CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048020	Treponema sp. OMZ 804 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,DinG,WYL	2	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048020_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048020_1

1328560-1328668

Orphan

Consensus_repeat	Method
CAACACGGCGACCACAGGAGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048020_1

>merge|NZ_CP048020|1|1328560-1328668|CRISPRCasFinder
CAACACGGCGACCACAGGAGGCGGCATCTATATCACCGGAGGCAGCAGCATCGTAACGCTTAACAACGGCGTACAGATTAAGGACAACACGGCGACCACAGGAGGCGGC

>NZ_CP048020|1|1|1328560-1328668|CRISPRCasFinder
CAACACGGCGACCACAGGAGGCGGC	ATCTATATCACCGGAGGCAGCAGCATCGTAACGCTTAACAACGGCGTACAGATTAAGGA
CAACACGGCGACCACAGGAGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048020.1\|WP_162664773.1\|1312604_1314089_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP048020.1\|WP_162663441.1\|1330862_1331654_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048020.1\|WP_162663447.1\|1337612_1339052_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP048020.1\|WP_162663437.1\|1319723_1322606_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP048020.1\|WP_162663431.1\|1311372_1312557_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NZ_CP048020.1\|WP_162663432.1\|1314137_1315475_+\|xylose-isomerase	unknown	unknown	gnl\|CDD\|235487
NZ_CP048020.1\|WP_162663448.1\|1340584_1341145_-\|antiterminator-LoaP	unknown	unknown	gnl\|CDD\|223328
NZ_CP048020.1\|WP_162663444.1\|1334152_1335046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP048020.1\|WP_162663446.1\|1335628_1337314_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP048020.1\|WP_162663433.1\|1315529_1316489_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380530
NZ_CP048020.1\|WP_162664775.1\|1332721_1333903_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP048020.1\|WP_162663445.1\|1335083_1335632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162663438.1\|1322627_1325930_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_CP048020.1\|WP_162663435.1\|1317364_1318936_+\|DUF1957-domain-containing-protein	unknown	unknown	gnl\|CDD\|212104
NZ_CP048020.1\|WP_162663442.1\|1331720_1332011_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP048020.1\|WP_162663436.1\|1318959_1319703_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_CP048020.1\|WP_162663434.1\|1316590_1317277_+\|DUF4912-domain-containing-protein	unknown	unknown	gnl\|CDD\|379808
NZ_CP048020.1\|WP_162663443.1\|1332109_1332649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162663440.1\|1330274_1330505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162663430.1\|1308657_1309737_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380649

Protein	Function_ID	Function_description	E-value
NZ_CP048020.1\|WP_162664773.1\|1312604_1314089_+\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP048020.1\|WP_162663441.1\|1330862_1331654_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.17814e-41
NZ_CP048020.1\|WP_162663447.1\|1337612_1339052_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	3.3141e-176
NZ_CP048020.1\|WP_162663437.1\|1319723_1322606_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP048020.1\|WP_162663431.1\|1311372_1312557_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	6.84833e-116
NZ_CP048020.1\|WP_162663432.1\|1314137_1315475_+\|xylose-isomerase	gnl\|CDD\|235487	PRK05474, PRK05474, xylose isomerase; Provisional.	0
NZ_CP048020.1\|WP_162663448.1\|1340584_1341145_-\|antiterminator-LoaP	gnl\|CDD\|223328	COG0250, NusG, Transcription antiterminator [Transcription].	3.98099e-20
NZ_CP048020.1\|WP_162663446.1\|1335628_1337314_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.95982e-38
NZ_CP048020.1\|WP_162663433.1\|1315529_1316489_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	4.49245e-70
NZ_CP048020.1\|WP_162664775.1\|1332721_1333903_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	9.79873e-32
NZ_CP048020.1\|WP_162663444.1\|1334152_1335046_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	4.84969e-09
NZ_CP048020.1\|WP_162663435.1\|1317364_1318936_+\|DUF1957-domain-containing-protein	gnl\|CDD\|212104	cd10792, GH57N_AmyC_like, N-terminal catalytic domain of alpha-amylase ( AmyC ) and similar proteins. Alpha-amylases (alpha-1,4-glucan-4-glucanohydrolases, EC 3.2.1.1) play essential roles in alpha-glucan metabolism by catalyzing the hydrolysis of polysaccharides such as amylose starch, and beta-limit dextrin. This subfamily is represented by a novel alpha-amylase (AmyC) encoded by hyperthermophilic organism Thermotoga maritime ORF tm1438, and its prokaryotic homologs. AmyC functions as a homotetramer and shows thermostable amylolytic activity. It is strongly inhibited by acarbose. AmyC is composed of a N-terminal catalytic domain, containing a distorted TIM-barrel structure with a characteristic (beta/alpha)7 fold motif, and two additional less conserved domains. There are other two canonical alpha-amylases encoded from T. maritime that lack the sequence similarity to AmyC, and belong to a different superfamily.	3.65909e-157
NZ_CP048020.1\|WP_162663442.1\|1331720_1332011_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.07732e-09
NZ_CP048020.1\|WP_162663436.1\|1318959_1319703_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	6.50857e-172
NZ_CP048020.1\|WP_162663434.1\|1316590_1317277_+\|DUF4912-domain-containing-protein	gnl\|CDD\|379808	pfam16258, DUF4912, Domain of unknown function (DUF4912). This family consists of uncharacterized proteins around 160 residues in length and is mainly found in various Clostridium species. The function of this family is unknown.	3.47727e-12
NZ_CP048020.1\|WP_162663438.1\|1322627_1325930_+\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	4.074e-24
NZ_CP048020.1\|WP_162663430.1\|1308657_1309737_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	2.37817e-154

>NZ_CP048020.1|WP_162663438.1|1322627_1325930_+|LPS-assembly-protein-LptD
MKKPLVSVFCLFLFILSSPSAQIAKEPKVITINSVRVMEVFKKENKAQYSTKPDKTDKKKDTNSSEDKTESPTEQTAGTENISDTQTSVTTEEAQKAVEEKKDDIIVFTGGVSLSVKDGSTVSTIESDKLVYNRSENTIEAEGNVHYSRKSGGSDGAEEFIGELLLFNIDEMEGIFLDGTIKQAPRKQGQSPFTIQSATVGRDSSGVIGFKDAVLSTNPDPDEEPLWSIRASRIWMLPGNELAFANGYFSIGIVPILYLPFFYHPADEMLFHPVFGFRNREGYFLQTTTYLLGRKPLDTDSKKSGSFSNFMKSDRLKKQERIGLFFKNMEEDETDISSAYIKLIADTYSQLGGLVGIEGKTIPKNTPIRQLDFSVFFGMSRTLFPLNRIGTGGISHTTYDTHGKRHYNKGFFLGMQLPFRYRAHINFGISQAPFQLSISVPLISDPYFKKDFFDRSEDMNWFNYLLNKEKLAKGADSIGRESSYSWKIDGSIRPSFRKISPWISSFNLDTASLTVDFSSKTKQSVTAEELYAPQRDFFYPSLFKPEGKISIAGTLLSNTMFNRTPVKKIPDVEGIVHPFITQDKAPSDSESETKTANSKRDFFDTFIPLFKPVYDKEFDHSIAYSLSYSGDFSALQETTFASSQWNNPEDIRWKDYESRYYQLKGSAGLKGSLSYSQNLISLSSNLVISGNYQRHPWTRDVSKKPILELNNFKANVYTLKNENSVTVNPFVYTDLFKPVSFSWNITEILAKNTFIGTYSNPKWETQRVKWNKDFITAHTGTAVFGVILAEKYTQKITFSMNLPPLLQAYTTSLNVSFPYGTFAASTKLSEKEHSAKKWAWEPFKADLTWVLPYDIRIAQTYIYNIQDKSNERLHITFGWKYISAFYTQSREVPQKLVPGSGWVLDGTEKRFIPFALGFSFSNTSNPFTIYAWKNRIKIQLGLSSTLQFNLVRITDSYFTFAPKIIFNIHEFWDFSFGSSSRNDVIARYFQKALNLPVVIPGNTNILTDLAQSFNFWNRSKREASGFKLQSLDIGFTHYLKDWKLKLNCEIKPQLKNEGSRKYYEFSPTITFAVEWNPIGDIKVEAKKKEGKFSVERGELQ
>NZ_CP048020.1|WP_162663437.1|1319723_1322606_+|excinuclease-ABC-subunit-UvrA
MQENETQNSAHVNKLIVKGAREHNLKNIDVELPRDKLIVVSGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLDRMDKPDVDYIEGLSPAISIEQKTTHRNPRSTVGTVTEIYDYYRLLYARTGHPHCPQCGKEIQEQTVDQIIDAIMSWEDRTRVQILAPIIKGKKGEHQKIIEDAQKAGFLRARIDGLTVNLEDGVKLDKQKKHTIEIIVDRIQLSADARKRLSESVETALESSGGTLIALRQKTADDPITEVFFSQKNACPDCGISMPDLQPRLFSFNNPYGACPECTGLGLKQHFDFKLIVPDTSLSFNEGAFLPYNPDSAWNRARFEALARRFGFSLDTPVKELSKKELKIIMDGSGLEPIEFVYERQDGSGKSKYRRPWLGIYADMQRRYNEAYSAAQRESYEKYMAVTTCEHCGGKRLKPEALAVTVGGKNIYELSSLSVGDSITFLERLKLTATEKTIAHQILKEITSRLQFMKNVGLDYITLERKAATLSGGESQRIRLATQIGSSLIGVLYILDEPSIGLHQRDNQRLIDTLLYLRNLGNTLIVVEHDEQTLRVADYIVDLGPGAGVHGGAVVAAGTPDEVMQVKESLTGQYLAGTLCMELPAERRKGNGSFLTLQGVTEHNLKNVSVSIPLGAFTCITGVSGSGKSTLLSDVLYPAVSNALMRSGLPEGAYKKIKGLEHIDKVINIDQSPIGRTPRSNPATYVEVFTAIRDLFANLPEAKARGYKPGRFSFNVRGGRCEHCQGDGAIAIEMNFLPDVYITCDVCRGKRFNKETLDVRYKGKNISDVLEMTIEEAAEFFAPVPQIARKMQTLLSVGLGYIRLGQSALTLSGGEAQRVKLAHELSKRSTGKTLYILDEPTTGLHFADVKQLMEVIQRLVDQGNTALMIEHNLDVILQADHIIDLGPEGGSRGGTVIAEGTPEEVAEVKNSYTGFYIKEMLDRQRQKSS
>NZ_CP048020.1|WP_162663436.1|1318959_1319703_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MKLVLIRHGESEWNKLNLFTGWTDVELSDKGVEEAKEGGKALAAAGFDFDICYTSYLKRAIHTLQFVLDELDRNWLPVVKTWKLNERHYGDLQGLNKAETAEKYGEAQVKIWRRSFDIAPPVLSEDDARCPYLQTAYRGVDKAELPRTESLKDTIARAVPYFESVIKKDMLAGKRVLIAAHGNSLRALIKYFEHLSDEEIVQVNLPTGVPLVYEFDVNFNVVSKAYLGDQEKINAKINAVANQGKAK
>NZ_CP048020.1|WP_162663435.1|1317364_1318936_+|DUF1957-domain-containing-protein
MIKKTLLLIFHAHVPYIRQSDENEPLEAAQLYEMLSYGLLPFLRMCRRLDSDAVSFKCALVISPLLCEMLKSSLWQERYGVYLDRHITFAQQELKRTSGTAREDIVRMYLEFLTLNREDFHTRYKKDILSGINFFVAKGCIELLATSATPCFFPFYQDMPEALTAQIEQGLSSFREDFEAVPAGFWLPSMGYDTGLDSIIKSYGIDYTVLEGQSFLFADRPPVNGVFSAAIGESGLAFLGKDSTACADVTNPETGFYLHPDYLDTDKDVGFEFDEQALSPLFDVKKGRRATGFCYHRRGGGEYNAAAGVLQAEKDAERFIANRNAVLTEAMELLGTDTDPLCSVSVLPLRFLGKTWMEGMRWLEAVFCKVAQRRDMQCALPTEYLKKVRRIQSINPFYASNLPSGYADELINSSNDWMFPRIQKATERMIDLAGRFRNDQGLKERMLNMAARELLLAQSTDWPLMADAQISADYAAAECEEHLAAFTDVYDSLGSGSIGTDRLIKREKEYPIFSDMNYRFFIS
>NZ_CP048020.1|WP_162663434.1|1316590_1317277_+|DUF4912-domain-containing-protein
MNILDDAAMESGSAVKFTRSYLQTLSTDALFALADRYGLFLSSDLTRYLLISELLDLDDGFANDDDSVDPILASTRPQEAAYGYNMTEIRVVLKNPLWFFVFWDFHKRLFTELTEAKDFSFFSLRVHSLDLENPLKSSDFFDIQVPKEDRRRYVHVSFDEYLHRIDLMAHFTNGREQILSQSNVVGMRRKNIPQRLCISQNAVNKIIGLSGLTSLKKSHFRHYRQAFR
>NZ_CP048020.1|WP_162663433.1|1315529_1316489_+|substrate-binding-domain-containing-protein
MGVNPEVAQRVRLIADELGFAPNMAGKILAARKQPIKFGCLLPDVGNPFFDGIIAGFHRAEKELSDFGVSLHIEHIKGFDIATHIHTIEKLASMNLSGVCIATMDIPEVQYTVQRLIEKGIPVISVNTDIPDTDRLCYVGPDYTNGGNTAAGLLSLLTKSELNILIVTGSFHIRGHNERIQGFIQGLIERKSSYTVLSTFESLDDDTYAYETTMSALEKYPETNCIFIAAAGVEGVCKAVDRWHKDSGNRKKPSILSFDDIPATKRLVKDGFIDFTICQEPEQQGYMAVSKLFSYLMAEKKCTPQDYITSTIIKIKENI
>NZ_CP048020.1|WP_162663432.1|1314137_1315475_+|xylose-isomerase
MSYFKGSTEYFPGIGKIRFEGKQSKNPLAFKYYDENKIVLGKPMKEHLRFAIAYWHSFCAAGEDPFGAGTMKFPWNSSTDAMTNAENKADAAFEFITKIGAPYYCWHDRDISPEGKSPAESEKNLIKITDGLYERQKETGVKLLWGTANVFSNPRYMNGAATNPQFDIVAHAAAQVKCAIDATIKLGGQGYTFWGGREGYMSLLNTDMQAEKEHLARFLTMARDYARKQGFTGCFYIEPKPMEPTKHQYDFDAETVIGFLRTYGLEKDFKLNIEANHAELAGHDFYHELSVCVDAGMLGSIDANRGDSRNGWDTDQFPSSIYETALAMRAVLRMGGFKTGGLNFDAKRRRNSTAPEDLFIAHIGGMDMFALGLEKAAALIEDGRIDALVKERYASFAEGKGAEFAAGKMTMESLAALAESYDTVHPASGKQELYENILNEVIFNG
>NZ_CP048020.1|WP_162664773.1|1312604_1314089_+|xylulokinase
MNIVAGIDLGTQSLKAVLYDYEQKRIVAQASCPLDLISKEDGTREQKTEWYDAALKSVFEKLPCELRSQIQAVGVSGQQHGFVPLDKDGQALYNVKLWNDTSTAEECRILTDKAGGNAEVIKEVGNLMLPGFTAPKILWLKKHFPDGWKNVRYILLPHDYINYVLTGSYVMEAGDASGTALFNPVKRRWSRTLCSLIDEGLYDLLAPLIASDTKAGTVSQKAAGLLGIPEGIPVSSGGGDNMMGAIGTGTVSDGFLTMSMGTSGTLYGYSDKPIADPEHGLSGFCSSTGGWLPLLCTMNCTVATERIRSLFGLPVAEFNRLAAAAEPGAQGVRVLPFFNGERTPNLPKGRASITGLTMTNSNKENICRAAMESAVFALKGGLDAFKKLGFEPKEIRLIGGGAKSPLWRQIAADIMNVSVSVPVSEEAAAMGAAVQALWCLEGGTPERIKSLCAEHIQLSKEKSAEPGNAVCEYEQAYRDYNEILGQLTPLYIHG
>NZ_CP048020.1|WP_162663431.1|1311372_1312557_+|sugar-ABC-transporter-permease
MLNTLSIKNILKKNTMFIALIALMILFHALISFADSGSLFAPTNISNIISQNSYVVILATGMLLCILSGGNIDLSIGSIVALIGALAAHLIILLHWNIYVVMILCLLAGTAIGAWHGFWIAYIRIPAFIVTLAGMLLWRGVALIILNGLTLSPFPENYLRYFTGFIPITKDKGLIFSVTVGTAILCCLIFIAKEIVQRIQKKQKAYSTESFGIFLIRIILIPAIVLFLATLLGRHKGIPVILILLTVVVLVYTYITQNTVPGRYLYAMGGNERAAKLSGIDTNKALFFVYVNMGFLSALAALVCVGRFNSAAPTAGMNYELDAIGSCFIGGASAYGGTGSVGGAVVGAIFMGVLNNGMSILGIDSNWQKAVKGLVLLAAVAFDVLSKRREKSSV
>NZ_CP048020.1|WP_162663430.1|1308657_1309737_+|sugar-ABC-transporter-substrate-binding-protein
MKRKIGIALMVFMTGIGALFAGGTTETSEAPRIGVSMPTKDLQRWTQDGDNIRMLLEKSGYKVDLQYANNDIAVQASQIENMLTKNCKVIVIAAIDGSSLTEVLKTAKENGVPVIAYDRLIMNSDAVRYYATFDNYKVGQFQGAYLRDTLKLDTAKEPVYIELFTGSTDDNNVNFFFPGAMDILNPYIKKGVLVVRSGQTEKAQVATPNWSTEEAQKRMENLISAYGYGPTGTKLHAVLSSNDSVAQGITNALVAAGYTKENFPLLTGQDCDITSVKNMLKGRQSMSVFKDTRTLAGKVSEMIDALVKGSKPPINDTKTYNNGTGVIPSFLCEPVFATIDNYKKLLVESGYYTEAQLKN
>NZ_CP048020.1|WP_162663440.1|1330274_1330505_+|hypothetical-protein
MPTMTMTHKAYRELEQAAQMSGATKDTVLENALSRYLAELQEDAEDAALAEKAWFDFEKSGEPAIPAEVLYKELGL
>NZ_CP048020.1|WP_162663441.1|1330862_1331654_-|IS3-family-transposase
MAYRVAATIGKQRSRKKKKQLEQRIISTFAKHKGNYGRIRIKKALEREHIKVSEWKIARIMKENGLIAKGGRKKGRGKRSKMVQQEKIIKQNVIKDKFAVKEVNKLWSSDISEFKITGGKVYVCGIIDVASRVIVGWSIQLHMREVIVHQALKMACGRHVNVPAERYMHTDGGSQFCSKKTTELIEKAGFIKSMSRPGVPQDNQPIESFWKTMKREMPSIRHMKFEQAKATIVEYIELYYNSERLHSSINYRIPNEAYQQLSI
>NZ_CP048020.1|WP_162663442.1|1331720_1332011_-|transposase
MGRVYKNYTKDLKEQACKLVVEKNIPVRIVAEKLSVRVQLLYKWLNQYESYGQEAFVGSGRVRSADAQLKKLQKENEYLKLENEVLKKAAAYFAEK
>NZ_CP048020.1|WP_162663443.1|1332109_1332649_+|hypothetical-protein
MKKNCVKAALCALVFLSGSVLFAQEVEDEPKREKDGLHWSLGISAEGNMNVPKGSALGAGLYGMFVLPNWVKTGRFSAGVKLLYSTGFKSYSLLDTAVLFRWNFYDFAKFKTCDSGFFVQAEGGVSLGWNGKTAKPFVFGLGEGTFGYRFAVKTFFIEPYIRGGYPVIWAAGVSGGFRI
>NZ_CP048020.1|WP_162664775.1|1332721_1333903_+|leucine-rich-repeat-domain-containing-protein
MLVEEGKGNTVPEKPQAPPFVEGGASLILSPNKLVISVKAVTSDGSAVAVEGCTETELTSGTVTVLHAKGTRVILKGKITALGCDNNQLTALNVQGLTALQGLDCHINQLTALNVQGLTALQGLDCLGNQLTELNVQGLTALQYLSCAGNRLTALNVQGLTALKKLYCHNNQFTALNVQGLTALEELYCYNNQLTALNVQGLTALKKLYCHNNQLTELNVQGLTTLQTLNCWGNQFTSLNVQGCTALKDLRCWGNQLTALNVQGLTTLQTLNCWGNQLTELNVQGCTALQSLVCGSNQLTELNVQGLTALRTLHCYNNKLTAQAFTKLFDDLPARQDSDKGECILYTEESGLSEGNHTDFSTPEALKTAFNNAKNNKKWKMYKWNGSWLGVEI
>NZ_CP048020.1|WP_162663444.1|1334152_1335046_+|hypothetical-protein
MTTANRKYKDSVFVDLFSEDEKAKENFLSLYNALHGTNLQLSCPVENIRLDNIMYMNIINDVSCLVDNKIIVLAEHQSTINENMPLRFLQYIARLYEKLQAPADRYLRKLSKIPTPEFYVFYNGIEDYPETTVLKLSDAFITKPEQMPLDLEVKVYNINKSKGAEVLSHCKTLDEYSLFIEEVRIQTQLDPENGFTNAVKICIEKGILKEYLQRKSREVINMLIAEYDYDTDIAVQREEAGKIAFAKGISQGLSQGLSQGSRQKALETARLMKQANCEIPFIEKMTGLSKAEVEAIK
>NZ_CP048020.1|WP_162663445.1|1335083_1335632_+|hypothetical-protein
MKKNYVKTALCVPVFLWIMGASVLFAQEVNEEPAEQKDVLHWSVGLSAEGNMNMPKGYALGAGLYGLFVLPDWVKTGRFSAGAKLLYSTGFKRYSLLDTAVLFRWNFYDFAKFKTCDSGFFVQAEGGVSLGWNGKSAKPFVFGLGEGTFGYRFAVKTFFIEPYIRGGYPIIWAAGVSGGFRI
>NZ_CP048020.1|WP_162663446.1|1335628_1337314_+|leucine-rich-repeat-domain-containing-protein
MKKIVLVLAVLLVSVSACKNPFLKEMLVEEEKGESSAVPKHTVTFSVEGTGGTLKVKADGVEETAKSPISIEQGKKVTFTAEPAAGYMIKEWKVDGIVVTDNTENSYIHTVTKAVDVKVSFDAPFVEGGASLILSPDKLDIKVKVTTADSAPITVEGCEETELTSGAKTVLHAKGTRVILKGKIIKLGCDNNQLTALNVQGLTALQYLNCGYNRLTALNAQGLTALQELSCYSNQLTALNMQGLTALKELYCYNNQLTALNVQGLTALQRLHCYNNQLTALNMQGLTALQTLYCPDNQLTALNVQGLTALQTLYCYNNQLTALNVQGCIALHTLTCSGNQLTALNVQGLTALQKLHCYNNQLTALNAQGCTALRWLVCTDNQLTTLNVQGCTALQELRCYNNQLTALNVQGCTALQELSCGYNQLTTLNMQGLTALKELYCYNNQLTALNVQGCTALKGLSCGYNQLTTLNVQGLTALRTLHCYNNKLTAQAFTKLFDDLPARQDSDKGECILYTEESGLSEGNHTDFSTPEALKTAFNNAKNNKKWKMYKWNGSWSWVEI
>NZ_CP048020.1|WP_162663447.1|1337612_1339052_-|C69-family-dipeptidase
MKNTHHQSCTTVLVGKNASVDGSIMIARNEDFHEAISVKLFTVMPASEIKNRTYTSKNTGVTVALPEKALRCTSTPQAFQLLKGDEGEYGEAGINEKNIAVSSTESVYGNPRVLAFDPLVPDGIGEDAIHSIVAPFINSARGGVAFLGKLIAQYGSAEGNGILFADADEAWYMEIPCGHYWVAQRIPDDCYAVAPNQVCIETIDFSNERDFMWADGIQAFADAHKLNPDREGFNFRHIFGTSTEKDRVYNTPRAWFAQKYLNPEIEQSPVSNDIPFIRKANRLISVEDVQYILSSHYNETVYDPLGKAGTDYEKTRFRGISLSRTAESHILQLRPGVPEGIAAIQWLAFGTTAFTPYVPFFTNINDTPKIYKKKTATVSLENAYWLFKILGFLTESRYPTSRDANTTYLNEMQTYGFKRVYEVTEAGKALTGEKLTEFLTAENEKTAAYVIKKTKDLIAQLMLESFNYSKLSFKMDKNL
>NZ_CP048020.1|WP_162663448.1|1340584_1341145_-|antiterminator-LoaP
MDYYAVQVKTGKEPELLKIIRKLNEENHEIEAYFPRRVLYIKKKGIRHKVDAPVFPGYIFLEIDDLSLPLCWRLRKTPNFYHFLPNNQNPLPLADNDLSLLRHFLSFGEITAPSKVFFDANARICVIEGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEPAASGSYKLEGRNDSSK

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Crispr_ID: NZ_CP048020_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048020_2

1336202-1337065

Orphan

Consensus_repeat	Method
AATCAGCTNACCGCACTTAATGTGCAGGGCTNNACCGCTTTGCAA	CRT

13 spacers

The CRISPR arrays of NZ_CP048020_2

>merge|NZ_CP048020|2|1336202-1337065|CRT
AATCAGCTCACCGCACTTAATGTACAGGGCTTAACCGCTTTGCAATATCTGAACTGCGGCTACAATCGGCTTACCGCTCTTAATGCGCAGGGCTTAACCGCTTTGCAAGAGCTGTCCTGCTACAGCAATCAGCTGACCGCACTTAATATGCAGGGCTTAACCGCTTTGAAAGAGCTGTACTGCTATAACAATCAGCTTACCGCACTTAATGTGCAGGGCTTAACCGCTTTGCAAAGGCTGCACTGCTATAACAATCAGCTTACCGCACTTAATATGCAGGGCTTAACCGCTTTGCAAACGCTGTACTGTCCGGACAATCAGCTGACCGCTCTTAATGTGCAGGGCTTAACCGCTTTGCAAACGCTGTACTGCTATAACAATCAGCTTACCGCACTTAATGTGCAGGGTTGCATCGCTCTGCACACGCTGACATGCTCTGGTAATCAGCTTACCGCACTTAATGTGCAGGGCTTAACCGCTTTGCAAAAGCTGCACTGCTATAACAATCAACTCACCGCACTTAATGCGCAGGGTTGTACCGCTTTGAGATGGCTGGTCTGCACTGACAATCAGCTTACCACACTTAATGTGCAGGGCTGTACCGCTTTGCAAGAGCTGAGGTGCTATAACAATCAGCTTACCGCACTTAATGTGCAGGGCTGTACCGCTTTGCAAGAGCTGAGCTGTGGCTACAATCAACTCACTACACTTAATATGCAGGGCTTAACCGCTTTGAAAGAGCTGTACTGCTATAACAATCAGCTTACCGCACTTAATGTGCAGGGCTGTACCGCTTTGAAAGGGCTGAGCTGCGGCTACAATCAACTCACTACACTTAATGTGCAAGGCTTAACTGCTTTGCGA

>NZ_CP048020|2|1|1336202-1337065|CRT
AATCAGCTCACCGCACTTAATGTACAGGGCTTAACCGCTTTGCAA	TATCTGAACTGCGGCTAC
AATCGGCTTACCGCTCTTAATGCGCAGGGCTTAACCGCTTTGCAA	GAGCTGTCCTGCTACAGC
AATCAGCTGACCGCACTTAATATGCAGGGCTTAACCGCTTTGAAA	GAGCTGTACTGCTATAAC
AATCAGCTTACCGCACTTAATGTGCAGGGCTTAACCGCTTTGCAA	AGGCTGCACTGCTATAAC
AATCAGCTTACCGCACTTAATATGCAGGGCTTAACCGCTTTGCAA	ACGCTGTACTGTCCGGAC
AATCAGCTGACCGCTCTTAATGTGCAGGGCTTAACCGCTTTGCAA	ACGCTGTACTGCTATAAC
AATCAGCTTACCGCACTTAATGTGCAGGGTTGCATCGCTCTGCAC	ACGCTGACATGCTCTGGT
AATCAGCTTACCGCACTTAATGTGCAGGGCTTAACCGCTTTGCAA	AAGCTGCACTGCTATAAC
AATCAACTCACCGCACTTAATGCGCAGGGTTGTACCGCTTTGAGA	TGGCTGGTCTGCACTGAC
AATCAGCTTACCACACTTAATGTGCAGGGCTGTACCGCTTTGCAA	GAGCTGAGGTGCTATAAC
AATCAGCTTACCGCACTTAATGTGCAGGGCTGTACCGCTTTGCAA	GAGCTGAGCTGTGGCTAC
AATCAACTCACTACACTTAATATGCAGGGCTTAACCGCTTTGAAA	GAGCTGTACTGCTATAAC
AATCAGCTTACCGCACTTAATGTGCAGGGCTGTACCGCTTTGAAA	GGGCTGAGCTGCGGCTAC
AATCAACTCACTACACTTAATGTGCAAGGCTTAACTGCTTTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048020.1\|WP_162663440.1\|1330274_1330505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664775.1\|1332721_1333903_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP048020.1\|WP_162663450.1\|1342089_1342902_+\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_CP048020.1\|WP_162663453.1\|1345202_1346033_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|211337
NZ_CP048020.1\|WP_162663449.1\|1341248_1342103_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_CP048020.1\|WP_162663437.1\|1319723_1322606_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP048020.1\|WP_162663441.1\|1330862_1331654_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048020.1\|WP_162663452.1\|1344334_1345216_+\|DUF2225-domain-containing-protein	unknown	unknown	gnl\|CDD\|224569
NZ_CP048020.1\|WP_162663448.1\|1340584_1341145_-\|antiterminator-LoaP	unknown	unknown	gnl\|CDD\|223328
NZ_CP048020.1\|WP_162663447.1\|1337612_1339052_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP048020.1\|WP_162663455.1\|1347522_1348902_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240549
NZ_CP048020.1\|WP_162663451.1\|1343877_1344249_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP048020.1\|WP_162663445.1\|1335083_1335632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162663444.1\|1334152_1335046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP048020.1\|WP_162663454.1\|1346198_1347434_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|349766
NZ_CP048020.1\|WP_016523627.1\|1348958_1349441_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP048020.1\|WP_162663442.1\|1331720_1332011_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP048020.1\|WP_162663443.1\|1332109_1332649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162663438.1\|1322627_1325930_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|224369
NZ_CP048020.1\|WP_162663439.1\|1326280_1329904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379079

Protein	Function_ID	Function_description	E-value
NZ_CP048020.1\|WP_162663453.1\|1345202_1346033_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	1.17825e-114
NZ_CP048020.1\|WP_162664775.1\|1332721_1333903_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	9.79873e-32
NZ_CP048020.1\|WP_162663455.1\|1347522_1348902_+\|MATE-family-efflux-transporter	gnl\|CDD\|240549	cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.19573e-175
NZ_CP048020.1\|WP_162663437.1\|1319723_1322606_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP048020.1\|WP_162663441.1\|1330862_1331654_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.17814e-41
NZ_CP048020.1\|WP_162663452.1\|1344334_1345216_+\|DUF2225-domain-containing-protein	gnl\|CDD\|224569	COG1655, COG1655, Uncharacterized protein conserved in bacteria [Function unknown].	9.64789e-84
NZ_CP048020.1\|WP_162663442.1\|1331720_1332011_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.07732e-09
NZ_CP048020.1\|WP_162663448.1\|1340584_1341145_-\|antiterminator-LoaP	gnl\|CDD\|223328	COG0250, NusG, Transcription antiterminator [Transcription].	3.98099e-20
NZ_CP048020.1\|WP_162663447.1\|1337612_1339052_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	3.3141e-176
NZ_CP048020.1\|WP_162663451.1\|1343877_1344249_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.04256e-40
NZ_CP048020.1\|WP_162663444.1\|1334152_1335046_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	4.84969e-09
NZ_CP048020.1\|WP_162663454.1\|1346198_1347434_+\|GTP-binding-protein	gnl\|CDD\|349766	cd03112, CobW-like, cobalamin synthesis protein CobW. The function of this protein family is unknown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterize it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.	6.17127e-77
NZ_CP048020.1\|WP_016523627.1\|1348958_1349441_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.39097e-31
NZ_CP048020.1\|WP_162663449.1\|1341248_1342103_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	2.92645e-114
NZ_CP048020.1\|WP_162663450.1\|1342089_1342902_+\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.05432e-77
NZ_CP048020.1\|WP_162663438.1\|1322627_1325930_+\|LPS-assembly-protein-LptD	gnl\|CDD\|224369	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane].	4.074e-24
NZ_CP048020.1\|WP_162663439.1\|1326280_1329904_+\|hypothetical-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	1.51189e-08

>NZ_CP048020.1|WP_162663445.1|1335083_1335632_+|hypothetical-protein
MKKNYVKTALCVPVFLWIMGASVLFAQEVNEEPAEQKDVLHWSVGLSAEGNMNMPKGYALGAGLYGLFVLPDWVKTGRFSAGAKLLYSTGFKRYSLLDTAVLFRWNFYDFAKFKTCDSGFFVQAEGGVSLGWNGKSAKPFVFGLGEGTFGYRFAVKTFFIEPYIRGGYPIIWAAGVSGGFRI
>NZ_CP048020.1|WP_162663444.1|1334152_1335046_+|hypothetical-protein
MTTANRKYKDSVFVDLFSEDEKAKENFLSLYNALHGTNLQLSCPVENIRLDNIMYMNIINDVSCLVDNKIIVLAEHQSTINENMPLRFLQYIARLYEKLQAPADRYLRKLSKIPTPEFYVFYNGIEDYPETTVLKLSDAFITKPEQMPLDLEVKVYNINKSKGAEVLSHCKTLDEYSLFIEEVRIQTQLDPENGFTNAVKICIEKGILKEYLQRKSREVINMLIAEYDYDTDIAVQREEAGKIAFAKGISQGLSQGLSQGSRQKALETARLMKQANCEIPFIEKMTGLSKAEVEAIK
>NZ_CP048020.1|WP_162664775.1|1332721_1333903_+|leucine-rich-repeat-domain-containing-protein
MLVEEGKGNTVPEKPQAPPFVEGGASLILSPNKLVISVKAVTSDGSAVAVEGCTETELTSGTVTVLHAKGTRVILKGKITALGCDNNQLTALNVQGLTALQGLDCHINQLTALNVQGLTALQGLDCLGNQLTELNVQGLTALQYLSCAGNRLTALNVQGLTALKKLYCHNNQFTALNVQGLTALEELYCYNNQLTALNVQGLTALKKLYCHNNQLTELNVQGLTTLQTLNCWGNQFTSLNVQGCTALKDLRCWGNQLTALNVQGLTTLQTLNCWGNQLTELNVQGCTALQSLVCGSNQLTELNVQGLTALRTLHCYNNKLTAQAFTKLFDDLPARQDSDKGECILYTEESGLSEGNHTDFSTPEALKTAFNNAKNNKKWKMYKWNGSWLGVEI
>NZ_CP048020.1|WP_162663443.1|1332109_1332649_+|hypothetical-protein
MKKNCVKAALCALVFLSGSVLFAQEVEDEPKREKDGLHWSLGISAEGNMNVPKGSALGAGLYGMFVLPNWVKTGRFSAGVKLLYSTGFKSYSLLDTAVLFRWNFYDFAKFKTCDSGFFVQAEGGVSLGWNGKTAKPFVFGLGEGTFGYRFAVKTFFIEPYIRGGYPVIWAAGVSGGFRI
>NZ_CP048020.1|WP_162663442.1|1331720_1332011_-|transposase
MGRVYKNYTKDLKEQACKLVVEKNIPVRIVAEKLSVRVQLLYKWLNQYESYGQEAFVGSGRVRSADAQLKKLQKENEYLKLENEVLKKAAAYFAEK
>NZ_CP048020.1|WP_162663441.1|1330862_1331654_-|IS3-family-transposase
MAYRVAATIGKQRSRKKKKQLEQRIISTFAKHKGNYGRIRIKKALEREHIKVSEWKIARIMKENGLIAKGGRKKGRGKRSKMVQQEKIIKQNVIKDKFAVKEVNKLWSSDISEFKITGGKVYVCGIIDVASRVIVGWSIQLHMREVIVHQALKMACGRHVNVPAERYMHTDGGSQFCSKKTTELIEKAGFIKSMSRPGVPQDNQPIESFWKTMKREMPSIRHMKFEQAKATIVEYIELYYNSERLHSSINYRIPNEAYQQLSI
>NZ_CP048020.1|WP_162663440.1|1330274_1330505_+|hypothetical-protein
MPTMTMTHKAYRELEQAAQMSGATKDTVLENALSRYLAELQEDAEDAALAEKAWFDFEKSGEPAIPAEVLYKELGL
>NZ_CP048020.1|WP_162663439.1|1326280_1329904_+|hypothetical-protein
MRKAFIVLTGILFTLLFATCKQFTADIDDYLSRWSSEAFIQSSTIDKKTYNDGSSIPSVASADKVTITLKVQNPKSFRFVIPSASETRKIVEFAHFAGTKPVAGTDYELIQRSADTLKLVYKKSFLENAEWGEKDISSTITLYANDGRPPFKQTFTIPLKVNTPPPKPGYAVAKTTGTTAYYVLCITVPDMDKTAGGGLLHKDLACIEVNGTPYTFSVDEGQHKFTKPEGPVFITHSDVEKLSNQPNDAIPTDSSWVLYYKTDVKVESGAAKKDYTIKLIDEKGLASDIVNASTKPNKPEAEIVRITKGEKIPGSGSGSSDTDPIIIGTDGDKAEIRIASATANTTVHCTRTDTGTSIPYDGNPVTVPLPLNGGNEKQYKLEYYTDGTGFAATPVKTIYYKVVKAHTVTYRVEIVDEVAGGTIETGSSGQKTSGTVSVAHGNSVTFTAKSDTNWNVAGWKKNNDEVNGTNGAYTLSNVTADKTVTVKFYQSTLKNPATWKDLARAVKSAPDNATLTIDGEIKATSDAGNNGEIVINKNLTIKRANGASSAVIDANKSTGSKPKHRIFKVESGKTLTLENLTLKNGKAEGSDGPGDGGAIYVHGASVKITGCTLTDNTANKNGGAVYATKRGDNAAHVTISGGSINGNTVTINSGFGGGIYINDGCELTLKDNVTVKDNKAARGGGVRANKSTVTMNGCTFEGNKSTHGDASNGCGGVYVNGGTVTMQSCTLKSNDGKVRAGGLLVEGGAKVTMDGCTITGNTATTGGGIYITGGSSIVTLNNGVQIKDNTATTGGGVYVQDGTFKMSGSAIVTPSTGSDQYTPGKNDVYLKTGQAITVDGTLSNNPAARITPEEYKENVPVLRGGSGVTLKNETGKFIVPPQKVTVESEDWNVFWYIADNGNLKAEVENSSLLQEVISSRPNNTPFIIKLGNIDDLQTVEIPGHKKIMLKADRDVTLTCPNNGHDHYKHLQVQRDATLILEGKIKLQGADYGDKDHYALCVEKDGNAEIKDGVTITGFKNTGRGTVFVDGNLTMSGGTITGNKARNKGDGTAYDDGKGGGVYICPDRSFTMTGGTISDNEAGNGGGVYVSADGPQYIYGNFIMKGGTIKNNKATVSSVYSYIEYTGHGGGVCTQGNFEMRGGTITGNQSERNCKAVQLEHDFYWYGGDIKDNGGANQTVSGIRAVADRNGGLYYFHNSTKNPHKEPS
>NZ_CP048020.1|WP_162663438.1|1322627_1325930_+|LPS-assembly-protein-LptD
MKKPLVSVFCLFLFILSSPSAQIAKEPKVITINSVRVMEVFKKENKAQYSTKPDKTDKKKDTNSSEDKTESPTEQTAGTENISDTQTSVTTEEAQKAVEEKKDDIIVFTGGVSLSVKDGSTVSTIESDKLVYNRSENTIEAEGNVHYSRKSGGSDGAEEFIGELLLFNIDEMEGIFLDGTIKQAPRKQGQSPFTIQSATVGRDSSGVIGFKDAVLSTNPDPDEEPLWSIRASRIWMLPGNELAFANGYFSIGIVPILYLPFFYHPADEMLFHPVFGFRNREGYFLQTTTYLLGRKPLDTDSKKSGSFSNFMKSDRLKKQERIGLFFKNMEEDETDISSAYIKLIADTYSQLGGLVGIEGKTIPKNTPIRQLDFSVFFGMSRTLFPLNRIGTGGISHTTYDTHGKRHYNKGFFLGMQLPFRYRAHINFGISQAPFQLSISVPLISDPYFKKDFFDRSEDMNWFNYLLNKEKLAKGADSIGRESSYSWKIDGSIRPSFRKISPWISSFNLDTASLTVDFSSKTKQSVTAEELYAPQRDFFYPSLFKPEGKISIAGTLLSNTMFNRTPVKKIPDVEGIVHPFITQDKAPSDSESETKTANSKRDFFDTFIPLFKPVYDKEFDHSIAYSLSYSGDFSALQETTFASSQWNNPEDIRWKDYESRYYQLKGSAGLKGSLSYSQNLISLSSNLVISGNYQRHPWTRDVSKKPILELNNFKANVYTLKNENSVTVNPFVYTDLFKPVSFSWNITEILAKNTFIGTYSNPKWETQRVKWNKDFITAHTGTAVFGVILAEKYTQKITFSMNLPPLLQAYTTSLNVSFPYGTFAASTKLSEKEHSAKKWAWEPFKADLTWVLPYDIRIAQTYIYNIQDKSNERLHITFGWKYISAFYTQSREVPQKLVPGSGWVLDGTEKRFIPFALGFSFSNTSNPFTIYAWKNRIKIQLGLSSTLQFNLVRITDSYFTFAPKIIFNIHEFWDFSFGSSSRNDVIARYFQKALNLPVVIPGNTNILTDLAQSFNFWNRSKREASGFKLQSLDIGFTHYLKDWKLKLNCEIKPQLKNEGSRKYYEFSPTITFAVEWNPIGDIKVEAKKKEGKFSVERGELQ
>NZ_CP048020.1|WP_162663437.1|1319723_1322606_+|excinuclease-ABC-subunit-UvrA
MQENETQNSAHVNKLIVKGAREHNLKNIDVELPRDKLIVVSGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLDRMDKPDVDYIEGLSPAISIEQKTTHRNPRSTVGTVTEIYDYYRLLYARTGHPHCPQCGKEIQEQTVDQIIDAIMSWEDRTRVQILAPIIKGKKGEHQKIIEDAQKAGFLRARIDGLTVNLEDGVKLDKQKKHTIEIIVDRIQLSADARKRLSESVETALESSGGTLIALRQKTADDPITEVFFSQKNACPDCGISMPDLQPRLFSFNNPYGACPECTGLGLKQHFDFKLIVPDTSLSFNEGAFLPYNPDSAWNRARFEALARRFGFSLDTPVKELSKKELKIIMDGSGLEPIEFVYERQDGSGKSKYRRPWLGIYADMQRRYNEAYSAAQRESYEKYMAVTTCEHCGGKRLKPEALAVTVGGKNIYELSSLSVGDSITFLERLKLTATEKTIAHQILKEITSRLQFMKNVGLDYITLERKAATLSGGESQRIRLATQIGSSLIGVLYILDEPSIGLHQRDNQRLIDTLLYLRNLGNTLIVVEHDEQTLRVADYIVDLGPGAGVHGGAVVAAGTPDEVMQVKESLTGQYLAGTLCMELPAERRKGNGSFLTLQGVTEHNLKNVSVSIPLGAFTCITGVSGSGKSTLLSDVLYPAVSNALMRSGLPEGAYKKIKGLEHIDKVINIDQSPIGRTPRSNPATYVEVFTAIRDLFANLPEAKARGYKPGRFSFNVRGGRCEHCQGDGAIAIEMNFLPDVYITCDVCRGKRFNKETLDVRYKGKNISDVLEMTIEEAAEFFAPVPQIARKMQTLLSVGLGYIRLGQSALTLSGGEAQRVKLAHELSKRSTGKTLYILDEPTTGLHFADVKQLMEVIQRLVDQGNTALMIEHNLDVILQADHIIDLGPEGGSRGGTVIAEGTPEEVAEVKNSYTGFYIKEMLDRQRQKSS
>NZ_CP048020.1|WP_162663447.1|1337612_1339052_-|C69-family-dipeptidase
MKNTHHQSCTTVLVGKNASVDGSIMIARNEDFHEAISVKLFTVMPASEIKNRTYTSKNTGVTVALPEKALRCTSTPQAFQLLKGDEGEYGEAGINEKNIAVSSTESVYGNPRVLAFDPLVPDGIGEDAIHSIVAPFINSARGGVAFLGKLIAQYGSAEGNGILFADADEAWYMEIPCGHYWVAQRIPDDCYAVAPNQVCIETIDFSNERDFMWADGIQAFADAHKLNPDREGFNFRHIFGTSTEKDRVYNTPRAWFAQKYLNPEIEQSPVSNDIPFIRKANRLISVEDVQYILSSHYNETVYDPLGKAGTDYEKTRFRGISLSRTAESHILQLRPGVPEGIAAIQWLAFGTTAFTPYVPFFTNINDTPKIYKKKTATVSLENAYWLFKILGFLTESRYPTSRDANTTYLNEMQTYGFKRVYEVTEAGKALTGEKLTEFLTAENEKTAAYVIKKTKDLIAQLMLESFNYSKLSFKMDKNL
>NZ_CP048020.1|WP_162663448.1|1340584_1341145_-|antiterminator-LoaP
MDYYAVQVKTGKEPELLKIIRKLNEENHEIEAYFPRRVLYIKKKGIRHKVDAPVFPGYIFLEIDDLSLPLCWRLRKTPNFYHFLPNNQNPLPLADNDLSLLRHFLSFGEITAPSKVFFDANARICVIEGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEPAASGSYKLEGRNDSSK
>NZ_CP048020.1|WP_162663449.1|1341248_1342103_+|dihydropteroate-synthase
MRLQLDCGKGHIIETDLPAFIMGIVNTTPDSFYEPSRSTSLEKSLIRALALEAEGADIIDIGGESTRPGASYISEEEELERVIPLIEAVRGRSTVAISVDTRKAAVMKAAFKAGATLCNDISALIDDPALGTLIAEEAGAVVLMHKRGTPPTMQQNVPQYRNVVTEVRDYLEARVAHALNCGIAHERIIIDYGIGFGKTAEDNYRLIAASAYFTGLGYPLLVGLSRKSFIGYVTGEPPEKRLAGTLAATMYAVQQGASIVRAHDVAETRELLLVLKELQKYGTT
>NZ_CP048020.1|WP_162663450.1|1342089_1342902_+|TIGR00159-family-protein
MELLRDMLSFYLSYIGPALDILLLAFLMYKSYQILIKTQAAQLGKGALLMLLIYAVAFLLHLTTLLWILNMLATGVVIGAAIIFQPELRRMFLTMGQNDWFRRSRSQHSHIDYVLTAAERLSAERRGMLVIFLRQNNLKEIIENPSATRINAEISSNLLVTIFEFDTPLHDGAVVIDNGRIIAAGCYLPLTKQEDINKSFGTRHRAALGIAEETDAVVLIVSEESGAISLAYDSKLYYDLTTDNIESELTYLLKVKAKTQNIETSEGSAS
>NZ_CP048020.1|WP_162663451.1|1343877_1344249_+|holo-[acyl-carrier-protein]-synthase
MIVGFGIDAVAISRIRRWMEDEGLLARFFHPQELRETKSRGLTAAYSLAARFAAKEAYGKALGTGLKGITLKNILVTNNPNGKPELTLLGDAATPFKRICGTRIHLSLTHESNMAIAAVILES
>NZ_CP048020.1|WP_162663452.1|1344334_1345216_+|DUF2225-domain-containing-protein
MKREEDQQSKKEVAISYYSKDQIECPVCGAKFKREEMYSGGGRVIAGDLTEELRRLYEPSAKYGEVYPLIYSMTVCPQCLYTGFTQDFRVIEKPIAERLLEAMNERYSAVKGLFGYIDFNTARTLHAGAASYYLALLCYDHFDSKYSPTIKQAICALRAAWLFSTLGEKEPEENYTYISKLFYQKALFLYRRALELETTGKEMIAGLKSFGPDVDKNYGYDGVIYLGALLEYRYGQRQDAETRLKRLEMHKIALAKLFGLGKSSKAKPGPILEHARTLYDALKLELKETDDDD
>NZ_CP048020.1|WP_162663453.1|1345202_1346033_+|tRNA-pseudouridine(38-40)-synthase-TruA
MTTTDPDPAIPQRNILLRISYDGTHFHGWQKQLRHGQESFRTVQGEIEQALALLHKHPVELFGSGRTDAGVHACGQAAHFFTDIARIKPESFIPALNSALPKDVRIMEAVHVSDNLHARFSARSRTYRYFIHCGKTAFAHQLPYCWHIRREPNINLLNKMASVLSGELDCTTFSAAGDQSKSKSRYIYSAHFFTDREFLVFEISANAFLWRMVRSITGTLLHYEQQNGTKEDFEAVLRSKDRRNAGETAPPQGLFLWSIEYPQNLLTPLAEAVIIG
>NZ_CP048020.1|WP_162663454.1|1346198_1347434_+|GTP-binding-protein
MKKPLVPITLLCGYLGAGKTTLMNMILANQKGYKVAVIVNDIGEINVDASLIEKDANITDKSSLVPLTNGCICCTLKTDLVMQIENLIASGKYDYLLIESSGVCEPMPIAQAIETIENGYLDNVVSVVDAKRLVDEFSEGAQLLKKDMGEEDIESLLVQQIEFCSTLIINKKDLVTEDQMKKVRAVVTKLQPHVKVIETARCQVPLEDLLATKRFDFEKVFESAGWVAELEKRAEEDDDDEECDHDHEHCDHDHHDEHEHHGHEHHEHDEHGEHGHHHHHHEHKHEGADEDEYGIGSFVYYRRRPFNRGKLEKYAGVWPRNIIRCKGVVWFSDEQDMAYVFETSGRQIQAGASGRWLATASKREQEKILAREPRMREEWDEKVGDRMIKLCIIGQKLDKKKICADLDALLD
>NZ_CP048020.1|WP_162663455.1|1347522_1348902_+|MATE-family-efflux-transporter
MEEIKARPIGSAENKMGVMPIMKLVLNMSLPMMFSMFIMALYNIVDSIFVAKINEDALTAVSLAFPIQNLMISFAVGTGVGVNALLSKRLGQRNQADVNKTAMNAVFLAACNFIVFFIAGILLVRPYLASQGVDAGIVSYGEAYLDIVLRMSFALFFGITFDRLLQSTGLTLYTMYSQLSGAIFNVIFDPLLIFGIGPFPKMGIRGAALATVLGQILGLCVSVFFNLTKNHEIQFKLKNLLPEPRIVAEIYKVGVPSILLSSITSITTYFLNIILSAFSSTAIAVYGVYFKLNSFIFMPVFGLNNGMVPIIAYNYGARNRKRITATIRNGLFLAMGIMLFGMALFELFPAQLLGLFDASPAMLAIGVPAIRIIACSFLGAALGITFSSVFQAFGNAVYSMIATFVRQIVALLPAAYLLSMSGDVNAIWWSYLIAEVVSIIACIFFMHRIYKEKIEPLPV
>NZ_CP048020.1|WP_016523627.1|1348958_1349441_+|Lrp/AsnC-family-transcriptional-regulator
MQEIIDLLENDARLSPQDIAAMTGKSEEEVRAAIKKLEDEGIILKYAAVINRERLASSDTVSAMIEIQVAPAREHGFDRIAERIYRYPQVKTVQLMSGGYDLHVLVEGKDLKEVAFFVSEKLASLEGVISTRTHFVLKTYKENGTYYIDPKKDPREEITA

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Crispr_ID: NZ_CP048020_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048020_3

2685349-2685430

Orphan

Consensus_repeat	Method
CGGTTCCGGCGGTGTCGGTGTTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048020_3

>merge|NZ_CP048020|3|2685349-2685430|CRISPRCasFinder
CGGTTCCGGCGGTGTCGGTGTTCCGGTTCCGTCGTCTTTTGGCTCCGGCGGTGTCGGCGGTTCCGGCGGTGTCGGTGTTCCG

>NZ_CP048020|3|2|2685349-2685430|CRISPRCasFinder
CGGTTCCGGCGGTGTCGGTGTTCCG	GTTCCGTCGTCTTTTGGCTCCGGCGGTGTCGG
CGGTTCCGGCGGTGTCGGTGTTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048020.1\|WP_162664453.1\|2687144_2687633_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP048020.1\|WP_162664457.1\|2690059_2690785_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664859.1\|2687640_2688126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664445.1\|2683345_2683867_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664441.1\|2679310_2679772_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664456.1\|2689304_2689832_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664448.1\|2684616_2684952_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313803
NZ_CP048020.1\|WP_162664459.1\|2691135_2691300_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664452.1\|2686453_2687008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377714
NZ_CP048020.1\|WP_162664443.1\|2680100_2682758_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP048020.1\|WP_162664451.1\|2685559_2686429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664442.1\|2679768_2680104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664455.1\|2688608_2689301_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664447.1\|2684260_2684620_-\|minor-capsid-protein	unknown	unknown	gnl\|CDD\|371382
NZ_CP048020.1\|WP_162664440.1\|2678917_2679292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350554
NZ_CP048020.1\|WP_162664458.1\|2690788_2691139_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048020.1\|WP_162664446.1\|2683893_2684283_-\|minor-capsid-protein	unknown	unknown	gnl\|CDD\|372257
NZ_CP048020.1\|WP_162664444.1\|2682757_2683336_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369109
NZ_CP048020.1\|WP_162664454.1\|2688156_2688606_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350620
NZ_CP048020.1\|WP_162664449.1\|2684963_2685302_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP048020.1\|WP_162664453.1\|2687144_2687633_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.43747e-05
NZ_CP048020.1\|WP_162664448.1\|2684616_2684952_-\|hypothetical-protein	gnl\|CDD\|313803	pfam10665, Minor_capsid_1, Minor capsid protein. This is a putative tail-knob or minor capsid protein from bacteriophages.	4.74998e-20
NZ_CP048020.1\|WP_162664447.1\|2684260_2684620_-\|minor-capsid-protein	gnl\|CDD\|371382	pfam11114, Minor_capsid_2, Minor capsid protein. Most of the members of this family are annotated as being minor capsid proteins. The genomes carrying the genes usually have three similar proteins adjacent to each other, hence this one being named as No.2.	1.03014e-06
NZ_CP048020.1\|WP_162664440.1\|2678917_2679292_-\|hypothetical-protein	gnl\|CDD\|350554	cd18479, BACK_KBTBD2, BACK (BTB and C-terminal Kelch) domain found in Kelch repeat and BTB domain-containing protein 2 (KBTBD2). KBTBD2, also called BTB and kelch domain-containing protein 1 (BKLHD1), plays an essential role in the regulating the insulin-signaling pathway. It is a BTB-Kelch family substrate recognition subunit of the Cullin-3-based E3 ubiquitin ligase, which targets p85alpha, the regulatory subunit of the phosphoinositol-3-kinase (PI3K) heterodimer, causing p85alpha ubiquitination and proteasome-mediated degradation.	0.00774054
NZ_CP048020.1\|WP_162664444.1\|2682757_2683336_-\|hypothetical-protein	gnl\|CDD\|369109	pfam06854, Phage_Gp15, Bacteriophage Gp15 protein. This family consists of bacteriophage Gp15 proteins and related bacterial sequences. The function of this family is unknown.	9.5403e-30
NZ_CP048020.1\|WP_162664446.1\|2683893_2684283_-\|minor-capsid-protein	gnl\|CDD\|372257	pfam12691, Minor_capsid_3, Minor capsid protein from bacteriophage. This family is from one of three adjacent genes, all of which are involved in formation of the minor phage capsid.	4.46161e-10
NZ_CP048020.1\|WP_162664452.1\|2686453_2687008_-\|hypothetical-protein	gnl\|CDD\|377714	pfam06810, Phage_GP20, Phage minor structural protein GP20. This family consists of several phage minor structural protein GP20 sequences of around 180 residues in length. The function of this family is unknown.	0.000309233
NZ_CP048020.1\|WP_162664443.1\|2680100_2682758_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.01537e-08
NZ_CP048020.1\|WP_162664454.1\|2688156_2688606_-\|M15-family-metallopeptidase	gnl\|CDD\|350620	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase. This L-Ala-D-Glu peptidase family includes L-alanyl-D-glutamate peptidase (bacteriophage T5) (also known as L-alanoyl-D-glutamate endopeptidase), and Ply118 and Ply500 L-Ala-D-Glu peptidase. Bacteriophage endolysin degrades the peptidoglycan of the bacterial host from within, leading to cell lysis and release of progeny virions. The bacteriophage endolysin Ply118 cleaves between L-Ala and D-Glu residues of Listeria cell wall peptidoglycan. This family belongs to the MEROPS peptidase M15 subfamily C.	6.53573e-24

>NZ_CP048020.1|WP_162664449.1|2684963_2685302_-|hypothetical-protein
MTPFDKVTYDFYSDELGRAVIPSAAEFNTYRLKNVLFVKGLYDDGLIVEREADGIVKAICMMIEIDYQAGGNDTVTTSESIGGYSWSGTKKSLEAKKYEWLKLFCHITGGVR
>NZ_CP048020.1|WP_162664448.1|2684616_2684952_-|hypothetical-protein
MIGRHLLIHSCTVKEVSGLNRDGGAEYAESILLEHVRIVPAYSVRRGAVGKEKDDKLLLFIDGENSAPRGFIPKTDSAVFWQGQQYTVRAVTPCYTAGSGSLVHHWEVSLV
>NZ_CP048020.1|WP_162664447.1|2684260_2684620_-|minor-capsid-protein
MTIEFKVKRLDQDGKIIKANVVQRIESVQGYLDYLVVKDSNYFCPLETSVLQKSAIINTTMGSGLLIWQTPYARAQYYGEKFDHSKQRNPNACAKWFEAAKARWHSKWVRFVNEMLKNS
>NZ_CP048020.1|WP_162664446.1|2683893_2684283_-|minor-capsid-protein
MKCLKIAERVNQWVEKKGLIPFTVYNDLIPYADKDGAALRHDPAPAAQQRYTDGSRFVRWNLTYYIRCKDAEKAREYAYTITSALDGVEIEGEDVDITCEALTLPQFIGKDDKDFTTYSAAIACSYLEE
>NZ_CP048020.1|WP_162664445.1|2683345_2683867_-|hypothetical-protein
MAKKKLVRKTHVVPFVNVGTDSAPDWRRIEKSKTFTLSTNPQVKTYDYISSDIPEEEITGYQPSLAQSLTMWKNSDDYEEFFGMLFKLPTGENAHRDVMVAFYQEKGKNGSDDVYKAWKVDALVKISQMDTVDESINFDLSFNKIVIGALSFASGKPEFIKGEWTGDTFTPAS
>NZ_CP048020.1|WP_162664444.1|2682757_2683336_-|hypothetical-protein
MIDLTKAKLPEAIEVSGAFYRIHTDFRYFIRLEQVLNEKGMKPNDCDFMFIQELPPDKIAGVKALVAFMNPPHTLPRKSKREDAGAPVLDYTLDADLIYAAFMQQYHIDLSTEPLHWHQFSALLAGLRDTKLNDVIGFRLWENTSGKKDEYTRAMQKLHDAWEIEVKDNAEDAALAEFEARLNGLQKKRRKK
>NZ_CP048020.1|WP_162664443.1|2680100_2682758_-|hypothetical-protein
MPDGSVEIDGKLTTEGVEKGVKKINQEINKIEKEAEKTTKKTAGNFKKLDTVMQEASSTASGFANKISNAASSNGLYVAAAVGAIAATKKIGEVMRECTDAYKVQEKAEKALEVAARNNPYLDGQAVAGLKAFASELQSVSEIGDEASIKLMAQLAAAGRTESQIRDIMKAAADYAAGTGTDIQSAVQTLNATYSGSAGLLGKQITGLKGLTEEQLKNGEAVKVVAEKYKGLAENLADVKVQAEGAKGDFKEMVGALIAPAVDLWDRFWKGFYEKGAAAMKWLKKRLDFINTDNDAFLHNMLERMDYDPIKEAEKQRKRDMYKPDPNDALDSGAAAYKAVEKWYKKATPTKRLEDSSIEELEKIIEQLQLKIELTGKLGEKEQELLEKSTALLAQKEKVEKDRIATENAAAKTAEDQAKAQKTADDYAEASNKQLENNIKALELEAAAKGENVKAQDLFNVYLKSYIDLLTNTEGKIKEGYPVAQKRLEQVKKAKAAVDAQTDAEEKLKAAIETTHAVMNTIKDIKIAPTPLEGFDEQLAQYKTLRDKIKGLDDATIEKAQEGNDTKYTKEQLLEQLKEKEIALEKEKIRTIAGIRKSEFDEYKAQQEQRLKLKEAIDASEVLSKEEKEKAKDEIDEKYAQAKIERARTVMEQVNQYTQQALQVAQDAAKLMLESIQNEQKLELAALDEKYEKGEMSETEYTAKMKEIKKKAAQEEYKVKMFQWTASMLAAVANIAEGVSKTIALGFPIGLATAPIVAAAGAVQIASIVASKPIPPNFAHGGIVGGSSYYGDNINANLDSGEIVTNFPQQKRLWAMLNGDAQYKPSFPITVNNTQSNRVSAYAQERNGEVFIEIIDKHINKGFADGTYDKGFAGMQGRNAGVNIQ
>NZ_CP048020.1|WP_162664442.1|2679768_2680104_-|hypothetical-protein
MITFPFSITKLYGVQTGYVDNAVKQQYDSGRVVAWQKNTVVKRKYAVSCSVTRAQAQIFDEWYTKTLGGNGQPFSAPNLEGSGVQTVYRMDSPPTIEGQAYKTISMEWIEV
>NZ_CP048020.1|WP_162664441.1|2679310_2679772_-|hypothetical-protein
MTKAELFQSLSQGGAYALPYLITIHHPNVGTAHYINNNEDVTYHGVTYEASAFKYTRPKTVGGVLQNGTLEITGVKTCALDMVEASDELFTVDVIGVLDAAGDITPIRYFHHQYGTVTTDNGLKVVISFANDDRLEMNFPPFIFDADNNRGNA
>NZ_CP048020.1|WP_162664440.1|2678917_2679292_-|hypothetical-protein
MIEVNDLIGASYKDHGRDKSGYDCYGLCIEVARRAGYRLDDVYYEDHSVHLSHLYAPTLNVHKIDTPKEGALLEMETHTESGTDLHLGVCLNETEFIHMTRLGCRVNRIGTFKIRGIYGIDTRL
>NZ_CP048020.1|WP_162664451.1|2685559_2686429_-|hypothetical-protein
MANTILTFKKYIDQLDDVYKLSSKTAVLETNPALITQGANAGEFVIPKLDMDGLGDYSRNDGYVSGGVDLKNETVKCDFDRGRRFTVDAMDNEETAGVAFGRLAAEFIRTKVTPELDAYRFAKYALKAGTKKAAALADGAAVMQAITAAIGTLDDAEVPEEGRYLFLTPAHFNAIHSLDTTKSRELLATFEKRIIKVPQARFYTAIDQLNGKGSGEEKGGYKKNTSAKDVNFMIIHKSALIQFSKHVVVSIFRPEENQLADGWAFNYRSYGIADVYENKKNGIYLHTAA
>NZ_CP048020.1|WP_162664452.1|2686453_2687008_-|hypothetical-protein
MKREFLEGLNLEAAVIDQIMAENGKDIEREKQKTLAAQEEAKATKAQLESANKTIEGFKDYDQTKSDVEKYKAEAETAKKEAAAKIASLERSAQVKDFLSSKKFVNDITRDALAAKLTEQLGSEEAKGKSLDDLFAALTKDQKNILADDTAPAPPVQGSMKGGSHAADERAAARAVMGLPPEKD
>NZ_CP048020.1|WP_162664453.1|2687144_2687633_-|hypothetical-protein
MKRRFLLFVVSVFCCLLFPVAAQERQYTVTETELTQLESISQSLQISKLDLQSQASGLAERLRAQESKAKTLAASLQKAESKAKNLNSQLQAERDALKNLRASYSAYEKEAARQIAEMQTVIDKQRRKTHRLTVTVIMLSTALVGAIVFAIVKLKRFFPFLP
>NZ_CP048020.1|WP_162664859.1|2687640_2688126_-|hypothetical-protein
MNEQQYDSAKDTLLHIKRVNALLLQFLQELINRAVTHDESKLHEPEKMFFDKMTPRLKTLTYGSEEYKQALAELKPALDHHYSHNSHHPEHYENGIDDFTLADLVKMFFDWKAASERHNDGDVLKSIEINKQRFGLSEQLCKIFENTERWLCIKNTINQKE
>NZ_CP048020.1|WP_162664454.1|2688156_2688606_-|M15-family-metallopeptidase
MGVIRDIDRLKPELAKRTRAFLTELKKRGIEVIVLETDRTVDTQTAYYAQGRKPLEEVNALRKKAGLYLLTEAENKRIVTKTTQSRHFGGNAVDIAPVKDGRVWWNAPEQVWKEIGAIGEACGLDWCAGGYGQVWGKGWDNPHFELMKG
>NZ_CP048020.1|WP_162664455.1|2688608_2689301_-|hypothetical-protein
MSIEALQHKELIVIGVIILAFILMIKKGGKYTLFGQTLEVPIAGKKQTVDTIGLMYLMKDACERIELLRKERAEDILPDISYLLTGISRLSCCMYRAEAILNKRLYKNGFEDLTVQTVNGYIEQLNEELYSHLQREIHNAGRCTAHPPEPIEKSKTYAIAKEFTRRAAAIYLREVKSKVMMYESYQPLFGKLGDAIRVEFCKEKREKKIKQADALLEVLHELEAKKIEEV
>NZ_CP048020.1|WP_162664456.1|2689304_2689832_-|hypothetical-protein
MEYIEIKSNIITGHYCGAIPEKNNPAIEYRIVENCAANIGDDVRLYTDLQTGIKKPLAQLVKEGLVPVPEGKKLNEAGTDFVDMTDAEKVSAGLIQLKADEKIEGDYIVKKSKKELYDEGKLSKEEYNLYIDNLRQAAYRQEADPLGMQVMRGDIDKAVWLAKIAEIKQRYPKAE
>NZ_CP048020.1|WP_162664457.1|2690059_2690785_-|hypothetical-protein
MQYGNLIPTIYPTGVFIQSIEQTKVSDESGGDNVFTVTLTNHTQQQFVVKNGKVGSGCEGINEIRASVDSNVGTPSVEIVETDAGAKKNVSFIFKNLKGETGNVALTEEVKQHISQSVASANQYTDDAIGAVKQRIDTGDTNTLQAAKKYADQNVQAETQARAQGDMDMLADAKRYINDLLIKIFQNGYIQWPWMPKPETVFSFKGYRWAEVNYDGCFFRAKGKDANPFNGDEQGGCNKEY
>NZ_CP048020.1|WP_162664458.1|2690788_2691139_-|hypothetical-protein
MKYIKGIPRGNIGASKWNVDENIAAGQGLFSTPPDRVSMVTVSVHIPEGHARFTIETTYSSPWNIGQDGTGGYWDPPDETHTEYTENTNVTIASTVTGVRVTCLEADKIINVCFAG
>NZ_CP048020.1|WP_162664459.1|2691135_2691300_-|hypothetical-protein
MRIITDDLYAALIAHFVKDEKVSLFPKLLLSKQAEDNDTLPSETLESENEGDAE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP048020_2	2.3\|1336373\|18\|NZ_CP048020\|CRT	1336373-1336390	18	NZ_CP048020.1	1333277-1333294	0	1.0
NZ_CP048020_2	2.12\|1336940\|18\|NZ_CP048020\|CRT	1336940-1336957	18	NZ_CP048020.1	1333277-1333294	0	1.0

1. spacer 2.3|1336373|18|NZ_CP048020|CRT matches to position: 1333277-1333294, mismatch: 0, identity: 1.0

gagctgtactgctataac	CRISPR spacer
gagctgtactgctataac	Protospacer
******************

2. spacer 2.12|1336940|18|NZ_CP048020|CRT matches to position: 1333277-1333294, mismatch: 0, identity: 1.0

gagctgtactgctataac	CRISPR spacer
gagctgtactgctataac	Protospacer
******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048020_3	3.1\|2685374\|32\|NZ_CP048020\|CRISPRCasFinder	2685374-2685405	32	MN234170	Mycobacterium phage MalagasyRose, complete genome	12361-12392	7	0.781

1. spacer 3.1|2685374|32|NZ_CP048020|CRISPRCasFinder matches to MN234170 (Mycobacterium phage MalagasyRose, complete genome) position: , mismatch: 7, identity: 0.781

gttccgtcgtcttttggctccggcggtgtcgg	CRISPR spacer
ttgccgtcgtctttcggctcaggcggcggggg	Protospacer
 * ***********.***** *****.*  **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

995294 : 1001271

Burkholderia_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162663087.1\|995294_995666_+	HNH endonuclease	Q3HQV7	Burkholderia_phage	4.7e-22	40.2
WP_162663089.1\|995658_995973_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_162663091.1\|995997_996327_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162663093.1\|996331_996949_+	master DNA invertase Mpi family serine-type recombinase	H2A0H0	Bacteroides_phage	1.1e-68	69.1
WP_162663095.1\|996945_997434_+	hypothetical protein	NA	NA	NA	NA
WP_162663097.1\|997486_997822_+	hypothetical protein	NA	NA	NA	NA
WP_162663099.1\|997889_998552_+	HTH domain-containing protein	Q0H241	Geobacillus_phage	6.3e-17	36.2
WP_162663101.1\|998555_998702_+	hypothetical protein	NA	NA	NA	NA
WP_162663103.1\|998708_998984_+	hypothetical protein	NA	NA	NA	NA
WP_162663105.1\|998980_999202_+	hypothetical protein	NA	NA	NA	NA
WP_162663107.1\|999204_999549_+	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	5.7e-14	48.9
WP_162663109.1\|999602_999791_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_162663111.1\|999787_1000183_+	HicB family protein	A0A0C5AN56	Paenibacillus_phage	5.2e-19	40.2
WP_162663113.1\|1000213_1000588_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_162663115.1\|1000710_1001271_+	ParB N-terminal domain-containing protein	U3PCR3	Lactobacillus_phage	1.7e-31	50.0

DBSCAN-SWA_2

1015802 : 1070083

Paenibacillus_phage(100.0%)

tail,head,integrase

attL 1044298:1044357|attR 1077583:1077674

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162663152.1\|1015802_1016195_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_162663154.1\|1016191_1016587_+	hypothetical protein	NA	NA	NA	NA
WP_162663156.1\|1016599_1016968_+	hypothetical protein	NA	NA	NA	NA
WP_162663158.1\|1018036_1018615_+	hypothetical protein	NA	NA	NA	NA
WP_162663160.1\|1018790_1023602_+\|tail	phage tail tape measure protein	A0A0K2CYF4	Paenibacillus_phage	1.2e-45	32.8
WP_162664744.1\|1023641_1024349_+\|tail	phage tail protein	NA	NA	NA	NA
WP_162663162.1\|1024345_1026934_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_162663164.1\|1026937_1027780_+	ATP synthase F0 subunit B	NA	NA	NA	NA
WP_162663166.1\|1028326_1028689_+	hypothetical protein	NA	NA	NA	NA
WP_162663168.1\|1028681_1028909_+	LamG domain-containing protein	NA	NA	NA	NA
WP_162663170.1\|1028877_1030557_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_162663172.1\|1030777_1031212_+	C40 family peptidase	NA	NA	NA	NA
WP_162664745.1\|1031224_1032475_-	hypothetical protein	NA	NA	NA	NA
WP_162663174.1\|1033130_1033553_+	hypothetical protein	NA	NA	NA	NA
WP_162663176.1\|1033684_1034785_+	hypothetical protein	NA	NA	NA	NA
WP_162663178.1\|1034757_1035120_+	hypothetical protein	NA	NA	NA	NA
WP_162663181.1\|1035222_1036623_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_162663183.1\|1036957_1037269_+	hypothetical protein	NA	NA	NA	NA
WP_162664746.1\|1037280_1037520_+	hypothetical protein	NA	NA	NA	NA
1044298:1044357	attL	NA	NA	NA	NA
WP_162664747.1\|1044673_1045378_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_016522149.1\|1046358_1046547_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_162663185.1\|1046562_1046796_+	acyl carrier protein	NA	NA	NA	NA
WP_162663187.1\|1055010_1055898_+	hypothetical protein	NA	NA	NA	NA
WP_162663189.1\|1056016_1056376_+	hypothetical protein	NA	NA	NA	NA
WP_162663191.1\|1056566_1057253_+	hypothetical protein	NA	NA	NA	NA
WP_162663193.1\|1057260_1057863_+\|tail	phage tail protein	NA	NA	NA	NA
WP_162663195.1\|1060512_1060695_+	hypothetical protein	NA	NA	NA	NA
WP_162663197.1\|1060834_1061044_+	hypothetical protein	NA	NA	NA	NA
WP_162663199.1\|1063345_1063813_+	hypothetical protein	NA	NA	NA	NA
WP_162663201.1\|1064322_1064610_+	C40 family peptidase	NA	NA	NA	NA
WP_162663203.1\|1064881_1065163_-	hypothetical protein	NA	NA	NA	NA
WP_162663205.1\|1065493_1066177_-	hypothetical protein	NA	NA	NA	NA
WP_162661907.1\|1066585_1066777_+	hypothetical protein	NA	NA	NA	NA
WP_162663206.1\|1066721_1068581_+	hypothetical protein	NA	NA	NA	NA
WP_162663208.1\|1068683_1069262_+	hypothetical protein	NA	NA	NA	NA
WP_162663210.1\|1069246_1070083_+\|integrase	site-specific integrase	NA	NA	NA	NA
1077583:1077674	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1788661 : 1846477

Gordonia_phage(30.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162663766.1\|1788661_1789132_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_162663767.1\|1789283_1790762_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_162663768.1\|1790851_1791565_-	hypothetical protein	NA	NA	NA	NA
WP_162663769.1\|1791638_1792214_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	3.3e-14	34.4
WP_162663770.1\|1792298_1794041_+	AMP-binding protein	A0A1V0SBX8	Catovirus	6.7e-34	22.1
WP_162663771.1\|1794173_1796687_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_162663772.1\|1796891_1799162_-	glycoside hydrolase family 2 protein	L0N6M2	Herpes_simplex_virus	1.6e-27	28.4
WP_162663773.1\|1799163_1800042_-	hypothetical protein	NA	NA	NA	NA
WP_162663774.1\|1800219_1801776_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_162663775.1\|1801876_1802788_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_162663776.1\|1802816_1803683_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_162663777.1\|1803754_1805050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_162663778.1\|1805282_1805933_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_162663779.1\|1807101_1807614_-	hypothetical protein	NA	NA	NA	NA
WP_044012752.1\|1807933_1808182_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_006188554.1\|1808196_1808430_+	KH domain-containing protein	NA	NA	NA	NA
WP_162663780.1\|1808429_1808954_+	16S rRNA processing protein RimM	NA	NA	NA	NA
WP_162663781.1\|1808950_1809697_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_162663782.1\|1809674_1810034_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_162663783.1\|1810039_1811017_+	hypothetical protein	NA	NA	NA	NA
WP_162663784.1\|1811072_1811348_+	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
WP_162663785.1\|1811331_1812564_+	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_162664817.1\|1812563_1812935_+	YraN family protein	NA	NA	NA	NA
WP_162663786.1\|1813109_1813511_+	hypothetical protein	NA	NA	NA	NA
WP_162663787.1\|1816428_1816713_-	hypothetical protein	NA	NA	NA	NA
WP_162663788.1\|1816728_1816887_-	rubredoxin	NA	NA	NA	NA
WP_162663789.1\|1817086_1817470_+	hypothetical protein	NA	NA	NA	NA
WP_162663790.1\|1817515_1818508_+	radical SAM protein	NA	NA	NA	NA
WP_162663791.1\|1818754_1819432_-	hypothetical protein	NA	NA	NA	NA
WP_162663792.1\|1819510_1821475_-	TRAP transporter permease	NA	NA	NA	NA
WP_162663793.1\|1821611_1823786_-	TIGR03545 family protein	NA	NA	NA	NA
WP_162663794.1\|1823788_1824301_-	TIGR03546 family protein	NA	NA	NA	NA
WP_162663795.1\|1824470_1824686_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_162663796.1\|1824915_1825602_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_162663797.1\|1825684_1826803_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162663798.1\|1826795_1828382_+	MiaB/RimO family radical SAM methylthiotransferase	NA	NA	NA	NA
WP_162663799.1\|1828475_1828784_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_162664818.1\|1828780_1829095_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_162663800.1\|1829315_1829606_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.2e-18	45.8
WP_162663801.1\|1829607_1829931_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	1.5e-16	46.0
WP_162663802.1\|1830613_1832266_+	nucleoside kinase	NA	NA	NA	NA
WP_162663803.1\|1832577_1833156_-	hypothetical protein	NA	NA	NA	NA
WP_162663804.1\|1833426_1834062_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_162663805.1\|1834324_1836106_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.9e-26	23.6
WP_162663806.1\|1836178_1836415_+\|transposase	transposase	NA	NA	NA	NA
WP_162664819.1\|1836417_1837323_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	2.4e-11	25.3
WP_162663807.1\|1837441_1837669_+	hypothetical protein	NA	NA	NA	NA
WP_162663808.1\|1837697_1838129_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_162663809.1\|1838166_1838484_+	BrnT family toxin	NA	NA	NA	NA
WP_162663810.1\|1838455_1838722_+	BrnA antitoxin family protein	NA	NA	NA	NA
WP_162663811.1\|1838797_1840555_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-30	26.5
WP_162663442.1\|1840635_1840926_+\|transposase	transposase	NA	NA	NA	NA
WP_162663812.1\|1840930_1841785_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	2.3e-11	25.3
WP_162663813.1\|1842003_1842210_+	hypothetical protein	NA	NA	NA	NA
WP_162664820.1\|1842188_1844642_+	InlB B-repeat-containing protein	NA	NA	NA	NA
WP_162663440.1\|1845011_1845242_+	hypothetical protein	NA	NA	NA	NA
WP_162664821.1\|1845614_1845791_-\|transposase	transposase	NA	NA	NA	NA
WP_162663814.1\|1845766_1846477_-\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	1.1e-06	25.0

DBSCAN-SWA_4

1956835 : 1993142

Bacillus_phage(22.22%)

terminase,integrase,protease,head,capsid

attL 1960547:1960562|attR 1970227:1970242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162663892.1\|1956835_1957738_+\|integrase	tyrosine-type recombinase/integrase	A0A097EYL9	Mycobacterium_phage	6.6e-17	33.0
1960547:1960562	attL	NA	NA	NA	NA
WP_162664830.1\|1960587_1963962_+	type I restriction-modification system endonuclease	A0A291AXA8	Shigella_phage	1.9e-05	27.2
WP_162663893.1\|1963977_1965408_+	N-6 DNA methylase	A0A220A2U5	Liberibacter_phage	1.7e-19	27.8
WP_162663894.1\|1965404_1966220_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_162663895.1\|1966247_1967864_+	restriction endonuclease subunit S	E3T4D5	Cafeteria_roenbergensis_virus	2.5e-11	28.7
WP_162664831.1\|1968354_1968759_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_162663896.1\|1968758_1968998_-	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_162663897.1\|1969332_1970142_+\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	1.7e-19	27.8
WP_162663898.1\|1970267_1970921_-	hypothetical protein	NA	NA	NA	NA
1970227:1970242	attR	NA	NA	NA	NA
WP_162663899.1\|1971337_1971481_-	hypothetical protein	NA	NA	NA	NA
WP_162663900.1\|1971855_1973163_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_162663901.1\|1973907_1975008_+	slipin family protein	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	9.1e-13	22.7
WP_162663902.1\|1975018_1977532_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	8.1e-73	36.8
WP_162663903.1\|1978175_1978358_+	DNA-binding protein	NA	NA	NA	NA
WP_162663904.1\|1978431_1978794_-	hypothetical protein	NA	NA	NA	NA
WP_162663905.1\|1978956_1979253_-	hypothetical protein	NA	NA	NA	NA
WP_162663906.1\|1979280_1982487_-	LamG domain-containing protein	NA	NA	NA	NA
WP_162663907.1\|1982488_1984771_-	hypothetical protein	NA	NA	NA	NA
WP_162663908.1\|1984798_1984951_-	hypothetical protein	NA	NA	NA	NA
WP_162663909.1\|1985043_1985367_-	hypothetical protein	NA	NA	NA	NA
WP_162663910.1\|1985377_1986352_-	hypothetical protein	NA	NA	NA	NA
WP_162664832.1\|1986381_1986816_-	hypothetical protein	NA	NA	NA	NA
WP_162663911.1\|1986821_1987286_-	hypothetical protein	NA	NA	NA	NA
WP_162663912.1\|1987292_1987802_-	hypothetical protein	NA	NA	NA	NA
WP_162663913.1\|1987876_1988929_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_162663914.1\|1988942_1989704_-\|head,protease	HK97 family phage prohead protease	A0A288WFX1	Bacillus_phage	2.6e-19	37.8
WP_162664833.1\|1990975_1992439_-\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	8.9e-64	34.0
WP_162663915.1\|1992638_1993142_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA

DBSCAN-SWA_5

2641520 : 2696861

Bacillus_phage(23.08%)

terminase,integrase,tRNA,capsid,portal

attL 2636020:2636037|attR 2700424:2700441

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2636020:2636037	attL	NA	NA	NA	NA
WP_162664415.1\|2641520_2643263_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_162664416.1\|2643479_2644190_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_162664417.1\|2645633_2647874_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.6e-08	31.2
WP_162664418.1\|2647870_2648680_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_162664419.1\|2648710_2651968_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	1.6e-84	47.8
WP_162664420.1\|2652034_2654128_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.3e-06	35.7
WP_162664421.1\|2654142_2654895_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_162664422.1\|2654943_2656683_-	hypothetical protein	NA	NA	NA	NA
WP_162664423.1\|2656663_2657107_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_162664424.1\|2657109_2658195_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_162664425.1\|2660213_2661104_-	TatD family hydrolase	NA	NA	NA	NA
WP_162664426.1\|2661451_2662384_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.9e-19	52.8
WP_162664427.1\|2662712_2662997_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_162664428.1\|2662935_2663421_-	hypothetical protein	NA	NA	NA	NA
WP_162661910.1\|2663433_2664084_-	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_162661911.1\|2664146_2664692_-	hypothetical protein	NA	NA	NA	NA
WP_162664429.1\|2665604_2666114_-	hypothetical protein	NA	NA	NA	NA
WP_162664430.1\|2666116_2666533_-	hypothetical protein	NA	NA	NA	NA
WP_162664431.1\|2666568_2667855_-	DUF2715 domain-containing protein	NA	NA	NA	NA
WP_162661912.1\|2668802_2669309_-	hypothetical protein	NA	NA	NA	NA
WP_044014234.1\|2669528_2669771_+	hypothetical protein	NA	NA	NA	NA
WP_162664432.1\|2669751_2670171_+	PIN domain-containing protein	NA	NA	NA	NA
WP_162664433.1\|2670296_2670509_-	BrnA antitoxin family protein	NA	NA	NA	NA
WP_162664434.1\|2671095_2672490_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_162664435.1\|2672556_2672934_-	hypothetical protein	A0A2K9V3K4	Faecalibacterium_phage	1.2e-12	41.0
WP_162664436.1\|2673101_2673260_+	hypothetical protein	NA	NA	NA	NA
WP_162664437.1\|2673280_2674348_+	hypothetical protein	F6K8R9	Clostridium_phage	6.8e-05	34.7
WP_162664438.1\|2674382_2675090_+	hypothetical protein	NA	NA	NA	NA
WP_162664439.1\|2675082_2678940_-	hypothetical protein	NA	NA	NA	NA
WP_162664440.1\|2678917_2679292_-	hypothetical protein	NA	NA	NA	NA
WP_162664441.1\|2679310_2679772_-	hypothetical protein	NA	NA	NA	NA
WP_162664442.1\|2679768_2680104_-	hypothetical protein	NA	NA	NA	NA
WP_162664443.1\|2680100_2682758_-	hypothetical protein	NA	NA	NA	NA
WP_162664444.1\|2682757_2683336_-	hypothetical protein	B3GW12	Streptococcus_phage	1.1e-06	34.0
WP_162664445.1\|2683345_2683867_-	hypothetical protein	NA	NA	NA	NA
WP_162664446.1\|2683893_2684283_-\|capsid	minor capsid protein	NA	NA	NA	NA
WP_162664447.1\|2684260_2684620_-\|capsid	minor capsid protein	I1TLE6	Bacillus_phage	1.4e-18	47.1
WP_162664448.1\|2684616_2684952_-	hypothetical protein	NA	NA	NA	NA
WP_162664449.1\|2684963_2685302_-	hypothetical protein	NA	NA	NA	NA
WP_162664450.1\|2685309_2685489_-	hypothetical protein	NA	NA	NA	NA
WP_162664451.1\|2685559_2686429_-	hypothetical protein	A0A1S5SAC9	Streptococcus_phage	2.2e-33	34.6
WP_162664452.1\|2686453_2687008_-	hypothetical protein	NA	NA	NA	NA
WP_162664453.1\|2687144_2687633_-	hypothetical protein	NA	NA	NA	NA
WP_162664859.1\|2687640_2688126_-	hypothetical protein	A0A0Y0AEU3	Bacillus_phage	2.3e-40	53.7
WP_162664454.1\|2688156_2688606_-	M15 family metallopeptidase	A0A2P0PAE7	Pectobacterium_phage	7.5e-06	29.5
WP_162664455.1\|2688608_2689301_-	hypothetical protein	NA	NA	NA	NA
WP_162664456.1\|2689304_2689832_-	hypothetical protein	NA	NA	NA	NA
WP_162664457.1\|2690059_2690785_-	hypothetical protein	NA	NA	NA	NA
WP_162664458.1\|2690788_2691139_-	hypothetical protein	NA	NA	NA	NA
WP_162664459.1\|2691135_2691300_-	hypothetical protein	NA	NA	NA	NA
WP_162664460.1\|2691407_2691617_-	hypothetical protein	NA	NA	NA	NA
WP_162664461.1\|2691613_2693590_-\|capsid	minor capsid protein	A0A0A8WHV3	Clostridium_phage	2.3e-38	29.2
WP_162664462.1\|2693602_2694127_-	hypothetical protein	NA	NA	NA	NA
WP_162664463.1\|2694143_2695529_-\|portal	phage portal protein	NA	NA	NA	NA
WP_162664464.1\|2695556_2696861_-\|terminase	PBSX family phage terminase large subunit	B6CXD2	Clostridium_phage	1.4e-73	37.8
2700424:2700441	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2700731 : 2706854

Proteus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162664473.1\|2700731_2701646_-	hypothetical protein	A0A1P8DTG2	Proteus_phage	8.1e-07	36.9
WP_162664474.1\|2701672_2702281_-	site-specific DNA-methyltransferase	X2KR14	Campylobacter_phage	4.7e-51	44.9
WP_162664475.1\|2702349_2703090_-	hypothetical protein	A0A2H4JG85	uncultured_Caudovirales_phage	1.5e-30	34.2
WP_162664476.1\|2703094_2703427_-	hypothetical protein	A0A1J1J9S3	Escherichia_phage	1.5e-06	34.2
WP_162664477.1\|2703492_2703672_-	hypothetical protein	NA	NA	NA	NA
WP_162664478.1\|2703686_2704067_-	hypothetical protein	NA	NA	NA	NA
WP_162664479.1\|2704080_2704383_-	hypothetical protein	NA	NA	NA	NA
WP_162664480.1\|2704386_2704818_-	hypothetical protein	NA	NA	NA	NA
WP_162664481.1\|2705583_2705982_-	single-stranded DNA-binding protein	A6M990	Geobacillus_virus	2.3e-14	37.8
WP_162664482.1\|2705978_2706854_-	DUF2188 domain-containing protein	A0A1B1ITH1	uncultured_Mediterranean_phage	5.2e-35	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection