQDTQQQMAKSTRYAVAPSFSWRPDDKTDFTFLSNFQNDPDAGYYGWLPREGTVVPYYDANGKAHKLPTDFNEGEADNKISRRQKMVGYSFSHQFDDTFTVRQNLRYAEVDTLYRSVYGNGYVAPGYMNRAYVRSDEHLNTFTVDTQLQSAFATGAVSHTLLTGVDYSRMRNDVDADYGTADPISMSNPQYGNPNIQVTFPYAVLNRMEQTGLYAQDQMEWDKWVMTLGGRYDYATTSTLTRSSNSLAENHDQQFTWRGGINYLFDNGISPYFSYSESFEPVSGSGLNGQPFDPSRGKQYEAGVKYVPKDMPVVVTAAVYQLTKDKNLTADPANQAFSIQTGEIRSRGLELEAKAAVNANINVTAAYSYTDAEYTHDTVFNGKRPAEVPRNMASLWADYTFHETALSGLTVGAGARYIGSTVSYYKNDTSTGNKNDAFNVAGYALMDATVKYDLARFGLPGSSVGVNVNNLFDREYVSSCYSEYACYWGAGRQVVATATFRF
>NZ_CP048379.1|WP_136071818.1|4553825_4556378_-|bifunctional-glycosyl-transferase/transpeptidase
MAGDDREPIGRKGRPSRPTKQKVTRRRVREEDYDDEYDDDDYEDEKPVPRKGKGNGSKPRRKRRWLWLLVKLGIVFAVLIAAYGVYLDQKIRSRIDGKVWELPAAVYGRMVNLEPDMQISKNEMVRLLNATQYRQVSAMTRPGEYTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLDTIENMDNNRQFGFFRLDPRLITMLQSPNGEQRLFVKRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASVYNPWRNPKLALERRNLVLRLLQQQQVIDQELYDMLSARPLGVQPRGGVISPQPAFMQMVRQELQAKLGDKMKDLSGVKIFTTFDSVAQDAAEKAASEGIPVLKKQRKLADLETAMVVVDRFTGEVRAMVGGAEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPNQYRLNTWIADAPVTIRLSNGQTWSPQNDDRRFSGQVMLVDALTRSMNVPTVNLGMALGLPAVVDTWTKLGAPKDQLNAVPAMLLGALNLTPIEVAQAFQTIASGGNRATLSALRSVIAEDGTVLYQSYPQAERAVPAQAAYMTLWTMQQVVQRGTGRQLGAKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLALTAPEDVVDMGVDSNGNLVCSGGVRSLPVWTTQPDALCRQGEMMQQQQLQQQEANNPFNQSGQQQPQQQQQQQQPPKQQEKSDGVAGWIKDMFGSN
>NZ_CP048379.1|WP_061156415.1|4556965_4557340_+|type-II-secretion-system-pilot-lipoprotein-GspS
MRIPFIFSLCVVAMLSGCQQKPASTLSPAISSQAQLEQLSSVAAGTRYLKNKCNRSDLPADETIYRAAVNVGKARGWGNIDVATLSQNSDRLYQQLLQDSTPEATQCSQFNRQLAPFIASLRSD
>NZ_CP048379.1|WP_100681588.1|4557379_4557937_-|type-II-secretion-system-assembly-factor-GspB
MIVRDDSERGIPPLVAHQPPSAQADAPVSRGRMVQVPGWIIPLYAGLFIALGWFGGEQWRHPSPPQTLPLPVAHAALLPLTAAGETAPKKPSPAVKPSAPAAPVVDSDTLPPLRYSAHVYASLPEKRSIVLNGKAWSEGDSPLPNLVVEQIQQDVTIFSFNGTTFTLAALDDWPGGKIDEEPKGE
>NZ_CP048379.1|WP_162677986.1|4557997_4561306_-|pullulanase-type-alpha-1,6-glucosidase
MLRYTCHALFLGSLVLLSGCDNSSSSSPSGSPGSPGNPGNPGTPGTPDPQDVVVRLPDVAVPGEAVQASANQAVIHLVDIAGITSSTPADYATKNLYLWNNETCDALSAPVADWNDVSTTPTGSDKYGPYWVIPLTKESGCINVIVRDGTNKLIDSDLRVSFGDFTDRTVSVIAGNSAVYDSRADAFRAAFGVALADAHWVDKTTLLWSGGENKPIVRLYYSHSSKVAADSKGEFTDKYVKLTPTTVSQQVSMRFPHLASYPAFKLPDDVNVDELLQGEAVAISAESDGILSSATQVQTAGVLDDTYAAAAEALSYGAQLTDSGVTFRVWAPTAQQVELEVYSADKKVVASHPMTRDSASGAWSWQGGSDLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVDLNDSALKPEGWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKKLSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEINSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMGYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTSMTDDQARHLADLTRLGMAGNLADFVLIDKDGAVKKGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVMTIDDGMQAGASLDSRVDAIVVAINAAPESRTLQDFAGTSLQLSAIQQAAGDRSLASGVQVAADGSVTLPAWSVAVLELPQGESQGAGLPVSSK
>NZ_CP048379.1|WP_004219434.1|4561490_4561628_+|hypothetical-protein
MIRHAYRHSPAINNSKANNHLPVSVGYYANVQKNKLAKELKCQFL
>NZ_CP048379.1|WP_061155718.1|4561612_4562455_+|type-II-secretion-system-protein-GspC
MPVSVMGLTNINKGIIKLLPQIVTLIILITAIPQLAKLTWRVVFPVSPEDISALPLTASPMAESELKTERPVFTLFGLAAKNSPAPTDATHLNQVPVSSLKLRLTGLLASSNPARSIAIIEKGNQQVSLSSGDTVPGYDARIVAILPDRIIVNYQGRKEAILLFNDTRAPSSSPATAAAPPLVKRLREQPQNILTYLSISPVLSGDKLQGYRLNPGKDASLFRQSGLQENDLAIALNGIDLRDQAQAQQALQHLNEQTEITLTVEREGQRHDIAFALGDE

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Crispr_ID: NZ_CP048379_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_7

4903290-4903558

Orphan

Consensus_repeat	Method
GGTACGGCGCCTGACCGCCCGGCGGCGCTGCGCTTGCGCGGGCCTACGGGGTGTGAGCCTGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP048379_7

>merge|NZ_CP048379|7|4903290-4903558|PILER-CR
GCCCGGCGGCGCTGCGCTTGCCGGGCCTGGGGGGAAGGAGGTTTTCTGTAGGCCGGATAAGGCATTTATGCCGCCATCCGGCACTACCGCGGGTACGGCGCCTGACCGCCCGGCGGCGCTGCGCTTGCGCGGGCCTACGGGGTGTGAGCCTGTGTGAGGGATCGTAGGCCGGATAAGGCATGTATGCCGCCATCCGGCATTACCGCGGGTACGGCGTCTGTCCGCCCGGCGGCGCTGCGCTTGCGCGGGCCTACGGGGTGTGAGCCTGT

>NZ_CP048379|7|2|4903290-4903558|PILER-CR
GCCCGGCGGCGCTGCGCTTGCCGGGCCTGGGGGGAAGGAGGTTTTCTGTAGGCCGGATAAGG	CATTTATGCCGCCATCCGGCACTACCGCGGGTACGGCGCCTGACCGCCCGGCGGCGCTGCGCTTGCGCGG
GCCTACGGGGTGTGAGCCTGTGTGAGGGATCGTAGGCCGGATAAGGCATGTATGCCGCCATC	CGGCATTACCGCGGGTACGGCGTCTGTCCGCCCGGCGGCGCTGCGCTTGCGCGG
GCCTACGGGGTGTGAGCCTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_032736746.1\|4905326_4906646_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
NZ_CP048379.1\|WP_023296979.1\|4903674_4905057_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP048379.1\|WP_162678058.1\|4898824_4899547_+\|DUF1365-domain-containing-protein	unknown	unknown	gnl\|CDD\|377778
NZ_CP048379.1\|WP_162678063.1\|4910494_4911364_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225973
NZ_CP048379.1\|WP_162678059.1\|4899543_4900764_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP048379.1\|WP_162678065.1\|4913328_4913670_-\|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin	unknown	unknown	gnl\|CDD\|368768
NZ_CP048379.1\|WP_060175537.1\|4914235_4914676_-\|antirestriction-protein	unknown	unknown	gnl\|CDD\|377006
NZ_CP048379.1\|WP_162678056.1\|4896847_4897567_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180399
NZ_CP048379.1\|WP_162678061.1\|4901242_4901767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048379.1\|WP_061155921.1\|4895456_4896185_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185003
NZ_CP048379.1\|WP_017880113.1\|4913680_4914223_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP048379.1\|WP_001757896.1\|4911695_4912703_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|226612
NZ_CP048379.1\|WP_162678055.1\|4896416_4896851_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP048379.1\|WP_162678064.1\|4912966_4913308_-\|toxin	unknown	unknown	gnl\|CDD\|369065
NZ_CP048379.1\|WP_004177586.1\|4901763_4902315_+\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
NZ_CP048379.1\|WP_162678062.1\|4908570_4910250_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038
NZ_CP048379.1\|WP_162678057.1\|4897563_4898823_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NZ_CP048379.1\|WP_162678060.1\|4900760_4901246_+\|DUF2878-domain-containing-protein	unknown	unknown	gnl\|CDD\|378555
NZ_CP048379.1\|WP_162678347.1\|4907072_4908512_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP048379.1\|WP_110218939.1\|4902311_4903271_+\|DUF523-and-DUF1722-domain-containing-protein	unknown	unknown	gnl\|CDD\|225811

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_032736746.1\|4905326_4906646_-\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
NZ_CP048379.1\|WP_023296979.1\|4903674_4905057_-\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	4.23911e-87
NZ_CP048379.1\|WP_162678058.1\|4898824_4899547_+\|DUF1365-domain-containing-protein	gnl\|CDD\|377778	pfam07103, DUF1365, Protein of unknown function (DUF1365). This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.	1.069e-100
NZ_CP048379.1\|WP_162678063.1\|4910494_4911364_+\|HNH-endonuclease	gnl\|CDD\|225973	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms].	3.09512e-94
NZ_CP048379.1\|WP_162678059.1\|4899543_4900764_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	2.66925e-113
NZ_CP048379.1\|WP_162678065.1\|4913328_4913670_-\|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin	gnl\|CDD\|368768	pfam06154, CbeA_antitoxin, CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A. CbeA_antitoxin is a family of cognate antitoxins to the CbtA toxins that act by inhibiting the polymerization of cytoskeletal proteins, see pfam06755. These are classified as a type IV toxin-antitoxin system. The family includes three proteins from E. coli YagB, YeeU and YfjZ, which act not by forming a complex with CbtA but through acting as antagonists to the CbtA toxicity, by stabilizing the CbtA target proteins. For example, YeeU binds directly to both MreB and FtsZ and enhances the bundling of their filaments in vitro. YeeU is also able to neutralize the toxicity caused by other MreB and FtsZ inhibitors, such as A22 [S-(3, 4-dichlorobenzyl)isothiourea] for MreB, and SulA and DicB for FtsZ. Thus CbeA, for cytoskeleton bundling-enhancing factor A, is proposed as a general name for all of these antitoxin proteins.	6.1697e-65
NZ_CP048379.1\|WP_060175537.1\|4914235_4914676_-\|antirestriction-protein	gnl\|CDD\|377006	pfam03230, Antirestrict, Antirestriction protein. This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.	3.33751e-46
NZ_CP048379.1\|WP_162678056.1\|4896847_4897567_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180399	PRK06101, PRK06101, SDR family oxidoreductase.	1.53517e-84
NZ_CP048379.1\|WP_061155921.1\|4895456_4896185_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|185003	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA.	3.02091e-64
NZ_CP048379.1\|WP_017880113.1\|4913680_4914223_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	7.3144e-67
NZ_CP048379.1\|WP_001757896.1\|4911695_4912703_-\|restriction-endonuclease	gnl\|CDD\|226612	COG4127, COG4127, Uncharacterized conserved protein [Function unknown].	4.89447e-138
NZ_CP048379.1\|WP_110218939.1\|4902311_4903271_+\|DUF523-and-DUF1722-domain-containing-protein	gnl\|CDD\|225811	COG3272, COG3272, Uncharacterized conserved protein [Function unknown].	4.34515e-75
NZ_CP048379.1\|WP_162678064.1\|4912966_4913308_-\|toxin	gnl\|CDD\|369065	pfam06755, CbtA_toxin, CbtA_toxin of type IV toxin-antitoxin system. CbtA is a family of bacterial and archaeal toxins of type IV toxin-antitoxin system. Toxins from such systems in free-living bacteria inhibit cell growth by targeting essential functions of cellular metabolism. In this case the toxin inhibits cell-division leading to changes in morphology and finally lysis, by interacting with two essential cytoskeletal proteins, FtsZ and MreB. For FtsZ it inhibits its GTPase activity and GTP-dependent polymerization, and for MreB it inhibits its ATP-dependent polymerization. These actions of CbtA appear to occur simultaneously. he cognate antitoxin family is represented by pfam06154.	1.08613e-63
NZ_CP048379.1\|WP_004177586.1\|4901763_4902315_+\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	1.72471e-92
NZ_CP048379.1\|WP_162678062.1\|4908570_4910250_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP048379.1\|WP_162678057.1\|4897563_4898823_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	2.82112e-153
NZ_CP048379.1\|WP_162678060.1\|4900760_4901246_+\|DUF2878-domain-containing-protein	gnl\|CDD\|378555	pfam11086, DUF2878, Protein of unknown function (DUF2878). This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.	5.80853e-17
NZ_CP048379.1\|WP_162678347.1\|4907072_4908512_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	1.65192e-126
NZ_CP048379.1\|WP_162678055.1\|4896416_4896851_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.83728e-19

>NZ_CP048379.1|WP_110218939.1|4902311_4903271_+|DUF523-and-DUF1722-domain-containing-protein
MNTQPVIGISGCLTGSAVRFDGGHKRMGFVMDELAQWVAFKPVCPEMAIGLPVPRPALRLVQTPVGEIRMRFSHAPHEDVTEKMADFASAHLATLGELSGFIVCAKSPSCGMERVRLYDEKGNRGRKEGVGLFTGALIARYPWLPVEEDGRLHDPLLRENFVERVFALHELNALRARGLSRHGLLAFHSRYKLQLLAHHQAGYREIGPFVASLHEWEDLEAFFEVYREKLMAILKQPASRKNHTNVLMHIQGYFRDQLNSRQRGELREVILNYRAGLLPILAPLTLLKHYLAEYPDRYLQAQNYFDPYPQDLALRLTVN
>NZ_CP048379.1|WP_004177586.1|4901763_4902315_+|DUF3833-domain-containing-protein
MKRILTLGLALLMLILAGCSTEVTEYRQQQPALDIFHYFQGRTEAWGMVQDRSGKQLRRFHVEIDGDVVGDTLTLHERFVYDDGEKQQRVWRIRRTGDNRYQGTAGDIEGVASGQAAGNAFHWRYSMNVEASGSRWLLHFDDWMFLQDGSHLFNKTEMKKFGITVATVTLFFTRTTAEERTAP
>NZ_CP048379.1|WP_162678061.1|4901242_4901767_+|hypothetical-protein
MRFALLLLWLTTLAPAAHAADWLTWRRVGEATLTWGPFTVYHSQLRTPNGRYDSPQQDRALIITYQRDIDRDALVDATRDQWQAQGILQQEPRSEAWLRMLQGIWPDVAPGSQLAFVVSGGEGQFWYRASAAQTAFTPLGPRQSAAFSTRFLAIWLDPRTTYPELRQQLIGGTP
>NZ_CP048379.1|WP_162678060.1|4900760_4901246_+|DUF2878-domain-containing-protein
MTRPAQHLLMALAFDVYWTLVVMLRERGLLIWLTLAIFAWLRLPVASRPPALLLAAAGCGLDACWALAGLIDFRGDSLLPLWMVALWLMFAVVWTRLTRATTLPGWVLATAATVGGPVAYLIGARLGAMSLLVPMALAVAAMACGWLVLMLLFHLGMGRRK
>NZ_CP048379.1|WP_162678059.1|4899543_4900764_+|class-I-SAM-dependent-methyltransferase
MTDPVFALEPDVPRNVRLARWLLFRLLSGLREGSLTVREGAQTFHFGDPAAALRAEARVCTPEVYWRLLTGGSLAAAEAWMDGDWESHQLTALLQILARNGEVLGRLERGFRLLGKPVARLRHWTRRNTRAQARENIAAHYDLGNEFYAHFLDDDLLYSSALFTDDQQDLTQAQRAKMARLCDQLALTPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWATERMARAGLQDRVEVLLCDYRDLRGEYDKLVSVEMIEAVGQRYLPAFFLTCQARLRPGGRMALQAITIQDQRYRDYSKSVDFIQRYIFPGGFLPSITAMSELMTRHTDFVVRNLFDMGPDYARTLAHWRQRFTHAWQDIEKLGFDERFRRMWLYYFGYCEAGFNARTISVVQLTAERV
>NZ_CP048379.1|WP_162678058.1|4898824_4899547_+|DUF1365-domain-containing-protein
MNSCLYQGVLRHRRLQPKAHHFVYRLFMAWLDLDELDRLPEAGIRRNRLAAAALYDADYPLGAPLKAQVLNRLESLTGSSPAGRVMLLTQLRYFGFHFNPVNFYYCYDEADILRWVLAEVRNTPWNERHYYAVDGQQARPLEKAFHVSPFNPMDMVYHWRFNAPGKTLHMHIENHQTSKVFDATLALSRLPLTRANLRGLLLRLPLMTLKTVLAIYWQALRLWLKRVPLYNHPVSRSERS
>NZ_CP048379.1|WP_162678057.1|4897563_4898823_+|FAD-dependent-oxidoreductase
MNIAIIGSGIAGLTCAWRLAGHHQVTLFEAGATPGGHTATVDVATPQGTWAIDTGFIVYNDRTYPRFMGLLSELGIDGQKTQMSFSVHNPTSGLEYNGHSLTSLFAQRRNLLKPAFWGLLSEIVRFNRLAKLALTEALDPGATLESFLARHRFSPFFARHYILPMGAAIWSSSLQEMRRFPLPLFLRFFEHHGLLDIRDRPQWYVVPGGSREYVRALLARLGDRLDLRLNAPVQQVDRHPTGVTLRLASGEAHFDQVIFACHSTQALAMLAAPTDSEREVLGDIGWQRNEVVLHSDPRWLPERQRAWASWNYRLSDGDRARACVTYNMNILQGLPADAPLFCVTLNPDAPVDDRYVWQRFVYEHPLFNPQSWSAQLRREEINGQQRSWYCGAYWYNGFHEDGVRSALDVVQGIAAAEGN
>NZ_CP048379.1|WP_162678056.1|4896847_4897567_+|SDR-family-NAD(P)-dependent-oxidoreductase
MMTVLITGASSGIGAGLAKSFAADGHLVIACGRDASRLSALQQFSPNISGRLFDMTDRDACRQALTGCFADLIILCAGTCEYLDHGQVDAALVERVMATNFLGPVNCLAALQTQLEAGDRVVLVSSMAHWLPFPRAEAYGASKAALTWFANSLRLDWEPKGVAVTVVSPGFVDTPLTRKNDFAMPGRVSVDRAVMAIRHGLEKGKNHIAFPTGFSLALRLLASLPSGIQRLLLRRMVRS
>NZ_CP048379.1|WP_162678055.1|4896416_4896851_+|nuclear-transport-factor-2-family-protein
MSTSLSVIRRFVEYYAGLDAQPPAALAALYHPDATLSDPFGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLYDGQRFAVTWTMHWSHPRIADGETLALPGCSMVDIAGEQILHQRDYYDAGEMIYEHLPLLGWAVRGVKRRVRS
>NZ_CP048379.1|WP_061155921.1|4895456_4896185_+|MerR-family-transcriptional-regulator
MPYSIGEFARLCGINATTLRAWQRRYGLLKPLRTDGGHRQYSDDDVQQALKILDWVKKGVPVSQVKPLLSRPGARRTNNWLTLQETMLQRLKEGKIESLRQLIYDAGREYPRQELVTEVLRPLRSQVSANVPAIMTLREILDGIIIAYTSFCLEGDKKAPGDNFLITGWHLTDACEIWLEALKRTGQGHRIDVLPVPPAALAPEIFPERNWLLVTSGKLSAARQRQVELWQQQVVSLEVIPL
>NZ_CP048379.1|WP_023296979.1|4903674_4905057_-|carbohydrate-porin
MTMIKKLPLTMAVIAAFFPLTSVMAQEFTQEQIDAIVAKAVDKALADRQAKIDAAANKKVDVITNPQTTAASPDMAIPFGLKFSGYARYGAHFQTGDQKYVGVDGSYNGASAIGRLGNESNGGEFQISKAFKSAQGAIWDLNVMFDHWSDEVNLKKAYVGVTNVLESNPNAYLWAGRDFHQRPQQGINDYFWMNHDGQGAGVKNFDIGGVQFDVATVSQVKSCSPEVMADETNPSRITCTGSSDTGDNGHYALTTKTHNIKAGPIDVEVYANYGFDSKAVDSDARLEAWQGGLVLSHTNDSGVNKVILRYSDNSDNSVYNKTDDLTTVYASFEGSHKFTQQAQIEYLLAFHDYDNGKDNTDNRKNYGAIVRPMYFWNDVHSTWLEAGYQRVDYDQGGDNHGWKLTLSQNIAIGMGPEFRPMLRFYVTGGQVDNEHTAKVNGTQDQQLDSLNVGGMFEAWF
>NZ_CP048379.1|WP_032736746.1|4905326_4906646_-|xylose-isomerase
MQTYFDQVDRVRFAGPKTDNPLAFRHYNPDEIVLGKRMAEHLRFAACYWHNFCWNGADMFGAGSFERPWQAAGDALEMAKRKADVAFEFFYKLNVPYYCFHDVDVSPEGASLKEYLHNFAVMTEVLAEKQQQTGVKLLWGTANCFTHPRYGAGAATNPDPEVFAWAATQVVTAMNATHQLGGENYVLWGGREGYESLLNTDLRQEREQIGRFLQMVVEHKHKIGFGGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLENEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDAQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDMFYGHIGAMDVMALSLKLAARMIEDGKLDQGLAKRYAGWQGELGQKIMTGQMSLDNIARYAEQHNLNPQHQSGRQELLENLVNTYIFG
>NZ_CP048379.1|WP_162678347.1|4907072_4908512_+|MFS-transporter
MHSRHEEYHKLTRGERIGYGMGDFAQNLVFGTIGGFLALHMLTVNTISTATAGFIFLFVRIINVFWDPMVGTYVDKRTSKAGKYRPWLLRAGVPLVILSALLFAPIPGVKGSVAFAFIIYLALDLVYSLVNIPYGSLNASLTRDPESIDKLTSTRMMLANSANLLVYTLFPMFVQMAAPKDRSLKDTGFFGLELNLGNYTDPSANYAWFGVYAIYMIIGAVALFICYKFTKERVVATAEQTANVKTTDLFHELRHNRPLVILGMFFMLAFTFMFFMNTVNGFFNQYVVGHSEWMGAVGLVASIPGIAFPVFWPKLKKIFGKKGFFHLFLAMFIVGELLTYVWSREGMHDALWLAYIATFIKQWGLTSATGFMWALVPEVIAYGELKSGKRNAAIINAIMGLFFKIGFTIGGAIPLWLLAVYGFNESGAMQSASAIDGIIMTAVWIPIALAAISMVIIQAYPISDKHVTDINRQLDEIRV
>NZ_CP048379.1|WP_162678062.1|4908570_4910250_+|glycoside-hydrolase-family-43-protein
MSLIQNPILRGFNADPSIIRVEDTYYIANSTFEWFPGVRLHESKDLKNWNLLPSPLSTTTLLDMKGNPSSGGIWAPALSWADGQFWLVYTDVKVTEGAFKDMTNYLTTAKDIRGPWSDPIKLNGVGFDASLFHDDDGRKYIVQQTWDHREYHHPFDGITLTELDTNTLKLMPETARTIYRGTAVALVEGPHLYKLNGYYYLFAAQGGTVFTHQEVVARSKTLEANSFETEPGDVFLTNVDTPDSYIQKQGHGALVSTPEGEWYYASLCARPWNRPGESIYDPRGWSTLGRETSIQKVYWDDEGWPRIEGGHGGKTFVEGPKDAIFTESASDNSQQDDFTSPALDPNWNTLRVPFTAKMGTTGNGKLTLIGQGSLANTHDLSLIARRWQAFYFDAAVKVKFEPFSYQQMAGLTNYYNDRHWSFVFLTWNEINGKVIEVGENNRGKYTSYLKDNAIKVPDGVEYVWFRTKVRKQTYSYEYSFDGVTFTEIPVQLDAAVLSDDYVLQSYGGFFTGAFVGLAAVDYAGYGTQAEFYQFEYQELGDRLAADGSYSWEAGETRDK
>NZ_CP048379.1|WP_162678063.1|4910494_4911364_+|HNH-endonuclease
MPSSTTLQHAIENITIWRKGEQRAPHKPLLLLYVLSQYQRGHARMFDYASEIRDELYSLLERFGPQRRQYRPDMPFWRLKGDGFWELHNSEQCSTQGSRQPPGKELELCHVAGGFDEPHFALLSRNKKLINTLAHQILEAHFPESIQEELAEEMGFDLLQIRKERDPHFRQQVLRAYNYECAICGFNMRHDNTSVALEAAHIKWKQHGGPCEIPNGLALCAIHHKAFDKGSIGLDEDMRIQVSPAVNGGGIVGRLFWDFDGKPITLPQGKECYPQEGFVAWHRREVFRG
>NZ_CP048379.1|WP_001757896.1|4911695_4912703_-|restriction-endonuclease
MGNRMWMIRGDGGKLYDDFRDKQIVGIGWSQLAPLVKPGLSRAQLLALYQEADPLTKLGTARSGASQVWRFVNEIQKGDWVITYSPANRTYLLGKVTSDFQYHPEWVEEGMGIARQVKWNTQEIDRDRLSVATKNTLGSTLTVFQLPEYALEELLQDKKPTIDVITQNPVAMDEDEVVSDPLRDMEMLAFEGIKDRINSLDWDEMQNLVAGVLRSMGYKTQVSPAGADRGKDIIASPDGFGFENPRIIVEVKHRREQMGSQQIRSFIGGRHKDDRGLYVSTGGFTKDARYEADRSTIPLTLWTLDDLVRALIENYEQVDIETKLLVPLKKTFLPA
>NZ_CP048379.1|WP_162678064.1|4912966_4913308_-|toxin
MKTLPATNPQAATLYLSPVVVWQMLLARLLEQHYGLTLNDTPFSDETVIQEHIDAGISLADAVNFLVEKYGLVRIDRRGLDWQEQSPYLRAVDILRARQATGLLKRNRISAAR
>NZ_CP048379.1|WP_162678065.1|4913328_4913670_-|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin
MKSTDSENDSFLKWGLNCNMTPCFGARLVQEGNRLHYLADRASITGKFSEAECLKLDVAFPHFISQMESMLTTGEMNPRHAHSVTLYHNGFTCQADTLGSCGYVYIAVYPTHR
>NZ_CP048379.1|WP_017880113.1|4913680_4914223_-|DNA-repair-protein-RadC
MNIALSPVSSQPELFPLAVMAQHDYLLTATSGLTPYAQRTIRRATNLLDKYLRQPGISFTSSTAARDWLRLQLAGQEREVFMVLYLDNQHRLLESETLFAGSINHVQVHPREVVKSALRFNAAAVVLAHNHPSGDPEPSQCDRNITGRLKEALALVDVNTLDHLVIGSDGIVSFAERGWI
>NZ_CP048379.1|WP_060175537.1|4914235_4914676_-|antirestriction-protein
MDTHNPEFAEQAAITASVVADELRIGFWPKRFGSIPQWITLEPQIFGWMDRLCADYSGGVWSFYTLSNGGAFMAPEPDGEKWTLFNPMNGNDAEMSGEAAGIAACLMAYSHHACRTECDAMTEHYYRLRDYALNHPECSAIMHLID

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Crispr_ID: NZ_CP048379_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048379_8

5493074-5493172

Orphan

Consensus_repeat	Method
CCGTTCCCTCGCCCCTTTGGGGAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048379_8

>merge|NZ_CP048379|8|5493074-5493172|CRISPRCasFinder
CCGTTCCCTCGCCCCTTTGGGGAGAGGGGGAAAGGCTGGTCCTCTGCGCGAGGCCGCCAGCGGACGCCGGACCGTTCCCTCGCCCCTTTGGGGAGAGGG

>NZ_CP048379|8|6|5493074-5493172|CRISPRCasFinder
CCGTTCCCTCGCCCCTTTGGGGAGAGGG	GGAAAGGCTGGTCCTCTGCGCGAGGCCGCCAGCGGACGCCGGA
CCGTTCCCTCGCCCCTTTGGGGAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048379.1\|WP_162678204.1\|5485221_5485536_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224362
NZ_CP048379.1\|WP_032741520.1\|5489681_5490941_+\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
NZ_CP048379.1\|WP_162678211.1\|5499106_5500372_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236549
NZ_CP048379.1\|WP_100682016.1\|5502651_5503647_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380665
NZ_CP048379.1\|WP_162676779.1\|5485465_5486008_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048379.1\|WP_162678203.1\|5484101_5485229_-\|PTS-fructose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224218
NZ_CP048379.1\|WP_162678202.1\|5481414_5484006_-\|alpha-mannosidase	unknown	unknown	gnl\|CDD\|182093
NZ_CP048379.1\|WP_162678213.1\|5503736_5504285_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP048379.1\|WP_008807883.1\|5491090_5491921_+\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
NZ_CP048379.1\|WP_162678212.1\|5500413_5502537_-\|alpha-galactosidase	unknown	unknown	gnl\|CDD\|225882
NZ_CP048379.1\|WP_162678209.1\|5496879_5498028_+\|lactaldehyde-reductase	unknown	unknown	gnl\|CDD\|341467
NZ_CP048379.1\|WP_162678208.1\|5495718_5496723_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP048379.1\|WP_162678210.1\|5498461_5499055_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|181930
NZ_CP048379.1\|WP_162678206.1\|5493206_5494718_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP048379.1\|WP_002882891.1\|5486152_5486998_-\|HTH-type-transcriptional-activator-RhaR	unknown	unknown	gnl\|CDD\|184093
NZ_CP048379.1\|WP_061156241.1\|5487071_5487908_-\|HTH-type-transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|184094
NZ_CP048379.1\|WP_162678205.1\|5488218_5489685_+\|rhamnulokinase	unknown	unknown	gnl\|CDD\|182609
NZ_CP048379.1\|WP_002882870.1\|5498024_5498339_+\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
NZ_CP048379.1\|WP_162678207.1\|5494714_5495722_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP048379.1\|WP_008807884.1\|5492002_5492989_+\|rhamnose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|131685

Protein	Function_ID	Function_description	E-value
NZ_CP048379.1\|WP_162678204.1\|5485221_5485536_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224362	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism].	9.47773e-40
NZ_CP048379.1\|WP_032741520.1\|5489681_5490941_+\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
NZ_CP048379.1\|WP_162678211.1\|5499106_5500372_-\|MFS-transporter	gnl\|CDD\|236549	PRK09528, lacY, galactoside permease; Reviewed.	0
NZ_CP048379.1\|WP_100682016.1\|5502651_5503647_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380665	cd20010, PBP1_AglR-like, Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) and similar proteins. Ligand-binding domain of DNA transcription repressor specific for alpha-glucosides (AglR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.37044e-91
NZ_CP048379.1\|WP_162678205.1\|5488218_5489685_+\|rhamnulokinase	gnl\|CDD\|182609	PRK10640, rhaB, rhamnulokinase; Provisional.	0
NZ_CP048379.1\|WP_162678203.1\|5484101_5485229_-\|PTS-fructose-transporter-subunit-IIC	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	2.25028e-93
NZ_CP048379.1\|WP_162678202.1\|5481414_5484006_-\|alpha-mannosidase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
NZ_CP048379.1\|WP_162678213.1\|5503736_5504285_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.21772e-12
NZ_CP048379.1\|WP_008807883.1\|5491090_5491921_+\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	0
NZ_CP048379.1\|WP_162678212.1\|5500413_5502537_-\|alpha-galactosidase	gnl\|CDD\|225882	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP048379.1\|WP_162678209.1\|5496879_5498028_+\|lactaldehyde-reductase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP048379.1\|WP_162678208.1\|5495718_5496723_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.28147e-75
NZ_CP048379.1\|WP_162678210.1\|5498461_5499055_-\|galactoside-O-acetyltransferase	gnl\|CDD\|181930	PRK09527, lacA, galactoside O-acetyltransferase; Reviewed.	2.7761e-88
NZ_CP048379.1\|WP_162678206.1\|5493206_5494718_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP048379.1\|WP_002882891.1\|5486152_5486998_-\|HTH-type-transcriptional-activator-RhaR	gnl\|CDD\|184093	PRK13502, PRK13502, HTH-type transcriptional activator RhaR.	4.8196e-163
NZ_CP048379.1\|WP_162678207.1\|5494714_5495722_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.99627e-79
NZ_CP048379.1\|WP_002882870.1\|5498024_5498339_+\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	4.89541e-61
NZ_CP048379.1\|WP_061156241.1\|5487071_5487908_-\|HTH-type-transcriptional-activator-RhaS	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	0
NZ_CP048379.1\|WP_008807884.1\|5492002_5492989_+\|rhamnose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|131685	TIGR02637, putative_secreted_solute-binding_lipoprotein, rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.	4.89856e-144

>NZ_CP048379.1|WP_008807884.1|5492002_5492989_+|rhamnose-ABC-transporter-substrate-binding-protein
MKTKTSLILTVAALALSGSALAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYTGPTTTTAEAQIDVLNGLIAQGVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQIHLNPSNNALIGETNVKLAADALKALNVEKGEVAVLSATPTSTNQNIWIEEMKKVLPQYPSVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKVYVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMGKLGKVKLDAEGNGAMAEPFVYDASNIDKFSKIF
>NZ_CP048379.1|WP_008807883.1|5491090_5491921_+|rhamnulose-1-phosphate-aldolase
MQTIIDAWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIEPYAADFHAKPRYIALSQPMPILANQPFIVTGSGKFFRNVQLDPAANLGVVKVDSDGAGYHILWGLTEDAVPTSELPAHFLSHSERIKLTGGKDRVIMHCHATNLIALTYVLENHSDLFTRKLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAETMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVLVKVLSMGGMKQTITREELIALGKRFNVQPLQSALDLYP
>NZ_CP048379.1|WP_032741520.1|5489681_5490941_+|L-rhamnose-isomerase
MTTQLEQAWEIAKQRYAAVGVDVEEALRQLDRLPVSMHCWQGDDVAGFENPAGSLTGGIQATGNYPGKARNAEELRADLEQALSLIPGPKRLNLHAIYLESDAPVARNEIKPEHFKNWVTWAKANKLGLDFNPSCFSHPLSADGFTLSHANDEIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWVPDGMKDITVDRFAPRQRLLNALDEVISEKFDPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYIPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAQLRQLENDGDYTARLALLEEQKSLPWQAIWEMYCQRHDTPAGSQWLDNVRAYENAVLSQRG
>NZ_CP048379.1|WP_162678205.1|5488218_5489685_+|rhamnulokinase
MSIRHCVAVDLGASSGRVMLASYQSGPRALTLREMHRFTNSLQKVDGFDCWDVDSLEGEIRRGLEKVCEQGILIDSIGIDTWGVDYVLLDKQGQRVGLPISYRDDRTQGLLRHAEEQLGRAEIYRRSGIQFLPFNTLYQLRALVEQQPELVSQAAHALLIPDYFSFRLTGNLNWEYTNATTTQLVNINSDSWDETLLNWTGAPLAWFGKPTHPGNVIGHWICPQGNRIPVVAVASHDTASAVIASPLADRHAAYLSSGTWSLMGFESLTPYTCDAALQANITNEGGAEGRYRVLKNIMGLWLLQRVLKEQNVSDLQGLIARTAALPACRFMIDCNDDRFINPASMSAEIQAACRDAGQPVPESDAELARCIFDSLALLYARVLNELAALRGQPFSQLHIVGGGCQNALLNQLCADACGIAVVAGPVEASTLGNIGIQLMTLDELANVDEFRQVVRDNAALTAFTPNPDSEIARFVAQFQPQQTKELCA
>NZ_CP048379.1|WP_061156241.1|5487071_5487908_-|HTH-type-transcriptional-activator-RhaS
MTILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGTGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTDNLCLTNVLYRAPDAFRFLAGVNQLLPQEQEGNYPSHWRVNQTVLQQVRHIVAQMEAMGSETDTHAVASREILFMQLLVLLRKSSLAEEATNNDARLNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVTDIAFRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ
>NZ_CP048379.1|WP_002882891.1|5486152_5486998_-|HTH-type-transcriptional-activator-RhaR
MAGLILRKEEFFPSATQAVAVADRYPQNVFAEHTHEFCELVLVWRGNGLHVLNDRPWRITRGDLFYIRAEDKHSYASVNDLVLQNIIYCPERLQLNFDWAGAIPGLFGTPWKPHWRMGSTGMAQARQVISQLEHECARRDAQGNAMAELLFAQLALTLQRHRYATDDPAATQREALLDKLLAALAASLSRPFVLERFCEQEGGSERALRQQFRQQTGMTINHYLRQLRICHAQYLLQHTERLIGDIAMQCGFEDSNYFSVVFSREIGMSPGQWRQRSRAAA
>NZ_CP048379.1|WP_162676779.1|5485465_5486008_-|hypothetical-protein
MLTSFILRVLKSITLILLSADSKIKVMLADLCWFNSVNDLVESDITSTSCAESQITQKWSQLWDCAGQALCSGFSQSGDMKRYAHRQFPQVLLCSRKRDELAFSFRISSLHQLVVCRHASGADSDSVVNNPIYFSQSTMRVFAIVLFLSPESTRRMRYVHCLCSCLPNGRSPYLYGCGIA
>NZ_CP048379.1|WP_162678204.1|5485221_5485536_-|PTS-sugar-transporter-subunit-IIC
MYIVCVAACPTGVAHTYMAAESLEITGKNRGHEVKVETQGSLGAENVITDDDLVRADAVIIAADVAIDGKARFDGMIKLECAVSDPIKFGDAVFEAVEQEVANG
>NZ_CP048379.1|WP_162678203.1|5484101_5485229_-|PTS-fructose-transporter-subunit-IIC
MAKFQGGGKASAGAEVKNAIMTGVSWMLPFVIAGAVLMGIARIGASAWGIDNIWDASHEQAASLVVQVLHKFDGFGGLALSLMLPIVAGYISFALANKPGLAPGMVGGLLASNLGTGFLGALAAGFVAGYIVRALNRYVKLPKALASAGPIFILPVGGTLLTCVIMAFVIGAPLAALNHGMESWLLSMSGTNKVLLAAVIGGMVGFDLGGPVNKAAVTTAMALLASGIYDPNTAAQVAIIVPPIGLGVATLIWSSRFPESLREAGKASTLMGLIGVSEGAIPFALSNPRIIIVNVIGSAVGAAMAVGLGAVNHAPISGFYGWLAVESWPVYVLSIVCGSAIITVGSLLIFRGISENTEKDSMKKNSPAPKFKASR
>NZ_CP048379.1|WP_162678202.1|5481414_5484006_-|alpha-mannosidase
MKTVHLIQHTHWDREWYFTENDSQALLYYFMADLLARLEADETLGPFMLDGQTVVLEDYFQLAPENRDRVQALVAAGRLLIGPWYTQTDFLVVGAESITRNLLLGALDCENMGPRMAVGYVPDSFGQSAQLPMFLNQFAIEYAVIWRGWSEYDSATSEFCWRSQDGSSVTTAVLPQGYGCAKWLPTEPEQAWPRLSAILEKQGLFSRSSQLLLPNGNDQSPFEYGVPAMLEALNAQQTHYRFIRSDFKSCFTALAQSGTPLDTYEGELLSPKYMRIHRGIFSTRMDIKQANARLENFLSRQLEPLLSVAWRLGLPYPQQAVETIWREMMKSHAHDSIGGCNSDRVNAMVKARLLSGQEKANQLYELNMQMLAKGISAQQQGKKILIFNALPYSRDGLVALTLYLPGTDFRIVDGDGQPCRWQIMRETSQDMSVIVQELSNGSEAVFYRKCEILLEASALPACGYTTFYLQEGLTCGFTVPVSTNCALENPWLRLTLEQGRVNLLDKRSGKRWEDVIHLVDGGDAGDTYNYSPPEIDWRISTEGTLVSADWQQGALADTLELSWSIAAPLTLEDRQRRHCNARLDVSMLFTLAHQRPTLDVQVRVNNTLRDHRLQIEIPTDVAQNIHFADQPFGLIRRDNRPATLDIWQQENWSEAPAALWPMQSLVMMHDGQQGMSVVTEGLREYEIPEARPSVLAITLLRSVGWLGKAGMPWRPGRASGMALPSPDSQIPGEFTARFALIPLHDGESPAFWRAVESWRTPAIGWLDSGWARFKTNPSDLTFPLTFSLLSWETPLHFSTLKKAQYEDTLILRGWNPGLQPVSSPAPETADDLCEVTLAERAGVLPRPLVPACAPVTWRIASKS
>NZ_CP048379.1|WP_162678206.1|5493206_5494718_+|sugar-ABC-transporter-ATP-binding-protein
MSASTPLLSLKGITKIFPGVRALENVQLDLWPGKVTALIGENGAGKSTLVKVMTGIYQPEEGEILYKAIPIHLSTPESAHKVGITAIHQETVLFDELSVSENIFVGQYLYKGLLKTLDWPAMHRRASEILTRLEVQIDPRATLKTLSIAQRHMVAIARALAFDAQVVILDEPTAALSQHEILEFYHIVERLKQDGKAILFISHKFDEIFELADYYTILRDGVYVSSGAISDITEERMVSMMVGRAITQTYPKVDCTPGETVLEVSDLCHPTEFAHISFRLRKGEILGFYGLVGAGRTELMQALSGVSRPSSGEIRLNGRTMRFHQPADAIRAGIVCVPEERQKQGAIIALPIAQNISLPQLSKLNPNGILNDAREWRLAEEYASRLQVKAFSWRQPVETLSGGNQQKVVIGKWLATQPEVIILDEPTKGIDIGSKAAVHQFMSELVSQGLAVIMVSSELPEVMGMADRIIVMHEGLMVAEYQAGEATAETIVSAASGIGQEAA
>NZ_CP048379.1|WP_162678207.1|5494714_5495722_+|ABC-transporter-permease
MMGHAWLKHREALLAVVIILMIGAIGSRAPSFISPANLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYPGIPVVALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLTDGGWVNSHQMSADFLSLPRSTLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGSGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVMAVLLNERGNRGHGRLILRNAALARQKQAVKS
>NZ_CP048379.1|WP_162678208.1|5495718_5496723_+|ABC-transporter-permease
MSKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFTFTEKAIVVLPMAMLIIAREIDLSVASTMALSSTVMGFCAAAGMDTPLLVVIGMGVGLLCGLFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNHYPESFAWFGQGYVWGALSFEFALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAAVLLTSRLGSTRPTLAMGWELAVITMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLLNVPGIVMSVIIGAMLIVVISLPIITRRMMQRRRC
>NZ_CP048379.1|WP_162678209.1|5496879_5498028_+|lactaldehyde-reductase
MSFMLALPKISLHGAGAIGDMVRLVAGKQWGKALIVTDGQLVKLGLLDSLFSALDEQQMAYQLFDDVFPNPTEALVQQGYAAYQAAHCDYLIAFGGGSPIDTAKAIKILTANPGPSTAYSGVGKVKNAGVPLVAINTTAGTAAEMTSNAVIIDSERQVKEVIIDPNLIPDIAVDDASVMLDIPPAVTAATGMDALTHAIEAFVSVGAHPLTDANALEAIRLINLWLPKAVDDGHDLQAREQMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPIIENFNRPNAVARFARVAQAMGVDTRGMSDEAASMEAINAIRTLSKRVGIPQGFSQLGVSKADIEGWLDKALADPCAPCNPRPASRDEVRELYLEAL
>NZ_CP048379.1|WP_002882870.1|5498024_5498339_+|L-rhamnose-mutarotase
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKDHGAHHYAIYLDKERHLLFATVEIESEARWEAVASTEVCQRWWKYMREVMPSNPDNSPLSAELKEVFYLA
>NZ_CP048379.1|WP_162678210.1|5498461_5499055_-|galactoside-O-acetyltransferase
MMDMKKRMNSGELYLDAGYGLPEQRLMGKARAYEYNHSHPFNQELRNGIIQRMFAKVGEQCWIEPPINIAYGIHTTIGDNFYANFNLTLVDDADIIIGDNVMFAPNVTISTAGHPIHPALRHTHQQFSLPVVIEDGVWLGTGVIINPGVTIGENSVIGAGSVVNRSIPANVVAAGVPCRVLREITDADKDKYALFPG
>NZ_CP048379.1|WP_162678211.1|5499106_5500372_-|MFS-transporter
MNPTVCTHKNNPNFWIFGLFFFLYFFIMATCFPFLPIWLSDVIGLNKTETGLVFSSLSLFAICFQPVLGVISDKLGLKKHLMWIVTVLLVLIAPFFLYVFAPLLKTNIWLGALSGGAYIGFVFSAGAGAMEAYIERVSRNSGFEYGKARTFGCLGWALCATTAGMLFSINPEWVFWMGSAAALLLVVLVAIAKPQASQSAQVMDSLGANRPAIDLKTAVRMFRQRKMWMFILYVIGVACVYDVFDQQFATFFKSFFATPEAGTRAFGFATTAGEICNAIIMFSSPWIINRIGAKNTLLIAGIVMAARMIGSSFATTAAEVVALKMLHALEVPFLLVGAFKYITGVFDVRLSATIYLVGFQFAKQVAAIFLSAFAGNMYDRIGFQETYMILGGIALTVTLISAFTLAGKAKTEPLRDNAMTV
>NZ_CP048379.1|WP_162678212.1|5500413_5502537_-|alpha-galactosidase
MSDSLIHLQSAGADVVIKTRPFAEIVYWGPHLSHFSPQDADSLTRPVANGRLDVDSPVTLMAELGHGLFGAPGIEGHRQGLDASPLFTTSEVRHEGQTLTLVSEDPQAGLRLHSEIALDASGVLSVRHGVTNLRASPWQVDRLAVTLPVAERAREVMAFHGRWIREFQPHRLVLEHDSFVLENRRGRTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGRRYLQAEALYLPGEMALAEGETLWTPYLYASYSANGLNGMSQQFHRYLRERIIRFPGNKPRPVHLNTWEGIYFDHDPDYIMRMADEAAALGVERFIIDDGWFKGRHDDWAALGDWYLDEKKYPHGLTPVIDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYTPLTGRHQFVLNLNIPEAFDYLLERMSWLLGEHAVDYVKWDMNRELVQPGHQGRAAADAQTRQFYRLLDTLVARFPHIEFESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHATFRQHSIAFRGLTALFGHMGLELDPVSADEEERAGYRKYAALHKQWREVIHHGMQWRMDMPDATTLAHGVVSPDKAQAIFLVSQLAMPDYSLMAPLRLAGLEASARYQVTLLDHPNIQITGEGGHTMRKLPAWMTTPQTVSGEWLQQAGLALPILDPESAILIGLQRV
>NZ_CP048379.1|WP_100682016.1|5502651_5503647_-|LacI-family-DNA-binding-transcriptional-regulator
MSLKAIAKQLGISVTTVSRALNGYDDVSQETRARVEAEAQRRGYRPNTFARRLKMGTIDAVGLVFPVRPAPLNNNVFLEMVGEISHELARHDIDLLLIADDEQADKHGYMRMVQGRRVDALIVAHTLDDDPRLAQLQASGFPFLALGRSRLAQPYAWFDFDNYAGTCRATRHLIQQGHQRIALLGENNNQAFISQRRNGYLDALREAGLSDAWLRSVPATRRGGYQATLELLRLPEPPTAIITDCNTHGDGAAMALAHLGRLTGDNRVALVVYDGLPQDSIIETDVAAVIQSTRQGVGRQIADMVRRLIAGEDLATLQVLWQPEFFPGETA
>NZ_CP048379.1|WP_162678213.1|5503736_5504285_-|helix-turn-helix-transcriptional-regulator
MTQPISVIAKSLVLERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVGLTSAPEELGEGDYICYPADQEHVFQALEPDTQALLIAEQN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	99076-99113	4	0.895
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	103227-103264	4	0.895
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	186184-186221	4	0.895
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	573935-573972	4	0.895
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	598211-598248	4	0.895
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	106348-106385	5	0.868
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	261716-261753	5	0.868
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323501-323538	5	0.868
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	609564-609601	5	0.868
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	26963-27000	5	0.868
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	583045-583082	6	0.842
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	669532-669569	6	0.842
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447654-447691	6	0.842
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	NZ_CP023144	Escherichia coli strain CFSAN061770 plasmid pEGY2, complete sequence	61983-62020	6	0.842
NZ_CP048379_6	6.1\|4547524\|38\|NZ_CP048379\|CRISPRCasFinder	4547524-4547561	38	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	406307-406344	7	0.816

1. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 4, identity: 0.895

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
agtgcgtagccccggtaagcgctagcgccaccggggag	Protospacer
*   .*********************************

2. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 4, identity: 0.895

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcggcagcgccaccggggat	Protospacer
.******************** .**************

3. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.895

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcgagagcgccaccggggat	Protospacer
.********************  **************

4. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.895

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcgacagcgccaccggggat	Protospacer
.******************** .**************

5. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 4, identity: 0.895

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcggcagcgccaccggggat	Protospacer
.******************** .**************

6. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.868

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcggcagcgccaccggggga	Protospacer
.******************** .*************..

7. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.868

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcggcagcgccaccggggga	Protospacer
.******************** .*************..

8. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.868

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gtgttgtagccccggtaagcggtagcgccaccggggat	Protospacer
..*.***************** ***************

9. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.868

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gtgccgtagccccggtaagcggtagcgccaccggggat	Protospacer
..**.**************** ***************

10. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.868

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcactgtagccccggtaagcggcagcgccaccggggat	Protospacer
.*.****************** .**************

11. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.842

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
ggttggtagccccggtaagcgttagcgccaccggggag	Protospacer
.  . ****************.****************

12. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 6, identity: 0.842

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gcgctgtagccccggtaagcggcagcgccaccgggatt	Protospacer
.******************** .************.

13. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.842

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
gtgctgtagccccggtaagcggcagcgccaccggggga	Protospacer
..******************* .*************..

14. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to NZ_CP023144 (Escherichia coli strain CFSAN061770 plasmid pEGY2, complete sequence) position: , mismatch: 6, identity: 0.842

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
agcgagtagccccggtaagcggcagcgccaccggggag	Protospacer
*    **************** .***************

15. spacer 6.1|4547524|38|NZ_CP048379|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.816

acgctgtagccccggtaagcgctagcgccaccggggag	CRISPR spacer
ggttggtagccccggtaagcgtaagcgccaccggggag	Protospacer
.  . ****************. ***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1303629 : 1357234

Salmonella_phage(40.0%)

holin,integrase,tRNA,tail,capsid,terminase

attL 1316283:1316309|attR 1358469:1358495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061153674.1\|1303629_1304904_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_061153675.1\|1304938_1305559_+	YfgM family protein	NA	NA	NA	NA
WP_136027310.1\|1305569_1306748_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_061153676.1\|1306861_1308340_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_162677067.1\|1308707_1309400_+	hypothetical protein	NA	NA	NA	NA
WP_020317242.1\|1309621_1310101_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_162677068.1\|1310285_1311323_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_004201901.1\|1311372_1311591_+	hypothetical protein	NA	NA	NA	NA
WP_162677069.1\|1311574_1312966_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	4.8e-35	33.0
WP_061153681.1\|1313124_1314591_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.5e-87	38.7
WP_016161630.1\|1314658_1316236_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
1316283:1316309	attL	NA	NA	NA	NA
WP_162677070.1\|1316427_1317678_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	8.9e-206	85.1
WP_004200579.1\|1317694_1317886_-	hypothetical protein	NA	NA	NA	NA
WP_110915709.1\|1317882_1318476_-	adenine methylase	T1SA14	Salmonella_phage	2.0e-107	91.4
WP_009485472.1\|1318472_1319342_-	MmcB family DNA repair protein	A9YWY3	Burkholderia_phage	1.3e-59	41.5
WP_040173672.1\|1319338_1319530_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	3.5e-13	62.7
WP_009485474.1\|1319526_1319685_-	DUF1317 family protein	T1SAR0	Salmonella_phage	8.7e-18	80.8
WP_004197333.1\|1319677_1319971_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	2.3e-32	71.1
WP_004144294.1\|1320080_1320329_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_040025492.1\|1320377_1321313_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	2.0e-141	76.7
WP_162677071.1\|1321309_1322131_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.5e-132	81.7
WP_162677072.1\|1322127_1322427_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.3e-19	53.5
WP_162678257.1\|1322434_1323466_-	hypothetical protein	A0A059VK18	Pseudomonas_phage	2.1e-35	51.0
WP_004197420.1\|1323876_1324458_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	4.6e-64	64.3
WP_023285447.1\|1324612_1324846_+	hypothetical protein	T1SAR5	Salmonella_phage	1.2e-23	66.2
WP_162677073.1\|1325192_1325774_+	hypothetical protein	A0A077SLQ8	Escherichia_phage	5.1e-39	51.5
WP_004200565.1\|1325773_1326544_+	hypothetical protein	G9L6A8	Escherichia_phage	5.5e-57	91.7
WP_087812434.1\|1326669_1327014_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	4.1e-52	85.1
WP_162677074.1\|1327672_1327819_-	hypothetical protein	NA	NA	NA	NA
WP_162677075.1\|1329912_1330092_+	hypothetical protein	NA	NA	NA	NA
WP_162677076.1\|1330091_1330430_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.4e-49	88.2
WP_162677077.1\|1330504_1330762_+	lF-82	NA	NA	NA	NA
WP_047718678.1\|1330839_1331430_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.5e-78	78.5
WP_162677078.1\|1331426_1332902_+\|terminase	terminase	Q858H3	Salmonella_phage	8.4e-280	92.9
WP_085287815.1\|1332945_1333317_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	4.4e-60	94.3
WP_004152472.1\|1334209_1334413_+	hypothetical protein	NA	NA	NA	NA
WP_162677079.1\|1334416_1336096_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	3.1e-193	58.9
WP_004152470.1\|1336092_1336398_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_110220416.1\|1336679_1337078_+	peptidase	T1SAP9	Salmonella_phage	2.1e-36	59.5
WP_162677080.1\|1337090_1338098_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.5e-182	93.1
WP_004152466.1\|1338107_1338500_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_025367999.1\|1338492_1338771_+	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_024622836.1\|1338819_1339431_+	hypothetical protein	T1SAQ2	Salmonella_phage	5.4e-47	48.5
WP_162677081.1\|1339430_1341908_+	hypothetical protein	G9L6D0	Escherichia_phage	4.1e-271	57.2
WP_110220411.1\|1341909_1342380_+	hypothetical protein	Q858G2	Salmonella_phage	1.1e-44	55.3
WP_048293158.1\|1342372_1342870_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	4.0e-24	43.6
WP_162677082.1\|1342882_1345627_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	5.1e-97	39.9
WP_162677083.1\|1345626_1349016_+	hypothetical protein	G9L6D4	Escherichia_phage	3.1e-120	41.8
WP_101999915.1\|1349016_1349457_-	hypothetical protein	NA	NA	NA	NA
WP_080842387.1\|1349682_1349919_+	hypothetical protein	NA	NA	NA	NA
WP_004221292.1\|1349955_1350108_-	hypothetical protein	G9L6D9	Escherichia_phage	1.9e-14	85.7
WP_074195329.1\|1350201_1350399_-	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	3.7e-18	63.5
WP_064189924.1\|1350402_1350660_-	DUF1902 domain-containing protein	NA	NA	NA	NA
WP_162677084.1\|1350752_1351442_-	anti-repressor protein	A0A193GYJ9	Enterobacter_phage	1.2e-74	59.0
WP_162677085.1\|1351913_1352765_+	hypothetical protein	NA	NA	NA	NA
WP_162677086.1\|1352757_1352949_-	hypothetical protein	A0A248XD02	Klebsiella_phage	7.8e-05	44.9
WP_085457687.1\|1356146_1356410_+	hypothetical protein	NA	NA	NA	NA
WP_004146394.1\|1356537_1356942_+	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_023339240.1\|1356928_1357234_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
1358469:1358495	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1441699 : 1504793

Enterobacteria_phage(23.26%)

holin,integrase,tRNA,tail,protease,portal,terminase

attL 1464702:1464725|attR 1510356:1510379

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136072334.1\|1441699_1443118_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_100698041.1\|1443170_1443563_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_061153736.1\|1443566_1443920_-	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_162677107.1\|1444540_1446712_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012540950.1\|1446760_1447963_-	nucleoside permease NupC	NA	NA	NA	NA
WP_061153738.1\|1448309_1449551_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_061153739.1\|1449608_1449968_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_162677108.1\|1450098_1451091_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_136028385.1\|1451271_1452933_+	indolepyruvate decarboxylase	NA	NA	NA	NA
WP_061156328.1\|1452929_1454165_-	ion channel protein	NA	NA	NA	NA
WP_012540954.1\|1454428_1455394_+	glucokinase	NA	NA	NA	NA
WP_162542808.1\|1455446_1456199_-	response regulator transcription factor	A0A2R2ZGH8	Clostridioides_phage	2.5e-14	26.6
WP_061153743.1\|1456195_1457893_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.0e-47	28.5
WP_162677109.1\|1457891_1458008_+	hypothetical protein	NA	NA	NA	NA
WP_008803894.1\|1458275_1459490_+	alanine transaminase	NA	NA	NA	NA
WP_099119320.1\|1459560_1459632_-	membrane protein YpdK	NA	NA	NA	NA
WP_162677110.1\|1459970_1461167_-	MFS transporter	NA	NA	NA	NA
WP_061153745.1\|1461163_1461622_-	nucleoside deaminase	S4VYZ2	Pandoravirus	4.2e-12	38.5
WP_162677111.1\|1461754_1462663_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	1.0e-09	23.8
WP_162677112.1\|1462693_1463551_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.9e-05	56.8
WP_162677113.1\|1463917_1464400_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
1464702:1464725	attL	NA	NA	NA	NA
WP_162677114.1\|1464919_1466089_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	2.8e-201	85.3
WP_162677115.1\|1466123_1466990_+	hypothetical protein	NA	NA	NA	NA
WP_077270684.1\|1467080_1467266_-	hypothetical protein	G3CFG7	Escherichia_phage	3.6e-15	67.3
WP_162677116.1\|1467273_1467792_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.1e-43	81.6
WP_080870863.1\|1467792_1468047_-	hypothetical protein	NA	NA	NA	NA
WP_162678258.1\|1468039_1469116_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	5.6e-148	73.8
WP_117052037.1\|1469431_1470292_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.0e-71	52.7
WP_162677117.1\|1470373_1471186_-	DUF2303 family protein	NA	NA	NA	NA
WP_065810205.1\|1471229_1471589_-	hypothetical protein	NA	NA	NA	NA
WP_162677118.1\|1471956_1472484_+	hypothetical protein	NA	NA	NA	NA
WP_104456419.1\|1474014_1474437_-	hypothetical protein	A4KWV6	Enterobacteria_phage	2.0e-64	81.3
WP_104456418.1\|1474436_1474895_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	3.0e-74	86.8
WP_104456417.1\|1474887_1475142_-	type II toxin-antitoxin system HicA family toxin	K7PH44	Enterobacterial_phage	3.2e-38	89.3
WP_162677119.1\|1475287_1476001_-	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	1.2e-61	57.8
WP_104456415.1\|1476099_1476342_+	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	6.4e-20	67.1
WP_162677120.1\|1476367_1476838_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-61	76.3
WP_162677121.1\|1477313_1477589_+	hypothetical protein	NA	NA	NA	NA
WP_115234206.1\|1477581_1479111_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	6.6e-203	66.9
WP_162677122.1\|1479107_1480079_+	DNA primase	A0A286N2Q0	Klebsiella_phage	2.3e-108	60.7
WP_162677123.1\|1480048_1480693_+	NinG family protein	A0A1W6JNX3	Morganella_phage	1.1e-39	55.0
WP_162677124.1\|1480689_1481331_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	2.3e-80	67.0
WP_162677125.1\|1481327_1481906_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.9e-50	57.2
WP_162677126.1\|1482043_1482622_+	hypothetical protein	NA	NA	NA	NA
WP_162677127.1\|1483035_1483380_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	8.2e-37	70.2
WP_162677128.1\|1483382_1483922_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.1e-101	98.9
WP_162677129.1\|1483918_1484266_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	6.4e-37	73.0
WP_064151957.1\|1484262_1484532_+	hypothetical protein	NA	NA	NA	NA
WP_085843105.1\|1484488_1484686_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	6.8e-20	83.9
WP_123806884.1\|1485043_1485400_+	hypothetical protein	NA	NA	NA	NA
WP_162677130.1\|1485520_1485706_+	hypothetical protein	Q8W634	Enterobacteria_phage	4.9e-12	63.0
WP_162677131.1\|1486027_1486519_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.1e-66	83.4
WP_162677132.1\|1486518_1488627_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.4
WP_020317294.1\|1488623_1488839_+	hypothetical protein	A5LH28	Enterobacteria_phage	7.7e-25	77.1
WP_057729201.1\|1488835_1490335_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.2e-246	83.4
WP_162678259.1\|1490279_1492295_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.6
WP_014228572.1\|1492375_1492702_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.4e-33	66.4
WP_020317349.1\|1492694_1492988_+	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_020317346.1\|1492977_1493529_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	5.3e-54	67.9
WP_020804325.1\|1493525_1493924_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_023320798.1\|1493931_1494414_+	hypothetical protein	M9NYX0	Enterobacteria_phage	2.6e-60	69.2
WP_162677133.1\|1494456_1494852_+\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	8.3e-09	28.2
WP_032420719.1\|1494872_1495190_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_162677134.1\|1495170_1497867_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	1.5e-202	63.0
WP_029498600.1\|1497866_1498331_+	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-50	56.7
WP_162677135.1\|1498327_1498810_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	2.3e-77	89.4
WP_161637240.1\|1498820_1499201_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	3.2e-66	91.3
WP_162677136.1\|1499197_1502266_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.2
WP_162677137.1\|1502321_1504793_+	hypothetical protein	J7HXC9	Pseudomonas_phage	1.5e-15	33.9
1510356:1510379	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1630459 : 1697029

Salmonella_phage(14.29%)

holin,integrase,tail,capsid,head,protease,portal,terminase,transposase

attL 1639526:1639575|attR 1702649:1702698

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061153830.1\|1630459_1630951_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_008803986.1\|1631104_1632214_-	AI-2E family transporter	NA	NA	NA	NA
WP_061153831.1\|1632548_1632737_-	hypothetical protein	NA	NA	NA	NA
WP_004102265.1\|1632808_1633018_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_061153832.1\|1633351_1634092_+	amino acid ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.5e-14	32.4
WP_061156331.1\|1634100_1634799_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_012541007.1\|1634808_1635561_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_061153833.1\|1635550_1636393_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_008803992.1\|1636397_1636937_+	hypothetical protein	NA	NA	NA	NA
WP_061153834.1\|1637145_1637934_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_061153835.1\|1638158_1638518_+	hypothetical protein	NA	NA	NA	NA
WP_077274669.1\|1638790_1639468_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.4e-48	47.1
1639526:1639575	attL	NA	NA	NA	NA
WP_114262182.1\|1639807_1640089_+	hypothetical protein	NA	NA	NA	NA
WP_114262183.1\|1640093_1640930_+	hypothetical protein	I6PD67	Cronobacter_phage	1.6e-33	35.3
WP_114262184.1\|1641376_1642054_+	hypothetical protein	NA	NA	NA	NA
WP_114262185.1\|1642046_1643228_-\|integrase	site-specific integrase	A0A2D1GN00	Marinobacter_phage	4.5e-26	28.2
WP_004123007.1\|1643230_1643440_-	hypothetical protein	NA	NA	NA	NA
WP_114262187.1\|1643743_1643962_-	hypothetical protein	G8C7S3	Escherichia_phage	9.2e-10	52.1
WP_162677165.1\|1644373_1645060_-	hypothetical protein	H6WRY2	Salmonella_phage	6.9e-19	31.7
WP_114267782.1\|1645396_1645777_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	3.0e-64	94.4
WP_162677166.1\|1645777_1646263_-	hypothetical protein	G9L661	Escherichia_phage	2.0e-76	86.5
WP_162677167.1\|1646262_1646838_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	2.5e-30	55.0
WP_080871641.1\|1646850_1647159_-	hypothetical protein	NA	NA	NA	NA
WP_162677168.1\|1647286_1648072_-	hypothetical protein	A4JX52	Burkholderia_virus	1.1e-60	49.8
WP_162677169.1\|1648064_1648265_-	hypothetical protein	NA	NA	NA	NA
WP_049181653.1\|1648264_1648792_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.0e-62	70.3
WP_023343169.1\|1648927_1649758_-	YfdQ family protein	Q8HAA2	Salmonella_phage	1.2e-126	81.7
WP_162677170.1\|1649810_1650167_-	hypothetical protein	Q8HAA1	Salmonella_phage	8.2e-48	80.3
WP_102017112.1\|1651427_1652060_-	helix-turn-helix domain-containing protein	A0A1W6JP50	Morganella_phage	2.2e-51	58.3
WP_102017111.1\|1652163_1652367_+	hypothetical protein	H9C161	Pectobacterium_phage	2.0e-14	57.6
WP_162677171.1\|1652603_1653074_-	hypothetical protein	NA	NA	NA	NA
WP_162677172.1\|1653153_1653702_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	1.3e-65	68.0
WP_162677173.1\|1653874_1654054_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.0e-14	69.1
WP_038808207.1\|1654043_1654955_+	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	7.0e-51	78.4
WP_162677174.1\|1654951_1655410_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_162677175.1\|1655397_1656780_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	4.4e-105	48.4
WP_162677176.1\|1656772_1658755_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	3.2e-197	52.8
WP_162677177.1\|1658751_1659228_+\|protease	SOS-response repressor and protease LexA	U5P451	Shigella_phage	4.7e-14	60.3
WP_042934062.1\|1659224_1659623_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.2e-44	70.6
WP_162677178.1\|1659712_1660534_+	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	9.0e-90	64.8
WP_162677179.1\|1660615_1661602_+	DUF968 domain-containing protein	Q8SBE5	Shigella_phage	1.3e-90	48.6
WP_142473448.1\|1661620_1662451_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.2e-57	48.0
WP_162677180.1\|1662661_1662853_+	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	1.9e-22	84.1
WP_142473446.1\|1663002_1664052_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	1.3e-170	79.6
WP_142473445.1\|1664434_1664875_+	hypothetical protein	NA	NA	NA	NA
WP_142473444.1\|1664871_1666161_+	hypothetical protein	NA	NA	NA	NA
WP_142473443.1\|1666384_1666810_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.5e-59	83.7
WP_142473442.1\|1666806_1666962_+	DUF3927 family protein	A0A0A0YRI9	Escherichia_phage	3.2e-09	68.8
WP_004139418.1\|1667256_1667646_+	membrane protein	K7PHB9	Enterobacterial_phage	2.4e-48	80.3
WP_142473441.1\|1667635_1667914_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.0e-33	75.0
WP_148850111.1\|1667913_1668543_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	3.3e-92	78.3
WP_103468741.1\|1668545_1668821_+	hypothetical protein	G8C7W1	Escherichia_phage	6.6e-21	65.9
WP_162677181.1\|1669060_1669306_+	hypothetical protein	NA	NA	NA	NA
WP_162676777.1\|1669399_1669753_-	hypothetical protein	NA	NA	NA	NA
WP_110203561.1\|1669684_1670026_+	HNH endonuclease	K7P7P4	Enterobacteria_phage	2.1e-48	76.6
WP_025713390.1\|1670207_1670672_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	3.7e-48	62.7
WP_162677182.1\|1670625_1672362_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	1.7e-138	45.1
WP_162677183.1\|1672368_1673688_+\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	1.3e-138	58.9
WP_040241930.1\|1673663_1674371_+\|head,protease	HK97 family phage prohead protease	Q6JIM8	Burkholderia_virus	2.9e-68	63.5
WP_162677184.1\|1674380_1675601_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	4.9e-140	64.8
WP_100681816.1\|1675902_1676235_+\|head,tail	phage gp6-like head-tail connector protein	Q6JIM5	Burkholderia_virus	1.0e-12	32.5
WP_100681815.1\|1676246_1676585_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	4.7e-37	67.0
WP_162677185.1\|1676581_1677031_+	hypothetical protein	Q9MCS9	Enterobacteria_phage	3.3e-62	81.9
WP_064174273.1\|1677027_1677375_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	3.6e-32	63.7
WP_162678261.1\|1677431_1678136_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.2e-79	66.9
WP_162677186.1\|1678166_1678571_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	4.2e-32	55.4
WP_040213871.1\|1678573_1678879_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.4e-27	64.6
WP_016530182.1\|1678952_1679186_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
WP_162677187.1\|1679246_1682636_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	5.2e-301	56.9
WP_162677188.1\|1682656_1683130_+	hypothetical protein	A0A286S298	Klebsiella_phage	6.0e-54	60.8
WP_080933595.1\|1683116_1683602_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.2e-52	65.6
WP_071010321.1\|1683611_1683992_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	9.3e-58	80.2
WP_162677189.1\|1683988_1687072_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	71.6
WP_072046289.1\|1689408_1689813_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	1.2e-66	95.5
WP_021563201.1\|1689809_1690157_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.3e-61	99.1
WP_080783621.1\|1690205_1691744_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.0e-276	93.0
WP_162677190.1\|1691885_1692062_+	hypothetical protein	NA	NA	NA	NA
WP_162677191.1\|1692061_1692271_+	hypothetical protein	NA	NA	NA	NA
WP_162677192.1\|1692316_1692580_-	hypothetical protein	NA	NA	NA	NA
WP_162677193.1\|1692582_1694496_-	hypothetical protein	NA	NA	NA	NA
WP_162677194.1\|1694634_1695204_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.9e-87	91.1
WP_080900191.1\|1695808_1697029_+\|transposase	ISL3-like element ISCfr12 family transposase	NA	NA	NA	NA
1702649:1702698	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1806977 : 1813906

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100698113.1\|1806977_1807841_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.7e-10	34.5
WP_100676378.1\|1807851_1808625_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-26	37.2
WP_008804075.1\|1808864_1809761_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	3.6e-15	29.8
WP_008804076.1\|1810003_1811365_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.0e-207	94.8
WP_004201558.1\|1811684_1812407_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_101856203.1\|1812403_1813906_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	28.3

DBSCAN-SWA_5

1856055 : 1873907

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043543.1\|1856055_1857462_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_012967599.1\|1857688_1859104_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.1e-53	30.8
WP_162677248.1\|1859126_1860497_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.4e-31	26.0
WP_043874993.1\|1860655_1861720_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-104	54.7
WP_016161468.1\|1861733_1862603_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	66.7
WP_162677249.1\|1862634_1863525_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-27	33.2
WP_162677250.1\|1863539_1864094_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_000704907.1\|1864274_1865441_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
WP_004144151.1\|1865865_1865988_-	small membrane protein	NA	NA	NA	NA
WP_162677251.1\|1866122_1866317_-	hypothetical protein	NA	NA	NA	NA
WP_060619179.1\|1866386_1867391_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	2.0e-30	29.2
WP_162677252.1\|1868242_1869307_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-104	54.4
WP_016161468.1\|1869333_1870203_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	66.7
WP_162677249.1\|1870234_1871125_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-27	33.2
WP_162677253.1\|1871139_1871694_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.3e-51	57.1
WP_158609881.1\|1871782_1872556_+	ABC transporter permease	NA	NA	NA	NA
WP_043874997.1\|1872545_1873907_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-12	27.1

DBSCAN-SWA_6

2913375 : 2922784

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162550795.1\|2913375_2915010_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	5.8e-181	55.5
WP_008804978.1\|2915064_2916330_+	MFS transporter	NA	NA	NA	NA
WP_100631892.1\|2916359_2917448_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	2.4e-207	98.1
WP_008804980.1\|2917535_2917796_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.0e-39	95.3
WP_162677570.1\|2918090_2918951_+	LEN family class A beta-lactamase	A0A077SL40	Escherichia_phage	9.3e-146	92.0
WP_074385925.1\|2918969_2919731_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.0e-132	98.8
WP_162677571.1\|2919991_2920894_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.1e-156	98.0
WP_162677572.1\|2920905_2922171_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.9e-228	97.1
WP_100680178.1\|2922163_2922784_+	aldolase	A0A077SK32	Escherichia_phage	1.7e-112	97.6

DBSCAN-SWA_7

3428393 : 3485831

Klebsiella_phage(37.84%)

holin,integrase,tRNA,tail,capsid,head,terminase,portal

attL 3451002:3451017|attR 3495363:3495378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023322373.1\|3428393_3429452_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.0e-14	31.7
WP_162677739.1\|3429874_3431284_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.1e-84	49.2
WP_162677740.1\|3431345_3443936_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	42.6
WP_099729057.1\|3443993_3444569_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.1e-49	57.0
WP_012542161.1\|3444582_3445290_-	peptidase P60	A0A2H4J1J7	uncultured_Caudovirales_phage	1.3e-60	45.4
WP_012542162.1\|3445292_3446042_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.6e-83	57.2
WP_064184437.1\|3446134_3446494_-	hypothetical protein	NA	NA	NA	NA
WP_044650396.1\|3446506_3446857_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	4.5e-22	41.8
WP_162677741.1\|3446856_3449853_-\|tail	phage tail tape measure protein	A0A2H4J7J3	uncultured_Caudovirales_phage	2.8e-32	25.2
WP_016160678.1\|3450081_3450426_-	hypothetical protein	NA	NA	NA	NA
WP_049013950.1\|3450440_3450920_-	hypothetical protein	NA	NA	NA	NA
WP_064184457.1\|3450940_3451342_-	hypothetical protein	Q6UAX1	Klebsiella_phage	4.3e-37	62.7
3451002:3451017	attL	NA	NA	NA	NA
WP_162677742.1\|3451358_3451739_-	hypothetical protein	Q6UAX2	Klebsiella_phage	3.0e-40	67.8
WP_014228910.1\|3451719_3452058_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_023339902.1\|3452054_3452372_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	5.8e-45	88.8
WP_048964994.1\|3452352_3452640_-	hypothetical protein	Q6UAX5	Klebsiella_phage	2.5e-18	79.6
WP_046622319.1\|3452697_3453984_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	6.3e-207	86.2
WP_033128541.1\|3454061_3454982_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	2.1e-148	87.9
WP_033128540.1\|3455018_3456278_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.3e-222	89.8
WP_017898992.1\|3456277_3456457_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_012542167.1\|3456450_3458172_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.1e-190	57.4
WP_012542168.1\|3458171_3458606_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_101856795.1\|3458938_3459370_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.4e-41	62.0
WP_162677743.1\|3459369_3459690_-	hypothetical protein	NA	NA	NA	NA
WP_162677744.1\|3459641_3460004_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	4.0e-58	84.2
WP_133959449.1\|3460146_3460368_-	DNA gyrase subunit B	NA	NA	NA	NA
WP_162677745.1\|3461178_3461538_-	hypothetical protein	NA	NA	NA	NA
WP_162677746.1\|3461746_3462097_-	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	4.6e-11	36.8
WP_162677747.1\|3462093_3462591_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	8.7e-80	86.4
WP_017880269.1\|3462590_3462806_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_162677748.1\|3463681_3464806_-	hypothetical protein	NA	NA	NA	NA
WP_162677749.1\|3464807_3465998_-	hypothetical protein	NA	NA	NA	NA
WP_162677750.1\|3466023_3466374_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	8.1e-48	74.3
WP_162677751.1\|3466386_3467418_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	1.4e-95	49.3
WP_162677752.1\|3467617_3468010_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	4.7e-12	36.6
WP_162677753.1\|3468361_3468586_-	DinI family protein	K7PM44	Enterobacteria_phage	1.4e-21	67.6
WP_055323494.1\|3469024_3469714_+	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	7.0e-11	28.0
WP_162677754.1\|3469784_3470531_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.0e-07	30.7
WP_012542191.1\|3470849_3471077_+	DUF1737 domain-containing protein	NA	NA	NA	NA
WP_162677755.1\|3471523_3473287_-	EAL domain-containing protein	NA	NA	NA	NA
WP_044613085.1\|3473599_3474040_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_162677756.1\|3474053_3474518_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.6e-62	70.9
WP_080782674.1\|3474510_3475482_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	2.4e-33	38.3
WP_162677757.1\|3475542_3476097_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3476099_3476324_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_077255823.1\|3476412_3476850_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_162677758.1\|3477666_3477861_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3477903_3478248_+	transcriptional regulator	NA	NA	NA	NA
WP_162677759.1\|3478389_3480528_+	exonuclease	S4TNL0	Salmonella_phage	1.9e-99	42.7
WP_012542206.1\|3480580_3480826_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3480806_3481934_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_008806032.1\|3482051_3483302_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_032729972.1\|3483542_3484193_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_061155057.1\|3484209_3484668_+	NUDIX hydrolase	NA	NA	NA	NA
WP_162677760.1\|3484724_3485831_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
3495363:3495378	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3728019 : 3737467

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061155194.1\|3728019_3729741_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	2.6e-14	32.7
WP_162677804.1\|3729762_3730485_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3730836_3731055_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_061155196.1\|3731173_3733453_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_002896520.1\|3733483_3733801_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3734126_3734348_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_061155197.1\|3734414_3736355_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.0
WP_061155198.1\|3736351_3737467_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP048381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1728 : 66839

Escherichia_phage(24.0%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001515717.1\|1728_2469_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_032430957.1\|3544_4567_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_022652309.1\|5073_6552_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.9e-194	73.2
WP_032430841.1\|6569_7397_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-51	40.3
WP_022652307.1\|7478_7682_+	hypothetical protein	NA	NA	NA	NA
WP_021314637.1\|7959_8190_-	thioredoxin family protein	NA	NA	NA	NA
WP_050483874.1\|9361_9871_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_022652302.1\|12032_12743_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.7e-31	37.7
WP_022652303.1\|12744_13950_-	ABC transporter permease	NA	NA	NA	NA
WP_022652304.1\|13946_15098_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004393990.1\|15094_15703_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_022652300.1\|15890_16844_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000493286.1\|17262_17592_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_000780222.1\|17572_17854_+	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_162678359.1\|18131_19112_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	2.6e-184	98.8
WP_087893729.1\|19417_20691_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-146	81.7
WP_001752509.1\|20764_21265_-	non-heme ferritin-like protein	NA	NA	NA	NA
WP_001067855.1\|21591_22296_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000993245.1\|22495_22708_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001446012.1\|22670_22790_+	hypothetical protein	NA	NA	NA	NA
WP_022652270.1\|22773_23010_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277466.1\|23006_23372_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000209296.1\|23389_25075_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_000522996.1\|25113_25539_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|25566_25842_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294653.1\|25857_26253_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|26324_26780_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_022652268.1\|26873_27857_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.3e-47	39.4
WP_162678362.1\|30553_31522_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	4.3e-184	98.1
WP_001395480.1\|32343_33375_-\|transposase	IS630-like element ISEc33 family transposase	NA	NA	NA	NA
WP_069219812.1\|33261_33519_+	hypothetical protein	NA	NA	NA	NA
WP_008322250.1\|33650_34181_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.9e-17	35.8
WP_008322246.1\|34185_34383_-	hypothetical protein	NA	NA	NA	NA
WP_008322245.1\|34888_35920_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_008322243.1\|36206_37160_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_008322240.1\|37224_38757_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-16	29.5
WP_004113181.1\|38743_39763_+	ribose ABC transporter permease	NA	NA	NA	NA
WP_008322237.1\|39840_41211_+	hypothetical protein	NA	NA	NA	NA
WP_008322235.1\|41207_42128_+	carbohydrate kinase	NA	NA	NA	NA
WP_008322233.1\|42673_43090_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261276.1\|43086_43317_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_008322227.1\|43569_44592_-	helicase UvrD	NA	NA	NA	NA
WP_001067855.1\|44677_45382_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000215515.1\|45784_46141_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|49037_49742_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_003124096.1\|49796_50357_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
WP_001138070.1\|50359_53326_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|53404_54409_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|54590_54767_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|55096_55912_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001082319.1\|55972_56776_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_162678363.1\|56775_57612_+	APH(6)-I family aminoglycoside O-phosphotransferase	NA	NA	NA	NA
WP_001120891.1\|57583_58123_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000027057.1\|58332_59193_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|59375_59933_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|60496_61759_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|62014_62890_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|62936_63269_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_162678364.1\|66143_66839_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	5.1e-126	98.1

DBSCAN-SWA_2

78297 : 99959

Escherichia_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152403.1\|78297_81195_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_000509965.1\|81289_81895_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
WP_001351729.1\|82671_83064_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|83201_84086_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|84117_85317_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|85422_86073_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_032140899.1\|86104_86347_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|87968_88673_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840321.1\|88816_89371_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|89501_90332_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_001067855.1\|90963_91668_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|93855_94560_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001097412.1\|95961_96525_-	hypothetical protein	NA	NA	NA	NA
WP_001348195.1\|96548_96923_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001515734.1\|96987_97551_-\|transposase	transposase	NA	NA	NA	NA
WP_000046891.1\|97793_98129_+	thermonuclease family protein	G8DH70	Emiliania_huxleyi_virus	2.8e-05	35.7
WP_001067855.1\|99254_99959_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048380

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP048381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection