CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP048397	Streptomyces sp. S4.7 chromosome, complete genome	14 crisprs	DEDDh,WYL,cas4,csa3,Cas14u_CAS-V,Cas9_archaeal,DinG,cas3	5	6
NZ_CP048398	Streptomyces sp. S4.7 plasmid pSSPS4.7a, complete sequence	0 crisprs	NA	0	0
NZ_CP048399	Streptomyces sp. S4.7 plasmid pSSPS4.7b, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048397_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_1

335424-335586

Orphan

Consensus_repeat	Method
AAGCCCGGCCGGCGATTGAGGACA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP048397_1

>merge|NZ_CP048397|1|335424-335586|CRISPRCasFinder
GAGCCCGGCCGGCGATTGAGGCCGAACCCGGCGCCACAGGCGCCTGTCCCGTCGCCGGGCGGGCGGATTTGAAGCCCGGCCGGCGATTGAGGACACCCGACCACCGGGCGGACCCGGTCAACGAGACCGCGCAACCACCAAGCCCGGCCGGCGATTGAGGCCA

>NZ_CP048397|1|1|335424-335586|CRISPRCasFinder
GAGCCCGGCCGGCGATTGAGGCCG	AACCCGGCGCCACAGGCGCCTGTCCCGTCGCCGGGCGGGCGGATTTG
AAGCCCGGCCGGCGATTGAGGACA	CCCGACCACCGGGCGGACCCGGTCAACGAGACCGCGCAACCACC
AAGCCCGGCCGGCGATTGAGGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164247874.1\|329943_331059_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380649
NZ_CP048397.1\|WP_164247866.1\|326066_326831_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813
NZ_CP048397.1\|WP_164247877.1\|331071_332037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164247898.1\|334512_335280_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP048397.1\|WP_164247903.1\|338992_340003_+\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|366488
NZ_CP048397.1\|WP_164247895.1\|333164_334328_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP048397.1\|WP_164247923.1\|349388_350189_-\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NZ_CP048397.1\|WP_164247920.1\|348187_349201_-\|poly(3-hydroxybutyrate)-depolymerase	unknown	unknown	gnl\|CDD\|226040
NZ_CP048397.1\|WP_164247901.1\|335865_338868_+\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|271149
NZ_CP048397.1\|WP_164247880.1\|332154_333303_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176198
NZ_CP048397.1\|WP_164247868.1\|326832_327123_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223915
NZ_CP048397.1\|WP_164247917.1\|346575_348159_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|225525
NZ_CP048397.1\|WP_147876166.1\|342745_343117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164247909.1\|341926_342319_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164247911.1\|342328_342613_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164247914.1\|344316_346458_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237358
NZ_CP048397.1\|WP_147876159.1\|327164_328298_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226669
NZ_CP048397.1\|WP_164247906.1\|339999_340902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223139
NZ_CP048397.1\|WP_164247871.1\|328405_329947_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP048397.1\|WP_147876145.1\|325497_326097_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164247874.1\|329943_331059_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	5.66814e-154
NZ_CP048397.1\|WP_164247866.1\|326066_326831_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	2.13427e-87
NZ_CP048397.1\|WP_164247898.1\|334512_335280_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.59945e-71
NZ_CP048397.1\|WP_164247903.1\|338992_340003_+\|SPFH-domain-containing-protein	gnl\|CDD\|366488	pfam01145, Band_7, SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	3.16954e-11
NZ_CP048397.1\|WP_164247895.1\|333164_334328_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	2.00153e-131
NZ_CP048397.1\|WP_164247923.1\|349388_350189_-\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	4.5494e-74
NZ_CP048397.1\|WP_164247920.1\|348187_349201_-\|poly(3-hydroxybutyrate)-depolymerase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	3.32867e-43
NZ_CP048397.1\|WP_164247901.1\|335865_338868_+\|DUF1080-domain-containing-protein	gnl\|CDD\|271149	cd04083, CBM35_Lmo2446-like, Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446. This family includes carbohydrate binding module 35 (CBM35) domains that are appended to several carbohydrate binding enzymes. Some CBM35 domains belonging to this family are appended to glycoside hydrolase (GH) family domains, including glycoside hydrolase family 31 (GH31), for example the CBM35 domain of Lmo2446, an uncharacterized protein from Listeria monocytogenes EGD-e. These CBM35s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. GH31 has a wide range of hydrolytic activities such as alpha-glucosidase, alpha-xylosidase, 6-alpha-glucosyltransferase, or alpha-1,4-glucan lyase, cleaving a terminal carbohydrate moiety from a substrate that may be a starch or a glycoprotein. Most characterized GH31 enzymes are alpha-glucosidases.	3.27114e-50
NZ_CP048397.1\|WP_164247880.1\|332154_333303_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	1.0591e-83
NZ_CP048397.1\|WP_164247868.1\|326832_327123_+\|hypothetical-protein	gnl\|CDD\|223915	COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription].	0.00232021
NZ_CP048397.1\|WP_164247917.1\|346575_348159_-\|AbgT-family-transporter	gnl\|CDD\|225525	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism].	1.11374e-148
NZ_CP048397.1\|WP_164247914.1\|344316_346458_+\|elongation-factor-G	gnl\|CDD\|237358	PRK13351, PRK13351, elongation factor G-like protein.	0
NZ_CP048397.1\|WP_147876159.1\|327164_328298_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	7.63179e-140
NZ_CP048397.1\|WP_164247906.1\|339999_340902_+\|hypothetical-protein	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	1.41064e-11
NZ_CP048397.1\|WP_164247871.1\|328405_329947_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP048397.1\|WP_147876145.1\|325497_326097_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	5.96646e-85

>NZ_CP048397.1|WP_164247898.1|334512_335280_+|helix-turn-helix-domain-containing-protein
MGRLVPAVTRAFDILELFLEGDGKLSAPDVIRRLGLPRTTVHELLTTLAARSYLEAIPEQQGRYRLGVRAYQLGSRYAEQLDLAAEGGLVARDIAETCDETVHVAILEDLDVIYIAKVDSTHTVRMVSAAGRRLPAHCTSVGKMLLASLPEPELDARLTGSELSAMTANSITDPAVLRAALAEIRRRGIAVEHRESNSDVSCVAAPVRDRRGQVVAALSISVPMIRWTESREAELGHLASKGAEALSARLGHRSD
>NZ_CP048397.1|WP_164247895.1|333164_334328_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MRITGISTHVVGTPWRNLTYVLVHTDEGLTGVGETRMLGRTDALVGYLREAEANHIAGSDPFAVEDLVRRMKYGDYGRAGEIVMSGIAVVEMACWDIKGKALGVPVWQLLGGKVTDRVKAYANGWYTTERTPQAYHQAAKAVVARGYRALKIDPFGTGHFELDRAGTGYAVSLIEAVRDAIGPDTELMLEMHGRFSPATAVRLARELAPYDPAWLEEPVPPENLQALSKVAGKVDIPVATGERIHDRIEFRELFASQAADIIQPDVGHIGGILETRKLAATAETHYVLVAPHNVGGSVLTAASLQLAACTPNFKILEHFNDFADAEIKKIVTGAPEVDPETGCFEISHAPGLGVEFDADAAAEFPQQQARFDLWAEGWEKRGPKAAR
>NZ_CP048397.1|WP_164247880.1|332154_333303_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MLRDLPRARSRRRVRRRRGGRIPAAAGPVRPLGRGLGEARPQGGTVSSRAVVVDRPGTHRLVEGERPVPGPGEVLVKVAAAGICLSDREVYAGHRDPGYVRYPVTPGHEWSGTVESVGEGGDPALVGRRTVAEGFRACGVCDRCRAGDTSLCAGGYDETGFTRPGAFADHVTVPARLLHPLADDADLRAAALLEPAAVVAGAVRAGCPEPGERIAVVGAGTLGLLAVQFLAAYAPGELTVIEPRTARAALAPAFGAHEVIGPTAAEHRRGHYDLVLETAGAPTTAASSCLLARRGGRVVLTGMFAAGATGIDPVHLSLSQLTVRSVFGAPSAAWSFAVRAFTAGLLDPGPLITHEFPLERYAEAVALVGGGDPGTGKVLLRP
>NZ_CP048397.1|WP_164247877.1|331071_332037_-|hypothetical-protein
MTDAPAHGPRRPGERALAALDLAAPDGHPADASPHTFPDGGTWRTEIPSVEGPEALTEVLKESSRLDVPIHRISQGSGVWMLTDDEITEMAGACAARDIELCLFTGPRGTWDIGAATRTDSGGGGLRARGHDAVAGCVEDALRAAELGVKCLLVADEGVLWSLHRLRTRGVLPADTTLKVSALIGPVNPASYTVYERLGADSLNIPSDLALAHFTEIRRASRAPMDLYIEAPDDLGGYVRMYETAELIRRGAPLYLKFGLSKAPGIYPYGGHLREITLATARERVRRGRLVLDLLARHGAGGGMSPLGSRHPGPLNRFPLP
>NZ_CP048397.1|WP_164247874.1|329943_331059_-|substrate-binding-domain-containing-protein
MTMRTSRAALTVVVTSLALALTACGQSGEGGSKEEKKGGKGATVGIAMPTKSSERWIADGRNMVAEFKKLGYKTDLQYGEDDVDQQVSQIENMITKGVDVLVVASIDGRALGDVLGQAADQGIKVISYDRLILGTENVDYYASFDNQRVGVLQATYLIDKLGLKDGGDDQGPFNIELFAGSSDDNNTRYFFQGAWKTLKPYIDKKQLVVKSGQTQLDQITTLRWDGGAAQRRMDDLLTKAYGSDDVDAVLSPYDGISIGILSALKSDGYGTAAKPYPIVTGQDAEVASVKSIIAGQQTQTVFKDFRALAKQAAQMADAVLNDKKPEVNDETTYDNEKKVVPSYLLDPVSVDKANYRSVLVDSGYIKASDLK
>NZ_CP048397.1|WP_164247871.1|328405_329947_-|ATP-binding-cassette-domain-containing-protein
MTAPVLEMRSIVKTFPGVKALSDVTLNVAPGEVHAICGENGAGKSTLMKVLSGVHPHGSYQGEILFQGSPCAFKDIGASEARGIVIIHQELALVPYLSIAENIFLGNEHARHGIISWNETLRHAAALLKRVGLAEHPQTRVADIGVGKQQLVEIAKALAKEVKLLILDEPTAALNDGDSAELLRLIRELQGQGITSIIISHKLNEIAEVADSVTILRDGRTIETLDVRAESTTEDRIIRGMVGRDLDHRFPERTPYDGDPGARPALEIRDWTVHHPIDQQRKVVDNVSIHVRRGEIVGIAGLMGAGRTELAMSVFGRSYGRNISGTVFKDGREIVTKTVPQAVEHGIAYVTEDRKQYGLNLIDTIGRNITLSALSKVARRGIVDEHEETRVAESYRTSMNIKAPTVFEQAGRLSGGNQQKVVLSKWIFAGPEVLLLDEPTRGIDVGAKYEIYTVIDRLAAQGKAVVFISSELPELLGMCDRLYTMAAGRLTGEIRRADATQEVLMRHMTRNTR
>NZ_CP048397.1|WP_147876159.1|327164_328298_-|sugar-ABC-transporter-permease
MRQYGMLIALALIVVLFQIWTDGVLLKPNNVTNLVLQNSYILVLGIGMMIVIIAGHIDLSVGSLAAFVSAACAVMMVEHDIPWVLALVLGLAIGAVAGAWQGFWIAYVGIPSFIVTLAGMLLFRGGTQIFLGSRSLGPFPDGFQKISTGYLPEIGPATNYHNLTLLLGLVLLAFALIQEVRDRRRQKEYELEVLPRNLFLTKCVALAAAVLAFTMTLASYRGVPVVLLLLAALLIGFGYVMRNAVVGRHVYALGGNRAAAKLSGVKDRRVTFLVFVNMGVLAALAGIVYAARLNAGVPQAGVNFELEAIAAAFIGGASMSGGVGTVFGAIIGGLVLGVLNNGMSLVGIGTDYQQVIKGLVLLAAVGFDVWNKRRVGA
>NZ_CP048397.1|WP_164247868.1|326832_327123_+|hypothetical-protein
MDTDGTRDQVYEDGNALGGPLSEIFAVDLTAAVGRCAGCGATGPMARLRVYDRAPGLVARCPDCGRVVLRLVRGPDTAWLDLQGASSLAIPLGPPS
>NZ_CP048397.1|WP_164247866.1|326066_326831_+|oxidoreductase
MARAAVPGRLMPPPGRLRWLVAELVGRRTESRTARTLVFDVPGWPGHLAGQHVDVRLTAEDGYSTQRSYSLASAPDGQRVELTVQRVPDGEVSPYLMDDLEPGHLVELRGPVGGWFVWRPEQREHVLLVAGGSGLVPLMSMVRVRGAVDGRAPFRLLYSVREPDDRLYVPELLRGAPGLGTAYLYTRAAPPEHPRPVGRLSADDLVRSGWPADLRPMCYVCGPTGFVEAAASLLTGLGHAPERIRTERFGPSGG
>NZ_CP048397.1|WP_147876145.1|325497_326097_+|molybdopterin-dependent-oxidoreductase
MAIISRGFHGRRPAPGRDLPPGQYEVHDFPVLSAGPTPRVTHEDWKFTLRTETGTEHTWDWARLMEMPGESPTVDLHCVTKWSKFGTRWEGVSLDLLMEGVETAAEFALVHSYGGYTTDLPLEDLLDGKAWIAHRYDGEELAPEHGGPARLLVPHLYLWKSAKWVRGIDLLLDDEPGFWEGLGYHSYGDPWREQRYQGD
>NZ_CP048397.1|WP_164247901.1|335865_338868_+|DUF1080-domain-containing-protein
MDQRPSRRLRRCLLSLLAVSFLTTGLVSTPAAAEPVARELPPQEPGVTLRVFDVQVPLDKICTLKPGQTPNVDKLMPTIDWSSTEDFGGIGDNFVSQVIGNIDVPQDGSYNFRLTSDDGSRLLIDDKVAIDHDGLHGADPKDGSVNLTAGHHALRIDHFDRTGGQNITLAWQPPGASGFAVVPNSVLSTDADVVRVTAPGRKECEGVKDSPGDGLPLTDVHPNYTLTDLRPSGFEPQVTAMDWLPDGRLAVTTWGGTDNETGEVYLLSDVTGSTGPEKVKAKKVAEGLKEPQGIKYVDGSLYVSQKDELTELQDTDGDDVTDTYRKVATWPFGGNFHEFAFGLLYKDGFFYLNLSVSINLGGATTDPQPAKNRGSTIKVNKETGEVSYVAGGLRTPNGIGWGPEGDIFVTDNQGGWLPSSKLVHVKQDRFFNHYTNPAGPFDTQPVTKPVLWLPQNEIANSPSTPLLLEEGPFAGQMVFGDVTYGGLQRGYLEKVKGEYQGAVFRMTQGLEAGVNRISMGPDGAIYAGGLGAGGNWGQEGKLSYGLQKLTPNGDKAFDILAMRAKPGGFELEYTKPLSAETIAELVDRYEVEQWYYAPTPDYGGPKIDEETLKIQSATVSADGKKVTLAIDGLKSNRVVHVRSPRPFSAEGGETLWSTEAWYTLNSLVGAEEPTKTLYEAEEAALTGGARVDTEHAGHSGGGFVDSYGTQGATTTFDVRTTRAGKYDVALRYANGPNPFVGDKTVSLYLNGRKMKQTVLPSTGKWDGWATVTESLPLSRGANTIAYRYDSGDTGHVNLDLITVHPKDSRITLFDGKDRSQWQHTDGSDVRWPLADDGAMEVCCGDIRTKQSFQDFKLHIEFRVPQLPPDVTGQDRGNSGVYLQERYEVQILDSFGKEQLADNDAAAIYLKKAADLNASTAPETWQTYEITFRAARFGADGKKTEDARVSVVWNGKTVHDDVAVNGPTGAGAPETTASGAIRLQDHGNKVRYRNIWIEPTA
>NZ_CP048397.1|WP_164247903.1|338992_340003_+|SPFH-domain-containing-protein
MADITKRPGWRHLRSAPTAHIRHHRRGRLVHDGPGLSFWFRALSAALSEVPVNDRELAMAFHARTADFQDVTVQATVTYRISDPALASARLDFSLDPDTGAWRGAPLEQISTLLTGTAQQHALDVLARTPLAAALSDGVAAVRDRIDAGLAAEPRLPATGLEVVTVRVVAVRPEAEVERALRTPAREQIQQEADRATYERRAVAVQRERAIAENELASQIELARQEEQLVEQRGTNARREAEESAAADAVRTEAEAERRVRLATADADAARRTGEARAAAQAQWLRVHGEADAATLRALAVERLAENLPRVDSVTVSPDVLTGLLAALGRQDGERA
>NZ_CP048397.1|WP_164247906.1|339999_340902_+|hypothetical-protein
MTLAPRAVLVHRTTEYEELLARHGTHGQAAFFLSSRDRDIREVAERHHRTLRALGDVAAAVPHRWRQSRVERADLDRFLFGPEDVVVVVGQDGLVANAAKYLAGQPVVGIDTDPGRNPGVLVRHRAADAGALLEAAVAAGRGVEELTMVEAVADDSQRLLALNEICLGPPGHQTVRYRLSTDDQAPPAPEAQASSGVLVGTGTGATGWLRSLWHERASTLPLPDPADRRLLWFVREAWPSPTTGTSLVSGALTSTERLCLTVESDRLIAFGDGMESDALTLTWGQTVHVGISPTTLRLLS
>NZ_CP048397.1|WP_164247909.1|341926_342319_+|hypothetical-protein
MTARRFFPTAASALGAARKTAVVVPAAVLVSYIDAYLVRASTGPTGWLFGTEFWLVALVLAAIPVLGWTDGDESWVRVFVLDALVTGAVAGPLLLFHGALVALVAVPAVAVLGVSGLLLARTYGADDRGA
>NZ_CP048397.1|WP_164247911.1|342328_342613_-|hypothetical-protein
MTTYPLTEEQAGMLTWVRWAYAGMSVLAVACLVSALWAGHPGEQTLLTSTAGVLAFPVLTLLSFRQLHRHRVALEELRRRHDGSRPPLPRQWAA
>NZ_CP048397.1|WP_147876166.1|342745_343117_-|hypothetical-protein
MRNNRVVLGPGPPLEERVGVLVEEWIRDGRGSDHLVTGKAFFALYSWYGRRWAEHDIGWSEYVAASYDFIGGRSGWEAMLRERAECEGCRDTYRLENIGLCTGCMRYTCYACGAHEACAGEVV
>NZ_CP048397.1|WP_164247914.1|344316_346458_+|elongation-factor-G
MRTDVHRQHTNPLPTALNDPLNAVRNLGILAHVDAGKTTVTERILYLTGTTHKRGEVHDGTTVTDFDPQERDRGITIFAAAVSCDWDGHRINLIDTPGHVDFADEVERSLRVLDGAIAVFDAVAGVEPQSESVWRQADRHGVPRIAFVNKLDRAGADLDAAVESIRERLHPAPLVVQLPIGTEDGFTGVVDLLRMRSLVWSGGDTDSYEEGPVPDALVAEALRRRGLLEEAVAELHRLALEEFCAESTLSARTLVRALRDLTRTGEGVVVLCGSAYRNRGIEPLLEAVVAYLPSPLDVPAVRGTRGGAVQERSADPAGPFAALVFKVNSTSTGRLTFLRVYSGTVGKGEAVLDVGTRRTERVSRILRVQADRHAEVDRAVAGDIVAVVGVKAARAGATLCVPTAPLVLEPPAVADPVVSVAVEARSRTDVDRLVPALARLVEEDPSLVVRTDPETGQTVLSGMGELHLEVAVEKVRRAHGLEIGVGRPRVAYRETVARGVSGLVYRHVKQDGGAGQFAHVVIDTEPLEAAADTGGGAGARDREADFAFRSTVVGGRVPQEYVRAVEAGCRDALAEGPLGGHPVTGVRVTLTDGAVHSKDSSEMAFRTAGRLALREALRAGAMVLLEPVVEVTVTVPDEAVGGVLGDLAARRGRVSGSTVRAGTTVVTATVPLAELFGYATRLRSRTQGRGTFTARPTGYAPAPASVTGAVTGT
>NZ_CP048397.1|WP_164247917.1|346575_348159_-|AbgT-family-transporter
MSTPTPAPPGTPGTPGTSGTPTEPRLPLIVRAMGVIERAGNALPHPFWLFWILSGILAVVSAVLAAADVSVVSPADDKTVAVQNLLSGDGLAMAVSTMIENFATFPPMATIVVVIMGVAVAERSGFLAALMKVGVSRVPASWVVFAVAFAGTVAHVASAAAYIILVPLGGLAFRAVGKSPILGVVVAYTAIASGYDASPLPTPNDAIFAGITTAAAQIVGGDDAYVSPLSNWFFNIASSFLLAVVITLVTKYVLSKRPDLDADPDADLDDLGGLSLSDRERSALRRAVYTLLAAAVVLAAALLPVSSPLRGEGGSIVESPFLDGIAAVVAFLFGLVGIVYGTRSGSIKKAADVPRLMGEGIKQMAPVLVLFFAIAQFLAYFDWTHIGDVLAVRAAEALQSSGLPIVVVFLMILLLLTLVNVMVTSGSAMWALAAPVLVPMLMLVSVPAETTQALFRIADSGSTAITPMSPYFLMALGFLQRYRKSAGIGTLASYTLPLAVTMTIAWTLLFLAWWALGIPLGPGAPVR
>NZ_CP048397.1|WP_164247920.1|348187_349201_-|poly(3-hydroxybutyrate)-depolymerase
MKQTPLGGRRPGRRARALFRTTVATAGLALVGSALAPVTATAAAAPAARPASADGCRQPAPQQPGTSGLRTVASGGLSRTYQLHLPANYNPRHDWPVVLAFHGRGNTGVGTEEFSGLSNLPAIVAYPNGVIGTGDGDRQAWQGAPYAAAGVDDVAFTGDLIDELRRTLCVDERRVYATGKSNGAGFTGLLACRMSDRIAAIAPVAGAFYPETGENCRPSRPVPVIDFHGTGDVTIPYAGDPDRGLPAIPDWTAAWADRNDCRPRPKTSTMEPDITITRHSGCDHGAEVRHVAITDGGHTWPGADSYSGGGYATETIEAHEVMWQFLRQYRTPRSVVR
>NZ_CP048397.1|WP_164247923.1|349388_350189_-|creatininase-family-protein
MSSEQPLPHLPPSERPTRLAELTTVEAADAVTSSPVVILPAGAFEQHGPGMPMATDTLRAEAVSDLVAAELGGRAVIGPSLPVGVSPHHLAFAGTVTLTTTTFAAVVREYVDSLYRHGWRKILVVTGHGGNNATLGTVAQDLLVTRPDLQFAWTPLTTLAPDAVADMRVGEVHGHSGEAETAQMLHLAPHLVRTDLLTPGPTATADLDPLSRLSRRGHPALTVGYDRLSPNGVLGDPRRATAAAGQAIVETAVSRIAAFVKEWLDA

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Crispr_ID: NZ_CP048397_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_2

1458797-1458912

Orphan

Consensus_repeat	Method
CTCAACACGACGCAAGAGGCCGGACGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_2

>merge|NZ_CP048397|2|1458797-1458912|CRISPRCasFinder
CTCAACACGACGCAAGAGGCCGGACGATGACGGGAACCACGGGAATCGGCCGGGGGTCCGGGGGGCGTTCCCCGGGTCGGCACAGTCTCAACACGACGCAGGAGGCCGGACGATGA

>NZ_CP048397|2|2|1458797-1458912|CRISPRCasFinder
CTCAACACGACGCAAGAGGCCGGACGATGA	CGGGAACCACGGGAATCGGCCGGGGGTCCGGGGGGCGTTCCCCGGGTCGGCACAGT
CTCAACACGACGCAGGAGGCCGGACGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164249407.1\|1455024_1455453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164249397.1\|1450314_1451544_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP048397.1\|WP_164249405.1\|1454199_1454874_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP048397.1\|WP_164249416.1\|1460372_1461650_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP048397.1\|WP_164249409.1\|1456392_1457112_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|273824
NZ_CP048397.1\|WP_164249399.1\|1451672_1452191_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP048397.1\|WP_164249395.1\|1447452_1450032_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP048397.1\|WP_164249422.1\|1462928_1463186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164249420.1\|1462304_1462679_+\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_CP048397.1\|WP_164249425.1\|1465951_1466320_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NZ_CP048397.1\|WP_164249418.1\|1461800_1462088_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_CP048397.1\|WP_164249401.1\|1452256_1452463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164249429.1\|1468825_1469659_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP048397.1\|WP_164249403.1\|1452809_1454111_-\|CynX/NimT-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP048397.1\|WP_164249423.1\|1463168_1464158_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP048397.1\|WP_164254414.1\|1464308_1465943_-\|sodium/solute-symporter	unknown	unknown	gnl\|CDD\|271374
NZ_CP048397.1\|WP_164249427.1\|1466555_1468088_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173799
NZ_CP048397.1\|WP_164249393.1\|1446509_1447259_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381605
NZ_CP048397.1\|WP_164254415.1\|1468148_1468769_-\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP048397.1\|WP_147872018.1\|1455617_1456388_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|236124

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164249425.1\|1465951_1466320_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	1.8011e-32
NZ_CP048397.1\|WP_164249397.1\|1450314_1451544_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.08151e-94
NZ_CP048397.1\|WP_164249405.1\|1454199_1454874_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	2.34626e-44
NZ_CP048397.1\|WP_164249416.1\|1460372_1461650_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP048397.1\|WP_164249409.1\|1456392_1457112_-\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|273824	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. [Fatty acid and phospholipid metabolism, Biosynthesis].	9.76559e-122
NZ_CP048397.1\|WP_164249399.1\|1451672_1452191_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	2.09521e-42
NZ_CP048397.1\|WP_164249395.1\|1447452_1450032_-\|FHA-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.54551e-74
NZ_CP048397.1\|WP_164249420.1\|1462304_1462679_+\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.19195e-20
NZ_CP048397.1\|WP_164249403.1\|1452809_1454111_-\|CynX/NimT-family-MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.58738e-127
NZ_CP048397.1\|WP_164249429.1\|1468825_1469659_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	6.99994e-34
NZ_CP048397.1\|WP_164249418.1\|1461800_1462088_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	7.76394e-06
NZ_CP048397.1\|WP_164249423.1\|1463168_1464158_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	6.65552e-179
NZ_CP048397.1\|WP_164254414.1\|1464308_1465943_-\|sodium/solute-symporter	gnl\|CDD\|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP048397.1\|WP_164249427.1\|1466555_1468088_+\|S8-family-serine-peptidase	gnl\|CDD\|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	5.08632e-53
NZ_CP048397.1\|WP_164249393.1\|1446509_1447259_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.63947e-29
NZ_CP048397.1\|WP_164254415.1\|1468148_1468769_-\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	1.95809e-19
NZ_CP048397.1\|WP_147872018.1\|1455617_1456388_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	1.6619e-174

>NZ_CP048397.1|WP_164249409.1|1456392_1457112_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MSRSVLVTGGNRGIGLAIALAFVGNGDKVAITYRSGEPPEALTEAGALAVRCDITDAEQVEQAYKEIEETHGPVEVLVANAGITKDQLLMRMSEDDFTSVLDTNLTGTFRVVKRANRGMLRAKRGRVVLISSVVGLLGSAGQANYAASKAGLVGFARSLARELGSRDITFNVVAPGFVDTDMTKVLTDEQRAKIVANVPLGRYALPEEIAAAVRFLASDDAAYITGAVIPVDGGLGMGH
>NZ_CP048397.1|WP_147872018.1|1455617_1456388_-|enoyl-ACP-reductase-FabI
MSGILAGKRILITGVLTDSSIAFHAAKIAQEEGADVILTGFGRLSLVERIAKRLPKPAPVIEVDVTNQEHLDSLADRIREHQGEGASLDGVVHSIAFGPQGVFNFLEAQWEDVSTAVHVSAYSLKSLTTACLPLMERGGSVVGLTFDAQFAWPKYDWMGVAKAALESTNRYLARDLGARNIRCNLISAGPIKSMAAKSIPGFEDLAEVWSHRAPIGWDLADPEPTGRGVVGLLSDFFPKTTGEIVHVDGGVHMMGA
>NZ_CP048397.1|WP_164249407.1|1455024_1455453_-|hypothetical-protein
MYRRARKVAASLTVAVLIVAGLAVTALVRDDPPPPPVKKASVADTAGAGRATAAADGRDGGERDPFGASCRTAIKGSSVTAYCHNPYPGTDRVQLHVECARWWDVDSDSAPAEAGPARHLQLTGRCWKEVDSAWVSHARVDP
>NZ_CP048397.1|WP_164249405.1|1454199_1454874_+|FCD-domain-containing-protein
MALTSPRRSALSDQVITELRNQITSGEWPVGSRIPTEPELVEQLGVARNTVREAVRALAHNGLLDIRQGSGTYVVATSELAGVMHRRFADADARHIAEVRSTLEAAAARLAAERRTEREMRQLETLLARREEAWAGGDAELFVAADATLHLAVVSASHNEVLTALYADLSELMRDGLRADVGRELRPAFHLDHARLVAAIRAGDTETAGAEAASHAFTCLRESV
>NZ_CP048397.1|WP_164249403.1|1452809_1454111_-|CynX/NimT-family-MFS-transporter
MLDETTTPLSPREDIAPAPADSPAPSPSHGTTVWLTRLLVVGLVLAAVNLRPAITSLGALLEDVRAGLHMSGSVAGVLTSVPALCFAVFGVTAPRLARRFGPGAVVCAGMVAITAGLLIRPFTNGTAAFLAASALALMGIAVSNVLMPVIVKRYFPDRVGTMTGLYSMSLSAGTAVAAAATVPMTGALGGSWRLGLGLWAVVAAVAVLPWAALLVRDRRSAATATGGGEGERKRTSAPAHAPRIARSRTAWALGTFFGLQATGAYITMGWMPQIFRDAGVSAGTAGLLLAVTMVMGVPLAFVIPRLATRMKNQGPIVIALGACGLTGYAGLFLAPAAGAWVWALLLGISNCAFPLALTMIGMRARTGPGVVRLSAFAQSTGYLISIPGPLLVGVLYQHSGGWELPITLMAGLMVPQIVLGVVAGRDRTIEDEC
>NZ_CP048397.1|WP_164249401.1|1452256_1452463_-|hypothetical-protein
MAAPTHTRSHRPSPDTVEISLPWWAIALPAIAFAALLLLMAGPGQANAAAGDPGVGRVVHQIQQTLAR
>NZ_CP048397.1|WP_164249399.1|1451672_1452191_-|histidine-phosphatase-family-protein
MSVETPRRIVLLRHAKADWPDVADHERPLAERGRADAPVAGRRLAETGIAFDLALCSTAARTRETWKLAVHELPQRPRTVYEDRLYDATLGDLLALLTETSDEVNDLLLIGHNPGMHALADALSARAEGDALGRLTASAFPTSAFAVIGFTGSWKTVEPDVGTLLEYWAPHD
>NZ_CP048397.1|WP_164249397.1|1450314_1451544_+|phosphoserine-phosphatase-SerB
MSASQPRQATDAAPTLLVKIFGKDRPGITAGLFDTLAAYSLDVIDIEQVVTRGRIVLCALVTSPGGDGAEGALRATVHSWAESLKLQAEIISGTGDNRPRGSGRSHVTVLGHPLSAESTAAIAARITSTGGNIDRVFRLAKYPVTAVEFAVSGAETEPLRTALATEAAEIGVDVAVVSAGLHHRAQRLIVMDVDSTLIQDEVIELFAAHAGCEEQVAEVTARAMAGELDFEQSLHARVALLAGLDSSVVDKVRTEVRLTPGARTLIRTLKRLGYQVGVVSGGFTQVTDALKEQLGLDFASANTLEIVDGKLTGRVVGEIVDRAGKARLLRRFAAEAGVPLSQTVAIGDGANDLDMLNAAGLGVAFNAKPVVRRAADTAVNVPFLDTVLYLLGITREEVEEVEGAEGPSV
>NZ_CP048397.1|WP_164249395.1|1447452_1450032_-|FHA-domain-containing-protein
MGHGVPELVLELNGRTWTLDQSRSYTLGRDPQGDLVIDDARVSWRHATISWGGRSWVIEDHGSTNGTYVQGQRIHQMEIGPGTAVHLGNATDGPRLSLSGAAAGAYNPQGAAPQQAQAPQAQAPQVQQPQPQGGPGWAPQQQPSQQQPQQPQHGYVPPQHGGPGGPAAGGPGGHGGPGSGGAAGAPPVYGDRSPTTFHQVALGRVMRIGRALENELVVSDLQVSRLHAEFTSTPDGRFQIRDLGSHNGTYVNGQPIPKSGTALIGPNDIVGVGHSTFRLVGDRLEEFVDTGEVSFSARHLTVTVDGGKQILKDVSFGVPEKSLIAVIGPSGSGKSTLLKALTGYRPANEGDVLYDNRNLYKQFAELRQRIGLVPQDDILHKELTVRKALKYAAKLRFPGDTAESEREARIDEVLRELKLDIHKEKRVTSLSGGQRKRVSVALELLTKPSLIFLDEPTSGLDPGMDRDVMQLLRGLADDGRTVLVVTHSVAELAICDKLLVMAPGGSVAYFGPPKEALNFFGYTTWADVFSAFENYRDYDWAGRWRGSQHYQMYAADIDAVAAQSVHMPSPQQMRPPKPQSWGSQLWTLIRRYSSVIASDRGFLGLMVILPAVLGVVSVVIPAEYGLGPPEAPDRFNGKAGTILLILAVGMCFSGAANSVRELIKERVIYERERATGLSRSAYLMSKVIVLGVITAFQGVIICGIGFAPRALPDEGLIMPPAVEMCIVIIALGFTSMMFGLVISSLVKTAEKTMPLLVMFAIVQVVFTGTLFQVYGSPGLEQFAWLMPSRWAIAGTGSTLDLAHLMPPWDPKSPNDLDPLWDHSVAQWGFNVTVLLLIGVVCGVVVARLLRRHEPEVMRK
>NZ_CP048397.1|WP_164249393.1|1446509_1447259_+|transglycosylase-SLT-domain-containing-protein
MTASSTTGNRLKKSHKLSIAGVTAVAAAAVSFSLIPGNASAESQSKNVAASVSTAPAAWNIANGSGQAAAAHKSLTKQDNIADRVAEIHAKQGSATATVKADTKDKTAAEKKATAKAKAAEKAKKRAAEKAKANRSADRKPAYANNLNGWIKEALSIMKKEKIPGTYEGLHRNIIRESSGDPRAINNWDINAKNGVPSIGLLQVIKPTFDAYHVKGTPDSQYHPVANIVAAANYAADRYGSIDNVDSAY
>NZ_CP048397.1|WP_164249416.1|1460372_1461650_+|tyrosine--tRNA-ligase
MTDIVDELRWRGLIALSTDEDALRKAFADGPVTFYCGFDPTAPSLHLGNLVQILTMRRIQLAGNRPLGLVGGATGLIGDPKPNSERTLNEPEVVGEWVQRLRGQIERYLDFEGPYAATMVNNLDWTSGLSAISFLRDVGKYFRVNKMIAKEAVSRRLNSDAGISYTEFSYQILQGMDFLELNRRYGCTLQTGGSDQWGNLTAGTDLIHRVEPEASVHALATPLITKADGTKFGKTESGTVWLDAERTTPYAFYQFWLNAEDRDVSKFLRIFSFKSRTEIEELEKLTEERPQARAAQRALAEELTTLVHGADQCAGVVAASKALFGQGELTGLDAATLAAALSEVPHARVAELVPVVDLLTEVGLAPSKSAARRTVKEGGAYVNNVKVTDSEAVPDAGELLHGRWLVLRRGKKNLAAVEVTADTVS
>NZ_CP048397.1|WP_164249418.1|1461800_1462088_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MSWLWAIIVGLVLGLIAKAIIPGKQQIPLWLTTVFGILGSILGNAAAGWLGVEDTKGIDWTRHVLQLIGAIVVVGVGDMLWSSIRSARGRARASR
>NZ_CP048397.1|WP_164249420.1|1462304_1462679_+|DUF3099-domain-containing-protein
MRKQRSAEVFQITGARRGLDEDVRGRQRRYVISMLVRTLGIILAVVLWNVERYVAIAGLVLGILLPYVAVVIANGGRERARSLPSTHLDPAVRPMIAPAPATGGAESGARSANHGHPAPPRERA
>NZ_CP048397.1|WP_164249422.1|1462928_1463186_+|hypothetical-protein
MDLFDFPGAASGPDGPVCSAKGCRAAAVWVLAWNNPKLHTPERRKTWLACDEHREHLSSFLGVRGFLKDVVALTDWEREHSAADG
>NZ_CP048397.1|WP_164249423.1|1463168_1464158_-|GTP-3',8-cyclase-MoaA
MLIDTYGRVATDLRVSLTDKCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLVRIAVTRLGVRDVRFTGGEPLLRPGLVGIVERCAALAPRPRMSLTTNGIGLKRTAAALKAAGLDRVNVSLDTLRRDVFKTLTRRDRHQDVLDGLAAAREAGLTPVKVNTVLMPGLNGDEAPELLAWAVGHGYELRFIEQMPLDAQHGWKRDGMITAGDILQSLSTRFTLTEEDGEERGSAPAERWIVDGGPHRVGVIASVTRPFCSACDRTRLTADGQVRTCLFAREETDLRAALRSDATDESVATLWKLAMWGKKAGSGLDDPAFLQPDRPMSAIGG
>NZ_CP048397.1|WP_164254414.1|1464308_1465943_-|sodium/solute-symporter
MQLTEAAGIHLANSDASEHRPLIITLFALFVIATLVITVWAGRQTKSAADFYAGGRQFTAFQNGLAVSGDYMSAASFLGIAGAIALFGYDGFLYSIGFLVAWLVALLLVAEPLRNSGRYTMGDVLAYRMRQRPVRTAAGASTIVVSIFYLLAQMAGAGVLVSLLLGITSDAGKILIVALVGILMIVYVTIGGMKGTTWVQMVKAVLLIAGTLLITFLVLLKFNFNVSDLLGSAASNSGKGAAFLEPGLKYGLTETSKLDFISLGIALVLGTAGLPHILIRFYTVPTAKAARKSVNWAIGIIGGFYLMTIALGFGAAALLTPKEITDSNPAGNTAAPLLAMEIGGGGDSTGGAILLAVISAVAFATILAVVAGLTLASSSSFAHDIYANVIRRGKATEKEEVRAARYATVAIGVVSIALGALARDLNVAGLVALAFAVAASANLPTLLYSLFWKRFTTTGALWSIYGGLSSSVLLVLFSPVVSSKPSSMFPDVDFAFFPLENPGLISIPLGFLLGWLGSLMSKEEPDVKKYAELEVKSLTGTGAH
>NZ_CP048397.1|WP_164249425.1|1465951_1466320_-|DUF485-domain-containing-protein
MATDGPPPKGDSDTSTPAQPTTAQFVQVQESPEFGELRRTYRSFAFPLTLAFIAWYLLYVLLSNYAGGFMGTKLFGNINVAFVFGLGQFVTTFLIAWFYSKFASQKLDPKGAAIKSRMEADL
>NZ_CP048397.1|WP_164249427.1|1466555_1468088_+|S8-family-serine-peptidase
MAHLRSGRRRALALPVGLALIASLGFLPAGSASAAPVDDTAAAVSTDGPKLSYVVNTNGGHSTVKSVKKAIAKAGGTVVIAYDQIGVIVVHSQNPEFGETIRKVRGVASAGATRTKPLSAQTTTDIKAEQPLSAKEAKAATAKASEDQDALEPLQWDLPAIKADKAHQKTLGSSRVTVGVIDTGVDDTHPDLAPNFDRGASVSCVGGTPDTADGAWRPGPGESDHGTHVAGTIAAAKNGTGITGVAPGVKVSGIKVSQPDGFFYTEAVVCGFVWAAEHGVDVTNNSYYTDPWLFNCEDDPDQKALADAVTRATRYAEGKGAVNVAAAGNSDLDLAADELTDTSSPNDTTPGDRVIDPKECLDIPSQVSGVVTVSATGAKNLKASYSNYGLGVIDVAAPGGDRTAYQAPEAPAVNGMVLSTLPGGGFGYKGGTSMASPHAAGVAALIKSKHPYASPWLVKTLLSAQADAASCTNPYDIDGDGTVDAVCEGGKNKNGFYGAGVVDALDAVRW
>NZ_CP048397.1|WP_164254415.1|1468148_1468769_-|lysoplasmalogenase
MGGRLAKALLVAFAVAALAELVAVAVDSRTGQLLAKPVLMPLLAAYVAARRGPRPLVAALLLGWGGDVFLLSSDDGAFLAGMGCFAAGHLCYLTLFGRRRTRVDLAVGYGLLLLVTLALLWPGLPAELRVPVAVYSLLLAAMAYRASGLGVLAGAGGALFLLSDTLIATGVAEWPQPPAVDLWIMLTYIAAQALLTAGILTARPRT
>NZ_CP048397.1|WP_164249429.1|1468825_1469659_-|sterol-desaturase-family-protein
MPPNLPDVVLWSIPAFVLLTLVEVVSYRLHPDEDAAGYSGKDAATSLSMGLGSLGFDLLWKIPVVAIYTAAYELTPLRVPLLWWTIPLMLLAQDFLYYWSHRGHHVVRILWACHVVHHSSRKFNLSTALRQPWTSLTVWPFYLPFILLGAHPAALAFCSSANLVYQFWVHTERIDRLPRPFEYVLNTPSHHRVHHASQGGYLDRNFGGILIVWDRLFGSFAAETVRPVFGLTKNIETYNPLRVATHEYAAIARDVRAARDWRERAGRVFRGPGWQPE

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Crispr_ID: NZ_CP048397_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_3

2126617-2126717

Orphan

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_3

>merge|NZ_CP048397|3|2126617-2126717|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGAGATCGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGG

>NZ_CP048397|3|3|2126617-2126717|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGG	AGATCGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164250203.1\|2124806_2125010_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164250201.1\|2124233_2124569_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164250214.1\|2141120_2143202_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239155
NZ_CP048397.1\|WP_164250210.1\|2136368_2137646_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP048397.1\|WP_164254470.1\|2140180_2140981_+\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP048397.1\|WP_164254469.1\|2128940_2130674_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP048397.1\|WP_164250212.1\|2137865_2139233_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_CP048397.1\|WP_164250207.1\|2130673_2132608_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP048397.1\|WP_147872945.1\|2126922_2127219_+\|YtxH-domain-containing-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_078077473.1\|2114817_2115213_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|133390
NZ_CP048397.1\|WP_164254468.1\|2119550_2120336_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP048397.1\|WP_147872949.1\|2134347_2136270_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP048397.1\|WP_164250209.1\|2132881_2134138_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_CP048397.1\|WP_164250205.1\|2125250_2125781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164250197.1\|2120477_2120735_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP048397.1\|WP_164250191.1\|2113946_2114762_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270256
NZ_CP048397.1\|WP_147872946.1\|2127307_2128759_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|198375
NZ_CP048397.1\|WP_164250195.1\|2119041_2119554_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP048397.1\|WP_164250193.1\|2116628_2117830_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP048397.1\|WP_164250199.1\|2120731_2122612_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164250214.1\|2141120_2143202_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP048397.1\|WP_164250210.1\|2136368_2137646_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.91662e-70
NZ_CP048397.1\|WP_164254469.1\|2128940_2130674_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.79583e-162
NZ_CP048397.1\|WP_164250212.1\|2137865_2139233_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_CP048397.1\|WP_164254470.1\|2140180_2140981_+\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	4.37348e-54
NZ_CP048397.1\|WP_164250199.1\|2120731_2122612_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.10958e-25
NZ_CP048397.1\|WP_164250207.1\|2130673_2132608_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP048397.1\|WP_078077473.1\|2114817_2115213_-\|TOBE-domain-containing-protein	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	2.99801e-14
NZ_CP048397.1\|WP_164254468.1\|2119550_2120336_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.71697e-27
NZ_CP048397.1\|WP_147872949.1\|2134347_2136270_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP048397.1\|WP_164250197.1\|2120477_2120735_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	2.50774e-16
NZ_CP048397.1\|WP_164250191.1\|2113946_2114762_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.28721e-82
NZ_CP048397.1\|WP_147872946.1\|2127307_2128759_+\|sugar-kinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	3.91592e-122
NZ_CP048397.1\|WP_164250195.1\|2119041_2119554_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.99134e-19
NZ_CP048397.1\|WP_164250193.1\|2116628_2117830_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.37916e-56
NZ_CP048397.1\|WP_164250209.1\|2132881_2134138_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	3.14377e-160

>NZ_CP048397.1|WP_164250205.1|2125250_2125781_-|hypothetical-protein
MKTRPTVSPEDGRMALAITHHHLELHAAVSLALLVGLSPGTISRLNVRDWAPGRAPQLTIRGTCARTIRVARSAAAALGTYLGDEPTTPYEPLVLGLHERGWIEGVFGDHAQRAGLRVSVFDLRRLAVATVLAAGIPQLHAEAYFNLPAADGTPRSSVEHGYDMEVARVLESQFGC
>NZ_CP048397.1|WP_164250203.1|2124806_2125010_+|hypothetical-protein
MLTFEQAAARLVEDGHVARMTGEGLRKAARTHPDWPITQAMYGKAANARTLPYELAVRFVKTRRRQN
>NZ_CP048397.1|WP_164250201.1|2124233_2124569_-|hypothetical-protein
MTDRIRAAATQAAPTTEDGLRRILALPSIASQVLTAAADHLAEHKPDQELTVAGWARALALADARVLTSYPSYVAQHAGRRALRALTPDMWASSRTRGEWALCLRAAAGTV
>NZ_CP048397.1|WP_164250199.1|2120731_2122612_-|SpoIIE-family-protein-phosphatase
MAHNSSFTIDTRGNVSRWDDEAGRYPELSSRDVVGAPAGLVIERLLGSHDGDSGGHAPAALFLTACRGEAGTVIASRGTAPSLHAADVESAFEFSAFEHSTAGLEVYDADLSVLRANSAALAMRGRSAEQVLQHHVGNLDSRLPLAPLLQRVIVGDEAAVQERINGRDGRGDPRVFAVTAFQLRDDQQTIGAGAVIHDVTDQNRSEAAARLLAEAHEEIGSTLDAMRTAQELAVVAVRDFADAVSVDLVDDVIQGAEAPAPPVGADVVLRRAAFEAPGGLQAVYRVGEMSYFAFPTPCAQVIADLTPVLLDPKTSPSDWLMHDAARAGALGNAGIHSMIIVPLSFHARVLGLASFYRGPRHPVFFDASDVGLAYTPGSNETVWFDVIELSGARVGLAIGRVSQQGLNASAAMGRYRTALDTLAVLDLPPHELLARLDDATGQFLSNPTGLPSSSTDPPCCLYAVYDSVTGEFAVASAGWPAPLLISPAGDITTVEVPVGAPLGQGLGHDLHRQVIAPESMLVLFSQSFLEPGPRAEERMVQLRQAATRSGRAPKAICDSIVRRMLGGLGGESAALLAARTHRLPDDRVAAWTGSRDPAAVGEARERLLSKSRSGVLRHMRSRRKWW
>NZ_CP048397.1|WP_164250197.1|2120477_2120735_-|ATP-binding-protein
MSELVANAIRHASGNPTVRLIRDRYLTVEVSDNATTAPHLRHARAQDEDGRGLLIIASLARRWGTWYTPDGKTIWVENSLDEVRL
>NZ_CP048397.1|WP_164254468.1|2119550_2120336_-|alpha/beta-fold-hydrolase
MPVLADDLGHLSYTVTGDGPPVVLVHAGIADHRMWDATVPGLAERHTVICYDLRGFGGSATPAGPFSETDDLRLLLDHLGHERVRLVGASWGGRVAVEFALAHPDRVCSLALLAPPWPGYDWSAGMVAYDEAETAALAAGDVDAAVLVNLDMWLRGPAREWRDVDPALAGQLRASVRTALMNQDAVEEHSQGGEAGDIGTIAVPTLVGIGGLDVADFQDIARRYAAGIPGATLVEFPTAAHLIALDAPEELTAALVPFLAR
>NZ_CP048397.1|WP_164250195.1|2119041_2119554_+|GNAT-family-N-acetyltransferase
MVRLRVLTTNDWPLWREARLAALTEAPHAFKSLLADWDRGGEERWRARLETPGTYNVVVSLNGRTAGMASGVPGEGGVCELRSVWVGPGARGLGVGNRLIAAVETWARRSGATTLKLAVIPGNESAVALYRRNGFLLTDERGDLLPDGVTTERVMAKPLRPAEGRSTGGT
>NZ_CP048397.1|WP_164250193.1|2116628_2117830_-|IS3-family-transposase
MVMKHYPPEFKADAVALYRSRPGATIRSVAADLGVNPETLRNWVRAAGANRPRGRRAETAAEPPTPLEEENAALRKKVRELEEEREILRKAAKYFAGGDALVNRFQFVADHQRRFGVKRLCTILGIARSSFYYWRNTAAARAARKAADAKLAARIRTIHHSSDGTYGVPRITAELRENGERINHKRVARLMQTTGLAGLRLRRKHRTTIADPTAAKAADLIGRNFTAAKVNTKYVGDITYLPLTGGKFLYLATVIDLASRRLAGWAIADHMRAELVTDALAAAERCRGSLAGAVMHTDHGAQYTSRAFADACRRAGVMQSMSAIGSSADNALAESFNATCKRETLQGRRAWADEREARLDLFRWLHRYNTRRRHSSLGQRSPIAYETALNSTSTTLAPAA
>NZ_CP048397.1|WP_078077473.1|2114817_2115213_-|TOBE-domain-containing-protein
MQSYTIGQAARLLGVSTDTARRWADAGRVATHRDEGGRRLIDGRDLAAFSIEVGQGGSGEEDVSYTSARNAFPGIVTAVKLGDVAAQVEIQAGPHRLVSLLTREAVEELGLEVGMRATARVKSTSVHIDRV
>NZ_CP048397.1|WP_164250191.1|2113946_2114762_-|molybdate-ABC-transporter-substrate-binding-protein
MSFTLSAAVRRAAATALTAALLVPVTACGGGDSDDSDAGAKSTESATGAPEAQLTVLAASSLTDVFKTAGAAYEKENPGTKVTFSFAGSQELAAQVGQGAPADALVTADTKTMDGLKDDTGTPTVIAKNRLVIATGEGNPERIENLEDLADTELKVVLAAPEVPVGRYSEQVLGAQKIDVRPVSQEPNVRAVLSKVELGEADAGIVYKTDAATATDKVDAIEIPDGRNAVAEYPAATLKTSEHADAAAAFVAWLSSPEAQKLLQDAGFQQP
>NZ_CP048397.1|WP_147872945.1|2126922_2127219_+|YtxH-domain-containing-protein
MRRLTFIAGLAVGYVLGTRAGRERYEQLKKSASRISQNPAVRNAAETAALSGREYAGKAYHSVSDKVGDKVPGSVADRVRSLRSRNGNGEDDWGTTNT
>NZ_CP048397.1|WP_147872946.1|2127307_2128759_+|sugar-kinase
MGIVAGLDSSSGSTRIVVCDADTGAVLRQGYAVHPVEPKATEVDPQAWLLSLGEAAGGGVLEGVQAIGVSAQQHGLVPLDQSGNLVRPALLGNDKRAQVAAADLIDALGGRQAWAEAVGSVPQSGQPLAKLRWLARNEPDAARRTAMVLQPHDWLVWQLLGRPARRTTDRGAASGSGFWSARTGEYRPDLMELALGHQAALPEVLGPAEAAGTTPEGLLISAGTGETMAAAFGLGVGIGDAVVSLGASGSVMTVHHEALADPTGMITSFADATGMHLPVVHTLNAVRALRGTAELLGTEDLDELSALALKSTPGASGLVFLPYLEGEKTPHLPHTAGTLTGLRRESMKPEHLARAAFEGMLCSLADAMDVVRGRGVEVRRVFLLGAAAGLPAVQAAAPGIFGAQVVVPEPAEYAALGAARQAAWALGVSKNTLSPHSPPDWRGAAVQVFEPGEEAAVGAAVRQQYTSARDHIHPGAFSAAPGA
>NZ_CP048397.1|WP_164254469.1|2128940_2130674_+|ATP-binding-cassette-domain-containing-protein
MLLRLLRTHLAPYKKAIGLLVVLQLLQTCASLYLPTLNADIIDNGVVTGDTGYIMEFGALMIAVSVLQVLGQIGAVYYGARTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGQDVPLSAVLLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKKRFEGANTALTETQLATGRLMALMFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVPPEDPVLMLRRHGHLEVRGAEFRYPGAEEPVLRDVSLTARPGETTAVIGSTGSGKSTLLGLVPRLVDATAGEVLVDGESVRRLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTDLEGGLNAPIAQGGTNVSGGQRQRLAIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIIVMDEGRVVGQGRHRELMAGNETYREIVLSQLTEAEAA
>NZ_CP048397.1|WP_164250207.1|2130673_2132608_+|ATP-binding-cassette-domain-containing-protein
MSGPGGRMMAAGAGSPSQRSMDFKGSSKRLLRQLAREKVTLWWMVAAGVLSVAASVVGPKILGSATDLIFAGVVGRQTPGGAGKEETVSRLREEGDSGLADLLSGVDFVPGQGIDFDAVGRVLLVALAVYVAAGLLMLVSTRLSIRVINLTIYRMREDVQAKLSRLPLSYFDRQQRGEVLSRATNDVDNISQTLQQTMGQLINSLLTIVGVLGMMLWISPLLALVALVTVPLSVLVATKVGKRSQPHFVQQWKSTGTLNAHIEEMYTGHALVKVFGRQDESARAFKEQNEALYQAGFKAQLNSGVMQPLMFFISNLNYVLVAVVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEKDAPSAARAHELRGRVALDGVAFRYEPDKPLIDDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDDIDIATMSREDLRSRIGMVLQDTWLFGGTIAENIAYGAAGEVTREEIEEAARAAHADRFIRTLPDGYETVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHGGLLAAQGAYARLYAAQFAQAVAEVD
>NZ_CP048397.1|WP_164250209.1|2132881_2134138_-|sigma-70-family-RNA-polymerase-sigma-factor
MPVFSERGRSTHGGPLIPADPLIVYGTDGGPAAHVPLPHAPDPAAITLEAAPVQTQTQTQTLTETELVSAVPSQSRAAHHPEATPEPAPETVTEDPVDIPEVPERVSPRGKADSGGPSSDLFRQYLREIGRIQLLTAVEEVDLARRVEAGLFAEEKLGSTPDLDSQLALDLDRLVVRGRMAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTHEEVGAQLELTAERVGEVLRLAQEPVSLHAPVGEEDDVAFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD
>NZ_CP048397.1|WP_147872949.1|2134347_2136270_-|DNA-primase
MAGRINDDDVKVVRDAVPIDTVVSEYLQLRPAGGGNLKGLCPFHDEKSPSFQVSPSKGLFHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPTHQRGERIRLVEAHKAAAEFYAERLGGEEAEIGRKFLAERGFDQAAAEHFGVGYSPAGWDHLTRFLRGKGFSDKELLLAGLSQDGRRGPIDRFRGRLMWPIRDISGEVVGFGARKLRDDDNGPKYLNTPETAIYKKSQVLYGVDLAKKDIAKASRAVVVEGYTDVMACHLAGITTAIATCGTAFGTDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAAETYIAIAPDGMDPCELRLSKGDAAVQDLVEPRTPLFEFAIRQIVSRYDLETPAGRASALDEAGPIVARIKNGASQHEVAVQLAGILGILDTQFVVKRVAQMARWARDRGGRGPAGPADGRGSRPNGPQGSYDSGSSPALSGPALNLRSPAHRTERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRRAVEDAGGAEQGIVSAPEYLAGVREAAPNDAVRALVTELAVEVFHGKTIDEAYAGEQLVRVRLRAVDLRIHDVTSTLARLGTGADAERHQAVQNELWVLQQYRQSLRNSGAAAL
>NZ_CP048397.1|WP_164250210.1|2136368_2137646_-|FAD-dependent-oxidoreductase
MVDAHRTFVIVGGGLAGAKAAETLRSDGFTGRVIVIGDEGDHPYERPPLSKGFLLGKEERDSVFVHEPSWYARHHVELHLGQTVTGIDRDTRCVHLGDGTSVRYDKLLLTTGSEPRRLDIPGTGLAGVHHLRRLAHADRLRHVLTALGRDNGHLVVAGGGWIGLEVAAAARGYGAEVTVVEPRPTPLYDVIGPELGQLFTELHGEHGVRFHFGARLTEIVGQDGMVLSVRTDDGEEHMAHDVLAAIGAAPRTGLAEAAGLDLVGREQGGGIAVDLALRTSDPDIYAAGDVASVPFSLPGTDLPADRLRVEHWANALNGGPAAARSMLGQDVRYDRLPYFFSDQYDLGLEYSGWAPPGSYDQVVVRGDAGKREFIAYWLKDRRVLAGMNVNVWDVTGDIQRLIRSGAQQDLDALADPTVPLDTLGT
>NZ_CP048397.1|WP_164250212.1|2137865_2139233_-|deoxyguanosinetriphosphate-triphosphohydrolase
MEGITAPHDGIPYDEADTRRFSAEPDKRPGRTAFQRDRARVLHSSALRRLAGKTQVVTPGSQSQEWDASPRTRLTHSLECAQVGRELGAALGCDPDLVETACLSHDMGHPPFGHNGEQVLNDFAKDCGGFEGNAQSLRLLTRIEPKRFVRADSVTPEVTTPHAEAAVEAEAAAGGGARLVSVGLNLTRAVLDAATKYPWQQGAHPTDPDSVKFGVYEDDLPVFEWARRGAPPNRTCFEAQVMDWADDVAYSVHDFEDGLHAGHIDHRVLLSAPERDEIWAVAIGRYVPHDTDPDQLAAALDRLTAQEWWPHGYDGTAVAQARLKDATSQLIGRFCLAAEGATRAEYGTGRLTRYGASLVVPREAREECAVLKTVAHRYVMQRADQESLRADQRIVLAELAWTLTARAPEGLDPQFRALFETAVDDRARKRVIVDQIASLTDAAARSLHTALTGRT
>NZ_CP048397.1|WP_164254470.1|2140180_2140981_+|DUF218-domain-containing-protein
MPRLRKARLRLAPSTRSREAGARSRLRLRLRLRLPARLRELRPPSLRLPRTRRGQRRGAQAVMVGCVLALTPATWMHTTADARIRSVADVPARDVAVVFGAGLRDGAPTPYLAHRLDAAAELYEGGKVKVVLVTGDNSREEYDEPDAMRTYLTARGVPDGRIVSDYAGFDTWDSCARARQIFGVERAVLVTQGFHVRRAVALCRAAGVDSYGVGVAERRDVTWYYGGVRELAAAGKAALDTVTRPDPHFLGPRETGVTEALASEGR
>NZ_CP048397.1|WP_164250214.1|2141120_2143202_+|molybdopterin-dependent-oxidoreductase
MTDAAVPTHCPYCALQCGMSLRPTADGPGVEVVERADFPVNRGALCGKGRTAPAVLSSRVRLTEPLVRRSAGGPLEPAGWDEALGAVAAGLARTRADLGPDAVGVFGGGGLTNEKAYTLGKFARVVLGTSQIDYNGRFCMSSAAAAHQRAFGLDRGLPFPLADIPRTGCVILVGSNLAETMPPALRYLTELRENGGTLIVVDPRRTRTAEQADLHIAPRPGTDLALALGLLHLVVTQGRTDEAFIRERTTGWPETRAAAMAHWPEHVERVTGVPVPQLRQAVRLFCDAPTGMVLTARGPEQQSKGTDTVGAWINLCLATGRAGRPLSGYGCLTGQGNGQGGREHGQKADQLPGYRKLTDPAAREHVARVWGVDPDGLPGPGRSAYELLDALGGDVRALLLMGSNPVVSAPRAAHIEGRLRSLDFLAVADVVLSETAALADVVLPVAQWAEETGTTTSLEGRVLLRRRALSPPAGVRSDLQVLHGLAELLGHEKGFPADPEEVFEELRRASEGGPADYSGITYRRIAAEDGVFWPCPGEGHPGTPRLFLDRFATDDGRARFVPVVHRPAAEETDAEFPVLLTTGRVVSQYQSGAQTRRVDELNAAAPGPFVELHPRLAERLGVAEGDRLAVVSRRGRAVAPARITTAIRADTVFMPFHWPGEGRANNLTNPALDPTSRMPEFKVCAVRVEPVGD

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Crispr_ID: NZ_CP048397_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_4

2223853-2223958

Orphan

Consensus_repeat	Method
CGGTGTCGTAGCCGTAACCCTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_4

>merge|NZ_CP048397|4|2223853-2223958|CRISPRCasFinder
CGGTGTCGTAGCCGTAACCCTGTTGTTGCTGTTGCTGTTGCGGCTGGGCGTACGGGTCGTACGGAGCCTGCTGCTGACCGTACGGGTCGTAGCCGTAACCCTGTTG

>NZ_CP048397|4|4|2223853-2223958|CRISPRCasFinder
CGGTGTCGTAGCCGTAACCCTGTTG	TTGCTGTTGCTGTTGCGGCTGGGCGTACGGGTCGTACGGAGCCTGCTGCTGACCGT
ACGGGTCGTAGCCGTAACCCTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_078077391.1\|2221268_2221922_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP048397.1\|WP_164250305.1\|2227532_2228129_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164254478.1\|2210414_2211230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164254479.1\|2230260_2231382_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP048397.1\|WP_164250289.1\|2214845_2216453_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP048397.1\|WP_164250295.1\|2219143_2220487_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|172015
NZ_CP048397.1\|WP_078077390.1\|2221918_2222350_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NZ_CP048397.1\|WP_164250293.1\|2218091_2218991_-\|methyltransferase-type-11	unknown	unknown	gnl\|CDD\|236841
NZ_CP048397.1\|WP_031231688.1\|2220465_2220699_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164250291.1\|2216449_2218045_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|224806
NZ_CP048397.1\|WP_164250285.1\|2209334_2210180_-\|DegV-family-EDD-domain-containing-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP048397.1\|WP_164250307.1\|2233818_2235321_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|133009
NZ_CP048397.1\|WP_147873013.1\|2228200_2229493_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP048397.1\|WP_164250287.1\|2211414_2214315_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP048397.1\|WP_164250299.1\|2224139_2224769_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NZ_CP048397.1\|WP_164250303.1\|2226322_2227429_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164250301.1\|2225167_2226292_+\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320684
NZ_CP048397.1\|WP_147873009.1\|2224807_2225017_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_147873014.1\|2229587_2230115_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164254480.1\|2231532_2233587_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367953

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_078077391.1\|2221268_2221922_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.86252e-59
NZ_CP048397.1\|WP_164254479.1\|2230260_2231382_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP048397.1\|WP_164250289.1\|2214845_2216453_+\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	2.85983e-10
NZ_CP048397.1\|WP_164250299.1\|2224139_2224769_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	7.65671e-101
NZ_CP048397.1\|WP_164250295.1\|2219143_2220487_+\|DUF2029-domain-containing-protein	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	1.24769e-47
NZ_CP048397.1\|WP_078077390.1\|2221918_2222350_-\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	2.92394e-41
NZ_CP048397.1\|WP_164250293.1\|2218091_2218991_-\|methyltransferase-type-11	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	1.92149e-37
NZ_CP048397.1\|WP_164254480.1\|2231532_2233587_-\|hypothetical-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	0.000366318
NZ_CP048397.1\|WP_164250291.1\|2216449_2218045_+\|oxidoreductase	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	2.29793e-41
NZ_CP048397.1\|WP_164250285.1\|2209334_2210180_-\|DegV-family-EDD-domain-containing-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.59885e-104
NZ_CP048397.1\|WP_164250307.1\|2233818_2235321_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	1.04567e-74
NZ_CP048397.1\|WP_164250287.1\|2211414_2214315_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP048397.1\|WP_147873013.1\|2228200_2229493_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP048397.1\|WP_164250301.1\|2225167_2226292_+\|M48-family-metalloprotease	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.57119e-77

>NZ_CP048397.1|WP_078077390.1|2221918_2222350_-|ribosome-silencing-factor
MTATDRAIELINTAAQAAADRLAHDIIAYDVSDVLSITDAFLLASAPNDRQVKSIVDEIEERLNKELGAKPVRREGDRDARWILLDYVDIVVHVQHSEERVFYALERLWKDCPELPLPEDAVKTRGKGAEHAEVNGSMDGELS
>NZ_CP048397.1|WP_078077391.1|2221268_2221922_-|histidine-phosphatase-family-protein
MNGSRGGRGRRVILWRHGQTSWNLERRFQGTTDIELTADGVAQARRSARLLASLRPDAIVASDLQRVVATANELASLTGVPVSYDSALRETYAGAWQGLTHEEIVERFGEQYLAWKRGEPVRRGGGELETEVADRAAPVVLHHADKLPDGGTLVVVSHGGTIRTTIGRLLGLEAHHWEGLGGLSNCCWSVLGEGARGWRLQEHNAGTLPEPVLGDDD
>NZ_CP048397.1|WP_031231688.1|2220465_2220699_-|hypothetical-protein
MGAHRRKCDWCGSGTPIVRDMDPLNASFQYWCEECARALIIKGDPIETYRELEGEPIYGRLLDEHCTLKRFYSFATA
>NZ_CP048397.1|WP_164250295.1|2219143_2220487_+|DUF2029-domain-containing-protein
MCRSSGIPSAAVPTLHGPSGRPPNRFRYAPIGLLLSPFVTVSTPVLTRVTAVRRSVLTGAGVCLLSFAGFWIAQRLAAVSMIDLMVYRAEGRTVLDGLDLYAMRATRAGLPTTYPPFAALLFTPLTLLPVPEMRTLATAGNLLLLVAFVHLSLKLAFRDAVQPGAALWVAAVAVWCEPVWTTLRYGQINLLIGVAVLWDLTRRHGHRWAGAGIGLAAAIKLTPALFAVMLLITGLLRFREAGWNPWLRQAAVAVGAFLAATVASAVVLPSDSHRFWTEIVFRADRVGRAEGAANQSLRGVFARVLHTVDPSHWWLPVATVVAVAGLAVAVTAARRGRTAEATVACAATALLISPISWSHHWVWCVPTVLLLLAHGRTEWAVAVGVGFWSYALWRVPHGAVERLELAQNRSQMVLTAIYPTMALGMLVYLAVVGRKEPARGDYAVAKE
>NZ_CP048397.1|WP_164250293.1|2218091_2218991_-|methyltransferase-type-11
MSNSPTAPGLWHRLLDVLRCPLCDGPLAPPHGVPESFSTLRGVKSLGCAAGHSFDVARQGYLSLLTGSANTANADNAAMVTARTLFLDAGHYEPLARALADTVAGLCPADGTVMDAGAGTGYYLAAVLDALPEAVGLGLDASKFALRRAAGAHPRAGAATGDIWKPLPVVSGAADAVINVFAPRNGPEFRRVLRPEGALVVVTPTARHLGELPASLGMLSVDAAKEDRLHRTLSGHFRQERTDVVERRATMTDQDVRDLILMGPSAHHLGAEEVHRSVASLDTPLPVTVSFLVSVYRPL
>NZ_CP048397.1|WP_164250291.1|2216449_2218045_+|oxidoreductase
MNAPLPDVPEVRVVGLPQLTQGFDLVERLDLSMHLKVHGPLEPLTGELLAQLAENITLRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDTVLLNRAPHLILDGALLAAEALGARTLVVAVTRNSTEISMRAALAERGLSNRRGQQLRARVVRTPERMVSGEASSVIRAANGGPALPPGRRERAAESGIGGAPTLLSNAETFAQLAIGARIGARRYGHTGLDAEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQLAGAPPLPQGVLTGGYHGNWIDSVAAHEAVVSRESLAAVGGSLGAGAILPIGPETCPLGEALRVANWLAAETSGQCGPCRLGLPAAAGGLSDVLNGGGPAALEALREVTQAVRGRGACKHPDGSARFFMSTLSAFTDDLAAHVLDGGCGRDTTGVLPLPGPGYQTAEESIPSGEKLAVDWTLCQGHGLCADIVPELIRLGPDGYPALADASVPMHLRGRAQRAVRRCPALALRIEQPAPQRPARQAGPAALPPGGGRKALGMGR
>NZ_CP048397.1|WP_164250289.1|2214845_2216453_+|hypothetical-protein
MSRSVQGGLSVAALVLIPLLAVAGSDGFRAMLDFTTGVLSLVSLTAAVAWGLMATDRLLLSPRHRLLAQGIHRFTAMASLGFLLLHATVKVSLGHVALIGAVLPFSLGITGTSGLIGLGSLAGFLMVVAASTGALRSAFAVPGKVAGRWRALHMLAYPAWCFALMHGLYAGRAAATWVMTLYCLALVGVIGAVSVRLLPRPVQRRIADRILTLTGGVREISEPQQPERRDLTREPLPGTAGLPRVEFEQRFPRQRSASDPASPPASALPLGPPLGAARVPPRIAPPSPPLYEAGRPPSADPFADTFVPDSFTPPSAAPYAAAPPTPAAPYPDPLADTFVDPGRGPGAGPGAGTGPGTSLSAGYRAVSLGTEPPARTPAPAPPPFGGAPDPLTSPGIPYAERIPMTEEIPVISEPSAAGAGLWPTPSPPAPVQARSHEPGADAARPPVTDPYQQPSPYQQQYQRQETYHWAETNQRSDTYLQSAPYPQPDAAPGPGLHQQADPYRQSDDTFQQPPANGGGTPSAGEPWYPPAGDRP
>NZ_CP048397.1|WP_164250287.1|2211414_2214315_-|leucine--tRNA-ligase
MSETNPAAAGAETTAPTAPHRYTAAMAADIEARWQDFWDTDGTYEAPNPTGDLAGDPAVVGRPKKYVMDMFPYPSGTGLHVGHPLGYIATDVYARHQRMSGYNVLHTLGFDAFGLPAEQYAISTGTHPRESTEAAMENMTRQLRRLGLGHDKRRSIATIDPEFYRWTQWIFVQIFNSWYDPEADRARPITELVARFESGERPTPDGRSWSELTENERADILGGYRLAYASDAPVNWCPGLGTVLANEEVTADGRSERGNFPVFKSKLRQWNMRITAYADRLLDDLDALDWPDAIKQQQRNWIGRSEGARVDFPVGDAGAITVFTTRQDTLFGATYMVLAPEHELVEKIVPAAWPEGTHDVWTGGHATPADAVDAYRKQAASKSDVERQAEAKDKTGVFTGGYATNPANGERIPVFIADYVLMGYGTGAIMAVPAHDSRDFAFARAFELSMRCVVEPEDGRGTDPAEWDDAFVAYDAKIVNSSAPAVTLDGLGVVDAKAKITEWLVTEGIGEGTVNFRLRDWLFSRQRYWGEPFPVVYDEDGIAHALPESMLPLALPEVDDYSPRTFDPDDADTRPETPLSRNEDWVFVELDLGDGRGVRRYRRETNTMPNWAGSCWYELRYLDPHNTRELVDPTVEQYWMGPREGMPHGGVDLYVGGAEHAVLHLLYARFWSKVLFDLGHVSSVEPFHKLYNQGMIQAFVYRDSRGIAVEAAEVEEREDGHWYRGEKVSKLLGKMGKSLKNAVTPDEIFAEYGADTLRLYEMAMGPLDVSRPWDTRAVVGQYRLLQRLWRNVVDEATGEVTVLDVPDADIDVTTLRALHKAIDGVGQDMAALRFNTAIAKITELNNHLTKRGAPIARSVAERLVLLVAPLAPHVAEELWRKLGHTGSVVHEAFPAADPAYVVDESVTCVVQIKGKVKARLEVSPSISDADLEALALGDAAVVAALGGAGIRKVIVRAPKLVNIVPA
>NZ_CP048397.1|WP_164254478.1|2210414_2211230_-|hypothetical-protein
MEAVLLIVALLFVAFVALGVYVSVKAVRAAKRGVDRTITQARRTVEDTTLRAKSLGQTGVTAELAQLRLSLRTSMRATQEALRANEAEDASLSESLHLFQRLSVYGRELDDELRRLERDPDRATLSRRLPELRDRTERITKSADSLRWAARDRARKFSEDELTLLSEQIDVESGALRHWSAVEPDAGRNTQAGQVGPQPMEWPEPEASAPEQTGQPGGRTARPEGVEPTLADQTWPAPTPAAERPQAIDPPDPRQTTYPWQEKSARPETTN
>NZ_CP048397.1|WP_164250285.1|2209334_2210180_-|DegV-family-EDD-domain-containing-protein
MSRHVAIVTDSTAYLPPQAMERHGITAVPLTVVLGDRALEEGTEISARSLALALQKRRSVTTSRPSPEVFAAAYRAAAEAGATGIVSLHLSAEFSGTYDAAVLAAREAPVPVRVVDTGMVAMALGFCALAAAEAAESDGSLDEAVAAAEKRAAGTYAYFYVDTLDYLRRGGRIGAAQALFGSALAVKPLLQLDGGRIELLEKVRTASKAIARLEEIVADRAGTGQVDIAVHHLAAPERAAALADRLRERVPGLAELHVSEVGAVIGAHTGPGLLGAVVSPR
>NZ_CP048397.1|WP_164250299.1|2224139_2224769_-|nicotinate-nucleotide-adenylyltransferase
MGEREASAAGAKGGARRRLGVMGGTFDPIHHGHLVAASEVAALFDLDEVVFVPTGQPWQKSQSAVSPAEDRYLMTVIATASNPQFSVSRIDIDRGGKTYTTDTLRDLHSLHGDADLFFITGADALSQILSWRDAEELFALAHFIGVTRPGHDLTDDGLPKGGVSLVEVPALAISSTDCRGRVAQGDPVWYLVPDGVVRYIDKRQLYRGE
>NZ_CP048397.1|WP_147873009.1|2224807_2225017_-|hypothetical-protein
MCAKSPPPIEWVLPKMSLYSTAANLVTVAAEGGEHGGNHESLNAYLTGGGALFALLLALWITTRFNRDR
>NZ_CP048397.1|WP_164250301.1|2225167_2226292_+|M48-family-metalloprotease
MTEDSHEAASHENVPSRQRKRFPGISSRAYEHPADRSALVALRKLSGFDTVFKAMSALLPERSLRLLFLSDSVRVSDVQFAHLHTMLLDACYILDLEKVPTMYVAQNPMPNAMCIGLDEPIIVVNTGLVELLDEEEMRAVVGHEVGHALSGHSVYRTILLFLTNLALKVAWIPLGNVAIMAIVSALREWFRKSELSADRAGLLVGQDPQASMRGLMKIAGGNHLHEMNVDAFLEQAAEYEAGGDLRDSVLKILNVLPRTHPFTTVRAAELKKWGESRDFQRIMDGHYPRRSEDKDTSVSDSIRDSASHYADTVRTSKDPLMKLVGDIAGGAGDLGGKLRDRFTGNGGGNSGGGNGSGSGSGSEGNGGRPADDGK
>NZ_CP048397.1|WP_164250303.1|2226322_2227429_-|hypothetical-protein
MAARGDPPEGTPEGTPGGGDDEYRSVVFDESFVRAARLQEFSAKERMGDHSHAVRRRDPAEKPGAGSPTPRRGSLQVLLLVLVIAVAFGTAVYVGVRPPYRPAVTRSAEPLRMTVIPLAPAGVVPGDDPERLLRQSPAVKFPTGASGIPLPLARRTPHFTENEVMTALTTAKDYLVASSVDPDVLTGAERRSVRALLDPQQRAQFDASFADPADDGRHAPAGWLVSFDPAKVALADSAVHVRGTLRFAESTPGTIDVMSDHTFVYALRPVGRSLGETGKKDASLFTVRRTLHFRFDRDDLPGHRAELLTSQVQAGPQACSVEAASTLTPLLAGARAKPAGPAGTDPYATGPPSAGLCGVLDSGAQPGG
>NZ_CP048397.1|WP_164250305.1|2227532_2228129_-|hypothetical-protein
MPDDVGGKPFPDGWEPDDDRGGADEDFASVVFDEDFIRSAPIHEPTAVERLLAAAQARADAEAARARSYGGPFDDDRYEDGFGPAGGYGGQRPYGVAYDPDDPDGDFGPYGRHGGALRPYRGSARWHRPVAWILAVVMGIGMVALAFTAVYRGASGNRQDRVPPPATTGLDSSRGGGGSASSTQYSVPEVSAVPRSTP
>NZ_CP048397.1|WP_147873013.1|2228200_2229493_-|glutamate-5-semialdehyde-dehydrogenase
MTSLSPYDNLTPVTRTAYRARSAAADLAPLPRSVKDDALLAIADALEVRTQEIIKANGEDVGRAREAGTSEAIIDRLTLTPERVRAIAADVRDVAALPDPVGEVVRGSTLPNGIDLRQVRVPLGVVGIIYEARPNVTVDAAALCLKSGNAVLLRGSSSAYSSNTALVRVLRDAVGGAGLPADAVQLVPGENRDSVRELMRARGLVDVLIPRGGASLIRTVVEESTVPVIETGTGNCHVYVDAETDLDMAVEILINSKAQRPSVCNAAETLLVHQDIAAAFLPRALDALAESGVTVHADERVLEFAEEAGGTKATVVAATAEDWETEYLSYDIAAAVVDSLDAAVAHIRLWSSGHTEAIVTTSQAAARRFTQLVDSTTVAVNVSTRFTDGGQFGFGAEIGISTQKLHARGPMGLPELTSTKYIVTGDGHTR
>NZ_CP048397.1|WP_147873014.1|2229587_2230115_-|hypothetical-protein
MRRTRPGAGSLGSGGGTLHARRAAGEERTLTSVEAGPDFDDFDDVQDPGPSRRTQARGEDRAVSKLWHITLSVSGSQAPLTEVRRGLEQLAHDHPFLLTSRYANDHAEIRYWEEARDLHDAAAVALRLWGEHRSSARLPPWEIVGLEVIDRETYHLRIAEGYGPPPAAPVGVHPF
>NZ_CP048397.1|WP_164254479.1|2230260_2231382_-|glutamate-5-kinase
MARQYVTQARRIVVKVGSSSLTTASGGLDADRVDALVDVLAKARGGGEKEIVLVSSGAIAAGLAPLGLARRPRDLARQQAAASVGQGLLVARYASSFSRYGLRVGQVLLTTDDTSRRSHYRNAYRTLDQLLTMGTVPVVNENDTVATEEIRFGDNDRLAALVAHLVRADLLVLLSDVDGLYDGDPARPGAARIARVDGPDDLVGVSMGSAGKAGLGTGGMVTKVEAARIAAAAGIPVVLTSAGRAGDALAGRDTGTYFGRTGRRSADRLLWLAHASTPQGALTLDEGAVRAVVERRTSLLPAGIASVEGEFSAGDPVELRDTTGRAVARGLVNFDAKEIPQLLGRSTRDLARDLGPAYEREVVHRDDLVILHQ
>NZ_CP048397.1|WP_164254480.1|2231532_2233587_-|hypothetical-protein
MLAALIPNLWFFAAACAVTYGADRFLHQRNSYLVNRLNKVRAGLSIRFLVRQLLLVLLLARMDLAEQPLFYAAVAGFLLFYGLQAPQGALATLIRLRRGMPVVARNVDLHSLRIPDAPPNYLVNRSAEKMLHLDVFAIAGLLVAAETGADIYGYVGLGITLVLGLVYILLLVPYLRRSRRVPTPPAVLGAVDNWLREYQPSVVLYFSGSKESAYQVNMWLETLEQSEGRPLVVLRERAIMTQLAPTWLPVLCVPGGTHLMNLDLSSVQVALYAANVGKNIHLLRVPTMKHVFIGHGDSDKIASVNPFSKVYDEVWTAGRAGRDRYALADVGVRDDDIVEVGRPQLAPIRTGSGTPGHPVPTILYAPTWEGWDDNPGNTSLLLAGENIVKRLLKAEKPVRVIYKPHPFTGIRDKKAKAVHDRITAMVNAANVARAAEPRWTKEAADAQAGQAAARAELTRIEGQLAALTAPGRSGGDESEESRVSLADPERLDRAKALRAQWNDAYWRTFGWWEHKVVTGAEPKLYDCFNQSDGMVSDISSVVSDFIASGKPYAVTDSAQLGVEEFKRQNTAVRAAVVLSNSAAELDELLKAVADPAADRLASARRELKTYLLGPDEPTSIQQFNAAVAALGAKAVARNVGVRQRLSAQEQPGTEPEREPAADPDAATVAADATEPNGAQAPLAR
>NZ_CP048397.1|WP_164250307.1|2233818_2235321_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSVPHAAHPRTTAVVLAGGTGQRVGLSIPKQLLKIAGKAVIEHTLSIFEQSDSIDDVIVLMAPGFVPDVEKIVAKAGLTKVTKVIEGGQTRNETTERAISALGEGLAEGEDRNVLFHDAVRPLLSQRVIKDCVDALDRYEAVDVAIPSADTIIVTRTHGGDGEFITEVPDRSRLRRGQTPQAFKLSTIRKAYEIAAGDPNFQATDDCSVVLRYLPDVPIYVVAGDEYNMKVTQPVDVFIADKLFQLASTAAPVQADEAAYRELLSGKTLVVFGGSYGIGADIAALAERYGAKVYALGRSTTGTHVENPEHVDDALSKAYSATGRIDYVINTAGVLRIGKLAETDNTTIQEALNVNYLAPVQIARASYKYLAETKGQLLLYTSSSYTRGRAEYSLYSSTKAAMVNLTQALSDEWAGDGIRVNCVNPERTATPMRTKAFGSEPAGSLLSSEAVARTSLDVLLSELTGHVIDVRQQDPTREASAAGSGFEQALASVLDRQEDV

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Crispr_ID: NZ_CP048397_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_5

3173302-3173516

Orphan

Consensus_repeat	Method
ACGGACCCGCTCGGCGCGACCACGCG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP048397_5

>merge|NZ_CP048397|5|3173302-3173516|CRISPRCasFinder
ACCGACCCGACCGGCGCCACGACCCGCTTCCTGTACGACGGCCGGGGCGCCCCGCTCGCGCTCACGGACCCGCTCGGCGCGACCACGCGGGTGCGGTGCGACGCGGCGGGGCTGCCGGTCGAGACGACGGACCCGCTCGGCGCGACGACGCGCCTGGCGCGTGACGCGTTCGGCCGGATCGTGACCCTCACCGACCCGCTGGGCGCGGTCACGCG

>NZ_CP048397|5|5|3173302-3173516|CRISPRCasFinder
ACCGACCCGACCGGCGCCACGACCCG	CTTCCTGTACGACGGCCGGGGCGCCCCGCTCGCGCTC
ACGGACCCGCTCGGCGCGACCACGCG	GGTGCGGTGCGACGCGGCGGGGCTGCCGGTCGAGACG
ACGGACCCGCTCGGCGCGACGACGCG	CCTGGCGCGTGACGCGTTCGGCCGGATCGTGACCCTC
ACCGACCCGCTGGGCGCGGTCACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164251401.1\|3161157_3162729_+\|Na+:solute-symporter	unknown	unknown	gnl\|CDD\|271371
NZ_CP048397.1\|WP_147878551.1\|3159401_3160262_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP048397.1\|WP_164251412.1\|3177122_3177716_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP048397.1\|WP_164251416.1\|3181099_3181618_+\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP048397.1\|WP_164254568.1\|3180157_3180409_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NZ_CP048397.1\|WP_164251399.1\|3158346_3159066_+\|GPP34-family-phosphoprotein	unknown	unknown	gnl\|CDD\|377552
NZ_CP048397.1\|WP_164251407.1\|3170395_3172510_+\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143
NZ_CP048397.1\|WP_164251409.1\|3175692_3176244_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251414.1\|3179869_3180103_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP048397.1\|WP_164251403.1\|3164512_3167128_-\|bifunctional-FO-biosynthesis-protein-CofGH	unknown	unknown	gnl\|CDD\|236422
NZ_CP048397.1\|WP_164254569.1\|3181736_3182042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251404.1\|3167213_3167906_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251411.1\|3176517_3176952_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251410.1\|3176312_3176516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251400.1\|3160481_3160688_+\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP048397.1\|WP_164251406.1\|3169318_3170170_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP048397.1\|WP_164251405.1\|3167977_3169315_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_CP048397.1\|WP_164251413.1\|3179058_3179889_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP048397.1\|WP_164251402.1\|3163153_3164269_-\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP048397.1\|WP_164251415.1\|3180784_3180985_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164251401.1\|3161157_3162729_+\|Na+:solute-symporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.71475e-144
NZ_CP048397.1\|WP_147878551.1\|3159401_3160262_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.10656e-12
NZ_CP048397.1\|WP_164251412.1\|3177122_3177716_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	5.35692e-07
NZ_CP048397.1\|WP_164251416.1\|3181099_3181618_+\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	3.23035e-40
NZ_CP048397.1\|WP_164254568.1\|3180157_3180409_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	0.00788427
NZ_CP048397.1\|WP_164251399.1\|3158346_3159066_+\|GPP34-family-phosphoprotein	gnl\|CDD\|377552	pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34). This family consists of several eukaryotic GPP34 like proteins. GPP34 localizes to the Golgi complex and is conserved from yeast to humans. The cytosolic-ally exposed location of GPP34 predict a role for a novel coat protein in Golgi trafficking.	9.90587e-44
NZ_CP048397.1\|WP_164251407.1\|3170395_3172510_+\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	1.62914e-10
NZ_CP048397.1\|WP_164251403.1\|3164512_3167128_-\|bifunctional-FO-biosynthesis-protein-CofGH	gnl\|CDD\|236422	PRK09234, fbiC, FO synthase; Reviewed.	0
NZ_CP048397.1\|WP_164251414.1\|3179869_3180103_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	2.35491e-17
NZ_CP048397.1\|WP_164251405.1\|3167977_3169315_-\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.04443e-06
NZ_CP048397.1\|WP_164251400.1\|3160481_3160688_+\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	1.30809e-14
NZ_CP048397.1\|WP_164251406.1\|3169318_3170170_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.02897e-109
NZ_CP048397.1\|WP_164251413.1\|3179058_3179889_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.59527e-11
NZ_CP048397.1\|WP_164251402.1\|3163153_3164269_-\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.81135e-42

>NZ_CP048397.1|WP_164251407.1|3170395_3172510_+|PrsW-family-intramembrane-metalloprotease
MAAASVWCVLQLLLLSWPARTVGWPTVLLAFGIGAYGCGVLSVLIETAVTRQLAAADETSMRTVMDTVMWTTAPAAEELLKILPLALAAWALRGRVQWGLTDFVVLGAAVGVGFGLLESVLQFAFAPDVRVRPIESAGGWSVATRLFEAPFVSGFPELLGHWFPAAVGTLELGSATATVPVDNHVAWSALGGLAVGLVVCGHRWWVRAAGLLPLLAAVGLHTAVNYIAALPSAHGTPREWYDRIVASGLWVVLGCLVAAVVWDVRTRRAGRSRETGVRLRGDREGAGGEGGGGSGAALLNYALLRAPWTTLIALGYARRRRALFQVTTHPRARPEHVAALRDELTARTAELDATATPEAWRGASIREAWRRVRARGAGRPPWWEKAVLILGLALLIPSALLAATFAFEETKGLEEYFTEGRGWQLLIGCGLAGLLLAAFRLVMTWRSLPLVRTLPAAEPHATALLRMGLVAGSLCAGALLLSRADTIAENGKVLPDHLIVSFVLEKFLDVAPALILTLLMFALPFALPLGAATGGLGFLLPELLTMAAGRALAPLAARAAAQVGARLAGRGALAWARNALRSGRGRYTRRSDEIRRGPTDPVDMATGRMFLPVTDVELPGVLPLVFSRRVDSGYRGGRWFGPSWASRRRTSGWSSTSTARCSSRRTVCCWRIRTRRRAGPPSCRRSPRGARGGHWRGAPTARTR
>NZ_CP048397.1|WP_164251406.1|3169318_3170170_-|ATP-binding-cassette-domain-containing-protein
MFRRRSSTGRARSAEALRLAGVSKVYGSGDSAVTALDGVSLSLPAGSFTAVMGPSGSGKSTLLQCAAGLDRPDSGQVVVDGEEMTGGTEAALTKFRRRRIGFVFQRYNLLPTLTVAQNTVLPLRLAGRRVDKDHARDILTQVGLGDRLTHRPDQLSGGQQQRVAIARALVTEPAVILADEPTGALDIRSARDVLLLLQQTVRVHGRTVVMVTHDPVAASYADTVIFLADGRLAGHIDHPTVDTVAERLAHLGDTLNRPAERSADQPSAAEPSARSAGNTYAGV
>NZ_CP048397.1|WP_164251405.1|3167977_3169315_-|FtsX-like-permease-family-protein
MFTLAMRSVRQRPGRFIATLLSTFLGAVVVMTFNSMHDTASAPGIDALSKETLTIAASVVGGYGTFLVFFAVASTLTVNVRQRGEEIALLRRSGATPAQIKRMVVFEAVAVAVVGTVLAFGPAMLGGDRLLVLFKDTDQVTQGVDFSFGPIAMASGFAITLVASVGAAFLAVRRVAKVAAGGAKPRGRGKNLAGAAAFVLGIGGVFSTFALDKSDVALMAGPVYGAILLAAGFAILSPAILRLVLGTLARPITALTGASGYLTVHNMRRRASELSGVLMPLILFIGIACATLYMQAIQSDAAKASGIAPTGEDKNVETLNYVVVGIIVVFSCIMLINSLYAATTYRTREFGQQRLAGATPPQVLGMIALESVILTVTGVFFATVAAVAGVVPFSMVRVDTATPDQDLGIWLVVVGIGAVATIATSVGTAYRGLRTPAVEAVTLAA
>NZ_CP048397.1|WP_164251404.1|3167213_3167906_+|hypothetical-protein
MNDARDLAHSAGSPGPTGDEVGGAGGGVLRGVGIGCGVLVAVPVLLVLGFLVTYSVQRGTPEEYERVDPQAMMTRIGDVSRESYEVLGFETAAGSDASAGLCYPGGLESMADEPVDGAYSLSHRWSVDDVPESGAASALKRLHGHLGDGGWDIDSYESDAGAAYGLELRVSRDGPSDDGGDIRAVFEWRDHRGRFEGGVHAPCAYDPGAGRGTWSATDAGAEVEPPRLRP
>NZ_CP048397.1|WP_164251403.1|3164512_3167128_-|bifunctional-FO-biosynthesis-protein-CofGH
MLGHMTTSATAPSAPTANAMRRALKRAREGVALDAAEAAVLLQARGDDLKDLAASAARVRDAGLEAVGRPGVITYSRKVFIPLTRLCRDKCHYCTFVTVPGKLRRAGHGMFLSPDEVLAIAREGAEMGCKEALFTLGDRPEDRWPEAKEWLAAEGYDDTLAYVRAMAVRVLEETGLLPHLNPGVLGWTDFQRLKPVAPSMGMMLETTATRLWSEPGGPHHGSPDKEPAVRLRVLEDAGRSNVPFTTGILIGIGEDYEERADSLFELRRTARAYHGIQEVIVQNFRAKPDTAMRAMPDAELEELAATIAVARHLLGPAARIQAPPNLVDEEYALLIGAGIDDWGGVSPLTPDHVNPERPWPHIDQLAERTAAAGFELRERLTIYPEFIARGEPWLDPRVMPHVRALADPVTGLAREDVKPAGLPWQEPDEGFTATGRTDLHRTIDTEGRTGDRRDDFDHVYGDWDALREAAAPGMVPERIDTDVRQALTQAAADPTKLTDDEALALLHADGPALDALTRIADELRREVVGDDVTYIVTRNINFTNVCYTGCRFCAFAQRRTDADAYTLSLDQVADRAAQAWDVGAVEVCMQGGIHPDLPGTAYFDIARAVKERVPGMHVHAFSPMEVVNGASRTGMSIREWLTAAKEAGLDSIPGTAAEILDDEVRWILTKGKLPTATWIEVVETAHSLGIRSSSTMMYGHVDQPRHWLGHFRTLAGMQRKALEAGREGFTEFVTLPFIHTNAPVYLAGIARPGPTTRDNRAVMAMARLLLHPYITNIQTSWVKLGTEGAAEMLRSGANDLGGTLMEETISRMAGSGYGSYRSVKDLVAIADAAGRPARPRTTLYGEVPEERVRAATASDGHLPELLPLLPE
>NZ_CP048397.1|WP_164251402.1|3163153_3164269_-|ADP-ribosylglycohydrolase-family-protein
MNRPATAIWGRAEQQDFRSRVRGCLLGGAIGDALGAGVDTLTLDETRTAHGAEGVTDFAQAYGRRGAVAAATQLTLFTVDGLIRAQVRRDTGAWHPPTDVHRAYLRWAATQSDWGPDERRKDNGWLAQEEWLYARRDPSVSCLTGLGDELMGTLDKPKNPTARDAGAVVRSAPFGLLVGWEPQLVCQLAVECAAQTHGHPTAYLSAGAFAVIVHGVARGDSVDAAVQRSLALLTQHPGHQPVTDALGQALGAVRQGIPTPGRVSVLAEGGAAEDSLAVAVYCALVGEDVRHGLRLAVNHDGPSSATGALCGALLGAMHGETALPPAWLAELEGRATLLEIADDFAMEMTQGPALHGPSITSSGWLTRYPRG
>NZ_CP048397.1|WP_164251401.1|3161157_3162729_+|Na+:solute-symporter
MNSLDWTVLIGYFGVMVAIGVWSHKRVGDVHDYFTAGGKMPWWLSGISHHMSGYSAVMFTGYAAIAYTYGVTSYVTWSFPIAIGIAIGAKLFAPRLNRVRSRLRVSSPLEYLKNRYNLPTQQALAWSGVLLKIVDVGAKWAAIATLLSVFTGVSLNMGILITGAVTAVYCTVGGLWADALTELGQFIIQFVAGIAMLVAVMAELGGFSSLWNVWDEPELQGHTEPLAGPYMMVFLIAYLFIKTFEYNGGMWNQAQRYMATDSAKSATRSGVLSAVLWLIWPLVLFFPMWVAPVLIDTDVPADSYALMAEQLLPHGLLGLVIVGFFSHTMAMCSSDANAIAAVVTRDIMPAVSRRAREWDTRVGLLAARWTTLLFLGLSMAIATQVNSPFFGDIITVVIKWVAGLMGPIAIPLMLGLLPWFRKSGPTAALISWAVGLVTFWLVNYPISWNVDGGVPLQYQVSIPLAVSLVLYVVIGFVKPEDTPERDAVLEKINDDDGSDGCAAVPGPAGPGDAKQLGREGASG
>NZ_CP048397.1|WP_164251400.1|3160481_3160688_+|DUF397-domain-containing-protein
MVSKRVSLTQWTKSTYSANGDCVEVRALPATAVSVRDSKNLGGPVLNFAPKAWETFVADSVGTSATTL
>NZ_CP048397.1|WP_147878551.1|3159401_3160262_+|helix-turn-helix-domain-containing-protein
MASNVNPTVRRRRLGQELRRLREVKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDNRIVESLMQMAKDSRQQGWWHAFGDIPYSVYIGLETDAASLRVYESLIVPGLLQTREYAQAVIEGMWPEETPGDVEKRIQIRLKRQDRLTDPHDPLRFWAVIDEALLRRVVGSPQIMAAQLGHLAQLSAQPHVTLQVVPYDVGAHPGMYGKFAILEFQEAADATVVYLEGVTSDLYLEKANDVQSYTVMYEHLRAKALSAEQSREFINKIAADYAAS
>NZ_CP048397.1|WP_164251399.1|3158346_3159066_+|GPP34-family-phosphoprotein
MGRSRRTIPEELLLLALDPATGTTAQPQSLDLGLAGAQLVELALAGRIAPDGDRIAVVMPRPTGDPTLDSALELLRRRGSPVRAVHWIGGPRLGLRQIYLSHLERCGMVHAVAGQMCGVLPTTRYQATETAISRDIRARLDSAIRTGVPPDPRTAALAALAHAVGLGKHLYPGNEGRSSRSRLRDLIRHDPMGGLVAHAVMDVQNGAAAQPRRNPAPGGRPPAVPMQPHRGSMARVAAH
>NZ_CP048397.1|WP_164251409.1|3175692_3176244_+|hypothetical-protein
MTIITDLLTDIRSKLLDLDRPVVSDLVHPGQPPDELERLFGPTPETVRDWFSWCDGTRRRPGQTVGQSAFIPGYIFPSAGEAAEIRRAGHADLDTMGQWLPLLVNASADLYAAIWQETQFLGVAGVLESEPTEIEYMTIEEMLRVHSAAFAEGAYFVDGGELEVDDDAFDQIFLRVTGRAPLF
>NZ_CP048397.1|WP_164251410.1|3176312_3176516_+|hypothetical-protein
MPREELISLVSRIMSGGDPEEVGEQLMVRLARNLIDPQVSDYIFYSAPPLSAEEVVDKALAYRPIAL
>NZ_CP048397.1|WP_164251411.1|3176517_3176952_+|hypothetical-protein
MKLTVQAAEFEAECTSCRHPCRYWAVQLVSRGRLGWELNWSCLGCGIEADDVNSGPAPEYIRGRLIERYGSTHVRGGGTDAHGGRVLKVFRDVFGWSVQDAKQAATELTTTGWRGTQVEVSLVAHLLQESGVEVTDGEDEQPSG
>NZ_CP048397.1|WP_164251412.1|3177122_3177716_+|DinB-family-protein
MTSSAPVTRDLLETFDDVRTRIFARLDGLTDAEYLWEPVASCMTLRADADGVFRADPRPTGDVHPAPFTTIAWRIWHIGADCLRGYGRFFEDQSLSGDDRHLWPGTATEGVQVVADDWSRFRTQVESLGDDRLLRPMGPIADPYAHESYLLLALHALDEAAHHGAELGVLRDLYRHGFAKEQRENRDEVGPPDTSSP
>NZ_CP048397.1|WP_164251413.1|3179058_3179889_+|helix-turn-helix-domain-containing-protein
MAIEDNPESRTKYGEELRERRERAGLTQEALSQRAVMSRTHIAHIEAGRRRPDIADARRLDQVLKTGGLFERFLPTLDGKKVAEHFEEALEFEQQASVIREYAPKLVPGILQTEAYAREVLGSGSPPKSAEERDKLLVTRLARARILDTFDSPVVWTMLDEAVLRRPIGGPATMCEQLRHIVALGESRRIRVHVLPFEVGAHALLEGFVSLMWFDDLPPIAYVEGLKSGRVWELPSVVRQCQEVYDHALGDALSHRKPLALIRSVAEDYEHDAQQQ
>NZ_CP048397.1|WP_164251414.1|3179869_3180103_+|DUF397-domain-containing-protein
MTRSSSKHSISDASVLPVWRKSSYSGGSSGECLEVSDAFAACVPVRDSKVPHGSALLFAAPVWTPFITAVKSDGFNR
>NZ_CP048397.1|WP_164254568.1|3180157_3180409_+|pentapeptide-repeat-containing-protein
MAGAGLTAADLQDACLSGADMRGCHRGLAGCGSRVLIRKARAPTSWRRPTPAKWTGVCSSSTPSVSTSGHCYRTCSWTILIRT
>NZ_CP048397.1|WP_164251415.1|3180784_3180985_+|hypothetical-protein
MASHTPHAHREHPIELLIQRAAECGLLSAVLDLVQLLPENGDFNRRPSVAFDGPWLALTGFGRSPW
>NZ_CP048397.1|WP_164251416.1|3181099_3181618_+|DUF664-domain-containing-protein
MNSTDDRVGPPHLGGERETLRAFLDYHRATLAMKCAGLSDDELRQQSMAPSTLSLLGLVRHLAEVERDWFRRVFEDNGAPMLWSPPGEIDFQAAYDASGSSRSEAFTAWEAEVENSRRVERAAQSLDLTGHQPRWGEDVSLRMVMVHVLLEYGRHNGHADLLREGVDGTVGA
>NZ_CP048397.1|WP_164254569.1|3181736_3182042_+|hypothetical-protein
MPISTRLGRRIRHDFPEPGSAPEIMRMLDELPDTAGYDAECFRSERPQAAMVPLAQESAESARRFREAVQLALTADWRGLPVAAEPAHDDRPDRLRAELGP

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Crispr_ID: NZ_CP048397_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_6

3902002-3902094

Orphan

Consensus_repeat	Method
TCGTCCTCAAGCGCCGGACGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_6

>merge|NZ_CP048397|6|3902002-3902094|CRISPRCasFinder
TCGTCCTCAAGCGCCGGACGGGCTTGAGCTGCCCGCCGGGCGGGTTGGGACGACGCCGGCCGGTGGTGGGTCGTCCTCAAGCGCCGGACGGGC

>NZ_CP048397|6|6|3902002-3902094|CRISPRCasFinder
TCGTCCTCAAGCGCCGGACGGGC	TTGAGCTGCCCGCCGGGCGGGTTGGGACGACGCCGGCCGGTGGTGGG
TCGTCCTCAAGCGCCGGACGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164251889.1\|3895138_3895963_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NZ_CP048397.1\|WP_164251888.1\|3893756_3895112_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP048397.1\|WP_164251893.1\|3899057_3900041_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238042
NZ_CP048397.1\|WP_164251894.1\|3900102_3901956_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|271321
NZ_CP048397.1\|WP_147873555.1\|3891906_3892806_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP048397.1\|WP_164251887.1\|3893082_3893760_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224715
NZ_CP048397.1\|WP_164251899.1\|3909806_3911984_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP048397.1\|WP_164251891.1\|3897220_3897715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP048397.1\|WP_147873327.1\|3902160_3902379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP048397.1\|WP_164251892.1\|3897711_3898956_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380809
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP048397.1\|WP_164251897.1\|3907177_3907681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP048397.1\|WP_164251890.1\|3896140_3896953_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP048397.1\|WP_164251886.1\|3890931_3891750_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349980
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164251889.1\|3895138_3895963_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	9.62085e-25
NZ_CP048397.1\|WP_164251888.1\|3893756_3895112_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	6.84047e-34
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	5.18693e-68
NZ_CP048397.1\|WP_164251893.1\|3899057_3900041_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	9.44407e-09
NZ_CP048397.1\|WP_164251894.1\|3900102_3901956_+\|redoxin-domain-containing-protein	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	5.69086e-163
NZ_CP048397.1\|WP_147873555.1\|3891906_3892806_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.90746e-53
NZ_CP048397.1\|WP_164251887.1\|3893082_3893760_+\|FCD-domain-containing-protein	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.5375e-41
NZ_CP048397.1\|WP_164251899.1\|3909806_3911984_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.18235e-52
NZ_CP048397.1\|WP_164251891.1\|3897220_3897715_-\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	1.0504e-32
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00381456
NZ_CP048397.1\|WP_164251892.1\|3897711_3898956_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.52e-29
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	gnl\|CDD\|380809	cd20239, PFM_aerolysin-like, pore-forming module of aerolysin-type beta-barrel pore-forming proteins; uncharacterized subgroup. Generally, pore-forming proteins (PFPs) are secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores detrimental to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel. Many of this family are bacterial toxins. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00301176
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.14581e-16
NZ_CP048397.1\|WP_164251890.1\|3896140_3896953_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.14548e-117
NZ_CP048397.1\|WP_164251886.1\|3890931_3891750_-\|RNA-methyltransferase	gnl\|CDD\|349980	cd18107, SpoU-like_AviRb, SAM-dependent rRNA methylase related to AviRb. AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	5.02363e-78
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0

>NZ_CP048397.1|WP_164251894.1|3900102_3901956_+|redoxin-domain-containing-protein
MNDAAPSPAPQPAPAPRRRARVRAPELIGKGGWLNTGGNELTLADLRGRIVLLDFWTFCCINCLHVLDELRELEQKHSDTVVTIGVHSPKFVHEAEHTAVVDAVERYEVHHPVLDDPELATWKQYAVRAWPTLVVIDPEGYVVAQHAGEGHAHAIEKLVEELETEHAAKGTLRRGDGPYVAPEPVATDLRFPGKAVVLASGNFLVSDSTRHQLVELAADGESVVGRVGTGQRGFGDGPDAAFNEPQGLAPMPNGRIAVADTVNHAVRAYDPVSGVVETLAGTGSQWWQGSPAHGPALDVALSSPWDVAWWNDRLWIAMAGVHQLWTYDPATGTVRVAAGTTNEGLVDGPAAEAWFAQPSGLAATGDRLWVADSETSALRYVERDGDGYAVRTAVGTGLFDFGHRDGPAEQALLQHPLGVTALPDGSVAVSDTYNHALRRYDPATGEVTTLATDLREPSDAVLVGDDIVVVESAGHRLTRLRLPEEAVRVESVAHRTQRAATDVAPGALRLDVVFEAPKGQKLDARYGPSTRLLVSATPPELLARGAGAGTELGRELVLADGVTEGVLHVSAMAASCDDAPETEYPACHVHQQDWGVPVRVTPEGTGRLGLVLAGLDA
>NZ_CP048397.1|WP_164251893.1|3899057_3900041_+|helix-turn-helix-domain-containing-protein
MGWWQIDADTLAGSRFVISPLAETVASLKALERGTAAHAGAHPGERAWLDAHLPAYRERQAADPLIALLVRSAFGRTWNADFITPTPSGDRDGEPSFEEELVRIRATPPERARDDLLLSLDGPLPARLHRSDLPERAAAVLEWVWAEAVLPYWPRRRRLIEADVVARTAQLSQGGWASALSAMRPGMRWLGGNRLQINTRGGPSQVIPGVRLMFVPVTPHTGWVSWDADRYAVVYPCAGALADTGRARVPEPLRALLGPARAGVLVLLGAPKSTTQLVALTGQGLGSVGRHLKVLLDAGLIRRRRAGRSVLYFRTEAGEALVRAGDP
>NZ_CP048397.1|WP_164251892.1|3897711_3898956_-|MFS-transporter
MRTYRELFRTKEFTPLFLTSAAQVAAQTVSGLALGTLVFHATGSPLLSALAMFGPSLAQVIGATTLLSAADRLAPRATLTTVASVFALGTAATALPGLPIAAALAVVLGLGVVSALGGGVRLGLLNEILSTEGYLLGRSTLNMSAGLMQIGGFATGGVLLTVLSPRGTLLTGAALYLTAAITARLGLSRRPPRATGRPSVSATWRNNALLWASPPRRRVFLGLWVPNGLVVGCESLYVPYAPQHAGILFAAGAAGMLTGDILIGRFVPRRRRTHLAVPLLLLLAAPHLIFVLGPPLPLALAAVMLATVGYAASLVLQERLMELTPEALSGHALGLHSAGMLTMQGVCALLAGAVAELTSAATGITVLAAASLTVTLALTRGLRGGTGAAGSVVRTRAGDAVPPSPGAPVGTDPA
>NZ_CP048397.1|WP_164251891.1|3897220_3897715_-|hypothetical-protein
MKYLVRDKIFAIGDDYWIEDERGRQAFLVDGKALRLRDTLELKDPQGRVLVTLRQKLLSLRDAMTLERDAESLATIRKKKLSLLRNHYRVTLADGTELDVSGRILDREFAIEYDGELLAHVSRKWFRMRETYAVNVIRDDADPSLLIAVAVCVIRMAEKEHEEG
>NZ_CP048397.1|WP_164251890.1|3896140_3896953_+|carbon-nitrogen-family-hydrolase
MRASLIQIAVDSDESVNSRRERAASLVREQRGADLVVLPELWPVGAFAYESFATEAETLDGPTFRAMSEAARDAGVWLHAGSIVERAPEAVLDGAADLYNTALVISPDGVLARSYRKIHRFGFDKGEATLMGAGDELATVTLPDAVLGLATCYDLRFPELFRGLLDEGAQVFVVPAGWPARRRAHWTLLAQARAVENQSYVLACSTAGTHAGVEQSGHSIVVDPWGEVLAEAGPGEEVLTVDFDPSKVETTRDQFPVLKDRLLGVRAPRR
>NZ_CP048397.1|WP_164251889.1|3895138_3895963_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTVHPSLQTYADAWSHSIEAIAELVQPLVEGEWNRRTPCPGWSVRDIVSHVIGLECEMLGDPRPIHTLPRDLYHVQSEISRYMEMQVDVRRHHTAPEMTSELEYTIIRRNRQLRNENRAPDAMVRAPLGTEQTLEQAMRNRAFDIWVHEQDLRTTLSRPGNLDSAGALVTRDVLLEALPKVVAKDAGAPPNTAIVFDVHGPVEFLRTVRVDADGRGTIDGSPSLGPAVTLALDWETYFRLACGRVRAAAVPDRIKTDGDTDLAAAILREFAVTQ
>NZ_CP048397.1|WP_164251888.1|3893756_3895112_+|MFS-transporter
MSTGPSGPPGPPGPSGPSGRGPVLSLPGDPPGGRRAVAVWSVGVAVYFVAVIFRTSLGVAGLDAADRFDVNASALSTFSILQLLVYAGMQIPVGLMVDRLGTRRVLTIGVTLFTVGQLGFALAPSYGMALAARALLGCGDAMTFIAVLRLGAHWFPARQGPLIAQFTGLFGMAGNLVSTLVIARLLSDLGWTTTFVGSSMAGVVVLLLMLFFLKDHPEGHEPPPSEHAGASYVRRQIAESWREPGTRLGLWVHFTTQFPAMVFLLLWGLPFLVEAQGQSRATAGDLLTLIVLVNMVIGLVYGQIIARHHAARAPLALGTVVVTALVWASTLAHPGPHAPMWLLITLCVVLGACGPASMIGFDFARPANPPARQGTASGIVNMGGFVASMTTLFAVGVLLDATGGNYRVAFSSVFVLEALGIVQILRLRARTARRERERLVASRVEAVHVPA
>NZ_CP048397.1|WP_164251887.1|3893082_3893760_+|FCD-domain-containing-protein
MPAAPAASSPVAPVKQPPAADRVYSHIKQGVLDRHYQGGTLLTEGELAEAVGVSRTPVREALLKLEVEGLIKLYPKKGALVLAVSAQEIADVVETRLLVEEFTARRAVPASARLVARLEELLEEQRRLADEGDLAAVAVTDRCFHAEIVRNAGNEILSKLYDQLRDRQLRMGVAVLEAHPERVRTSITEHAELLEAIRAGDAEAAARCVRAHVSRVKVLIRGEAR
>NZ_CP048397.1|WP_147873555.1|3891906_3892806_-|D-alanyl-D-alanine-carboxypeptidase
MLTGTALVAPTTMAAESAPTAAAALPTLSAKGAFLLDDTTGAKRYGKNADIRRQMASTTKIMTAAVVLNTKGIDLNRQVTIKQTYRDYVVREGASTADLRTGDKVTIRQLLYGLMLPSGCDAAYALADAIGTGSTVAARTKSFISKMNAKATELGLKNTKFDSFDGISQAGDNYTTPRDLATIADYAMNSSTLRTVVKATSYKTTATTSTGGTRTYTWYNTNQLLGSYSGAFGVKTGTGTAAGPCLIFAATRNGKTHIGVILNGTDRYTDAAKLLDYYSGASAAKTMKLRQLPAGAERD
>NZ_CP048397.1|WP_164251886.1|3890931_3891750_-|RNA-methyltransferase
MAGQRITTRNARFQQWHALLANRNKRKRQGEFLVQGVRPITMAVEHGWNVRALLYDASRPLSRWAEELLRGITTDRVAMAPELLAELGERTDGAPEVLAVVEMRPDDLSRIPVHDDFLGVLFDRPTQPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRATTGSLFALPVVRSPSHHEVAKWLAEERAAGRPVAVVGTDERGEADVDRFDLTQPVLLLIGNETTGLSTGWRELCDHVLSIPMSGSASSLNASNAATVTLYEAARQRRGA
>NZ_CP048397.1|WP_147873327.1|3902160_3902379_-|hypothetical-protein
MGIGGCIALIAVGAILTFATDWEAESVNLDLVGVILMAVGMIGIATFTSIAKRRRAVVTPPTVIERDHHQGM
>NZ_CP048397.1|WP_164251895.1|3902468_3903773_-|M18-family-aminopeptidase
MSTPARFDRGHTDDLMTFLAASPTPYHAVANAAERLEKAGFRQVLETDAWEGTTGGKYVLRGGALIAWYVPEGAAPHTPLRIVGAHTDSPNLRVKPLPDTGAYGWRQVAVEVYGGPLLNTWLDRDLGLAGRLSLRDGTHRLINVDRPLMRVPQLAVHLDRGVNTDGLKLNPQRHMQPIWGLGEAGEGDLIRFVAEEAGLDASDVTGWDLMAHSVEPPAYLGRDRELMAGPRMDNLLSVHAGTAALAAVAGSAASGTALPYIPVLAAFDHEESGSQSDTGADGPLLGTVMERSVLARGGSYEDRARALAGTVCLSSDTGHAVHPNYAERHDPTHHPRANGGPILKVNVNMRYATDGGGRAVFAAACERAGVPWQTFVSNNSMPCGTTIGPITAARHGIKTVDIGAAIVSMHSARELCGADDPFLLANALAAFLEG
>NZ_CP048397.1|WP_164251896.1|3903890_3905717_-|acyl-CoA-dehydrogenase
MGHYKSNLRDIEFNLFEVLGRDKLYGTSPFAEMDVETARTILAEVTKLAESELAASYADADRNPPVFDPETNTAPVPASFKKSYQAFMDSEYWRLGLPEEIGGTTSPRSLIWAYAELLLGANPAIWMYTSGPAFAGILFEEGNEAQKKIAEIAVEKQWGSTMVLTEPDAGSDVGAGRAKAVEQEDGSWHIEGVKRFITSGEHDMSENILHYVLARPEGAGPGTKGLSLFLVPKYEFDWETGELGERNGVYATNVEHKMGLKASNTCELTFGDRHPAKGWLIGDKHEGIRQMFMIIEFARMMVGTKAIAALSTGYLNALEYAKERVQGPDLSQFMDKSAPKVTITHHPDVRRSLMTQKAYAEGMRALVLYTASLQDEIAKKEAEGEDVKAQHALNDLLLPIVKGYGSEKSYEQLAQSLQTLGGSGYLQEYPIEQYIRDAKIDTLYEGTTAIQGQDFFFRKIVRDQGQALNTLSEEIKQFLAVGTGGAELAPARDALAKAAVDLEAIVGKMLTDLTATAEDVKNIYKVGLNTTRLLMASGDVVVGYLLLRGAAVAVEKLETASAKDVPFYQGKIAAAKFFAGNVLPGVSVERAVAESVDNSLMELDEAAF
>NZ_CP048397.1|WP_147873330.1|3905890_3906352_+|SseB-family-protein
MYGYDQNAGAQQQYAPPQQPMGGGYGEQPLYPEPSPPSLADAVRAFTTGSLSAEDFQQIFATSKVYCPRGDNPGFLALHNTQQPVIPMFSTLKELRRYAGKESKYFVITGAEVIDLLPTGYGFVIDMEGDHRMVFDAKAVEQMVDFAMRRMYG
>NZ_CP048397.1|WP_164254629.1|3906452_3907013_-|hypothetical-protein
MALAPSSAQAADEQPTIRELLDKCDNGTDLCVFHPSGPPEVSMGEAHQVGDSAFNCTADLQRSTVGWSDTTGESNSVGVSLSAEVGFAEVFKVSIETNYNHTWESSHTESEQTNVDVRPGEVGWVTREAQMQRVSGQYELHFEDRFYGHYYWYVPFDATGPLPDAPSTKTQHTRPMTDQERSEHCG
>NZ_CP048397.1|WP_164251897.1|3907177_3907681_-|hypothetical-protein
MSAAQTRFARLTGVGTAVLLATGALTAPSAVADEKPHCAVDVVTNAETCFATLPEALDAARSGQGNGPRTMAGDVIQGTFFDDPQFGGASLTVYGTAPCEKDGWVNYQYDLPDDWKNRISSVQPWANCWLWLYPEPGLGGDRDGPFDENAADIGGLMNDRTQSIGFS
>NZ_CP048397.1|WP_164251898.1|3907969_3908923_+|pirin-family-protein
MPAVTVENPLTLPRVTAAADAVARPVLAVSTAPGGFEGEGFPVRRAFAGINYQHLDPFIMMDQMGEVEYAPGEPKGTPWHPHRGFETVTYLIDGTFIHQDSNGGGGTIRNGDTQWMTAGSGLLHIEAPPESLVTSGGLFHGLQLWVNLPAADKMMDPRYQDIRGGQVQLLTSHDGGALLRVIAGSLDGHEGPGITHTPITMIHATLRPGAEVTLPWREDFNGLAYVLAGRGSVGTDRRPVHTGQTAVFGAGSSLTVRADESQDSNTPDLEVVLLGGRPIREPMAHYGPFVMNSHAELKQAFEDFQAGRLGTVPAGTE
>NZ_CP048397.1|WP_164251899.1|3909806_3911984_-|SpoIIE-family-protein-phosphatase
MRTEDVLAAIATGLWRWDNAAGLVTLDAEAARLFGLPAESTVLSEAAMRARLHPVDWNETYGIIRLAVAEGTLAEAHIRVVGEDGQVIRTIRSRSKPLATEREYGEDYELVGTVQEIVHPHAGALTGRSPVAGDWRRSREAFLLDAGRALAEARSTAEVLRVAASLSMPGFSPDGLAVFGVEGERLTVIGHHGHGDGAEGPFTDMSLSTDYPAAEVVRTGRAIYLATPKEYQDRYPATWPLVKRFERRSWAFVPLVVAGRTMGAWVAGFKHPVTFTPDERSVLTTVARMLAQALARAEVTETERELSLGLQRSMMPTLGPAIPNMSVAARYVPTGGGLQVGGDWYDIIPLPGGTKVALVIGDVQGHDVRAAGLMGQLRIALRAYAAEGHRPDAVLSRASRFLHGMYEFSTAQGPTHPDQSDDGEDSDYTVPRFATCLYMEVDPDSGTLDIARAGHPDPVIRSADGVALIRQTAGGLPLGIEADSDYPTTRVVLEPGDTLMLCTDGLIETGGHDMLSGWARLRPVLENTTDTSLEKLADALVEAVHGPGSHYTTGPLADRREDDIALLLLSRHSSPARRPPRRTVLTIAQAEPDQVADARHQLRELLHDWADEEQVDSAVLMLSEMATNVLVHTDGDAVLIAEAAGDRGKRRLRVEVADVSDELPHRRRPGELASSGRGLLLMEMLADAWGVDPRGEGKSIWFEIYEQNDTPLPSRPAEKLSPSGD
>NZ_CP048397.1|WP_164251900.1|3912174_3913938_+|aspartate--tRNA-ligase
MHRYRSHTCGELRASDVSTDVRLSGWLHNRRDLGGILFIDLRDHYGLVQLVARPGTPANEELSKLTKETVVRIDGKVSARGADNVNPELPTGEIEIEVTEVEVLGAAGPLPFTINTDDGVNEERRLEYRFLDLRRERMHRNILLRTAVISAIRHKMTTLGFNEMATPILTATSPEGARDFVVPSRLNPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDVEMSFVEQEDVFRPIEKMMTELFTEFGGGREVTSPFPRIPFRESMLKYGNDKPDLRAKLELVDISDVFEGSEFKAFAGRHVRALPVPDTAGQSRKFFDGLGDYAVEQGAKGLAWVRVGEDGSLAGPIAKFLTEDNVKVLTERLSLVPGHAIFFGAGEFGEVSKIMSAVRVEAAKRAGHFEEGVFRFCWVVDFPMYEKDEETGRIDFSHNPFSMPQGGLDDLETKDPLDILAWQYDIVCNGIELSSGAIRNHQPDVMLKAFEIAGYDRETVEHEFAGMLRAFRLGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPSELDETRLRELNIQLRKPVTK
>NZ_CP048397.1|WP_164251901.1|3914657_3915482_+|hypothetical-protein
MSYRSGPRPHGVAALLLAAGLLLGGCAGGFGGEGGSSVPQAVNGKGGNGGGEGTGGGRGRAVPGPAAEEQTEARVVRPREIPSLGPKTRSRIPEDSRQAVVVTGDAPDSNRAMLVLYERDPVEGWRSVSDPWPAHNALKGWTDDHRQGDLRSPIGVFGLTDAGGRLPDPGTRLPYDRGPAFTVDGVGFEGEPLAGSFDHVVAINYNRRPGTTPLDWTRPLGAGKGGGIWIHVDHGGPTQGCVSVPMGRMKELLRWLDPGKVPQVVMGDVSSLGR

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Crispr_ID: NZ_CP048397_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_7

3909645-3909817

Orphan

Consensus_repeat	Method
CCGGCGGCCGGTTCGTCCTCCATCGCCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP048397_7

>merge|NZ_CP048397|7|3909645-3909817|CRISPRCasFinder
CCGGCGGCCGGTTCGTCCTCCATCGCCGGACGGGCCGGGTCTGTCGGCCGGGCGGGGTCGGAGTGGCTCGGGCCGGCGGCGGGTTCGTCCTCCATCGCCGGCCGGGCTTGATCGGCCCGCCGGACGGGCTGATACGGCCCCCCCGGGGCGGCCGGTGCGCCGTCAATCGCCGG

>NZ_CP048397|7|7|3909645-3909817|CRISPRCasFinder
CCGGCGGCCGGTTCGTCCTCCATCGCCGG	ACGGGCCGGGTCTGTCGGCCGGGCGGGGTCGGAGTGGCTCGGG
CCGGCGGCGGGTTCGTCCTCCATCGCCGG	CCGGGCTTGATCGGCCCGCCGGACGGGCTGATACGGCCCCCCC
GGGGCGGCCGGTGCGCCGTCAATCGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP048397.1\|WP_147873341.1\|3917475_3918135_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP048397.1\|WP_164251893.1\|3899057_3900041_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238042
NZ_CP048397.1\|WP_164251894.1\|3900102_3901956_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|271321
NZ_CP048397.1\|WP_164251904.1\|3919931_3921710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP048397.1\|WP_164251905.1\|3921719_3922175_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_147873327.1\|3902160_3902379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP048397.1\|WP_164251897.1\|3907177_3907681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251892.1\|3897711_3898956_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP048397.1\|WP_164251902.1\|3915705_3917319_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380809
NZ_CP048397.1\|WP_164254631.1\|3919276_3919795_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP048397.1\|WP_164254633.1\|3925946_3926564_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251906.1\|3922784_3925787_+\|SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP048397.1\|WP_164251903.1\|3918131_3919253_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	5.18693e-68
NZ_CP048397.1\|WP_147873341.1\|3917475_3918135_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.10138e-54
NZ_CP048397.1\|WP_164251893.1\|3899057_3900041_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	9.44407e-09
NZ_CP048397.1\|WP_164251894.1\|3900102_3901956_+\|redoxin-domain-containing-protein	gnl\|CDD\|271321	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins. NHL repeat-containing protein 2 (NHLRC2) and related bacterial proteins; members of this eukaryotic and bacterial family are uncharacterized, the NHL repeat domain is found C-terminally of a thioredoxin domain. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	5.69086e-163
NZ_CP048397.1\|WP_164251904.1\|3919931_3921710_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	6.71601e-26
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00381456
NZ_CP048397.1\|WP_164251892.1\|3897711_3898956_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.52e-29
NZ_CP048397.1\|WP_164251902.1\|3915705_3917319_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	gnl\|CDD\|380809	cd20239, PFM_aerolysin-like, pore-forming module of aerolysin-type beta-barrel pore-forming proteins; uncharacterized subgroup. Generally, pore-forming proteins (PFPs) are secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores detrimental to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel. Many of this family are bacterial toxins. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00301176
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.14581e-16
NZ_CP048397.1\|WP_164251906.1\|3922784_3925787_+\|SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	9.70086e-43
NZ_CP048397.1\|WP_164251903.1\|3918131_3919253_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.56547e-39
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0

>NZ_CP048397.1|WP_164251898.1|3907969_3908923_+|pirin-family-protein
MPAVTVENPLTLPRVTAAADAVARPVLAVSTAPGGFEGEGFPVRRAFAGINYQHLDPFIMMDQMGEVEYAPGEPKGTPWHPHRGFETVTYLIDGTFIHQDSNGGGGTIRNGDTQWMTAGSGLLHIEAPPESLVTSGGLFHGLQLWVNLPAADKMMDPRYQDIRGGQVQLLTSHDGGALLRVIAGSLDGHEGPGITHTPITMIHATLRPGAEVTLPWREDFNGLAYVLAGRGSVGTDRRPVHTGQTAVFGAGSSLTVRADESQDSNTPDLEVVLLGGRPIREPMAHYGPFVMNSHAELKQAFEDFQAGRLGTVPAGTE
>NZ_CP048397.1|WP_164251897.1|3907177_3907681_-|hypothetical-protein
MSAAQTRFARLTGVGTAVLLATGALTAPSAVADEKPHCAVDVVTNAETCFATLPEALDAARSGQGNGPRTMAGDVIQGTFFDDPQFGGASLTVYGTAPCEKDGWVNYQYDLPDDWKNRISSVQPWANCWLWLYPEPGLGGDRDGPFDENAADIGGLMNDRTQSIGFS
>NZ_CP048397.1|WP_164254629.1|3906452_3907013_-|hypothetical-protein
MALAPSSAQAADEQPTIRELLDKCDNGTDLCVFHPSGPPEVSMGEAHQVGDSAFNCTADLQRSTVGWSDTTGESNSVGVSLSAEVGFAEVFKVSIETNYNHTWESSHTESEQTNVDVRPGEVGWVTREAQMQRVSGQYELHFEDRFYGHYYWYVPFDATGPLPDAPSTKTQHTRPMTDQERSEHCG
>NZ_CP048397.1|WP_147873330.1|3905890_3906352_+|SseB-family-protein
MYGYDQNAGAQQQYAPPQQPMGGGYGEQPLYPEPSPPSLADAVRAFTTGSLSAEDFQQIFATSKVYCPRGDNPGFLALHNTQQPVIPMFSTLKELRRYAGKESKYFVITGAEVIDLLPTGYGFVIDMEGDHRMVFDAKAVEQMVDFAMRRMYG
>NZ_CP048397.1|WP_164251896.1|3903890_3905717_-|acyl-CoA-dehydrogenase
MGHYKSNLRDIEFNLFEVLGRDKLYGTSPFAEMDVETARTILAEVTKLAESELAASYADADRNPPVFDPETNTAPVPASFKKSYQAFMDSEYWRLGLPEEIGGTTSPRSLIWAYAELLLGANPAIWMYTSGPAFAGILFEEGNEAQKKIAEIAVEKQWGSTMVLTEPDAGSDVGAGRAKAVEQEDGSWHIEGVKRFITSGEHDMSENILHYVLARPEGAGPGTKGLSLFLVPKYEFDWETGELGERNGVYATNVEHKMGLKASNTCELTFGDRHPAKGWLIGDKHEGIRQMFMIIEFARMMVGTKAIAALSTGYLNALEYAKERVQGPDLSQFMDKSAPKVTITHHPDVRRSLMTQKAYAEGMRALVLYTASLQDEIAKKEAEGEDVKAQHALNDLLLPIVKGYGSEKSYEQLAQSLQTLGGSGYLQEYPIEQYIRDAKIDTLYEGTTAIQGQDFFFRKIVRDQGQALNTLSEEIKQFLAVGTGGAELAPARDALAKAAVDLEAIVGKMLTDLTATAEDVKNIYKVGLNTTRLLMASGDVVVGYLLLRGAAVAVEKLETASAKDVPFYQGKIAAAKFFAGNVLPGVSVERAVAESVDNSLMELDEAAF
>NZ_CP048397.1|WP_164251895.1|3902468_3903773_-|M18-family-aminopeptidase
MSTPARFDRGHTDDLMTFLAASPTPYHAVANAAERLEKAGFRQVLETDAWEGTTGGKYVLRGGALIAWYVPEGAAPHTPLRIVGAHTDSPNLRVKPLPDTGAYGWRQVAVEVYGGPLLNTWLDRDLGLAGRLSLRDGTHRLINVDRPLMRVPQLAVHLDRGVNTDGLKLNPQRHMQPIWGLGEAGEGDLIRFVAEEAGLDASDVTGWDLMAHSVEPPAYLGRDRELMAGPRMDNLLSVHAGTAALAAVAGSAASGTALPYIPVLAAFDHEESGSQSDTGADGPLLGTVMERSVLARGGSYEDRARALAGTVCLSSDTGHAVHPNYAERHDPTHHPRANGGPILKVNVNMRYATDGGGRAVFAAACERAGVPWQTFVSNNSMPCGTTIGPITAARHGIKTVDIGAAIVSMHSARELCGADDPFLLANALAAFLEG
>NZ_CP048397.1|WP_147873327.1|3902160_3902379_-|hypothetical-protein
MGIGGCIALIAVGAILTFATDWEAESVNLDLVGVILMAVGMIGIATFTSIAKRRRAVVTPPTVIERDHHQGM
>NZ_CP048397.1|WP_164251894.1|3900102_3901956_+|redoxin-domain-containing-protein
MNDAAPSPAPQPAPAPRRRARVRAPELIGKGGWLNTGGNELTLADLRGRIVLLDFWTFCCINCLHVLDELRELEQKHSDTVVTIGVHSPKFVHEAEHTAVVDAVERYEVHHPVLDDPELATWKQYAVRAWPTLVVIDPEGYVVAQHAGEGHAHAIEKLVEELETEHAAKGTLRRGDGPYVAPEPVATDLRFPGKAVVLASGNFLVSDSTRHQLVELAADGESVVGRVGTGQRGFGDGPDAAFNEPQGLAPMPNGRIAVADTVNHAVRAYDPVSGVVETLAGTGSQWWQGSPAHGPALDVALSSPWDVAWWNDRLWIAMAGVHQLWTYDPATGTVRVAAGTTNEGLVDGPAAEAWFAQPSGLAATGDRLWVADSETSALRYVERDGDGYAVRTAVGTGLFDFGHRDGPAEQALLQHPLGVTALPDGSVAVSDTYNHALRRYDPATGEVTTLATDLREPSDAVLVGDDIVVVESAGHRLTRLRLPEEAVRVESVAHRTQRAATDVAPGALRLDVVFEAPKGQKLDARYGPSTRLLVSATPPELLARGAGAGTELGRELVLADGVTEGVLHVSAMAASCDDAPETEYPACHVHQQDWGVPVRVTPEGTGRLGLVLAGLDA
>NZ_CP048397.1|WP_164251893.1|3899057_3900041_+|helix-turn-helix-domain-containing-protein
MGWWQIDADTLAGSRFVISPLAETVASLKALERGTAAHAGAHPGERAWLDAHLPAYRERQAADPLIALLVRSAFGRTWNADFITPTPSGDRDGEPSFEEELVRIRATPPERARDDLLLSLDGPLPARLHRSDLPERAAAVLEWVWAEAVLPYWPRRRRLIEADVVARTAQLSQGGWASALSAMRPGMRWLGGNRLQINTRGGPSQVIPGVRLMFVPVTPHTGWVSWDADRYAVVYPCAGALADTGRARVPEPLRALLGPARAGVLVLLGAPKSTTQLVALTGQGLGSVGRHLKVLLDAGLIRRRRAGRSVLYFRTEAGEALVRAGDP
>NZ_CP048397.1|WP_164251892.1|3897711_3898956_-|MFS-transporter
MRTYRELFRTKEFTPLFLTSAAQVAAQTVSGLALGTLVFHATGSPLLSALAMFGPSLAQVIGATTLLSAADRLAPRATLTTVASVFALGTAATALPGLPIAAALAVVLGLGVVSALGGGVRLGLLNEILSTEGYLLGRSTLNMSAGLMQIGGFATGGVLLTVLSPRGTLLTGAALYLTAAITARLGLSRRPPRATGRPSVSATWRNNALLWASPPRRRVFLGLWVPNGLVVGCESLYVPYAPQHAGILFAAGAAGMLTGDILIGRFVPRRRRTHLAVPLLLLLAAPHLIFVLGPPLPLALAAVMLATVGYAASLVLQERLMELTPEALSGHALGLHSAGMLTMQGVCALLAGAVAELTSAATGITVLAAASLTVTLALTRGLRGGTGAAGSVVRTRAGDAVPPSPGAPVGTDPA
>NZ_CP048397.1|WP_164251900.1|3912174_3913938_+|aspartate--tRNA-ligase
MHRYRSHTCGELRASDVSTDVRLSGWLHNRRDLGGILFIDLRDHYGLVQLVARPGTPANEELSKLTKETVVRIDGKVSARGADNVNPELPTGEIEIEVTEVEVLGAAGPLPFTINTDDGVNEERRLEYRFLDLRRERMHRNILLRTAVISAIRHKMTTLGFNEMATPILTATSPEGARDFVVPSRLNPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDVEMSFVEQEDVFRPIEKMMTELFTEFGGGREVTSPFPRIPFRESMLKYGNDKPDLRAKLELVDISDVFEGSEFKAFAGRHVRALPVPDTAGQSRKFFDGLGDYAVEQGAKGLAWVRVGEDGSLAGPIAKFLTEDNVKVLTERLSLVPGHAIFFGAGEFGEVSKIMSAVRVEAAKRAGHFEEGVFRFCWVVDFPMYEKDEETGRIDFSHNPFSMPQGGLDDLETKDPLDILAWQYDIVCNGIELSSGAIRNHQPDVMLKAFEIAGYDRETVEHEFAGMLRAFRLGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPSELDETRLRELNIQLRKPVTK
>NZ_CP048397.1|WP_164251901.1|3914657_3915482_+|hypothetical-protein
MSYRSGPRPHGVAALLLAAGLLLGGCAGGFGGEGGSSVPQAVNGKGGNGGGEGTGGGRGRAVPGPAAEEQTEARVVRPREIPSLGPKTRSRIPEDSRQAVVVTGDAPDSNRAMLVLYERDPVEGWRSVSDPWPAHNALKGWTDDHRQGDLRSPIGVFGLTDAGGRLPDPGTRLPYDRGPAFTVDGVGFEGEPLAGSFDHVVAINYNRRPGTTPLDWTRPLGAGKGGGIWIHVDHGGPTQGCVSVPMGRMKELLRWLDPGKVPQVVMGDVSSLGR
>NZ_CP048397.1|WP_164251902.1|3915705_3917319_-|methionine--tRNA-ligase
MAATGSEEQGGRAYYVTTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANGVTPQEWADKLVDEAWRPLWDHLNIRNDDFIRTTEKRHTDRVQEFVQDLFDKDEIYKGGYEGPYCVGCEEYKLPGELLDGEGEFAGLKICAIHKTPVEILKEENYFFKLSEYGPKLLAHYEANPGFIQPESARNEVVNFVKQGLQDLSISRSTFDWGVPVPWDEKHVIYVWIDALLNYATAVGYNENPAKFEETFPADVHLVGKDILRFHAIIWPAMLLAQGLPLPGKIAANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAIAFGQDGSFSWEDFSARYTSELANDYGNLASRVAAMVGKYYGGTLPETTSGGVAEQAVRDGLAKAVTEADRKIGEELDFQGGILAIFDFVKQVNGYITEQEPWKVAKDTSPDGQAALATILYTAAEALRGVAVLLNPVMPETSQKLWDSLGADAALGALADQRVQDAGTWGLLPAGTTVTKGAVLFPRLEEKSA
>NZ_CP048397.1|WP_147873341.1|3917475_3918135_+|response-regulator
MRVLVAEDEEILAELIATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGDDVARRLVAEESRTRILMLTASTSMEERVKGLDLGADDYLGKPFEFPELVSRVRALRRRSARALPPTLERRGVRLDTVGRTAVRDGLALDLSVKELTVLQILLEADGKAVTAQQLLERAWDAQADPFSGVVRVCVGQLGEKLGDPALIRTVDVDGGGYVL
>NZ_CP048397.1|WP_164251903.1|3918131_3919253_+|HAMP-domain-containing-protein
MTGAIRKRIALVYGAVFLVLGGCLLTVVYLLSSAGTQTEAAEIAGRVVPAHPPSSGNGYFLNEEGQLAPVTVYQLTDNVSDAASDELMFWSVGALVVTALCAVGVGWWTAGRVLRPVHAMTAKARLLSEHNLHERIGTTGPDDELKELGDTLDELLGRLQTAFDSQRRFIANASHELRTPLATQRTAIQVGLAGANSPEELARTKQMLLDNNRRSERLIEGLLVLARSERQVEDQEEIRWGELVTEEAARHGLTVTVSEPGGVRGNRALLDRVVGNLLANAQAYGKGEVDVSVSGTAVTVRNNGPLISPEETAAFFEPFRRGEGRDRMGPGAGLGLSIVRSIVTAHGGTVTAEPGGADGGLSVRVELPVSTGR
>NZ_CP048397.1|WP_164254631.1|3919276_3919795_-|hypothetical-protein
MSLALTTLTGCGMTDSKDSGNSENSGDLPDAGTSNTQDAADEAERVSSELYDLIGVKGEASDTGPGVSQCGDKDPEKYFRIFHAWTFTPASADRLDGVMERLRTELPERGWKVVEYGPDTSKNKNLSLTADNDEKKYSVKIAHFAKDESPNLNLMVVSGCYRVPDGETVDRF
>NZ_CP048397.1|WP_164251904.1|3919931_3921710_-|hypothetical-protein
MDLATLKGFRPTEYEEAADGYRTTGDMAGAAKDTINNRISAGMTGRLRGEAAAAALRELRSLAKNFHYAQTECGLVSTALNGFAFDIAAAKRKLDAAIEDARADNCTVRQDGSVDYPAGKRPGEEKNEPGGTVSGSAGGSPTSDAQQRRAAGIHPNPYYGRAMAYANRIADALREATDADAKWAPKLRALKADDDLTVSKADWADAQSDMGGVGEAGRGYLDSLPQAPADGTPAANAEWWKKLSPEEQAAWLALRPETVGALDGLPATVRDEANRVVLEEKQGQLRMELDSMPKPPANEWTWITAGGYPSKVHTDEWMAWHNKYGDRYEQLNKSLKGMGSIQDRFDRTGERGLPEAYLLGFSPEGNGRAIVANGNPDTADHQAVHVPGTTSNLGSIGGDIGRMENVWRVASGAENGSVSTITWLGYDAPQDIVKDSPFSHYANDGAPAYNRFLDGLDASRTVDSDPHRTAIGHSYGTTLIGSAARQGDLNVDDVIFAGSPGVQVSNADQMDVPKGHVWNQEAEGDVVPDIGRFGHGGSDWNGLFTIPSDERFGANQLRTDTEGHSDYWKEGTDSLRNQGLVVAGKGDNAELK
>NZ_CP048397.1|WP_164251905.1|3921719_3922175_-|hypothetical-protein
MTWDEWEGLKAEAAQGRSTRMRLNQRPADQGGGGGPSEDLRSDKKAWVTAGEGVTGLKADIGKALTALENGQAGLGDTTGCRSAAAQKELYDSWKKYIGDVSGRCGELGGLLEKSGHDLAKSDQSVLTDLDRLKVKYADTEAVGGRAPKEQ
>NZ_CP048397.1|WP_164251906.1|3922784_3925787_+|SARP-family-transcriptional-regulator
MDFGVLGPLAVRRAGVPLELGTPKGRLLLAVLLCRPGRIVSGDALAEAIWGEEQPKSAAKNVQTYVYRLRQALGDPGRIAREGPGYLLRAGRDELDAARFEDLVDVARSALTAGDPDQSRRLYDEALGLWRGPAFAGLADVPALVAEAARLDELRLGVLEERIDVDLRLGRHGELLGELTALTMEHPFREGMWARLMLALYRGGRRADALLAYLQVRDILAEETGLEPGQKLRDLHRTILGDDPVEHPPPDPAVVTGNRERRNAKSARMLPPTLGDFSGRQAELSEIEAVLHPDRAADRPAAVVTVSGPGGVGKTALAVQAAHRLKSVYPDGQLFAALAGTRSQPADPATVLGRFLRALGVPANAVPDDPEERTDLYRSMLAERRILVVLDDAFDEEQLAPLLPASGRCGVIATGRVRLGGLGGAHRVQLSEMSEADSLAMLGNTTGDWVESATGAELSDLVRLCARLPLALRIVGSLLVSRPHWRVADVVSRLADERHRLDTLRYRDLEVRASFALSYAGLRPEARRLFRLLGLLEAPDFPLWAAAAAADTELREAQELLDELVDVHLLDVTGTPNGQARYGFHDLIRAYARERAQVEEAAAERDEAVVRVLGALLALTDIADRGHMGQNMFQRDAPRWRPERVEASLPRSVSPMASLDRERVPLVAGVRQAAELGRDELCWELAVGGHALFETERYFDDWQECYETAMRLAGAAGDVRGRARLLISLAGLRYARRRYGPAEESNTEAMGLFERIGDQRGYLEALSNAPFFLVPNGRLTDAIAAGREAWERLNAAGQKAAALHAYSQVGLAHLQAGRPEVAAEVLTEIVAGARQQGIRTLIARDTYWLGHAQLALGRHAPAQESFTELTAHVQDIGPSGAFYTAHAWGCLHLARGEYADARRRLLEAVEVARTTHDPMFETRVLVDLLDLRLYDPCDRRDLRTAIDRGEHAVEVARGIHYPYLLAGVLEKLAGLRAAAGDGTAARKLTGEAAAVRAGIR
>NZ_CP048397.1|WP_164254633.1|3925946_3926564_+|hypothetical-protein
MAAALVTLALGLSACDGDEEGAAAEDTPAASTSDPDAASSEPTGGDADNEAPAAGGDVAAPGTKLKVGDKAVLPFEYTSEKKGTVAVTVTAIEEGAEADMAAFGEKAAGMTPYFIKMKVENVGGTDMAYASLKLNGVVDGGGGTGVILIGDIPGKCDNETAPAEFTTKGASYETCTLSATKGETVTGASFDEGDAYSDDPVVWAN

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Crispr_ID: NZ_CP048397_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_8

3915539-3915631

Orphan

Consensus_repeat	Method
TGTCCTCAATCGCCGGACGGGCTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_8

>merge|NZ_CP048397|8|3915539-3915631|CRISPRCasFinder
TGTCCTCAATCGCCGGACGGGCTTGATTTGCCCGCCGGGTTGGAGGGGATTGCGCCGGGTCGGGCCGTGTCCTCAATCGCCGGACGGGCTTGA

>NZ_CP048397|8|8|3915539-3915631|CRISPRCasFinder
TGTCCTCAATCGCCGGACGGGCTTGA	TTTGCCCGCCGGGTTGGAGGGGATTGCGCCGGGTCGGGCCG
TGTCCTCAATCGCCGGACGGGCTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP048397.1\|WP_147873341.1\|3917475_3918135_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP048397.1\|WP_164251904.1\|3919931_3921710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP048397.1\|WP_164251907.1\|3926599_3927058_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251903.1\|3918131_3919253_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_CP048397.1\|WP_164251899.1\|3909806_3911984_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP048397.1\|WP_147873327.1\|3902160_3902379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251908.1\|3928256_3928589_-\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212150
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
NZ_CP048397.1\|WP_164251902.1\|3915705_3917319_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237012
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380809
NZ_CP048397.1\|WP_164251905.1\|3921719_3922175_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164254631.1\|3919276_3919795_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP048397.1\|WP_164254633.1\|3925946_3926564_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164251906.1\|3922784_3925787_+\|SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP048397.1\|WP_164251897.1\|3907177_3907681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164251898.1\|3907969_3908923_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	5.18693e-68
NZ_CP048397.1\|WP_147873330.1\|3905890_3906352_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00381456
NZ_CP048397.1\|WP_164251904.1\|3919931_3921710_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	6.71601e-26
NZ_CP048397.1\|WP_164251899.1\|3909806_3911984_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.18235e-52
NZ_CP048397.1\|WP_164251908.1\|3928256_3928589_-\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212150	cd11543, NTP-PPase_u6, Nucleoside Triphosphate Pyrophosphohydrolase EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea. This family corresponds to a group of uncharacterized hypothetical proteins from bacteria, showing a high sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, members in this family consist of a single MazG-like domain.	4.66772e-34
NZ_CP048397.1\|WP_164251896.1\|3903890_3905717_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0
NZ_CP048397.1\|WP_164251902.1\|3915705_3917319_-\|methionine--tRNA-ligase	gnl\|CDD\|237012	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP048397.1\|WP_164254629.1\|3906452_3907013_-\|hypothetical-protein	gnl\|CDD\|380809	cd20239, PFM_aerolysin-like, pore-forming module of aerolysin-type beta-barrel pore-forming proteins; uncharacterized subgroup. Generally, pore-forming proteins (PFPs) are secreted as water-soluble monomers, which upon binding to target lipid membranes, oligomerize and form transmembrane pores detrimental to cells. Beta-PFPs form pores by transmembrane beta-barrels. Aerolysin-type beta-PFPs are believed to use an amphipathic beta-hairpin to form the beta-barrel. Many of this family are bacterial toxins. A significant portion of the monomeric subunit structure is re-organized to form the pore. Oligomers formed by members of the aerolysin family include: hepta- (aerolysin), octa- (Dln1), and nonameric oligomers (lysenin and monalysin).	0.00301176
NZ_CP048397.1\|WP_164251895.1\|3902468_3903773_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP048397.1\|WP_164251900.1\|3912174_3913938_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP048397.1\|WP_164251901.1\|3914657_3915482_+\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	3.14581e-16
NZ_CP048397.1\|WP_164251906.1\|3922784_3925787_+\|SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	9.70086e-43
NZ_CP048397.1\|WP_164251903.1\|3918131_3919253_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	1.56547e-39
NZ_CP048397.1\|WP_147873341.1\|3917475_3918135_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.10138e-54

>NZ_CP048397.1|WP_164251901.1|3914657_3915482_+|hypothetical-protein
MSYRSGPRPHGVAALLLAAGLLLGGCAGGFGGEGGSSVPQAVNGKGGNGGGEGTGGGRGRAVPGPAAEEQTEARVVRPREIPSLGPKTRSRIPEDSRQAVVVTGDAPDSNRAMLVLYERDPVEGWRSVSDPWPAHNALKGWTDDHRQGDLRSPIGVFGLTDAGGRLPDPGTRLPYDRGPAFTVDGVGFEGEPLAGSFDHVVAINYNRRPGTTPLDWTRPLGAGKGGGIWIHVDHGGPTQGCVSVPMGRMKELLRWLDPGKVPQVVMGDVSSLGR
>NZ_CP048397.1|WP_164251900.1|3912174_3913938_+|aspartate--tRNA-ligase
MHRYRSHTCGELRASDVSTDVRLSGWLHNRRDLGGILFIDLRDHYGLVQLVARPGTPANEELSKLTKETVVRIDGKVSARGADNVNPELPTGEIEIEVTEVEVLGAAGPLPFTINTDDGVNEERRLEYRFLDLRRERMHRNILLRTAVISAIRHKMTTLGFNEMATPILTATSPEGARDFVVPSRLNPGKFYALPQAPQQFKQLLMISGFDRYFQIAPCFRDEDARADRSPGEFYQLDVEMSFVEQEDVFRPIEKMMTELFTEFGGGREVTSPFPRIPFRESMLKYGNDKPDLRAKLELVDISDVFEGSEFKAFAGRHVRALPVPDTAGQSRKFFDGLGDYAVEQGAKGLAWVRVGEDGSLAGPIAKFLTEDNVKVLTERLSLVPGHAIFFGAGEFGEVSKIMSAVRVEAAKRAGHFEEGVFRFCWVVDFPMYEKDEETGRIDFSHNPFSMPQGGLDDLETKDPLDILAWQYDIVCNGIELSSGAIRNHQPDVMLKAFEIAGYDRETVEHEFAGMLRAFRLGAPPHGGIAPGVDRIVMLLADEPNIRETIAFPLNGNAQDLMMGAPSELDETRLRELNIQLRKPVTK
>NZ_CP048397.1|WP_164251899.1|3909806_3911984_-|SpoIIE-family-protein-phosphatase
MRTEDVLAAIATGLWRWDNAAGLVTLDAEAARLFGLPAESTVLSEAAMRARLHPVDWNETYGIIRLAVAEGTLAEAHIRVVGEDGQVIRTIRSRSKPLATEREYGEDYELVGTVQEIVHPHAGALTGRSPVAGDWRRSREAFLLDAGRALAEARSTAEVLRVAASLSMPGFSPDGLAVFGVEGERLTVIGHHGHGDGAEGPFTDMSLSTDYPAAEVVRTGRAIYLATPKEYQDRYPATWPLVKRFERRSWAFVPLVVAGRTMGAWVAGFKHPVTFTPDERSVLTTVARMLAQALARAEVTETERELSLGLQRSMMPTLGPAIPNMSVAARYVPTGGGLQVGGDWYDIIPLPGGTKVALVIGDVQGHDVRAAGLMGQLRIALRAYAAEGHRPDAVLSRASRFLHGMYEFSTAQGPTHPDQSDDGEDSDYTVPRFATCLYMEVDPDSGTLDIARAGHPDPVIRSADGVALIRQTAGGLPLGIEADSDYPTTRVVLEPGDTLMLCTDGLIETGGHDMLSGWARLRPVLENTTDTSLEKLADALVEAVHGPGSHYTTGPLADRREDDIALLLLSRHSSPARRPPRRTVLTIAQAEPDQVADARHQLRELLHDWADEEQVDSAVLMLSEMATNVLVHTDGDAVLIAEAAGDRGKRRLRVEVADVSDELPHRRRPGELASSGRGLLLMEMLADAWGVDPRGEGKSIWFEIYEQNDTPLPSRPAEKLSPSGD
>NZ_CP048397.1|WP_164251898.1|3907969_3908923_+|pirin-family-protein
MPAVTVENPLTLPRVTAAADAVARPVLAVSTAPGGFEGEGFPVRRAFAGINYQHLDPFIMMDQMGEVEYAPGEPKGTPWHPHRGFETVTYLIDGTFIHQDSNGGGGTIRNGDTQWMTAGSGLLHIEAPPESLVTSGGLFHGLQLWVNLPAADKMMDPRYQDIRGGQVQLLTSHDGGALLRVIAGSLDGHEGPGITHTPITMIHATLRPGAEVTLPWREDFNGLAYVLAGRGSVGTDRRPVHTGQTAVFGAGSSLTVRADESQDSNTPDLEVVLLGGRPIREPMAHYGPFVMNSHAELKQAFEDFQAGRLGTVPAGTE
>NZ_CP048397.1|WP_164251897.1|3907177_3907681_-|hypothetical-protein
MSAAQTRFARLTGVGTAVLLATGALTAPSAVADEKPHCAVDVVTNAETCFATLPEALDAARSGQGNGPRTMAGDVIQGTFFDDPQFGGASLTVYGTAPCEKDGWVNYQYDLPDDWKNRISSVQPWANCWLWLYPEPGLGGDRDGPFDENAADIGGLMNDRTQSIGFS
>NZ_CP048397.1|WP_164254629.1|3906452_3907013_-|hypothetical-protein
MALAPSSAQAADEQPTIRELLDKCDNGTDLCVFHPSGPPEVSMGEAHQVGDSAFNCTADLQRSTVGWSDTTGESNSVGVSLSAEVGFAEVFKVSIETNYNHTWESSHTESEQTNVDVRPGEVGWVTREAQMQRVSGQYELHFEDRFYGHYYWYVPFDATGPLPDAPSTKTQHTRPMTDQERSEHCG
>NZ_CP048397.1|WP_147873330.1|3905890_3906352_+|SseB-family-protein
MYGYDQNAGAQQQYAPPQQPMGGGYGEQPLYPEPSPPSLADAVRAFTTGSLSAEDFQQIFATSKVYCPRGDNPGFLALHNTQQPVIPMFSTLKELRRYAGKESKYFVITGAEVIDLLPTGYGFVIDMEGDHRMVFDAKAVEQMVDFAMRRMYG
>NZ_CP048397.1|WP_164251896.1|3903890_3905717_-|acyl-CoA-dehydrogenase
MGHYKSNLRDIEFNLFEVLGRDKLYGTSPFAEMDVETARTILAEVTKLAESELAASYADADRNPPVFDPETNTAPVPASFKKSYQAFMDSEYWRLGLPEEIGGTTSPRSLIWAYAELLLGANPAIWMYTSGPAFAGILFEEGNEAQKKIAEIAVEKQWGSTMVLTEPDAGSDVGAGRAKAVEQEDGSWHIEGVKRFITSGEHDMSENILHYVLARPEGAGPGTKGLSLFLVPKYEFDWETGELGERNGVYATNVEHKMGLKASNTCELTFGDRHPAKGWLIGDKHEGIRQMFMIIEFARMMVGTKAIAALSTGYLNALEYAKERVQGPDLSQFMDKSAPKVTITHHPDVRRSLMTQKAYAEGMRALVLYTASLQDEIAKKEAEGEDVKAQHALNDLLLPIVKGYGSEKSYEQLAQSLQTLGGSGYLQEYPIEQYIRDAKIDTLYEGTTAIQGQDFFFRKIVRDQGQALNTLSEEIKQFLAVGTGGAELAPARDALAKAAVDLEAIVGKMLTDLTATAEDVKNIYKVGLNTTRLLMASGDVVVGYLLLRGAAVAVEKLETASAKDVPFYQGKIAAAKFFAGNVLPGVSVERAVAESVDNSLMELDEAAF
>NZ_CP048397.1|WP_164251895.1|3902468_3903773_-|M18-family-aminopeptidase
MSTPARFDRGHTDDLMTFLAASPTPYHAVANAAERLEKAGFRQVLETDAWEGTTGGKYVLRGGALIAWYVPEGAAPHTPLRIVGAHTDSPNLRVKPLPDTGAYGWRQVAVEVYGGPLLNTWLDRDLGLAGRLSLRDGTHRLINVDRPLMRVPQLAVHLDRGVNTDGLKLNPQRHMQPIWGLGEAGEGDLIRFVAEEAGLDASDVTGWDLMAHSVEPPAYLGRDRELMAGPRMDNLLSVHAGTAALAAVAGSAASGTALPYIPVLAAFDHEESGSQSDTGADGPLLGTVMERSVLARGGSYEDRARALAGTVCLSSDTGHAVHPNYAERHDPTHHPRANGGPILKVNVNMRYATDGGGRAVFAAACERAGVPWQTFVSNNSMPCGTTIGPITAARHGIKTVDIGAAIVSMHSARELCGADDPFLLANALAAFLEG
>NZ_CP048397.1|WP_147873327.1|3902160_3902379_-|hypothetical-protein
MGIGGCIALIAVGAILTFATDWEAESVNLDLVGVILMAVGMIGIATFTSIAKRRRAVVTPPTVIERDHHQGM
>NZ_CP048397.1|WP_164251902.1|3915705_3917319_-|methionine--tRNA-ligase
MAATGSEEQGGRAYYVTTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTDEHGQKIMRTAEANGVTPQEWADKLVDEAWRPLWDHLNIRNDDFIRTTEKRHTDRVQEFVQDLFDKDEIYKGGYEGPYCVGCEEYKLPGELLDGEGEFAGLKICAIHKTPVEILKEENYFFKLSEYGPKLLAHYEANPGFIQPESARNEVVNFVKQGLQDLSISRSTFDWGVPVPWDEKHVIYVWIDALLNYATAVGYNENPAKFEETFPADVHLVGKDILRFHAIIWPAMLLAQGLPLPGKIAANGWLMVGGEKMSKSNLTGIKPQDLTSHFGVDAYRWYFLRAIAFGQDGSFSWEDFSARYTSELANDYGNLASRVAAMVGKYYGGTLPETTSGGVAEQAVRDGLAKAVTEADRKIGEELDFQGGILAIFDFVKQVNGYITEQEPWKVAKDTSPDGQAALATILYTAAEALRGVAVLLNPVMPETSQKLWDSLGADAALGALADQRVQDAGTWGLLPAGTTVTKGAVLFPRLEEKSA
>NZ_CP048397.1|WP_147873341.1|3917475_3918135_+|response-regulator
MRVLVAEDEEILAELIATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGDDVARRLVAEESRTRILMLTASTSMEERVKGLDLGADDYLGKPFEFPELVSRVRALRRRSARALPPTLERRGVRLDTVGRTAVRDGLALDLSVKELTVLQILLEADGKAVTAQQLLERAWDAQADPFSGVVRVCVGQLGEKLGDPALIRTVDVDGGGYVL
>NZ_CP048397.1|WP_164251903.1|3918131_3919253_+|HAMP-domain-containing-protein
MTGAIRKRIALVYGAVFLVLGGCLLTVVYLLSSAGTQTEAAEIAGRVVPAHPPSSGNGYFLNEEGQLAPVTVYQLTDNVSDAASDELMFWSVGALVVTALCAVGVGWWTAGRVLRPVHAMTAKARLLSEHNLHERIGTTGPDDELKELGDTLDELLGRLQTAFDSQRRFIANASHELRTPLATQRTAIQVGLAGANSPEELARTKQMLLDNNRRSERLIEGLLVLARSERQVEDQEEIRWGELVTEEAARHGLTVTVSEPGGVRGNRALLDRVVGNLLANAQAYGKGEVDVSVSGTAVTVRNNGPLISPEETAAFFEPFRRGEGRDRMGPGAGLGLSIVRSIVTAHGGTVTAEPGGADGGLSVRVELPVSTGR
>NZ_CP048397.1|WP_164254631.1|3919276_3919795_-|hypothetical-protein
MSLALTTLTGCGMTDSKDSGNSENSGDLPDAGTSNTQDAADEAERVSSELYDLIGVKGEASDTGPGVSQCGDKDPEKYFRIFHAWTFTPASADRLDGVMERLRTELPERGWKVVEYGPDTSKNKNLSLTADNDEKKYSVKIAHFAKDESPNLNLMVVSGCYRVPDGETVDRF
>NZ_CP048397.1|WP_164251904.1|3919931_3921710_-|hypothetical-protein
MDLATLKGFRPTEYEEAADGYRTTGDMAGAAKDTINNRISAGMTGRLRGEAAAAALRELRSLAKNFHYAQTECGLVSTALNGFAFDIAAAKRKLDAAIEDARADNCTVRQDGSVDYPAGKRPGEEKNEPGGTVSGSAGGSPTSDAQQRRAAGIHPNPYYGRAMAYANRIADALREATDADAKWAPKLRALKADDDLTVSKADWADAQSDMGGVGEAGRGYLDSLPQAPADGTPAANAEWWKKLSPEEQAAWLALRPETVGALDGLPATVRDEANRVVLEEKQGQLRMELDSMPKPPANEWTWITAGGYPSKVHTDEWMAWHNKYGDRYEQLNKSLKGMGSIQDRFDRTGERGLPEAYLLGFSPEGNGRAIVANGNPDTADHQAVHVPGTTSNLGSIGGDIGRMENVWRVASGAENGSVSTITWLGYDAPQDIVKDSPFSHYANDGAPAYNRFLDGLDASRTVDSDPHRTAIGHSYGTTLIGSAARQGDLNVDDVIFAGSPGVQVSNADQMDVPKGHVWNQEAEGDVVPDIGRFGHGGSDWNGLFTIPSDERFGANQLRTDTEGHSDYWKEGTDSLRNQGLVVAGKGDNAELK
>NZ_CP048397.1|WP_164251905.1|3921719_3922175_-|hypothetical-protein
MTWDEWEGLKAEAAQGRSTRMRLNQRPADQGGGGGPSEDLRSDKKAWVTAGEGVTGLKADIGKALTALENGQAGLGDTTGCRSAAAQKELYDSWKKYIGDVSGRCGELGGLLEKSGHDLAKSDQSVLTDLDRLKVKYADTEAVGGRAPKEQ
>NZ_CP048397.1|WP_164251906.1|3922784_3925787_+|SARP-family-transcriptional-regulator
MDFGVLGPLAVRRAGVPLELGTPKGRLLLAVLLCRPGRIVSGDALAEAIWGEEQPKSAAKNVQTYVYRLRQALGDPGRIAREGPGYLLRAGRDELDAARFEDLVDVARSALTAGDPDQSRRLYDEALGLWRGPAFAGLADVPALVAEAARLDELRLGVLEERIDVDLRLGRHGELLGELTALTMEHPFREGMWARLMLALYRGGRRADALLAYLQVRDILAEETGLEPGQKLRDLHRTILGDDPVEHPPPDPAVVTGNRERRNAKSARMLPPTLGDFSGRQAELSEIEAVLHPDRAADRPAAVVTVSGPGGVGKTALAVQAAHRLKSVYPDGQLFAALAGTRSQPADPATVLGRFLRALGVPANAVPDDPEERTDLYRSMLAERRILVVLDDAFDEEQLAPLLPASGRCGVIATGRVRLGGLGGAHRVQLSEMSEADSLAMLGNTTGDWVESATGAELSDLVRLCARLPLALRIVGSLLVSRPHWRVADVVSRLADERHRLDTLRYRDLEVRASFALSYAGLRPEARRLFRLLGLLEAPDFPLWAAAAAADTELREAQELLDELVDVHLLDVTGTPNGQARYGFHDLIRAYARERAQVEEAAAERDEAVVRVLGALLALTDIADRGHMGQNMFQRDAPRWRPERVEASLPRSVSPMASLDRERVPLVAGVRQAAELGRDELCWELAVGGHALFETERYFDDWQECYETAMRLAGAAGDVRGRARLLISLAGLRYARRRYGPAEESNTEAMGLFERIGDQRGYLEALSNAPFFLVPNGRLTDAIAAGREAWERLNAAGQKAAALHAYSQVGLAHLQAGRPEVAAEVLTEIVAGARQQGIRTLIARDTYWLGHAQLALGRHAPAQESFTELTAHVQDIGPSGAFYTAHAWGCLHLARGEYADARRRLLEAVEVARTTHDPMFETRVLVDLLDLRLYDPCDRRDLRTAIDRGEHAVEVARGIHYPYLLAGVLEKLAGLRAAAGDGTAARKLTGEAAAVRAGIR
>NZ_CP048397.1|WP_164254633.1|3925946_3926564_+|hypothetical-protein
MAAALVTLALGLSACDGDEEGAAAEDTPAASTSDPDAASSEPTGGDADNEAPAAGGDVAAPGTKLKVGDKAVLPFEYTSEKKGTVAVTVTAIEEGAEADMAAFGEKAAGMTPYFIKMKVENVGGTDMAYASLKLNGVVDGGGGTGVILIGDIPGKCDNETAPAEFTTKGASYETCTLSATKGETVTGASFDEGDAYSDDPVVWAN
>NZ_CP048397.1|WP_164251907.1|3926599_3927058_+|hypothetical-protein
MKFKRARRFGTTGALVAAAFGSSIVFTPASASAESEWVCYGTQVKRCATVWWNEATGTYHARAKITDVAGGGNYEVKVTNVKLQRFDGDRMVTVRTKADTDGWHATEDVALTASVDPCVWDQSFKVLATFSWRGASSGEKTWRPDTGWSLMC
>NZ_CP048397.1|WP_164251908.1|3928256_3928589_-|nucleotide-pyrophosphohydrolase
MDLHELQARALRIHDLYDELNQHTRGRVWTREEFMLGFVGDVGDLAKLVMAEEGARPGGGRQALEHELADCLWSVLILAHRYGVDLDHAFRRTMDELDGSIRAQLPPGAD

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Crispr_ID: NZ_CP048397_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_9

4121443-4121592

Orphan

Consensus_repeat	Method
CCGGCGTACCCGACCCGGACGCCCCCGGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP048397_9

>merge|NZ_CP048397|9|4121443-4121592|CRISPRCasFinder
ACGGCGAATCCGGCGCGCAGGCCCCGGACGCTTCCGGCGACGAGGCCGGCGTACCCGACCCGGACGCCCCCGGCGACGACGCCTCCGGCGCGCGGACCCCGGACGACTCCGACGACGAATCCGGCGTACCCGACCCGGACGCCCCCGGCG

>NZ_CP048397|9|9|4121443-4121592|CRISPRCasFinder
ACGGCGAATCCGGCGCGCAGGCCCCGGACG	CTTCCGGCGACGAGGCCGGCGTACCCGACC
CGGACGCCCCCGGCGACGACGCCTCCGGCG	CGCGGACCCCGGACGACTCCGACGACGAAT
CCGGCGTACCCGACCCGGACGCCCCCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164252023.1\|4118813_4120451_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|235139
NZ_CP048397.1\|WP_164252020.1\|4110760_4113436_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP048397.1\|WP_164252019.1\|4110159_4110564_-\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
NZ_CP048397.1\|WP_164252030.1\|4131251_4134167_+\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237154
NZ_CP048397.1\|WP_164254689.1\|4114236_4115541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227829
NZ_CP048397.1\|WP_078075930.1\|4127372_4127786_+\|DUF3151-domain-containing-protein	unknown	unknown	gnl\|CDD\|378646
NZ_CP048397.1\|WP_147873506.1\|4113632_4114181_+\|YbjN-domain-containing-protein	unknown	unknown	gnl\|CDD\|371210
NZ_CP048397.1\|WP_023539836.1\|4109689_4110010_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239551
NZ_CP048397.1\|WP_164252025.1\|4124522_4125737_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224090
NZ_CP048397.1\|WP_164252022.1\|4118189_4118708_+\|DUF2617-family-protein	unknown	unknown	gnl\|CDD\|378512
NZ_CP048397.1\|WP_164254686.1\|4108413_4109262_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP048397.1\|WP_147873514.1\|4123452_4124484_+\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406
NZ_CP048397.1\|WP_164252027.1\|4127927_4128743_+\|DUF3152-domain-containing-protein	unknown	unknown	gnl\|CDD\|371483
NZ_CP048397.1\|WP_147873508.1\|4116205_4117432_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|236095
NZ_CP048397.1\|WP_164252026.1\|4125761_4127264_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP048397.1\|WP_164252021.1\|4115461_4116190_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NZ_CP048397.1\|WP_147873513.1\|4122801_4123347_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP048397.1\|WP_164254691.1\|4121977_4122766_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185698
NZ_CP048397.1\|WP_164252028.1\|4128835_4129681_+\|tryptophan-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|188272
NZ_CP048397.1\|WP_164252029.1\|4129673_4130978_+\|kynureninase	unknown	unknown	gnl\|CDD\|226363

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164252023.1\|4118813_4120451_+\|polyamine-aminopropyltransferase	gnl\|CDD\|235139	PRK03612, PRK03612, polyamine aminopropyltransferase.	0
NZ_CP048397.1\|WP_164252020.1\|4110760_4113436_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP048397.1\|WP_164252019.1\|4110159_4110564_-\|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	8.11806e-19
NZ_CP048397.1\|WP_164252030.1\|4131251_4134167_+\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237154	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP048397.1\|WP_164254689.1\|4114236_4115541_-\|hypothetical-protein	gnl\|CDD\|227829	COG5542, COG5542, Predicted integral membrane protein [Function unknown].	2.1028e-07
NZ_CP048397.1\|WP_078075930.1\|4127372_4127786_+\|DUF3151-domain-containing-protein	gnl\|CDD\|378646	pfam11349, DUF3151, Protein of unknown function (DUF3151). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.01071e-73
NZ_CP048397.1\|WP_147873506.1\|4113632_4114181_+\|YbjN-domain-containing-protein	gnl\|CDD\|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.61837e-10
NZ_CP048397.1\|WP_023539836.1\|4109689_4110010_+\|hypothetical-protein	gnl\|CDD\|239551	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation.	1.27932e-06
NZ_CP048397.1\|WP_164252025.1\|4124522_4125737_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	1.65419e-133
NZ_CP048397.1\|WP_164252022.1\|4118189_4118708_+\|DUF2617-family-protein	gnl\|CDD\|378512	pfam10936, DUF2617, Protein of unknown function DUF2617. This bacterial family of proteins has no known function.	1.11537e-66
NZ_CP048397.1\|WP_164254686.1\|4108413_4109262_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.89346e-06
NZ_CP048397.1\|WP_147873514.1\|4123452_4124484_+\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP048397.1\|WP_164252027.1\|4127927_4128743_+\|DUF3152-domain-containing-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	1.71207e-34
NZ_CP048397.1\|WP_147873508.1\|4116205_4117432_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|236095	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC.	0
NZ_CP048397.1\|WP_164252026.1\|4125761_4127264_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.73231e-71
NZ_CP048397.1\|WP_164252021.1\|4115461_4116190_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.73038e-24
NZ_CP048397.1\|WP_147873513.1\|4122801_4123347_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	1.32292e-63
NZ_CP048397.1\|WP_164254691.1\|4121977_4122766_+\|aldose-1-epimerase	gnl\|CDD\|185698	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	3.19151e-58
NZ_CP048397.1\|WP_164252028.1\|4128835_4129681_+\|tryptophan-2,3-dioxygenase	gnl\|CDD\|188272	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine. [Energy metabolism, Amino acids and amines].	7.45774e-150
NZ_CP048397.1\|WP_164252029.1\|4129673_4130978_+\|kynureninase	gnl\|CDD\|226363	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism].	1.22914e-137

>NZ_CP048397.1|WP_164252023.1|4118813_4120451_+|polyamine-aminopropyltransferase
MIDQSVVAPPDSAARLPVRPSAGRFLILVVVFVCAACGLVYELELVALASYLIGDSVTQASVVLSLMVFAMGLGSLLAKRLRCRAAVGFGLVEAALALLGGLSALVLYATFAWMGESRYALIGFSLSIGVLIGAEIPLLMTLIQRVSRQDAGGTVADLFAADYVGALVGGLAFPFLLLPWFGQLTGALLTGAVNVVAGGALVLWVFGRDLTGRERGLLLLVNVLVLAVLATAAVLVDDFERAARRAVYGDGVRVAVQTDVQEVVLTGGAEGPLDLYLDGRLRVSERDEYRYHEALVHPAMRGRHARVLILGGGDGLAAREVLRYPDVRSVTLVELDPGVARLARTDPALAALNEHVYGDPRFRVEYADAFTWLRGRGTAGAGAYDVVISDLPNPGITPSTKLYSEEFYVLASRVLAEGGRLAVHAGPPAVRPRTYWTVEATLRAAGFGTSPYTAKGRAAGFGTGPDRSHDGKNAGGAEGAGEGVRTDWGFVLAAAGRTPAVGLAPDAPRLRSLAPPVLEAGILRAERTRLRDLPPSTLVHPRYAG
>NZ_CP048397.1|WP_164252022.1|4118189_4118708_+|DUF2617-family-protein
MLRTLNTAYTDTRSADLAWALGREPLPALAVLDLELGCAKVQMRLLGASHQVLLEQEQGSCSETVACIPGSSTPLPLGVAERVGEWSYEFAARVETLSQGSFAGRAQELLALVADHPNGLAGTFPGDPHAFTAMLVRRHDGQVSWRTWHAYPQEGTLVVTRTRVGVRVPVAL
>NZ_CP048397.1|WP_147873508.1|4116205_4117432_-|pyridoxal-phosphate-dependent-aminotransferase
MAAMTATNPPTPAASGDPAPRRPLLNRRLAEFGTTIFAEMSALAVRTGAINLGQGFPDTDGPEEVREAAVRALRDGRGNQYPPGPGVPELRTAIADHQLKRYGLAYDPDTEVLVTAGATEAIAASLLALVEPGDEVIALEPYYDSYAASIALAGGTRVPVTLRPRDGAYHLDLDELRDAVTPRTRLILLNTPHNPTGTVLTREELAAVAALAVERDLLVVTDEVYEHLVFDGEHLPIATFPGMRERTVTISSSGKTFSFTGWKVGWVTAAPELVSTVRAAKQFLTYVSAGPFQYAVAEALRLPDSYFDELRDDLRAKRDLLSAGLVAAGFEVYRPAGTYFVTTDIRPLGESDGFAFCRALPERCGVVAVPNAVFYDHREQGAPFVRFAFCKRTEVLADAAGRLKTLAG
>NZ_CP048397.1|WP_164252021.1|4115461_4116190_+|CHAT-domain-containing-protein
MAGGTASAASAVSSVSADRGHLRARVIGRADLRRDPCPARPLSRRPGTKAGRTGGARGRAACRRDRGGSGRGAARGAGGVCVGGGVRHVAAGPVVGGDAHFACHAVSDPQRPSNGRLMPHGPADASPTVRDLARLCLPGARLAYLSACDTMRIRAELADGSVHLASAFQMAGFPHVVGSLWQVDDTVGARIARGLYERLAPDEGGPLSVEGTARALHRAVCEVRADHPRTPSLWACQVHTGP
>NZ_CP048397.1|WP_164254689.1|4114236_4115541_-|hypothetical-protein
MTRARRCPLSADTLDTADAADAVPPATRKAPARASGPATPPAVTFTALVPRRTPHRRAARLSSALRRAAPALGLFAAARLTGLLVLCLWAEHIGRSPSQLLTRSWDSVWYTRIAADGYGYTLHFTDGAVHSDLAFFPLYPGLVRAVTTVLPLTGDTAALLLSWVAAAAAALAVYLVGERLHGRTTAAVLVLLWGLLPHSVVLSLAYTEPLLTAFAAFSLYAVLTGRWLWAGSLAALAGLSRPNGIAIAAAVCAAAAYELWKRRGHAPWRLWAAAVVAPLGWGGWVLWVGLRTGDPLSGYFAVQAGWRSRFDLGVDNLLNVRDVALRPTELATPMTALIVAAAVLLFALLLVDRENRPPLPLLVYAGVLLLIAVGGGGFFESKPRFLLPAFPLLLPLACALTKARPRAVIVVIIALAGLSCCYGTYLLTLAPMPL
>NZ_CP048397.1|WP_147873506.1|4113632_4114181_+|YbjN-domain-containing-protein
MTIDPSSIPNFGAQPQPQAAGTAGPVVPDQDLVKQLLDQMELKYVVDDEGDLAAPWEEFRTYFMFRGEGDQQVFSVRTFYDRPHAIDDKPRILDAIDDWNRRTLWPKVYSHVHEEEDGGPTTVRLIGEAQMLIGTGVSLEHFVSSTVSWVRASIEFDKWIVETFGLTPAEEKPAGEKPADDA
>NZ_CP048397.1|WP_164252020.1|4110760_4113436_+|ATP-dependent-chaperone-ClpB
MDAELTNKSKDAFNAATERAVSAGHADLTPAHLLLALLAGEDNENITDLLVAVDADQAEVRSGADRLLAGLPSVRGSTVAPPQPDRRLLAVVGDADKRAGKLGDDYVSTEHLLIGIAAEGGKAGDVLDRQGAGAKKLLAAFEKTRGGRRVTTPDPEGQYKALEKFGTDFTAAARLGRLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKKVVSLDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDAALERRFQQVLIAEPNVEDTIAILRGLKGRYEAHHKVRIADAALVAAAALSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRSVDRLRMEELALKNESDPASKQRLEKLRRDLADREEELRGLDARWQKERQGLNRVGELKEKLDELRGRAERAELDNDLGTASKLLHGEIPAVERELEAAAEAEQEAATDTMVKEEVGPDDIADVVGSWTGIPAGRLLEGETRKLLRMEAGLGNRLIGQTEAVGAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQYLVDPVPSAETKKKQVLEAVRSSFKPEFLNRLDDLVVFSALSKEELARIADLQIARLAKRLADRRLTLDVTPEALTWLADEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEIVDGDTVRVERAGDGLIVGPATRGQEPEDTAAGAGDTAAGSGRDAPSLEKTP
>NZ_CP048397.1|WP_164252019.1|4110159_4110564_-|TIGR03618-family-F420-dependent-PPOX-class-oxidoreductase
MAQDVRDPDPEYLAFWGERHLCTLTTLRPDGTPHVVPVGVTYEPEAALARVITNKNSTKVANVLAAGPDGGRVAVCQVHGRRWATLEGLATVRTETDRVADAVGRYAARYERTPAPNPDRVVIEIAVDRALGRG
>NZ_CP048397.1|WP_023539836.1|4109689_4110010_+|hypothetical-protein
MTVPPDDRVFRREMASAYRSGWHFIDLVTAIPHRGDSLMVTLFGEPVVVVREEDEDVRAYRCLRKPRGAPQPVRCAIRYDMIFVNLDQRDHQLVEPQTISATPRSA
>NZ_CP048397.1|WP_164254686.1|4108413_4109262_-|helix-turn-helix-transcriptional-regulator
MALALLRPDPDDPQWLRPVSPSIALNQLTHPLEREIQDRRQLAMSLAETFEPFMTLTAMDPSATHAITVLEGLSLINSTLDRVTAECTEELLTVQPGSGRKPGSQEEALRRVRPLLDNGVKMRTLYQHTARHHPATLAYVELVAPDGVEVRTLEEIIERLIIVDRKVAFVPARSDRRIALELRHEGLVQYLVGVFEQFWLHGTPWDEQLSYAPEIDGITSTQRSIAKLLIDGHVDEAIARRLGMNVRTCRAHIAKLSTTLGSGSRAQLGYLIAQSGILDHDH
>NZ_CP048397.1|WP_164254691.1|4121977_4122766_+|aldose-1-epimerase
MRLAAGDAELTIHPTNGCRLASLRAGGTELLRQGDRYGCFPMVPWAGRVGLGRFRNGGETHQLPLNSPPHAIHGTGRDTSWRTARKGGSEAAFTYELADPWPYTGRVTQLFELTGDSLTLTLGVETYDDSFPAQAGWHPWFLRHLDGSTADEDAVRLDFSPAWQEERGEDHLPTGRRVEPRPGPWDDCFAMPDGVDATLTWPGRLELKVTSTAEWAVVYDEQAEAVCVEPQTGPPNGLNTAPRLVTPIDPLEIRATWSWRRL
>NZ_CP048397.1|WP_147873513.1|4122801_4123347_+|orotate-phosphoribosyltransferase
MTDVRAELLQQIKDKAVVHGKVTLSSGIEADWYIDLRRTTLDGQAAPLVGRVMLDTAAAAGLDYDCVGGLTLGADPVATSMLHASAARGERLDAFVVRKQGKAHGMQRRIEGTDVKGRRCLVVEDVSTTGGSPLTAVEAVREAGGEVVAVAVIVDRGAAGAVEAAGLRYVSAYTLDDLGLA
>NZ_CP048397.1|WP_147873514.1|4123452_4124484_+|class-II-fructose-bisphosphate-aldolase
MPIATPEVYAEMLDRAKAGKFAYPAINVTSSQTLHAALRGFAEAESDGIIQMSTGGAEFLGGQHNKDMVTGAVALAEFAHIVAAKYDVTVALHTDHCPKDKLDTYVRPLLDVSAERVKAGRNPLFQSHMWDGSAETLADNLDIGEELLARAAAAKIILEVEITPTGGEEDGVTHEINDSLYTTVDDALRTAEALGLGDKGRYLLAASFGNVHGVYKPGNVVLRPELLKDLQDGVAAKYGKPAGSQPFDFVFHGGSGSSAEEIATALENGVVKMNLDTDTQYAFTRPVADHMFRNYDGVLKVDGEVGSKKTYDPRTWGKLAEAGMATRVTEACAALRSTGTRLK
>NZ_CP048397.1|WP_164252025.1|4124522_4125737_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MPGPRAVPTRSEEDHPPVGYDFDTPVDRRGTWSVQWDGVADRFGVDGLLPFTISDMDFASAPEVLAALRSRLAHGVLGYTNWRHGDFLSALRHWFTTRYDTELDTDRVVYAPSVLNQVSQLLRMWTGPGDGVVVHTPTYDGFRKAVTGLGRELRGVPVGDTPALERELTRADSKVLILCSPHNPTGRVWTESELTVFAGLAAAYDVAVISDEIHADFVHPEFVPDGRRHLPWSRFGTGRWAIVTSASKSFNFPALSGSYGVIGDRDDHAEFMRRMLTAEGLASPAVLALTAHITAYREGAPWLDALNTYVAANLRMLADRLDAAFPQLAWRPPEAGYLAWIDLRPLGVDDAALQRELIEHEKVAIMPGTTYGCEGYVRLNVGCPRAKAELGTDALIRALGRLAR
>NZ_CP048397.1|WP_164252026.1|4125761_4127264_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MDIRLGTASGRWIVLTTVLGSSMALLDSTVVNVALPHIGDDLDASLADLQWTVNAYMLTLAGLILLGGSLGDRFGRRRIFVLGIVWFALGSLLCGVAPTAEVLILARALQGVGGALLVPGSLALIQASFHPDDRARAVGLWSGFGGVGAAVGPFLGGFLVDGPGWRWVFLLNVPLAAICVPVALRHVPESRDPAAHGRFDVLGAVLGAAALGLVTYALIAKAWWAGAAGVLVGVWFVLLERRRPDPMLPPSIFSSRLFTSVNMVTLCVYAAFGGFFFLTALQLQVVAGYSALGAGTALLPTTVLMLLFSAKSGELGSRIGPRIPLTVGPLLCACGLLLMLRVGGGADASYVRDVLPALVVMGLGMVTLVAPLTATVLASVDSSRAGLASGINNAAARAAGLLAVAALPLLAGAGPEVYRSPTQFDAAFDRAMPLSAGVLVLASLIAFTMVRTPKAAPGGTAEAAPSLPQCKVNCGLSSPPLEPTAVRKGAAEGGATAAGA
>NZ_CP048397.1|WP_078075930.1|4127372_4127786_+|DUF3151-domain-containing-protein
MAIHKDLLGGPPPTHLPDDPEPRELLANGTAPADVAAKYPTSSLAWAQLADDAFENGRVVESYAYARTGYHRGLDSLRRSGWKGHGPVPWEHEPNRGFLRALHALARSAQAIGEHEEYERCSVFLRDSSAAAADTLG
>NZ_CP048397.1|WP_164252027.1|4127927_4128743_+|DUF3152-domain-containing-protein
MGKRVPAHRRRRLYARALPLGLGLTALLVGGVAALAGRPESGPTAGAAAPGDEKPRSAAATTPPPSPAGSAGPSPGTPSRIPIPPDGPGTFTTARSAGSPVGSGGTLRRYKVQVERGIDLSGREAAVEIETILAHPRGWTSEGRHSFQLVGSGPSDFEVKIATPGTVDRICGAAGLRTRGEVNCTVGRTVVVNLKRWVLGSDQFDGPVTEYRALIINHEVGHRIGRGHVTCAGAGKPAPAMMQQIKGLRGCHANAWPYAEDGTYITGPAVP
>NZ_CP048397.1|WP_164252028.1|4128835_4129681_+|tryptophan-2,3-dioxygenase
MSQHPDASGAGSEAPNLDFAGTTPYEDYVQADVLTHLQHPMSDDPGEMVFLVTTQVMELWFTVIVHEWETASRALREDRVPVAIDALKRSVREFEALNASWTPLSQLTPVQFNSYRSALGDGSGFQSAMYRRMEFLLGEKSASMLVPHRGAPRVHAELEKALQEPSLYDEVLGLLARRGLPVPAQALNRDLTQKYEPSRAVEEIWAGIYAEPDQHGEVIRLGEALTDVAELVWRWRNDHLVATRRAMGSKTGTGGSAGVAWLEKRAQKNVFPELWTARSHV
>NZ_CP048397.1|WP_164252029.1|4129673_4130978_+|kynureninase
MSEATEAPTASVPGSGAGSASASASEALVKRAAELDAADQLAAHRELFALDDDSVYLDGNSLGALPRHVPARVQDVVARQWGELRIRSWTEGGWWTAPERIGDRIAPLVGAGPGRIVVGDSTSVNVFKAVVAAARLAGEGRDELLVDALTFPSDGYIAESAARMTGLRLVPVAPADLPSAAGPRTAAALVNHVDFRTGRLHDLPGITAALHDAGALAIWDVCHSAGALPVGLDGHGVDLAVGCTYKYLNGGPGSPAFLYVSERHQAAFDSPLPGWTSHADPFGMTPRYAAADGATRGRVGTPDILSMLALEAALDVWEGVSLNVLRAKSLALTDFFLHCVEAYAPADRVSSLTPVPHAERGSQVALRCAEAPAVMAELITRGVIGDLRRPDVLRFGFTPLYVGFRDAERAARVLGEVLAKIPGGAPADTGGVLA
>NZ_CP048397.1|WP_164252030.1|4131251_4134167_+|Na+/H+-antiporter-subunit-A
MIALVVCHFALAACAGPLVRRLGTRAFLVLALPPAAATVWALTQWDGAAAGRPVTWSWQWIPVYDVSVAMRLDALAELMVLLAAGVGTLTLLYCASYFTDSTPQLAAFAGNLLAFAGSMLALVLADDLISLYVFWELTTVFSYLLIGHDSERKQNRRSALQALTVTTLGGLAMFVGLLILGQAAATYRISAIVADPPAPTLAVSVAVVLVLCGALSKSAIWPFSLWLPNAMAAPTPVSAYLHAAAMVKAGVYLVARLAPAFADFPVWRPVVLVLGGATMLLGGWRALRLNDLKLVLAYGTISQLGLLTVLVGAGNRDAALAGAAMILGHALFKAPLFLVIGIVDHAAGSRDLRRLSGVGRAMPHVCAVAVLAAASMAALPPMLGFAAKEAAFDALLHGDTVDRWLLAVTVAGSALTTAYTLRFVWGAFAGKPGAGDTPVRRVGPAFLAPPALLAVAGLVLGPAIGWTDGLLGAYADAFRAPAHPYHLALWHGLGTAMLLSALAWAVGAVLFAGRSSVTRLSRRTAWPTADRVFGRLLLGLERLALQVTGFVQRGSLSVYLATTLLVMLAGQLAVLFTDHPWRGAMAPRVWDGPLQGAVAAMTCAAALFCLTVSRRMKAVVLAGLTGYGTALLFVVQGAPVLALTQFCVETVSMVVFVLVLRRMPVHFQESVSPWRRAVRVPVALAAAATLGVVVWVAAAARIAEPAGTSMVEEVAEHGLKDVVAGILVDLRAWDTMGESAVLAAAAIGVTSLLYLHRRGDAPAVLEELDGRTAWPTASRPVTGLARGDDAAPERSWLAAGSTLAPEHRSIVFEVVARLIFHPILVLSLYLLFCAENMPGGGFVAGLVAGVALITRYLAGGRFELAEAAPLQPGLFTGLGLFLSTGVGLLGLTEGTVLHAWTYHGHLPVFGDYHLGTTFLFDAGVYLLVLGVVLDIVRALGAKIDRQTERAAHTGVPRGDPAAGPAAGGPAG

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Crispr_ID: NZ_CP048397_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_10

4838404-4838578

Orphan

Consensus_repeat	Method
CGGTGGGTGGTGTCCTCAATCGCCGGACGGGCTTGAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP048397_10

>merge|NZ_CP048397|10|4838404-4838578|PILER-CR
GTCCTCAATCGCCGGACGGACTCAAGATGCGAGCCGGGCGGGCTGCGGTGTGCACGTGCCGGTGGGTGGTGTCCTCAATCGCCGGACGGGCTTGAACAGGCCCGTCCGGGCGGGGCGGGGCGGGATGCGCGTGCGGGGCGGTGGGTGGTGTCCTCAATCGCCGGACGGGCTTGAA

>NZ_CP048397|10|1|4838404-4838578|PILER-CR
GTCCTCAATCGCCGGACGGACTCAAGATGCGAGCCGG	GCGGGCTGCGGTGTGCACGTGCCGGTGGGTGGTGTCCTCA
ATCGCCGGACGGGCTTGAACAGGCCCGTCCGGGCGGG	GCGGGGCGGGATGCGCGTGCGGGGCGGTGGGTGGTGTCCTCA
ATCGCCGGACGGGCTTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_147874196.1\|4827118_4827754_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
NZ_CP048397.1\|WP_164252516.1\|4841172_4842027_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|223417
NZ_CP048397.1\|WP_164252519.1\|4844374_4845538_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|128563
NZ_CP048397.1\|WP_164252518.1\|4843481_4844294_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181069
NZ_CP048397.1\|WP_164252513.1\|4835141_4836896_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP048397.1\|WP_164252521.1\|4847754_4848105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_031229841.1\|4830515_4830953_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
NZ_CP048397.1\|WP_164254817.1\|4823973_4826847_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP048397.1\|WP_164252517.1\|4842269_4843433_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_CP048397.1\|WP_164252520.1\|4845726_4847304_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP048397.1\|WP_147874190.1\|4837734_4838340_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|178901
NZ_CP048397.1\|WP_164252512.1\|4834371_4834998_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP048397.1\|WP_164252510.1\|4831155_4832595_+\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
NZ_CP048397.1\|WP_164252509.1\|4827850_4829500_-\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP048397.1\|WP_147874194.1\|4829547_4830378_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_CP048397.1\|WP_164254820.1\|4847370_4847640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164252522.1\|4848335_4849604_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|380079
NZ_CP048397.1\|WP_164252514.1\|4839156_4839363_-\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl\|CDD\|379386
NZ_CP048397.1\|WP_164252511.1\|4832725_4833706_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP048397.1\|WP_164252515.1\|4839380_4840976_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_147874196.1\|4827118_4827754_+\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	2.18593e-05
NZ_CP048397.1\|WP_164252516.1\|4841172_4842027_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	5.16751e-61
NZ_CP048397.1\|WP_164252519.1\|4844374_4845538_+\|diguanylate-cyclase	gnl\|CDD\|128563	smart00267, GGDEF, diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria.	5.58807e-41
NZ_CP048397.1\|WP_164252518.1\|4843481_4844294_+\|enoyl-CoA-hydratase	gnl\|CDD\|181069	PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.	5.17232e-73
NZ_CP048397.1\|WP_164252513.1\|4835141_4836896_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP048397.1\|WP_031229841.1\|4830515_4830953_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	5.40134e-24
NZ_CP048397.1\|WP_164254817.1\|4823973_4826847_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.62112e-54
NZ_CP048397.1\|WP_164252517.1\|4842269_4843433_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.08517e-31
NZ_CP048397.1\|WP_164252520.1\|4845726_4847304_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP048397.1\|WP_147874190.1\|4837734_4838340_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	4.19332e-95
NZ_CP048397.1\|WP_164252512.1\|4834371_4834998_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.97408e-08
NZ_CP048397.1\|WP_164252510.1\|4831155_4832595_+\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_CP048397.1\|WP_164252509.1\|4827850_4829500_-\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP048397.1\|WP_147874194.1\|4829547_4830378_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	1.25132e-128
NZ_CP048397.1\|WP_164252522.1\|4848335_4849604_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	1.97788e-72
NZ_CP048397.1\|WP_164252514.1\|4839156_4839363_-\|acyl-CoA-carboxylase-subunit-epsilon	gnl\|CDD\|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	5.76735e-06
NZ_CP048397.1\|WP_164252511.1\|4832725_4833706_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.5879e-83
NZ_CP048397.1\|WP_164252515.1\|4839380_4840976_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0

>NZ_CP048397.1|WP_147874190.1|4837734_4838340_-|septum-formation-inhibitor-Maf
MTDQRRRLVLASASPARLGLLRQAGLAPEVIVSGVDEDALSAATPADLARVLAEAKAAAVAARPEAADALVVGCDSVLELDGEAHGKPADAEAATARWKAMRGRSGVLRSGHCVIDTATGRSVSETASTTVRFGEPTDAEIAAYVATGEPLYVAGAFTLDGLSAPFVDSIDGNHGNVLGLSMPLLRKLLSEHGVAITDLWG
>NZ_CP048397.1|WP_164252513.1|4835141_4836896_-|ATP-grasp-domain-containing-protein
MRKVLIANRGEIAVRVARACRDAGIGSVAVYADPDRDASHVRAADEAFALGGDTPAASYLDMAKVLQAAKDSGADAIHPGYGFLSENAEFAQAVLDAGLTWIGPPPQAIRDLGDKVAARHIAQRAGAPLVAGTPDPVSGAEEVVAFAREHGLPIAIKAAFGGGGRGLKVARTLEEVPELYDSAVREAVAAFGRGECFVERYLDKPRHVETQCLADTHGNVVVVSTRDCSLQRRHQKLVEEAPAPFLSPAQNEKLYAASKAILKEAGYVGAGTVEFLVGTDGTISFLEVNTRLQVEHPVTEEVTGIDLVREMFRIADGEELGYDDPPVRGHSIEFRINGEDPGRGFLPAPGTVTLFRPPTGPGVRLDAGVESGSVIGPAWDSLLAKLIITGATREQALQRAARALGEFQVEGMATAIPFHRAVVTDPAFTADPFTIHTRWIETEFVNTIPAFAAPADGDTEDEPGRETVVVEVGGKRLEVSLPSSLGMSLARTGLAAGARPKRRATKKAGSAATGDTLASPMQGTIVKVAVEEGQQVSEGDLVVVLEAMKMEQPLNAHRSGTIKGLTAEIGASLTSGATICEIKD
>NZ_CP048397.1|WP_164252512.1|4834371_4834998_-|TetR-family-transcriptional-regulator
MASSSGAPPRPMRADARRNYERVLGEARSAFAEHGTDASLEDVARRAKVGIGTLYRHFPTRHALMNAVFQEALADLLDRSRELADADRPCHALVAWLRALITHAGEYRGLSRALMSASHDASSALTQCSSGLRTAGELLLVRAQESGAVRADTSIDDLMQLTNAIALAAEQSPTDPELADRLLTLTLTGLKGPADPAAAPNTPGERAR
>NZ_CP048397.1|WP_164252511.1|4832725_4833706_+|DeoR-family-transcriptional-regulator
MFAAERRQLILEMVRANGAVSLRELARVVQTSEVTVRRDVRALEAEGLLDRRHGGAVLPGGFTRESGFPQKSHLATAEKTAIADLAASLVEEGEAVVVGAGTTTQELARRLARIPGLTVVTNSLLVAQALAHANRVEVVMTGGTLRGSNYALVGSGAEQSLQGLRVSRAFLSGSGLTAERGLSTSNMLSASVDRALVQAAAEVVVLADHTKLGTDTMFQTVPTDVITRLVTDDPPAHDDRAATELQALADQGVQITVAGGAAGSGPGGEGAPPGRQPRRDTPLPGQRRTHGGAGAGPQTRRGASPSTGMLVDQPAERARVADLRHR
>NZ_CP048397.1|WP_164252510.1|4831155_4832595_+|NAD(P)H-quinone-dehydrogenase
MTRIVIIGGGPGGYEAALVAAQLGAEVSVVDCDGLGGASVLTDCVPSKTLIATAEVMTTFDSSYEELGIIVADDTPPLEQAARVVGVDLGKVNRRVKRLALAQSHDITASVTRAGARVLRGRGRLDGRQATDGSRRVIVTSADGSEESLTADAVLIATGAHPREIPDALPDGERILNWTQVYDLTELPEELIVVGSGVTGAEFAGAYQALGSHVTLVSSRDRVLPGEDPDAAAVLEDVFRRRGMNVMSRCRASSAKRVGDRVEVTLADGRVISGTHCLMAVGAIPNAEGMGLEEAGVRVKDSGHIWTDRVSRTSAPGVYAAGDVTGIFALASVAAMQGRIAMYHFLGDAVAPLNLKTVSSNVFTDPEIATVGYSQSDVDSGKIDARVVKLPLLRNPRAKMQGIRDGFVKILCRPGTGIVVGGVVVAPRASELIHPISIAVDNNMTVEQIANAFTVYPSLSGSIAEVARQLHSRKSDDEG
>NZ_CP048397.1|WP_031229841.1|4830515_4830953_-|gamma-glutamylcyclotransferase
MSLYAAYAGNLDARLMSRRAPHSPLRGTGWLNGWRLTFGGEQMGWEGALVTLVEAPRSQVFVALYDIAPMDEDSMDRWEGVGLDIYRRMRVRVDTLDGKEPAWLYVLNGYEGGLPSARYLGELAEAAESAGAPHDYVMELRKRAC
>NZ_CP048397.1|WP_147874194.1|4829547_4830378_-|purine-nucleoside-phosphorylase
MNASVIPATADGSADPHAAASAAAVRLRELTGAETHDVALVMGSGWAPAVDALGAPEAEFPVTELPGFPPPVVAGHGGTIRSYAIAEKRALVFLGRTHYYEGRGVAAVAHGVRTAVAAGCKTVVLTNGCGGLREGMRPGQPVLISDHINLTAASPIVGANFVDLTDLYSPRLRALCKEVDPALEEGVYVQFPGPHYETPAEINMVRVLGGDLVGMSTVLEAIAAREAGAEVLGISLVTNLAAGLSGEPLNHEEVLQAGRDSATQMGALLAQVLERI
>NZ_CP048397.1|WP_164252509.1|4827850_4829500_-|phospho-sugar-mutase
MQQDLIARAEAWLAEDPDADTRRELRELVGSGDLDSLAERFSGTLQFGTAGLRGELGAGPMRMNRSVVIRAAAGLAAYLKATGQGGGLVVIGYDARHKSADFARDTAAVMTGAGLRAAVLPRPLPTPLLAFAVRHLGAVAGVEVTASHNPPRDNGYKVYLGDGSQIVPPMDGEIAAGIDAVGPLDSVPRPDDGWEILGDEVLAAYLERTDAVLSAGSPRTARVVHTALHGVGTQTLNAAFARAGFPAPVPVAEQAEPDPDFPTVAFPNPEEPGAMDLAFATARRAAPDIVIANDPDADRCAVAVPDADAESGWRMLRGDEVGALLAAHLVNKGATGVFAESIVSSSLLGRIAEAAGVGYEETLTGFKWIARVEGLRYGYEEALGYCVDPDGVRDKDGITAALLVAELASELKEQGRGLADLLDDLALAHGLHATDQLSARVKDLSLIARAMDRLRDDPPTVLAGLTVTSSEDLSAGASGLPPTDGLRYHLDGAYRARVIVRPSGTEPKLKCYLEAVIPVRTAADLPSARTVGTELLTSLKRDLAEAAGI
>NZ_CP048397.1|WP_147874196.1|4827118_4827754_+|PH-domain-containing-protein
MTSPDQSPEPAYAERVFRSPAGIAGGVLLLALGAWVGIDALVRGHGRTPWLALAALLLAVPLVVAFTMRPAVFANDDRLRIRNPFRTILLPWASVADVRASYSSEVFTKDGAKYQLWAVPVSLRRRKRAARRQSQRAHDDPHGRTSVNVDVTDSLARAADADHTVAGLREQAERCASRDTARGEPQVRWAYEVIAPALAGLVVMLVLLATG
>NZ_CP048397.1|WP_164254817.1|4823973_4826847_-|SpoIIE-family-protein-phosphatase
MRCALHHAVGGLGGPGGMVHLRSLWQDKGLHLMLTDGLPPAGTKRWQDLSGKDSTVPARAARSGEYAWSPAPAFADRPSGRGRAAAGPPASEYPAPPEDAAPGVLASCGLASVPLLAPTGPLGLMGVLSVLTPTGEEPTAEQRAFLEEVARGAAGHLARSLAAPRGSNPELWPEPPDGSRLQQALKAVRVGAWDWNIRTGELDWDEAAMTVLGIDPTTFDHRIETWLGLVHPEDLPWVMLDTDEAIRTRSVYGVEYRVCRPDGTFGWAQARARVILGEDGEPHHMVGTVWDTTQTHVAREHVDHALRHMSDGFLAVDTDWRITFTNIEAQRALGSSHELLGRVLWDIPFAREPGLEDLCRQAVANHRPVGLDVLSPANQRWYHLRLVPVPGGLTVYLTDVTEKRAREAERLATDRAATERAARIAELTTALAEALTTDDVVKAVAQHVMQPFRATGLVVVAFEGDLTRLVGSVGYPAADLETILSFPLTTATPVSDVLGTRAPLFISSLAEMKMRYPALADVPANGRQAWAFLPLIASGRSTGCCVISFDIARLLGDEERTLLVALSGLLAQALERARLYDSEHLRAKELQRGLLPRHLPSPPAATAAARYLPSDRRLDVGGDWYDLIPLSAERVALVIGDVMGHGLSEAATMGRLRTAVRTLADLELPPDEILSQLNGIVSDLGDDFYATCLYAVYDPTTHTCVFASAGHLPPVVVHPDHTARVPEISANPPLGAAVPPFDTVELAVPDGGLLALFTDGLVEAAGRDIEAGTRELTRVLTAALRADGDLSLDQLCDTVVSALLPAGEQTADDAVLFIARLRRLAAEDIASWPLPQDPVAAGQAREHIRTQLDAWDLDDLAMTTELLASELVSNVIRHARGPVRLRLLRGRTLVCEVSDGSLTTPHVRRASATDESGRGLQLVSALAQRWGARYTASGKSIWTEQPLPVPPATAPTP
>NZ_CP048397.1|WP_164252514.1|4839156_4839363_-|acyl-CoA-carboxylase-subunit-epsilon
MIKVVRGNPTAEELAAALAVVRARAAAGAELTPGAAPPAPGWSDPARVARRETRRPGPRAWARTYWPG
>NZ_CP048397.1|WP_164252515.1|4839380_4840976_-|acyl-CoA-carboxylase-subunit-beta
MSEPEIDRGTEHSHTTAGKIADLQRRIEEATHAGSARAVEKQHAKGKLTARERVELLLDEGSFVELDEFARHRSTNFGIEKNRPYGDGVVTGYGTVDGRPVCVYSQDFTIFGGSLGEVYGEKIVKVMDFALKTGCPVIGINDGGGARIQEGVVALGLFAEIFRRNVHASGVVPQISLIVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNTTSGVAHHLAGDEKDAVEYVKSLLSYLPSNNLSEPPAFPEVAELDATAEDLELDTLIPDSANQPYDMHTAIEHVLDDAEFLETQALFAPNIITGFGRVEGYPVGIVANQPLQFAGCLDIDASEKAARFVRTCDAFNIPVITFVDVPGFLPGVDQEYGGIIRRGAKLIYAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIAAAEDQDATRAGLIAEYEDALLNPYVAAERGYVDAIILPSETRAHLVKGLRQLRTKRESLPPKKHGNIPL
>NZ_CP048397.1|WP_164252516.1|4841172_4842027_+|biotin--[acetyl-CoA-carboxylase]-ligase
MTEHNAAGSRWTDLERPPLNTPALRRGLIVPGRLWTSLDVVTATGSTNSDLAARADELPEGAVLVAEEQTRGRGRMDRKWSAPARSGLFLSVLLRPGPDVPVERWGWLPLLTGVAVATAVARAAGVDTALKWPNDLLVKVGGEERKAGGILAERAADDAVVVGIGLNVSLTESELPVPGAGSLALANAVSVDRDPLLRAVLRGVEHWYGTWRDAAGDPAASGLQEAYAAGCATLGRPVRAELPGERQLVGDAVAIDGDGRLVIATEGGGQEAVGAGDVVHLRAA
>NZ_CP048397.1|WP_164252517.1|4842269_4843433_+|adenylate/guanylate-cyclase-domain-containing-protein
MRVDDTTSGGGDEKPPSDSSGHPTPHHAVDHTAEPTDDPLAIRLEQLILGAERRYTPFQAARTAGVSMDLASRFWRAMGFADIGQARALTEADVLALRRLAGLVEAGLLSEPMAIQVARSTGQTTARLAEWQIDSFLAGLTEPPEPGMTRTEVTYPLVELLLPELEEFLVYVWRRQLAAATGRVVQAADDEEMVDRRLAVGFADLVGFTRLTRRLEEEELGELVEAFETTCADLVAAHGGRLIKTLGDEVLYAADDAGTAAEIALRLIETMTHDESMPALRVGIAFGTVTTRMGDVFGNTVNLASRLTSIAPKDAVLVDGALAEELIRTGDTPASEAEAAEEAATAEKAGEEPPSYRFAIQPMWQRPVRGLGVVEPWLLTRRPKPDA
>NZ_CP048397.1|WP_164252518.1|4843481_4844294_+|enoyl-CoA-hydratase
MGAVGAESDQRFGEFVAVRRHGHVAELVLDRPKAMNAVSTEMARSIGAACAALGADREVRVTVLTSTHARAFCVGADLKERNSLSDAELVRQRPTARAAYTGVLELPMPTIAAVHGFALGGGFELALSCDLIVADPTAVVGLPEVSVGVIPGGGGTQLLPRRVGAARAAELIFTARRLEAREAHELGLVDQLAAEGADRDEALALASRIAGNSPVGLRAAKRALRLGHGLDLRAGLEVEDAAWRSVAFSGDRTEGVAAFNEKRKPQWPGE
>NZ_CP048397.1|WP_164252519.1|4844374_4845538_+|diguanylate-cyclase
MGEDARLRAVVELAQAMASAQTSNESWRAAALGARDALAGSFAALSVWERDLGRLKVLVNAGDLAEGEEEFPGDESYPVHRFPEIAEFLHERWAGGGEPNAWVETVDGPATATGRPGYCHQRVAALRRRGRGCCVVAPIVLHGRAWGELYVARPLGGRVFGRDDADFATVIASVVASGIAQTERLEEVRRLAFTDPLTGLANRRAVDARLDEAVARHRGDGAVVSLVVCDLNGLKRVNDTHGHAVGDRLLERFGSLLSVCGARLPGALAARLGGDEFCLLTVGPPADAVVEVADELCRRAAELELGEGVACGVASTGDPIGPLPSARRLFRLADAAQYRAKAARSVGPVVAGRDGGVVRLADEPPRAPSGVSSGERRRFRGMTRGSG
>NZ_CP048397.1|WP_164252520.1|4845726_4847304_+|histidine-ammonia-lyase
MDMHTVVVGPAGTTAEDVVAVARGNARVELSADALSALVAAREIVDALAAKPEPVYGVSTGFGALASRAIGPDLRGRLQRNIVRSHAAGMGPRVEREVVRALMFLRLKTVASGHTGVRPLVAQTMADVLNAGITPVVHEYGSLGCSGDLAPLSHCALTLMGEGDAEGPDGVLKPAGELLAAHGIRPVELREKEGLALLNGTDGMLGMLVMALADLQRLYTSADITAALTLEALLGTDKVLAPELHAIRPHPGQGASADNMLRVLAGSGLTGHFQEDAAPRVQDAYSVRCAPQVAGAGRDTLAYARIVADRELASSVDNPVVLLGGTSQGEVSGGGRVESNGNFHGAPVAYVLDFLAIVAADLGSIAERRTDRLLDKNRSHGLPAFLADDPGLDSGLMIAQYTQAALVSEMKRLAVPASVDSIPSSAMQEDHVSMGWSAARKLRTAVGNLTRVVAVELYAATRAIELRRGLMPAPASLAVIEALRAAGIEGPGPDRFLAPDLAAADAFVREGRLVAAVEPVTGPLA
>NZ_CP048397.1|WP_164254820.1|4847370_4847640_-|hypothetical-protein
MSVRRPLLTAVAAGILLCAMWFVPSANATSEQSTGRQQSAAADQEDSAGLALADTGAGVDTTPYLIAGTAFLCVGAAFVAHSRRGASAL
>NZ_CP048397.1|WP_164252521.1|4847754_4848105_+|hypothetical-protein
MSTPDTSRFVRLHVELVLEIGDPQALTAAALTRIATDDSMPDEEREHAGSAVGEDAAEALAYLVEPSELVGEVPGVELTQASWSSELIDYDPETVEWDLDGYDEAEGDNGDVDDGR
>NZ_CP048397.1|WP_164252522.1|4848335_4849604_+|L,D-transpeptidase-family-protein
MEKRVMTNGKRRKGLTAASALLGGVLVLSACSGGDGGKDSGAERSKDSQAQVDEAAAKDTSEAQITISPKNGADNAGINNDAKVTVTKGTLTKVEMTTEDGAAVKGTLAADAKSWKPDGQLERSTTYKIVATAKDSKDREAHENSSFTTVSPNNSFIGNFTPEDGSTVGVGMPVSLNFDKGITNKAAVQGGITVTSSSGQEVVGHWFNSQRLDFRPEQYWQGGSTVTLKLALDGVEGADGVFGVQQKTVTFKIGRNQVSTVDTKAKTMTVQQDGKTIRTIPISAGSPENPTYNGQMVISEKFKETRMNGATVGFTDDDGKGEYDIKDVPHAMRLSTSGTFIHGNYWGADSIFGSTNTSHGCVGLNDAKGANDPDQPGAWFFDNSIVGDVVVVKNSPDKTIQPDNGLNGWNLSWADWQAGSAA

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Crispr_ID: NZ_CP048397_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_11

6248744-6248833

Orphan

Consensus_repeat	Method
TGTCCTCAATCGCCGGACGGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_11

>merge|NZ_CP048397|11|6248744-6248833|CRISPRCasFinder
TGTCCTCAATCGCCGGACGGGCTGGTGGTGGAGCGGGTCGGATCCGGCCCGACCGCCCGTCGTGGGGTGTCCTCAATCGCCGGACGGGCT

>NZ_CP048397|11|10|6248744-6248833|CRISPRCasFinder
TGTCCTCAATCGCCGGACGGGCT	GGTGGTGGAGCGGGTCGGATCCGGCCCGACCGCCCGTCGTGGGG
TGTCCTCAATCGCCGGACGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164253344.1\|6242588_6244040_+\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|259798
NZ_CP048397.1\|WP_164253346.1\|6245589_6246951_-\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|253386
NZ_CP048397.1\|WP_164253349.1\|6250650_6252051_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP048397.1\|WP_078074482.1\|6247106_6247532_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|274650
NZ_CP048397.1\|WP_164253353.1\|6253800_6254256_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP048397.1\|WP_164253341.1\|6237613_6238435_-\|peptidyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|239108
NZ_CP048397.1\|WP_164253352.1\|6252784_6253639_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379262
NZ_CP048397.1\|WP_164253351.1\|6252539_6252788_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP048397.1\|WP_147875127.1\|6241937_6242447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253356.1\|6257117_6257768_+\|nucleoside/nucleotide-kinase-family-protein	unknown	unknown	gnl\|CDD\|236442
NZ_CP048397.1\|WP_164253347.1\|6247614_6248706_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP048397.1\|WP_164253342.1\|6238506_6239181_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP048397.1\|WP_164253345.1\|6244199_6245387_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|365866
NZ_CP048397.1\|WP_164255089.1\|6254364_6255771_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349894
NZ_CP048397.1\|WP_164253354.1\|6255828_6256029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253355.1\|6256402_6256795_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NZ_CP048397.1\|WP_164253340.1\|6236707_6237499_-\|DUF4142-domain-containing-protein	unknown	unknown	gnl\|CDD\|379301
NZ_CP048397.1\|WP_164253348.1\|6249123_6249888_+\|pyrimidine-reductase-family-protein	unknown	unknown	gnl\|CDD\|184482
NZ_CP048397.1\|WP_164253350.1\|6252083_6252491_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583
NZ_CP048397.1\|WP_164253343.1\|6240941_6241781_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200579

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164253344.1\|6242588_6244040_+\|flotillin-family-protein	gnl\|CDD\|259798	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. The flotillin (reggie) like proteins are lipid raft-associated. Individual proteins of this SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. In addition, microdomains formed from flotillin proteins may be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and interact with a variety of proteins. They may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and in cancer invasion, and metastasis.	3.0344e-43
NZ_CP048397.1\|WP_164253346.1\|6245589_6246951_-\|DUF839-domain-containing-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	1.51087e-107
NZ_CP048397.1\|WP_164253349.1\|6250650_6252051_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP048397.1\|WP_078074482.1\|6247106_6247532_-\|OsmC-family-protein	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	1.58296e-59
NZ_CP048397.1\|WP_164253353.1\|6253800_6254256_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	2.03141e-17
NZ_CP048397.1\|WP_164253348.1\|6249123_6249888_+\|pyrimidine-reductase-family-protein	gnl\|CDD\|184482	PRK14059, PRK14059, pyrimidine reductase family protein.	3.08926e-93
NZ_CP048397.1\|WP_164253341.1\|6237613_6238435_-\|peptidyl-tRNA-hydrolase	gnl\|CDD\|239108	cd02430, PTH2, Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.	1.67268e-10
NZ_CP048397.1\|WP_164253352.1\|6252784_6253639_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.03247e-08
NZ_CP048397.1\|WP_164253351.1\|6252539_6252788_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	3.84092e-16
NZ_CP048397.1\|WP_164253356.1\|6257117_6257768_+\|nucleoside/nucleotide-kinase-family-protein	gnl\|CDD\|236442	PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed.	1.26021e-83
NZ_CP048397.1\|WP_164253347.1\|6247614_6248706_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	5.27279e-56
NZ_CP048397.1\|WP_164253345.1\|6244199_6245387_+\|trypsin-like-serine-protease	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	2.25697e-10
NZ_CP048397.1\|WP_164255089.1\|6254364_6255771_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349894	cd05642, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	0
NZ_CP048397.1\|WP_164253355.1\|6256402_6256795_-\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.81595e-41
NZ_CP048397.1\|WP_164253340.1\|6236707_6237499_-\|DUF4142-domain-containing-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	4.11487e-17
NZ_CP048397.1\|WP_164253342.1\|6238506_6239181_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.41741e-35
NZ_CP048397.1\|WP_164253350.1\|6252083_6252491_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	3.85311e-76
NZ_CP048397.1\|WP_164253343.1\|6240941_6241781_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200579	cd10955, CE4_BH0857_like, Putative catalytic NodB homology domain of uncharacterized BH0857 protein from Bacillus halodurans and its bacterial homologs. This family is represented by a putative polysaccharide deacetylase BH0857 from Bacillus halodurans. Although its biological function still remains unknown, BH0857 shows high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Both BH0857 and SpPgdA belong to the carbohydrate esterase 4 (CE4) superfamily. This family also includes many uncharacterized bacterial polysaccharide deacetylases.	5.31642e-67

>NZ_CP048397.1|WP_164253347.1|6247614_6248706_-|cell-division-protein-ZapE
MGTVSASPALPASRPVSLCARTPRVAAERLVGEMVPPPRFDSVRFDTYVPDPNQPSQTEAVTVLSTFAAGLGGTADTTQGKRRWFGRKSAGTAHTAGPRGVYLDGGYGVGKTHLLASLWHATPAAPEQKAFGTFVELTNLVGALGFQQTVKTLGGHRLLCIDEFELDDPGDTVLVSSLLSRLVEAGVALAATSNTLPGKLGEGRFAAADFMREIQGLSARFRPLRIDGEDYRHRGLPEAPAPLTTEQVTRAAHATGAASLDDFPSLLAHLATVHPSRYGALTEGLRAACFTDVGPVPDQSTALRLVVLADRLYDREIPVLASGLPFDRLFGEEMLNGGYRKKYFRAISRLTALARDAKGLLAE
>NZ_CP048397.1|WP_078074482.1|6247106_6247532_-|OsmC-family-protein
MATTRQAHTVWEGDLLKGSGVVTFDSSGIAEQPVSWASRAEQANGKTSPEELIAAAHSSCFSMALSNGLAKAGTPPTKLTTQAEVTLVPGTGITGVHITVQGEVEGLDEAAFVKAAEDAKANCPVSQALAGTSITLTASLA
>NZ_CP048397.1|WP_164253346.1|6245589_6246951_-|DUF839-domain-containing-protein
MSATRRQVLATGASVAGIAFTGAVSELFAGTAVAQEMGRSGYGPLVPDPDGLLDLPKGFRYRVLSRTGDELRSGEGEVPSNPDGMAAFAGRRGRVHLVRNHENRADGKIGVPTVEGLTYDPMGKGGCTALELDGQGNVLGERVAIAGTAVNCAGGPSPWGTWLTCEETEDKAGTNGYTKDHGFIFEVDGADPHRTGAVPLKAMGRFQHEAIAIDPRTGVVYETEDAFERPFGLFYRFLPEKPLGGLGSLRAGGTLEAMRVPGVPDLSVVQETGASFDRVEWVPVPDSQAKETPIRLQDFGKKGITHAQKLEGCYWGDRAVYFVSSFAKSAEGSAADHYGQVWKYEPQRRRLTLVIAFGPDTDIQMPGESPDNICLAPSGGLMVCEDGGGAQHVYGLTRHGELYEMARAAEDIGTPEEPEWGEFAGVTFAPDGDTMYLNSYTPGKTFAITGPWR
>NZ_CP048397.1|WP_164253345.1|6244199_6245387_+|trypsin-like-serine-protease
MSHRRISKSKAILAGAGAVGVAAAAILLPNANASQSGTDDGAGDGARQNAKTVSAASAPELVARLSSQLGEEYAGAYYDAQKKQVVVNVADGDDGESTARVRDAGAVARSVQNSMGELRSATGTLSRDATIPGTAWAVDPRTNQILVTADTTVTGERWDTLESTVRSLGDGVARIQKSAGEFKPFLEGGDAIFGGGARCSLGFNVTTQDGTPGFLTAGHCGVAAEQWSEDQNGAPVGTVQAATFPGDGDFALLTYDDPATQAPSEVDVGNGQTVPISQAGEAAVGLEVIRMGSTTGLADGTVTGLGATVNYAEGSVSGLIQTNVCAEPGDSGGPLFTADGTAIGLTSGGSGDCTSGGETFFQPVTTTLAAVGAEIGAGGADAGGGEEGVEAGSGH
>NZ_CP048397.1|WP_164253344.1|6242588_6244040_+|flotillin-family-protein
MSPVIIAVAGVVVLLVLLALVVITRYKVAGPSEAFIITGRRGESSTDPVTGRVSTDNSGQKVVVGGGVFVVPFVQQKFTLDLSSRHIPVAVRGAVTLRGVKAHLEGVAIVKVGGNEDAIRAAAQRFLRQQKGIVGFTQEVLSGALRAIVGRMAVEDIIRDRAAFAGQVAEEAEASLSGQGLILDAFQIQDITTEGSYLEDLGRPEAARARQEADIAEAIAKRASEQARLKAAEEIAVAERTFYLKQAEIKVETEAAKAKANAAGPLAEAARQQEVLGEQEKVAQRQAALTDRQLDTQVRKPADAARYQAEQEAEARRIAQVKEAEADAERSRLTGEGEKLRRAALAEAVRIEGEAEADAITARGSAEAGAMRKKADAFAQYGDAAVLQMLVEVLPAVVAKASEPLSAVDKLTVISTDGASQLSRTVTDNVAQGMELLSSTTGVDLAELLKGLTRRAGSTVPAKAAGAGTAKAPESNKKIEISG
>NZ_CP048397.1|WP_147875127.1|6241937_6242447_+|hypothetical-protein
MDVFLGLGIAGVVLLAVALIFDGIFEGLFGGVLDGLFAGLLSLPVVAGFVAMLGFGGAIVLGTTDLGAGPAVAAGAVAGAVTGWLAWKLSRVLMRDQTDATPRGADLLGTPGSVITAIPADGYGEVMLRVAGQPVKFAAKSAVPLARGAEVWVESTLSSTSVGVRPVER
>NZ_CP048397.1|WP_164253343.1|6240941_6241781_-|polysaccharide-deacetylase-family-protein
MPKYLLRVIALATLGAALAGCGADTDARPTAGPSPGPASRQPAGPERPAVTPVFLRGADPTGTTGAVTAAKTVALTFDADMTADQGPRAARGERFDNPTLISSLRRLEVPSTIFMTGRWVEEYPFQAREIGSDPLFEVANHSYSHHSFTADCHGLKALGEKDMAADVERAFGAFRKAGVRQVVPYFRFPGGCYDRSTLRTLAPAGLTAVQWDVVSGDAFATDADTVAEQVLADVRPGSVVVMHCTMSAAPVTDEAVRKIVPVLRERGYRFVKVSELIKG
>NZ_CP048397.1|WP_164253342.1|6238506_6239181_+|AIM24-family-protein
MKSDLFSSENMAQQATTPGMSLQNAKSVKYAVNGEMHARQGSMIAFRGNLQFERKGQGIGGMLKRAVTGEGLPLMAVKGQGEAWFAHEAANCFIVDIDQGDTLTVNGRNVLCFDSTLSYEIKTVKGAGMTGGGLFNSLFSGYGKLAIICEGNPIVIPVSPQAPVYVDTDAVVGWSAQLSTSLHRSQSVGSMIRGGSGEAVQLMLQGEGFVIVRPSEVTSQAAGS
>NZ_CP048397.1|WP_164253341.1|6237613_6238435_-|peptidyl-tRNA-hydrolase
MSIDDTAAGAAGPADDRAGDPADSPFRHEQTARDEAPQFVLPLVVRIEKAAPPTRTDALEAAARAVLVILADERSTGDGEWARAMRDWQDARIRKVVRRARGAEWRKASLLPGITVGGPGPDAAAAREPVAAEGPGFAPYAEVRVFPPVPLDGWPKELAKLQVSGTDLDDPEDPPATADPAAPVLWLSPGIAMSAGKAMAQAGHGAQLAWWELSETDRKAWQEAGFPLSVRTPDAARWRQLTRSGLPLVRDAGFTEIAPGSSTVVADHPALRR
>NZ_CP048397.1|WP_164253340.1|6236707_6237499_-|DUF4142-domain-containing-protein
MLRRINGTALIIAALVATVGALAFPVWSYADRSGTGEANLAASSVATQWGPLSATDRDFLVKVRLAGLWELPAGQQAIERAPSQAIKDAGDHLVVGHTDLDVRARDVAAKLGVALPNQPNEQQQGWLRELSAATGAEYDRKFANLLRNAHGKVFALIAEVRHTTRNTLIRQLATDANQTVLDHITMLEATGLIDFDEIAREAAGTKTASPTGPPPPNGSLPPSPPAASPTGDSSFTSRPSTQPGAPTAVNTNRPAPPSVEASP
>NZ_CP048397.1|WP_164253348.1|6249123_6249888_+|pyrimidine-reductase-family-protein
MRRLYPVPSEPTPDHEWALDGLAEAYAYPEPREDRSWLRANMVSTLDGAAHHDGRSQAISSDADMRIFGTLRALADVVLVGAETVRLEGYRPARAREAFAERRAAAGQAPAPAIAVVSASLNLDFSLPLFVSPLVQTLILTGAAASPDRIRAAEQAGARVLVAGDGPGVEPPRVIAALAEMGLKRQLTEGGPRLLGQFVAAGALDELCLTVSPLLAAGGAQRITGGPDLADPERFALAAVLEEGGFLFTRYRRI
>NZ_CP048397.1|WP_164253349.1|6250650_6252051_+|UDP-N-acetylmuramate--L-alanine-ligase
MAPGIPTAMERPHFIGIGGAGMSGIAKILTQRGAKVAGSDAKESGTAEALRALGATVHIGHAAEHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRSDALAALMGGGLRSIAVAGTHGKTTTTSMLAVALTELGLDPSYAIGGDLDGPGTNASHGDGEIFVAEADESDRSFQKYDPEVAIVLNVELDHHANYASMDEIYESFETFVGKIVPGGTLVIAADQPGAVELTAKVGDLSTVKVVTYGEAADADVRVHKVTARGLTSEVTVVLAGRFLTFTVSVPGRHYAHNAVAALAAGVALGIPAHNLASALGKYTGVKRRLQLKGEANGVQVIDSYAHHPTEMTADLEAMRAAAAPGSRLLVVFQPHLFSRTQELGTEMGQALALADASVVLDIYPAREDPIPGITSALIIEAATAAGADVRSVHDKGAVPEAVAGMAKPGDLVLTMGAGDVTDLGPEILARLSH
>NZ_CP048397.1|WP_164253350.1|6252083_6252491_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MAYDIDKPDEQWREELSPAEYAVLRQAGTEPAFVGEYTDTKTAGVYSCRACGAELFRSDTKFESHCGWPSFYDPKDSDAVELIEDRTMGMVRIEVRCSRCGSHLGHVFEGEGYPTPTDQRYCINSISLRLTPDEA
>NZ_CP048397.1|WP_164253351.1|6252539_6252788_-|DUF397-domain-containing-protein
MSTTELAWFKSSYSSGSGDDCVEVALSWHKSTYSTGDGDSCVEVAACPTTIHVRDSKVTEGPQLALAPGAWTSFVTYAAAEA
>NZ_CP048397.1|WP_164253352.1|6252784_6253639_-|helix-turn-helix-domain-containing-protein
MTDGVGGTGGGVTGGEEPETSDSLKAFGAVVKAFRKRARLTQEEFAPRVRYSVPTVASIEQGRRFPTLEFVERAEEVLDAFGALRGAARHLARQPGLARWFRQWAKLEAEALSLYTYECRLIPGLLQTEAYARKLFVNQLPPLGDDQIETQMAARTERQRLLRERPNTSYSFILEEHLFLRNTGGDDVTRELIDHILTLGERRNIEIQLMPQVKEDHAGLHGPMRLLETPDNRWLAYCEGQESGQLITDPKVVSTLQMRYARMRSQALPLEDSLSLLRQMRGAL
>NZ_CP048397.1|WP_164253353.1|6253800_6254256_+|ATP-binding-protein
MNAPVTPQQSGTVRLFTQRFSSTPLGARLARHLAVHQLHAWNIPYGSEVSEAAALVVAELAANAATHGRVPGRDFELGLRLATAPDVLRIEVSDTRGERRPPGPGRLPPTPPVDARSGRGLLIVEALASRWEVVDRVPVGKTVRAELDLPH
>NZ_CP048397.1|WP_164255089.1|6254364_6255771_+|M20/M25/M40-family-metallo-hydrolase
MPRRRTVLASAAVTAAGVPLIVSAGQAVASGRGREHGGAAATAQAPDRELRKLLGEIDADRIEATVRRLAAFGTRHTLSVQDDPERGIGAARDWILAEMKKYAAVSGGRMTAELQSYIQEPASRIPVATKITNVVATLRGSVDPDRVYVVAGHYDSRVTDVMDATSDAPGADDDASGVALVMELARVLAKRRPAATIVLVAVAGEEQGLYGSGYAAEQFKARGADVQGMFTNDIIGSSRADDGTRDPYTVRLFAEGVPTSETPEQANTRRSVGGENDSATRQLARFVSDVGDNDATGMNVRVVYRRDRYLRGGDHIPFLEQGYPAARFTEPAEDFAHQHQDVRVEDGKQYGDLPEFCDFDYIARVTRVNGAVLWTLAQAPGTPRDARIVTSNLTNDTELKWTRGTEPDLAGYEVVWRETAEPEWTHVIKVGLTTTHTVDLSKDNVFFGVRAVNRDGKRSPVAFPMPGN
>NZ_CP048397.1|WP_164253354.1|6255828_6256029_-|hypothetical-protein
MRIAEELLFALPPGRQSARIRHDNALVYGVTGQGFTWRPPEGLVPEGSEFAMKHPSTFRVTTPAAS
>NZ_CP048397.1|WP_164253355.1|6256402_6256795_-|VOC-family-protein
MPHIALVTLVVRDYDEAIAFYTGPLDFELVEDTDRGDGSRWVVVRPHGGAGALLLARAADDAQRARVGAQTGGRVGFFLHTDDFAGDHARMTAAGVRFLEEPRHEPYGSVAVFEDLYGNRWDLLQPATAA
>NZ_CP048397.1|WP_164253356.1|6257117_6257768_+|nucleoside/nucleotide-kinase-family-protein
MDARQFDVLTRRARQLAAPGQRRILGIAGAPGAGKSTLADDLVAALGGSAVLVPMDGFHLAQAELRRLGRADRKGAPDTFDAVGYAALLARLRAPAPGVVVYAPAFDRALEEAVAGSIPVGPDVPLVVTEGNYLLHDGGDWAPVRALVDEAWFLELDPVVRVRRLVDRHVRFGKERPHAERWVRDSDETNARLVAQGRHRADLVVQVTAGPGPPTP

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Crispr_ID: NZ_CP048397_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_12

6573342-6573451

Orphan

Consensus_repeat	Method
CCGCGACGGGGTGTGTCCTCAATCGCCGGACGGGCTTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_12

>merge|NZ_CP048397|12|6573342-6573451|CRISPRCasFinder
CCGCGACGGGGTGTGTCCTCAATCGCCGGACGGGCTTGAAAAATCCGCCGACCGGGCTGGAAGGGGCCGCCGCGACGGGGTGTTGTCCTCAATCGCCGGACGGGCTTGAA

>NZ_CP048397|12|11|6573342-6573451|CRISPRCasFinder
CCGCGACGGGGTGTGTCCTCAATCGCCGGACGGGCTTGAA	AAATCCGCCGACCGGGCTGGAAGGGGCCGC
CGCGACGGGGTGTTGTCCTCAATCGCCGGACGGGCTTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164253563.1\|6580676_6581396_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP048397.1\|WP_164255141.1\|6574820_6575279_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP048397.1\|WP_164253558.1\|6569395_6570235_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_CP048397.1\|WP_147876457.1\|6561513_6562026_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239535
NZ_CP048397.1\|WP_164253564.1\|6581728_6582562_+\|M55-family-metallopeptidase	unknown	unknown	gnl\|CDD\|176450
NZ_CP048397.1\|WP_164253555.1\|6563018_6565058_-\|protein-meaA	unknown	unknown	gnl\|CDD\|239653
NZ_CP048397.1\|WP_164253567.1\|6587318_6587666_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253566.1\|6585973_6586939_+\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132882
NZ_CP048397.1\|WP_164253560.1\|6573658_6574690_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP048397.1\|WP_164255143.1\|6582563_6583952_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|181163
NZ_CP048397.1\|WP_164253562.1\|6578157_6580626_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|369272
NZ_CP048397.1\|WP_164253554.1\|6562029_6563022_-\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP048397.1\|WP_164255139.1\|6572644_6573256_+\|adenylosuccinate-lyase	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253559.1\|6570401_6572192_-\|3-hydroxyacyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|224170
NZ_CP048397.1\|WP_164253556.1\|6565059_6566397_-\|crotonyl-CoA-carboxylase/reductase	unknown	unknown	gnl\|CDD\|188164
NZ_CP048397.1\|WP_164253553.1\|6560304_6561510_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP048397.1\|WP_164253557.1\|6566760_6569322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP048397.1\|WP_164253561.1\|6575548_6577987_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP048397.1\|WP_164253552.1\|6559478_6560135_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NZ_CP048397.1\|WP_164253565.1\|6583964_6585977_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164253563.1\|6580676_6581396_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.65451e-10
NZ_CP048397.1\|WP_164255141.1\|6574820_6575279_+\|SRPBCC-family-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	1.11557e-07
NZ_CP048397.1\|WP_164253558.1\|6569395_6570235_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	5.08988e-18
NZ_CP048397.1\|WP_147876457.1\|6561513_6562026_-\|MaoC-family-dehydratase	gnl\|CDD\|239535	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.	1.9397e-68
NZ_CP048397.1\|WP_164253564.1\|6581728_6582562_+\|M55-family-metallopeptidase	gnl\|CDD\|176450	cd08663, DAP_dppA_1, Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized putative peptidases.	1.43069e-113
NZ_CP048397.1\|WP_164253555.1\|6563018_6565058_-\|protein-meaA	gnl\|CDD\|239653	cd03681, MM_CoA_mutase_MeaA, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.	0
NZ_CP048397.1\|WP_164253566.1\|6585973_6586939_+\|LD-carboxypeptidase	gnl\|CDD\|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	1.92824e-99
NZ_CP048397.1\|WP_164253560.1\|6573658_6574690_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	7.05211e-26
NZ_CP048397.1\|WP_164255143.1\|6582563_6583952_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|181163	PRK07906, PRK07906, hypothetical protein; Provisional.	0
NZ_CP048397.1\|WP_164253562.1\|6578157_6580626_+\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	5.74478e-54
NZ_CP048397.1\|WP_164253554.1\|6562029_6563022_-\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	3.97105e-75
NZ_CP048397.1\|WP_164253559.1\|6570401_6572192_-\|3-hydroxyacyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	3.36787e-106
NZ_CP048397.1\|WP_164253556.1\|6565059_6566397_-\|crotonyl-CoA-carboxylase/reductase	gnl\|CDD\|188164	TIGR01751, crotonyl_CoA_reductase, crotonyl-CoA carboxylase/reductase. The enzyme represented by this model can convert crotonyl-CoA to butyryl-CoA (crotonyl-CoA reductase activity), but more importantly, in the presence of CO2, generates (2S)-ethylmalonyl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce extender units for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.	0
NZ_CP048397.1\|WP_164253553.1\|6560304_6561510_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.17171e-137
NZ_CP048397.1\|WP_164253557.1\|6566760_6569322_-\|hypothetical-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000556726
NZ_CP048397.1\|WP_164253561.1\|6575548_6577987_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.22243e-71
NZ_CP048397.1\|WP_164253552.1\|6559478_6560135_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	6.98638e-92
NZ_CP048397.1\|WP_164253565.1\|6583964_6585977_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	8.24544e-57

>NZ_CP048397.1|WP_164255139.1|6572644_6573256_+|adenylosuccinate-lyase
MGPRAPVTARAERAVSDEESRVLADRVRDESGNSATYRRLMATEDHEELADVLVAPQHPLWAREIAAFRLGCAGDRRAFETLVLLLNHRDAQRCLSASRALAVLGDPRTPRAAAALATNVLRTAYALHPVRLLAELRAPESVPALIATLERLLAPDEPHWRVALACVEGLGRLGDRRALPLLRSARAHPRLSAAASEALRRLG
>NZ_CP048397.1|WP_164253559.1|6570401_6572192_-|3-hydroxyacyl-CoA-dehydrogenase-family-protein
MDIPLSTIAVVGLGTMGTGISEVLARAGREVIGIDIDEIATAHAVAALEASTARAVERGRVTEEERRGMLARFRTFTDLQAAADADLVIEVVPESYEIKQQVFRALDGIVGPGTILATGTNALSVTRLAAESAHPERVLGMHFFNPAPAMKLVEVVSSVLTAPAAVTAVTALARELGKEPVAVGDRPGFVADGLLFGYLNQAAAMYEAKYASREDIDAAMRLGCGLPMGPLALLDLIGVDTARTVLEAMYAASRDRLHAPAPILRQLSEAGLTGRKSGRGFYTYEEPGSGTVVRDALTPLDVGGGGGSGRPAVRSVGVAGSGTMASGIAEVFAKAGYVVVLAARSQEKADAAKARIAKSLGRSVDKGRLTGEARDDALARITPAGSLDAFDDVDLAVEAVAEDLEVKRQLFAALDKVCKPGAVLATTTSSLPVVACARATTRPRDVIGMHFFNPAPAMKLVEVVRTVLTSDEAHATVREVCATIRKHPVDCGDRAGFIVNALLFPYLNNAVKMVQEHYATLDDIDAAMKLGGGYPMGPFELLDVVGLDVSLAIEKVLHREFRDPGLAPAPLLEHLVAAGCLGRKTGRGFREYAARK
>NZ_CP048397.1|WP_164253558.1|6569395_6570235_-|TetR-family-transcriptional-regulator
MQYVRVMAQPADSARRPARTHTAADAPESAAGGRAAAQRLKMRRELSAAAMELFSTKGYEATTVDEIAAAAGVARRTFFRHFRSKEEAIFPDHDDTLVRAEAVLNAAPAHEHPLDTVCRGIKEVMRMYAASPTLSVARYQLTREVPTLREAEIASVARYERLFTRYLLGHFDEHEHPDGNDDPLLAEVAASAVVTAHNHVLRRWLRADGQGDVETQLDHAFAIVRDTFGSGIGAGRTMGGGASPAATVSTSGEVLVAVARTDAPLDEVMRTIKQALGNR
>NZ_CP048397.1|WP_164253557.1|6566760_6569322_-|hypothetical-protein
MSGEPVFSNEFSGGTAETVLQVGHADLVNVYGANAAAPPRRALAGLPARPGPLVGREAPTRSLLGLLGPDRPDPSSTGPRGVVVTGQGGVGKTSLALDAAHQALERGWFPGGVLYADAGTLPPGRPPGPEELLSAFLRMLGVPGGELPPHRIGLEAMFRSQLKTHGDQYGAVLVLLDNAADETQFTPLLPADPRHRLLVTSRTRPGTRDMAVLPLHVLTARDSRALLSAAHDPGENEELDELAALCGHLPLALGVVRARLDREEHDAAPLLSALRPQRDRLGELGLDATFDLSYRKFDEPTARLLRMLGLHPGPLLDAASASALSGLSPARTRRALDRLRDAHLLLPGDASGQYRFHDLTRLYAQARLADESDGARSEALGRLLDHYADEAGAADPGPWFEHHAAAAAKAVGMAVAADAHERVAAIGDPLLEFLTKRAQLVESLHLLTDLVDSAQRERKFARQIELLGKMASRYGDLSCWEHQMTCFEAANLVNVRHPVRVRDRHDVNADVAAMNGDLTAAIRRRRKAVSHWRWDGDTGREVDSRIALGDHLTEAHDPDRARRAYRDAADLAESATDPVRAARAHRRLAKDAGDRGEWAAARSHGVTAQEFAVRSGDVRATVTAVRARADTELLASAPRAAAPLLGDALELARAHQLRGEETNCQLALVRLHLASGERALASELLDFIRPLIEAREARDAPPGVPPPPPLPSQPLTRRDRARTLAGPAAGVLWATGCLVAGAAVDGSGPAALWGAHLGLTVVGAWAARRYWHHGIAPGKLNSLAVASQLVVPMLAMGVLWAIALATSQPEATAVMTVTAACLLLIQMALIWSGPRPLMKRPYKWVRSRLHTAR
>NZ_CP048397.1|WP_164253556.1|6565059_6566397_-|crotonyl-CoA-carboxylase/reductase
MKDILDAIQSPDSTSADFAALPLPETYRAVTVHKDETEMFAGLESREKDPRKSLHVDDVPVPELGPGEALVAVMASSVNYNSVWTSIFEPMSTFGFLERYGKLSELSRRHDLPYHVIGSDLAGVVLRTGPGVNTWQPGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKARHLTWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPVCVVSSDHKAEICRRMGAEAIIDRTAEDYRFWEDPHHQNPREWKRFGKRIRELTGGEDVDIVFEHPGRETFGASVYVTRKGGTIVTCASTSGYTHEYDNRYLWMSLKRIVGSHFANYREAWEANRLVGKGKIHPTLSRVYALEETGQAAYDVHSNRHQGKVGVLALAPREGLGVSDPATRAQHIDAINRFRDV
>NZ_CP048397.1|WP_164253555.1|6563018_6565058_-|protein-meaA
MPEAERAAGGGRHPKDRPWLMRTYAGHSTAEASNELYRNNLAKGQTGLSVAFDLPTQTGYDPDHVLARGEVGRVGVPVSHLGDMRRLLKDIPLARMNTSMTINATAMWLLALYQVVAEEQGADSDLLQGTTQNDIVKEYLSRGTHVFPPVPSLRLTTDMITYTVAHIPRWNPINICSYHLQEAGATPVQEIAYAMSTAVAVLDAVRESGQVPAERFGDVVARISFFVNAGVRFVEEMCKMRAFGRIWDRITRERYGVSDEKQRRFRYGVQVNSLGLTEAQPENNIQRIVLEMLGVTLSKDARARAVQLPAWNEALGLPRPWDQQWSLRIQQVLALESDLLEYEDIFAGSHVVEAKVALLVEDSLAEMARIEEMGGVMAAVESGYLKSRLVSSHAERRARIESGEEKIVGVNCFEATEPNPLTADLDTAIMTVDPANEARVVAALHEWRAGRDDARVNESLAALKRTAAGTGNLMAATVECARAGVTTGEWSWALREVFGEFRAPTGVGGAPVAVAAEAGTPLAAVREKVSRTAAELGSGRLRLLVGKPGLDGHSNGAEQIAVRARDAGFEVVYQGIRLTPEQIVSAAVAEDVHCVGLSILSGSHAALVPDVLGRLREEGAGDIPVVVGGIIPGADAQALRAAGVAAVFTPKDFGITEIIGRIVDEIRHANKLEPLEVSA
>NZ_CP048397.1|WP_164253554.1|6562029_6563022_-|CoA-ester-lyase
MTTSPKSAASDTPADRLRPRRSCLAVPGSNPRFLEKAQGLAADQVFLDLEDACAPLAKEGARHTVVDALNKGDWTGKTRVVRVNDWTTHWTYRDVITVVEGAGHNLDCLMLPKVQDAQQVVTLDLLLTQIEKTMGFEVGRIGIEAQIENARGLVNVDEIAASSPRLETIVFGPADFMASINMKTLVVGQQPPGYGADAYHYILMRILMAARTHDLQAIDGPFLQIRDVDAFREVAGRAAALGFDGKWVLHPGQIDAANEIFSPSQEDYDHAELILDAYDYATSEAGGKKGSAMLGDEMIDEASRKMALVVSGKGRAAGLRRTSKFEAPEA
>NZ_CP048397.1|WP_147876457.1|6561513_6562026_-|MaoC-family-dehydratase
MRFGRTFEEFEVGAVYKHWPGKTVTEYDDHLFCLLTMNHHPLHLDSNYAEKTTDFGRNVVVGNYIYSLLLGMSVPDVSGKAIANLEVESLRHIAPTFHGDTLYGETTVLDKTPSRSKDDRGVVYVETRGYKQDGTVVCVFRRKVMVPTATYIDKRGGEQPGRPEPTTQES
>NZ_CP048397.1|WP_164253553.1|6560304_6561510_-|acyl-CoA-dehydrogenase
MSRLAQTADLTDIQREILSTVRDFVDKEILPVATELEHRDEYPTRIVEGLKELGLFGLMIPEEYGGLGESLLTYALCVEEIARGWMSVSGIVNTHFIVAYMIKQHGTEEQKDTFLPRMAAGEVRGAFSMSEPGLGSDVSAITSKGVRDGDEYVLDGQKMWLTNGGTSTLVAVLCRSDEGHPEGTAPHRSMTTFLVEKESGFGEVRPGLTIPGKIDKMGYKGVDTTELIMDGLRIPANRVLGGTTGRGFYQMMDGVEVGRVNVAARGCGVAQRAFELGVSYAQQRHTFGKPIAQHQAIQFKLAEMATKVEAAHAMMVNAARKKDSGERNDLEAGMAKYLASEYCKEVVEDAFRIHGGYGFSKEYEIERLYREAPMLLIGEGTAEIQKMIIGRRLLEEYRFQG
>NZ_CP048397.1|WP_164253552.1|6559478_6560135_-|phosphatidylserine-decarboxylase
MPHSQTSAPRDLIPKGRLARGASPWLLPTVATAALSLVRARRSRRAAAVAVPATALAAGMLWFFRDPEREITQGRVISPADGVVQSIMPWKDGRTRVAIFMSPLNVHVNRAPLAGTVTSVEHIPGGFVPAFNKESENNERVVWHFDTELGDIEMVQIAGAVARRIVPYVPQGTKLEQGERIGLIRFGSRVDIYLPEGVEVAVEVGQTTTAGVTRIDRD
>NZ_CP048397.1|WP_164253560.1|6573658_6574690_-|radical-SAM-protein
MRWDNLAENPTSARDAALFGTDAVTTRTFDTPEFRGITFHEIRARSIVNRVPGASRMPFEWTVNPYRGCSHACVYCFARKTHSYLDLDTGLGFDSQIVVKINAPALLRRQLASRQWQGAHIAMGTNVDCYQRAEGRYRLMPGIISALRDRANPFSILTKGTLILRDLELLREAAQVTDVGVSVSVGFTDQELWRTVEPGTPSPQRRLDAVRALTDSGIGCGVLMAPVIPFLGDSADQLRATVRAIAASGATSVTPLVLHLRPGAREWFMRWLREHHAHLVPRYERLYAEGAYAPKWYQRRITRQVHELADEFGIGPAGRAARRRVPVPETPAPEAGPTQLTLL
>NZ_CP048397.1|WP_164255141.1|6574820_6575279_+|SRPBCC-family-protein
MAQVEATTERIIAADAETVFDALADYQDVRPKVLPAHFSEYEVREGGDGEGTLVRWKLQATKKRVRDCLIEVTEPTDGQLVEKDRNSSMVTTWVVTPAGEGRSKTVVTTVWDGAGGIGGFFERTFAPKGLARIHDELLAKLAAETEKATEAS
>NZ_CP048397.1|WP_164253561.1|6575548_6577987_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MGGITLVKDDEQAAVPAPAATEPPPPATGAATPGGELSPRRVRLVFTGLMLALLLAALEQMIVATALPKIVGELQGLDRMPWAITAYLLTSTIGLPIYGKLGDLFGRKGVFQFAIVVFVVGSALAGWSRTMNELIAFRALQGVGAGGLMIGVQAIIADIVPPRERGRYMGLIGGAFGLASVAGPLLGGFFTDHVSWRWCFYFNVPFGLLTLAVVTVVLRLPKPSGRARLDVMGAVLLAAASTCLVLLTSWGGTEYAWGSREILGLAAGAVVTAVLFVVVEHFAPEPIIPLRLFRDSIFNITGLVGAVVGVALFGAASYLPTFLQMVDGASATESGLLMLPMMGGIVAASVVSGQLISRTGHYRIYPILGSAVSAVGMWLLSRLETDTSRLEYSVWQAVLGLGIGLVMPVLILAVQNSVRPSDLGTATSANNYFRQIGGSVGAAVFGTLFADRLTDALVERIPSGAGLPSAESITPQMVHAMPPELRDGYIQAYADAMPRIFLYLVPVLLLGLLIACFLKEKPLVSHNASAAESTAVPGARTPGPAAAPASANGVAPHAYTPGVPVCGTVQHHDGSTVPRAALTLIDVQGTQIGRGASGEDGRYALSVPGAGSYVMIAAAGGHQPQAVTVTVGERPIELDVVLGGAGRLAGTVLTADGTPVRDAAVTLTDVRGDVVASTRSGREGGYVISELVAGEYTLAASAPAFRPAALLVSVQASRETRQDIELAGGAVLRGTVRAGGGRPVEDARVTLLDAAGNVVDTLTTGADGTFRFVDLSSGEYTVIAAGYPPVATVLRMAGGGRTERDLQLGHAD
>NZ_CP048397.1|WP_164253562.1|6578157_6580626_+|SpoIIE-family-protein-phosphatase
MHSGTPSLRSRRGRAATGRIPLAVVVVDADGLVSHWSSGARRLFGHSKEAAVGQPAGDLMPVSGALTEDRTGRVNGPYDLYGADDELGPELHGRSSYPTAGRAKLSDPGRPRLDVLWWAYPLAGPGAGRHLVLAADVDQFRVGDADSGRIAPSFSHHTEFADSQSLAGRLPHILPNMSVAESERIVAQILELGYPVLEFSHHDRVPVTPDWGVPRRVAGRPAGAHGTAEPGAAGAGTSYGHPAALPVPAPDPELDLEYAAVRERLEFLNEVSGLIGSSLDLARTIREVTSVAVPRFTDFAGTHLRAAVLAGEGFPTGRPDVTTIWHRVWVEHNDEPGRWDDTVPVGEAIAFPEHTPFFQCMVTGEPVLIPRLSEEDGDRISAQFEKRDLRPLINNRSMLLVPLKARDVVLGFMVLMRRQGRRPFDDMDRTTGAELAARAGLVLDNARMYTYQENVADTLQDSMLPQVATRMAGCDIATRYLPGARLGRIGGDWFDSVKLPGSRTALVVGDVMGHGLNSAAMMGQLRTAVQTMATMEMPPAQLLRNLDDLAQRLGENYLATCLYAVYDPIRSELQIANAGHIPPVLVRATDGRSELLDLPTGAPIGVGGVPFETATVRVGPGDRLVLCTDGLVEVRGQDIGAGLAALCESAAHPAASMDGACDTIIRALNTQGGRKDDVALLMARLNGIPDGDVAEWQLALDPREVARARRLVRGKLCDWDLPGAVENAELMVGELVTNAVRHARIRHVELRLVRTDALLCEVTDDEPAPASLLGATADDEFGRGLRIVSRLARGWGSSSSAQGKTVWFEQSLAGEGASQARK
>NZ_CP048397.1|WP_164253563.1|6580676_6581396_+|methyltransferase-domain-containing-protein
MGVAERYRDSWEGYWRETSDAPGEAIWDSDPSLTAEPHCAILLPHTDPSLPVADLGCGNGTQTRYLATRFPRAVGVDLSHAAIEHARRADTEKVAEFEQLSLVDHEAVRALSARLGDTHVYMRAVIHQSEPRDRPAVAASVAALLGERGRAFVVELTSGSRALFQRAAADPGGPPAKLRRVFDHGLRPAGAADDEVPRLLGEAGLRIIDSGDTTLPQTEYLADGTRIDLPARWFVLSAA
>NZ_CP048397.1|WP_164253564.1|6581728_6582562_+|M55-family-metallopeptidase
MKILISADMEGATGVTWPADVLPGTPQWERCRTLFTSDVNAAVLGFLDGGADDVLINEAHWSMRNLLLEELDDRAQLLTGRHKTLSMVEGVQHGDVDAIAFIGYHTGAGTEGVLAHTYLANSVTGVWLNGARASEGLLNAHVVAEYGVPVVLVTGDDLTCRDADGYAPGARKVAVKDYVSRYAAVCRTPARTAADIRAAAQEATALAVRYEPVDGGPFTIELEFDAEHLAGAATVVPGVVGSGERRVAYTTGTMYDGIRTFKAVTTIVSAAVEEQYG
>NZ_CP048397.1|WP_164255143.1|6582563_6583952_+|M20/M25/M40-family-metallo-hydrolase
MTPDKTPAGSPGTTPEDTGPDRADAIDMVALDEAVSFTSELIRIDTTNRGNGDCYERPAAEYVAERLAAAGLEPTLLERTPGRTNVVARIPGTDPGADALLVHGHLDVVPAEPADWSVHPFSGEVRDGVVWGRGAVDMKNMDAMVLSVVRAWARSGVRPRRDIVLAYTADEEASAIDGSGFLADHHPELFEGCTEGISESGAYTFHAGPGMALYPVGAGERGTGWLKLTARGRAGHGSKVNRANAVSRLAAAVARIGQHEWPLRITPTVRAALKEIAALHGIDADVHCDHFDADALLAKLGPAAALVEATVRNSANPTVLEAGYKVNVIPGQAVAFIDGRMLPGTEDEFRATLDQLTGPDVDWEFHHREVALQAPVDSPTFARLRAAVERFDPAGHVVPYCMSGGTDAKQFSRLGITGYGFSPLKLPVGFDYQALFHGVDERVPVDALHFGVRVLDHYLQTA
>NZ_CP048397.1|WP_164253565.1|6583964_6585977_+|prolyl-oligopeptidase-family-serine-peptidase
MEQPTPYGSWPSPIDAALAASHDGRPEFVGAVGEEVWWTEPRPAENGRRALVRVRSDGREESVLPPPWNVRSRVIEYGGRPWDGTVRADGSPLVVFAHFPDQRLYAYEPDGGGSPRPLTPAPPPDGRVSGTLRWADPQIRPDSGEVWCVLEEFTGEAPTDVRRVVAAVPLDGSAADDRSAVRELSDDRHRFVTGPRVSPDGRHAAWIAWDHPRMPWDGTELLLADVTEAGVFERVRTVAGGPRESVAQTDWAVDGSLLYVSDPGDWWQLRRLRLDASPLGVGAPARLSPAVEEEFGGPLWKIGLQWFRPMEDGMIAVVHGKGATALGILDPETGQLADAAGPWTEWAATLAVRGTRVIGVGASPRSAYEIVELDTTTGRARVIGSAHEDPVDPVYYPEPQIRTFTGPDDREIHAHIYPPHSPDHSSPGDELPPYVVWAHGGPTSHAPLVLDLEIAYFTSRGIGVAEVNYGGSTGYGREYRERLREQWGVVDVEDCAAVARALAGEGTADPARLAVRGGSAGGWTSAASLTGTDVYACGTVIYPILDLSTWAEDGTHDFESRYLESLVGPVAEVPARSRERSPINHVDRITAPFLLLQGLDDVICPPVQCERFLERLAGRGIPHAYITFEGEGHGFRRTDTMVRALEAELSLYAQTFGIDRPDIPVLELRK
>NZ_CP048397.1|WP_164253566.1|6585973_6586939_+|LD-carboxypeptidase
MTPEPGPAAAPLAPLVRAPRLRPGAKVAVVAPSGPLPAERLEAGLDILRGWGLDPVVAPHVLDTHREFDYLAGTDEARARDLQDAWCDPTIEAVLCARGGYGVQRMVDLLDWDTMRAAAPKAFVGYSDITALHEAFAVRAGVSTLHGPMVAALTILKDPATQESLRATLLEPETVRVIGPGTARGLVPGRARGITLGGCVSLLAADLGTPHARRRAAGGLLLIEDIEEEPYRLDRILTQLLRSGWLDGVAGVALGSWAGCGPYDDVRTLMLDRLGGLGVPVVEELGFGHGPTNLTVPLGVPAVLEATTDGGSLTLEVPALT
>NZ_CP048397.1|WP_164253567.1|6587318_6587666_-|hypothetical-protein
MTTQHTYRVIVRGTFHNLADGARARLLDEVEEHGLGQMRFTPEGSLTYDRGLRHFSFRFVVVSDADDGEEMAAALAEDRAETALRALGGGAGVGFGELRSSVTDMDTMKINRKGR

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Crispr_ID: NZ_CP048397_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_13

6802418-6802520

Orphan

Consensus_repeat	Method
GCACCGGCGTCGGCGCGGCCGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_13

>merge|NZ_CP048397|13|6802418-6802520|CRISPRCasFinder
GTCCCGGCATCAGCACCGGCGTCGGCGCGGCCGTCGGTACCGGTCCCGGTCCCGGCATTGGTCCCGGCATTGGTCCCGGCACCGGCGGCGGCGCGGCCGTCGG

>NZ_CP048397|13|12|6802418-6802520|CRISPRCasFinder
GTCCCGGCATCAGCACCGGCGTCGG	CGCGGCCGTCGGTACCGGTCCCGGTCCCGGCATTGGTCCCGGCATTGGTCCCG
GCACCGGCGGCGGCGCGGCCGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_164253681.1\|6797316_6798243_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP048397.1\|WP_164253679.1\|6793526_6794987_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99735
NZ_CP048397.1\|WP_164253691.1\|6808966_6810148_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|133445
NZ_CP048397.1\|WP_164253684.1\|6800112_6801501_-\|coproporphyrinogen-III-oxidase-family-protein	unknown	unknown	gnl\|CDD\|181292
NZ_CP048397.1\|WP_164253692.1\|6811834_6812626_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP048397.1\|WP_164253687.1\|6804633_6805581_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP048397.1\|WP_164253682.1\|6798410_6799238_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238870
NZ_CP048397.1\|WP_164253680.1\|6795048_6795675_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339
NZ_CP048397.1\|WP_147876301.1\|6792400_6793420_+\|adenosyl-hopene-transferase-HpnH	unknown	unknown	gnl\|CDD\|274595
NZ_CP048397.1\|WP_164253693.1\|6812772_6813666_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP048397.1\|WP_078079340.1\|6795789_6795912_+\|small-hydrophobic-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253688.1\|6805749_6806079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253694.1\|6813990_6815946_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340391
NZ_CP048397.1\|WP_164253683.1\|6799259_6800105_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|100105
NZ_CP048397.1\|WP_164255182.1\|6807196_6808090_-\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238573
NZ_CP048397.1\|WP_164255180.1\|6795937_6796741_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NZ_CP048397.1\|WP_164253690.1\|6808270_6808894_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379409
NZ_CP048397.1\|WP_164253686.1\|6803653_6804637_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253689.1\|6806208_6807210_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP048397.1\|WP_164253685.1\|6801500_6802367_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293767

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_164253681.1\|6797316_6798243_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.95426e-42
NZ_CP048397.1\|WP_164253679.1\|6793526_6794987_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99735	cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.	3.35599e-134
NZ_CP048397.1\|WP_164253691.1\|6808966_6810148_-\|glutamate-dehydrogenase	gnl\|CDD\|133445	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts.	4.94462e-73
NZ_CP048397.1\|WP_164253684.1\|6800112_6801501_-\|coproporphyrinogen-III-oxidase-family-protein	gnl\|CDD\|181292	PRK08208, PRK08208, coproporphyrinogen III oxidase family protein.	0
NZ_CP048397.1\|WP_164253692.1\|6811834_6812626_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.46753e-72
NZ_CP048397.1\|WP_164253687.1\|6804633_6805581_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.55125e-06
NZ_CP048397.1\|WP_164253682.1\|6798410_6799238_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238870	cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.	2.97324e-62
NZ_CP048397.1\|WP_164253680.1\|6795048_6795675_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	8.65943e-25
NZ_CP048397.1\|WP_147876301.1\|6792400_6793420_+\|adenosyl-hopene-transferase-HpnH	gnl\|CDD\|274595	TIGR03470, HpnH, hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH and running in the same convergent direction is IspH (ZM0875, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase), an essential enzyme of IPP biosynthesis and therefore essential for the biosynthesis of hopanoids. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.	0
NZ_CP048397.1\|WP_164253693.1\|6812772_6813666_+\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	5.063e-32
NZ_CP048397.1\|WP_164253694.1\|6813990_6815946_+\|ATP-binding-protein	gnl\|CDD\|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	2.59586e-15
NZ_CP048397.1\|WP_164253683.1\|6799259_6800105_-\|radical-SAM-protein	gnl\|CDD\|100105	cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.	3.12582e-05
NZ_CP048397.1\|WP_164255182.1\|6807196_6808090_-\|carbohydrate-kinase-family-protein	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	7.80828e-38
NZ_CP048397.1\|WP_164255180.1\|6795937_6796741_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	5.75641e-80
NZ_CP048397.1\|WP_164253690.1\|6808270_6808894_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	4.409e-14
NZ_CP048397.1\|WP_164253685.1\|6801500_6802367_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293767	cd16148, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	1.57779e-10

>NZ_CP048397.1|WP_164253685.1|6801500_6802367_-|sulfatase-like-hydrolase/transferase
MPESETGIDAGLAAAELPDMSRVVGHDDLLLVTLDTLRFDVAAELAEAGRLPNLARHLPGGRWEERHAPGSFTYASHQAMFAGFLPTPAAPGPHPRLFAARFEGSESTADRTFVFDTPDLVSGLAGAGYRTVCIGGVGFFNKRGALGSVLPGMFQESHWAPEFGVASPTSFESQVARAEEVVADLPAAQRLFLFVNVPSLHQPNWFHLPGATRAAGDSRETHAAALEYVDRHIGRLFAAASSRRRCFTIVCSDHGTAYGDDGWSGHRLGHESVWTVPYAHFFLEPGAP
>NZ_CP048397.1|WP_164253684.1|6800112_6801501_-|coproporphyrinogen-III-oxidase-family-protein
MTDPTSTTILAPRPYESYVYAYPHKTAYRPLADRPALSALWAGERKDALSLYLHIPFCEVRCGFCNLFTRIGAPGELTTRYLDALDRQATAVADALHADPAPGTDRDTNGDAGAVRFAAAAFGGGTPTFLTAGELERLCDIAEKRMGADLRAGPLSVETSPSTATADRLSVLADRGATRLSIGVQSFVEEEARAAVRPQRRSDVEAALGRIRDARIPVLNIDLIYGIDGQTPRSWRLSLDAALAWRPEELYLYPLYARPLTPLGRRAHPSEAGWDAQRLELYRQGRDHLLAQGYEQVSMRMFRLPGAPREGADDYACQTDGMIGLGCGARSYTSELHYSFDYAVGMREIRTIIDAYTATEDFSRAEVGRAVDADEARRRHLLQSLLQAEGMAVADYRERFGSGPDEDFPAELNRFAGLGWLDAEAGPGLLRLSPEGLAHSDALGPALFSPAVRAAMASYELK
>NZ_CP048397.1|WP_164253683.1|6799259_6800105_-|radical-SAM-protein
MDLTILYRGPLASCDYDCPYCPFAKRRDGPDQLRADRAALERFTAWAAERTDDRLSVLFTPWGEGLTRSWYRRALTDLSHLPHVARVAIQTNLSCRTDWLKSADPAKVALWCTYHPGQTPYDRFLTKCRELGAAGIRFSVGIVGFPDHLDRARRLRADLPEHVYLWVNAAEGRTYSDPEAAEWTSVDPLFPYSRHPHRSAGLPCRTGESVISVDGEGTVRRCHFVPAELGNLYDGSYRTALKPRACPLAACDCHIGYVHLETLPLYDVFAGGVLERIPAAR
>NZ_CP048397.1|WP_164253682.1|6798410_6799238_+|SGNH/GDSL-hydrolase-family-protein
MADDSRRETRSPFGSYAAIGDSFTEGVGDPGPGGVFVGWADRLAVLLADRTPDGAAVDDPDHGSFRYANLAVRGRLLDQIVAEQIPRAKQLAPDLVTFCAGGNDIIRPGSDPDDVAERFERALADLTSVVGTVMVPTGFDTRGVPVLRHLRGKIATFTAHVRSIADRYECPVLDLWSLRSVQDRRAWEGDRLHLSPEGHTRVALRAAQVLGLDVPADPDQPWPPLPPRGTLEVRRDDMQWAREYLVPWIGRRLRGESSGDHTVAKRPDLLPLMRH
>NZ_CP048397.1|WP_164253681.1|6797316_6798243_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MPGKGKHRRPRTNPITRGFVAAGTGGAAIAIPLIGATGAHAAEQAAPSVAPERTVSAAHAAPTAQTAKQAATAKTVKTYSVKAGDYLAKVAATQKVSGGWHKLYKDNREAVGDDPSLIHPGLKLTIGAKSKASSEGKAEATPKKPAPAKPAPAEPAPKADTTSANEPAAQSSGSGYTAPVDGATTTTAYRAAGGSWASGYHTGVDFAAASGTTVKAVGPGTVVSAGWSGSYGNEVVIQHDDGQYSQYAHLSSLAVSAGQTVAGGDQIGLSGSTGNSTGPHLHFEIRTGPSYGSDVDPLAYLREHGVSI
>NZ_CP048397.1|WP_164255180.1|6795937_6796741_-|tyrosine-protein-phosphatase
MPQPVPPTEPELAGVRNFRDVGGLPTSDGRRVRYGRLFRSGHLAHATAEDAAFLTSLDLHTVFDFRNAADQKLDGLDVELIGVRNVNIPLTDPADGTEFWKMVRDGDLDQLRSILADGKGVARMSASYRSIILDRTAEHRRVLHALAEESLPALMHCAAGKDRAGLSIAVSLLAVGVEREAIEADYLKSNEPHRRYRVRRSDTTPGGTSPEVMELLAPLFDARAEYLETAFTTMEETWGSIDRYLTDGLGLTDATRERLRGRLVDEG
>NZ_CP048397.1|WP_078079340.1|6795789_6795912_+|small-hydrophobic-protein
MDEERNFPRGLAIRLFAYLVAGHVLAGFLYLLFEAGAQGR
>NZ_CP048397.1|WP_164253680.1|6795048_6795675_+|helix-turn-helix-domain-containing-protein
MDTPAATSGHDPETEALPDVAPQLRELRRGRGLTLEAAAARAGLSPAHLSRLETGRRQPSLPMLLGLARVYGTTVSELLGEEPPERDPVIRAARAEPVEADGWIYRQAGSSSGRAMQPLRVTVPYGAQGDLVRVHPGEEWIHLLQGRLRLGLGDAVHVLDPGDSAHFDSMTPHRLAAVGPDGAELLFVHTLLISPTTELCLPGGAHRR
>NZ_CP048397.1|WP_164253679.1|6793526_6794987_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTESSESGTGRGGVPRAAGQREPGTPGKGFDLTKLLAERGGERYELHTAHLNHQLPRMLRTIGFDKVYERAEGAYFWDAEGNDYLDMLAGFGVMGIGRHHPVVREALHDVLDASLADLTRFDCQPLPGLLAEKLLAYSPHLDRVFFGNSGTEAVETALKFARYATGKPRILYCSHAFHGLTTGSLSVNGEAGFRDGFAPLLPDTALALGDLDSLERELKRGDVAGFVVEPIQGKGVRATPSGFLRAAQELLHRHKALLIADEVQTGLGRTGDFYAYQHEEGVEPDLVCVAKALSGGYVPVGATLGKNWIFRRVYSSMDRVLVHSASFGSNAQAMAAGLAVLSVIEDERIVANARTTGDLLRSRLAALVDRYEFLSEVRGRGLMIGIEFGRPASIGLRGRWTMLQAARKGLFAQMVVVPLLQKHRILTQVSGDELEVIKLIPPLTIGEREVDRFVTAFTAVMDDAHKGGGLMWDFGRTLVKQAIANR
>NZ_CP048397.1|WP_147876301.1|6792400_6793420_+|adenosyl-hopene-transferase-HpnH
MAMPLRQTIRVGTYLVEQKLRRREKFPLIVELEPLFACNLACEGCGKIQHPAGVLKQRMPVAQAVGAVLESGAPMVSIAGGEPLMHPQIDEIVRQLVAKKKYVFLCTNALLMRKKMDKFTPSPYFAFAVHIDGLRDRHDESVAKEGVFDEAVEAMKEAKKRGFRVTTNSTFFNTDTPQTIIEVLNYLNDDLKVDEMMISPAYAYEKAPDQEHFLGVDQTRELFKKAFAGGNRARWRLNHSPLFLDFLEGKADFPCTAWAIPNYSLFGWQRPCYLMSDGYVPTYRELIEETDWDKYGRGKDPRCANCMAHCGYEPTAVLATMGSLKESLRAVRETVSGSK
>NZ_CP048397.1|WP_164253686.1|6803653_6804637_-|leucine-rich-repeat-domain-containing-protein
MTGPDGIDHIDEFHGLPVLTLAHDETPAPGTLPEPDAVAWRLDCAWDDEWPFARLWRRFTDVVDTERVRALVIGPWWIGEYSELRPVLELIVADAARFPALRALFLADVVGEECEVSWLRINDITPAIEAFPLLEEFGVRGCGDTYRDGDMRLRPVKHDRLRVLRFESGGLPGAVVRAVGASELPALEHLELWLGVDEYGGNATVADLAPLLDGGRFPLLRHLGLQNSEIQDEIAGAVAAAPVVAGLHSLALSMGTLTDEGAEALLAGQPLTHLKKLDLKHHFVSKPWIGRIEDALGPHGVRLELGSAMDYSHGTDDDEWRYVAVSE
>NZ_CP048397.1|WP_164253687.1|6804633_6805581_-|leucine-rich-repeat-domain-containing-protein
MTVSNHLQELDGLPAFDFPDAEAEPKAELPDAGSVAWRVGVDAYDSEEEWEEAFARFLAAVDPTRVRALIVGAWSEAYETAPDELTAALIAASDRLPSLRALFVGDITYEECEISWINQAAMGPLINAFPQLHSFGVRGGQGLDMAGIKHDGLRSLTVETGGLDAGVVRDIGAAELPSLERLDIWLGVSWYGANTIVADLDPFLTGARLPALKSLALRNSEIQDEIAAALAGAPVVARLETLDLSMGTLGDEGAEALLGGQPLTHLKKLDLHHHYLSEPMEKRLRETLEPAGVVVDLSERESARDDESRYTAVAE
>NZ_CP048397.1|WP_164253688.1|6805749_6806079_+|hypothetical-protein
MYRQGDVLIVPVAEESVPSGITEARSEPRDARGRLVLALGEVTGHAHAVTGPGMLVRETGGEFGPMLLHLPEGGRVVHEEHAMISLPKGWFRVVRQREYLPGAVRVVAD
>NZ_CP048397.1|WP_164253689.1|6806208_6807210_+|hypothetical-protein
MQQLEKWRGVAAATGAAVRPAAEAGIRLAYRTAGLAEPERIVWADSPLAGLTTVRSLTDQGRSVRDEVRTKPWAEERRRIHDELGPAGWAEWWGATGARLWDTTRALAERIRSGITDAPTTDPADLPGTRQLLLDAVLGQHDAAWLAAFDGRGERLAGLAEVAAHAGWWWPYEKVTVVCERPVELHRDEAGRLDRGDGPALAYPDGFALYAWRGMPVPADFLAELTTLDPTRIRTEENAELRRVMLEHYGYDRYLAESGAEPIGKDETGILWRIALDDDEDVVMVEVVNSTPEPDGTSRTYWLRVPPNTRTAKEGVAWTFGLDAQAYEPLRQT
>NZ_CP048397.1|WP_164255182.1|6807196_6808090_-|carbohydrate-kinase-family-protein
MVVGGSGVDTVVRVDSLPVPLADAIGVGPIREWPGQTGGNVALGCQALGLNVKFLDFIGDDWTGGQVREHLAKGGVDFEGLISPAGTRRAVNLVEKTGRRMSFYDGRDPEDLRMPREFYLPHLRRARRVHVSLTNFTRFLLDDIVEQGVPVSTDLHDWDGVDAYHREFAYRADLVFLSAAGARERIAPVMREILREGRAQAVVATAGAGGSYLLTREGSRTPRPIPATVPPAPVVDSNGAGDAYASGFLYGQLAGRDLDDCARLGAVAGAYACTVEGSSSLITSEALLSGVRPVRSA
>NZ_CP048397.1|WP_164253690.1|6808270_6808894_-|TetR-family-transcriptional-regulator
MARVRLSVEERREDLLRAAIEQIQTRGVAAVRIADVAAVLGVSNALVLYHFSTKEKLLAAAFRYAAEEDLAQLRELLGRRTSVLRRLHAATRWYTPTGEAKGWRLWIEGWAAAPREPALHEVASELDQQWKSALAAVITEGVDAGEFRCADPVATAWRLTALLDGLAVQMTSYAGSLTRTTLLEWSDEALARELGVDRAVLTAGGPS
>NZ_CP048397.1|WP_164253691.1|6808966_6810148_-|glutamate-dehydrogenase
MSPLISLTWSDDVTGRKGYLVVDRLVRGVSSGGLRMRAGCSLDEVTGLARGMTMKEALHYDADPSVRYIPLGGAKGGIDCDPRDPAAYGVLVRYLRAVRPYIETVWTTGEDLGLTQDLIDRAAAEAGLVSTVQAIHPLLDDERAARRRLADAFAVDVDGIGLDELAGGCGVAESALTALDRAGVPHDGTRVSVQGLGTMGGATARFLSRAGLKIVAVADVKGTIACPDGLDVESLLAARDPFGTVDRAVLRPGDRELPGDAWLSADAEILVPAAVSYAIDATNQALITARWIVEAANMPVLAQAEELLAARGITVLPDVVVNSGTNAWWWWTLFGDIGADADEAFTHTRRSTRALTELTLARAEAGGTTPRTAAHAIAADRLALIAERFGHYR
>NZ_CP048397.1|WP_164253692.1|6811834_6812626_-|DeoR-family-transcriptional-regulator
MNRYERHNNLLELLAERGRLDVDDVAAELSVSAATVRRDLDHLAEQQLLTRTRGGAVAHSVSYGLPPRYKSVGRSAEKQRIGHAAAALVYRGMVIGLNGGTTTAEVARAVATRGDLTDASNRGGEPAVTLVTNALNIAHELAVRPHIKIVTTGGVAMPQSYELVGPLARHILGEVSLDIAFIGADAVDAEAGASARSEHEASINALLAERARRLVVVADSTKLGTLAFARICPTEAIGTLITDTGAPEQAKQFEERGVTVVQV
>NZ_CP048397.1|WP_164253693.1|6812772_6813666_+|SIS-domain-containing-protein
MTFVQKELASQPASWSRAAELAEGLRGSGQLPEAGERTAVVGCGTSYYMAQAYAALREGAGQGETDAFAASEFPAGRRYDRVVALTRSGTTTEVLQLLAAARGASARTTAITADPRTPIRSAADDLVVLGFADEQSVVQTRFATTALTLLRAHLGLHTESVVADAERAVAEPLPEGITDCSQFTFLGQGWTVGLANEGALKMREAALAWTESYPAMEYRHGPISITTEGTATWLLGPAPDGLAEQVGATGGRWVAGELDPLAELVRIQRLALALADARGLDPDRPRHLTRSVILADG
>NZ_CP048397.1|WP_164253694.1|6813990_6815946_+|ATP-binding-protein
MSQLRAPAARPDRREGGRHGRPGTRTPSAKASPARGPALPEPPAPAPPEAGMRPQLLRAAVVPTVIATLGGLLAVLVTVRSGGMAPTPEIWAAVVGTVLTGVLAATAAAVGADRIARSVHDRSHALRRSSAGAQADLRAVVEQLRRGEGPPPRRPLPAKQPVGDELDLLAHELERSQEQAVAAVVQASRLSSGVGNEQKVEVFVNLARRLQSLVHREIQLLDELENKVEDPDLLKGLFQVDHLATRIRRHAENLAVLGGAISRRQWSRPVTLTEVLRSAVAEVEQYPRVKLVPPVNGTLRGHAVADVVHLLAELVENATLSSAPHTQVLLRAQQVTAGLAIEVEDRGLGMPADEQKRMNALLADPDPDQVNVAHLLQDGRIGLFVVSALARRHGIAVRLHANIYGGTQAVLVLPQALLGVDGDGSGQADGQVPGVPMAGSPPAPPPVNSNGHAPPPTPAPAPPPVPAQVYEARLGAASPASPAKEARQRPSHRRTSGRRPLPVRGERATPDETPTGPTARPRPPEPDQHPRREESFLPEGSVLPPPGPEFLPVTDGPSVPGAVRGTMDRPQLPRRRSQEHLVPQLRDAPAPPRDDEQALHDPGLMAAFQRGIGLAEAQPARDHVPGPGPAPAPATELPDPPRAVRDNPSKE

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Crispr_ID: NZ_CP048397_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048397_14

7043518-7043595

Orphan

Consensus_repeat	Method
CAGCCCGTCCGGCGTTTGAGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048397_14

>merge|NZ_CP048397|14|7043518-7043595|CRISPRCasFinder
CAGCCCGTCCGGCGTTTGAGGACGAAGGCCCGGGCCCCGGGCCGGGGGCATCAACCAGCCCGTCCGGCGATTGAGGAC

>NZ_CP048397|14|13|7043518-7043595|CRISPRCasFinder
CAGCCCGTCCGGCGTTTGAGGAC	GAAGGCCCGGGCCCCGGGCCGGGGGCATCAAC
CAGCCCGTCCGGCGATTGAGGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048397.1\|WP_147877882.1\|7041945_7043250_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP048397.1\|WP_164255217.1\|7036051_7036951_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP048397.1\|WP_164253790.1\|7050885_7052067_+\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_CP048397.1\|WP_164255221.1\|7055420_7057082_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP048397.1\|WP_164253783.1\|7039467_7040478_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP048397.1\|WP_164253792.1\|7053419_7054469_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP048397.1\|WP_164253785.1\|7043608_7044727_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP048397.1\|WP_164253779.1\|7033108_7034095_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP048397.1\|WP_164255219.1\|7038599_7039463_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP048397.1\|WP_164253780.1\|7034091_7035009_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP048397.1\|WP_164253782.1\|7037172_7038537_-\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP048397.1\|WP_164253781.1\|7035005_7035995_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176196
NZ_CP048397.1\|WP_164253778.1\|7031753_7033112_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP048397.1\|WP_164253788.1\|7048690_7049842_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283340
NZ_CP048397.1\|WP_164253786.1\|7044743_7047287_-\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|224389
NZ_CP048397.1\|WP_164253789.1\|7050065_7050830_+\|ferric-iron-reductase	unknown	unknown	gnl\|CDD\|226599
NZ_CP048397.1\|WP_147877873.1\|7054465_7055428_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP048397.1\|WP_164253787.1\|7047520_7048810_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP048397.1\|WP_164253791.1\|7052121_7053339_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_CP048397.1\|WP_164253784.1\|7040488_7041805_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303

Protein	Function_ID	Function_description	E-value
NZ_CP048397.1\|WP_147877882.1\|7041945_7043250_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.28354e-45
NZ_CP048397.1\|WP_164255217.1\|7036051_7036951_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	7.95722e-63
NZ_CP048397.1\|WP_164253790.1\|7050885_7052067_+\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP048397.1\|WP_164255221.1\|7055420_7057082_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP048397.1\|WP_164253783.1\|7039467_7040478_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	9.55e-68
NZ_CP048397.1\|WP_164253792.1\|7053419_7054469_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.96998e-81
NZ_CP048397.1\|WP_164253785.1\|7043608_7044727_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.53873e-100
NZ_CP048397.1\|WP_164253779.1\|7033108_7034095_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.37668e-67
NZ_CP048397.1\|WP_164255219.1\|7038599_7039463_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.41649e-80
NZ_CP048397.1\|WP_164253780.1\|7034091_7035009_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.09011e-62
NZ_CP048397.1\|WP_164253782.1\|7037172_7038537_-\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP048397.1\|WP_164253781.1\|7035005_7035995_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	1.02226e-165
NZ_CP048397.1\|WP_164253778.1\|7031753_7033112_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.24746e-66
NZ_CP048397.1\|WP_164253788.1\|7048690_7049842_-\|hypothetical-protein	gnl\|CDD\|283340	pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters.	6.41986e-07
NZ_CP048397.1\|WP_164253786.1\|7044743_7047287_-\|glycosyl-hydrolase	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	8.11271e-61
NZ_CP048397.1\|WP_164253789.1\|7050065_7050830_+\|ferric-iron-reductase	gnl\|CDD\|226599	COG4114, FhuF, Uncharacterized Fe-S protein [General function prediction only].	1.20941e-11
NZ_CP048397.1\|WP_147877873.1\|7054465_7055428_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.78093e-68
NZ_CP048397.1\|WP_164253787.1\|7047520_7048810_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.74421e-42
NZ_CP048397.1\|WP_164253791.1\|7052121_7053339_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP048397.1\|WP_164253784.1\|7040488_7041805_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.06528e-69

>NZ_CP048397.1|WP_147877882.1|7041945_7043250_+|ROK-family-protein
MAERDRRTVRDLRRGNRARVLQRLYFDGPLSRQELGPATGLSSGSISNVVTELAAERLLEEAGVVDSDGGRPRTLLRVAPGGALLIGIDIGETRVRVELFDLSLTELARTERLLAQHGHDVERIVAHVRTGVAHVLRDAGADPRELLGIGIGVPGIIERDGPEGAVVHGQTMGWSAVPFEKLLRAAVDIPAEVPLFIDNGAKTLGQAEMWFGGGRGTGTAAIALIGSGVGASVIHGGEGGTLDENQRSSALEWGHTTVQMRGRRCRCGSIGCLEAYAGAEAMRERWQEAGGPLPADADDETALAALLGAAFPPPGGAAPDPVAVALLDETAECLGAAVADLINLFLPERVLLGGWAGLLIGPHLLPDIRRYAREYALRHTAARATVEMGRLGPDAVTVGAATLPLTDFLARGGTRPLPPAPDTGPPPRWARAPT
>NZ_CP048397.1|WP_164253784.1|7040488_7041805_-|extracellular-solute-binding-protein
MRRIRAAAVITLTTALAATVTGCGGGTSTGEGGSNDSPKTLTYWASNQGPNIEADKKILTPELKKFEKETGIKVKLEVVPWSDLLTRILAATTSGQGPDVLNIGNTWSASLQATGALLPWDDKNFEAIGGRDRFVDSAVASAGAEGRPPAAVPLYSLAYALYYNKQMFADAGIDGPPATWDELVADGKKLSKDGKWALGAEGGNLSNNIHQVFALSQQHGADFFDASGEPTFTTDGNVAAVKQYVDFMAKDKIIAPGNAEYAQNQSLTDFAKGKTAMVLWQAAASTFASQGMEPEDWGAAPVPVPSGAPGADKQVNSMVAGINIAVFKNTKNVDGAKKFVKFMTSDAEQKLLNKTYGSIPPVAAAQADPAFAAPDLKVLRDTLAGSAAPLPQVPEESQFETAVGTAVKDLWADAASGTPVTTESVKKRLDKAQQQMQQ
>NZ_CP048397.1|WP_164253783.1|7039467_7040478_-|ABC-transporter-permease-subunit
MTSTVTPPVRKTGSGADRGDGGARRRRLPRIPDRIRHGGLPYLLLLPAVLLELLVHIVPMVIGIVMSFRELTQFYINNWDKAPWRAFDNYKIVVDFDAPLGEALLHSFYVTCLFTVITVGLSWLFGMAAAIMLQENFRGRGLLRAVFLTPYALPVYAAVITWAFMFQRDNGIINHVLHDQLGLTDEPSFWLIGDNSFIALVVVAVWKSWPFAFLMLMAGLQNIPRELYEAASIDGAGVWQQIRKITLPSLRPVNQVLVLVLFLWTFNDFNTPYVLFGDSAPEAANLISIHIYQSSFVTWNFGTGSAMSVLLLLFLLLVTAVYLVATSRGRKGSGAV
>NZ_CP048397.1|WP_164255219.1|7038599_7039463_-|ABC-transporter-permease-subunit
MAGKARSPLAPPASFLWTRRIILAFLTAFALLPVYVMVSSSLKPLEDVTGKFQWIPSEITIRPYFDIWDTVPLAHYFVNSLIVAGAATVLSVTIAVFSAYAVSRYRFRGKRVFTVTVLSTQMFPGILFLLPLFLIFVKIGNSTGVALYGSRGGLILTYLTFSLPFSIWMLIGYFDSIPRDLDEAAMVDGCGPFGALFRVVVPAAIPGIVAVSVYAFMTAWGEVLFASVMTNDETRTLAVGLQGYATQNDVYWNQIMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK
>NZ_CP048397.1|WP_164253782.1|7037172_7038537_-|beta-glucosidase
MNDLNALPHDFLWGVATAAYQIEGAVAEDGRSPSIWDTFSHTPGKVDNGDTGDIACDHYHRVPEDIGLMKRLGVGSYRFSLAWPRVVPGGDGPVNEAGIAFYDRLVDSLLEAGITPFATLYHWDLPQTLQDRGGWPARETAEHFAAYASVVAERLGDRVKDWATLNEPLCSAWIGHLEGRMAPGLTDIKAAVHASYHLHLGHGLAVQAIRAASSDARVGIVNNLSPIEAATDREADRAAAVRADGHINRWWLDPVHGRGYPQDMLDLYGVELPERPGDLETIAAPLDWLGLNYYFRQVVADDPAGPAPYAKQVYLPGVRHTAMDWEVHADGLEELLVRLTEEYGAQRVYVTENGSAYPDVLRDDGTVDDPERTRYLEEHLAACARAVRKGVPLAGYFAWSLLDNFEWAYGYDKRFGLVHVDYASQRRTIKSSGYRYAEIIRESAARKRWSVSGK
>NZ_CP048397.1|WP_164255217.1|7036051_7036951_+|carbohydrate-kinase
MGEALIDLVPTAGDAEEHRAQPGGAPANVATGLARLSTPSWFAGALGNDGFARSIERRLVSAGVELGLCARPDLPTALAVADPGPEGTGYHFHLQHTATFQLPDRTDVERFAAVYVGGLAAVVEPAASAVVTTARAAAAGGSLLVVDPNVREDRTLDAEGGAAKLRELCELAQVVKASDEDLARLWPESAPEETCRRLAGGGRLVVLTRGSRGSTAYTGSAEPVSVPAVPVEVVNTIGAGDAFMAAMITWMVSGGVHPAAGAGEFTRAQALEMLGFASRVAASVVAQAGTEPSLPEARV
>NZ_CP048397.1|WP_164253781.1|7035005_7035995_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRAAIVEGVGKVSVTTVPDPTPGPRDVVVSVAACGICGTDLHILQGEFAPTLPILPGHEFAGEVVGVGADVTELVVGDKVAVDPSLYCHECRYCRAGRGNLCDRWNAIGVSVPGGAAEFAVAPVANCVKLPDHVDVRDAALIEPLSCAVRGYDVLSSTLGADVLIYGSGTMGLMMLELAKRTGAAGVDMLDVNPERLATASKLGCSRAAASAEEFDRPGGWDVVIDATGNAGAIQDGLGRVAKGGTFLQFGVSDYATKAVIEPYKIYNQEITITGSMAVLHSYERAAALFATGVLDPAVFISDRLPLEQYPQAIERFKAGQGRKIVVEP
>NZ_CP048397.1|WP_164253780.1|7034091_7035009_+|ABC-transporter-permease-subunit
MSTLSAPKTAGAPGKASTPAQHQDKYGPAARRAKRRSTALGLLAWVIGIVFCFPALWMLLTSLHSESDAATNPPSLTAPLTFDNFSAFFGAEGGASPWPPLINSVTASVFSTLFVLVLALPAAYALSIKPVRKWTDVMFFFLSTKMLPVVAGLLPVYLFAKNVGMLDNIWLLVILYTSMNLPIAVWMMQSFLADVPVSIIEAAQVDGARVPTVLMRVVAPVAAPGIAATALICFIFSWNELLFARVLTGVTAQTAPVFLTGFVTSQGLFLAQLCAASVVVSLPVLAAGFAAQDKLVQGLSLGAVK
>NZ_CP048397.1|WP_164253779.1|7033108_7034095_+|ABC-transporter-permease-subunit
MSTSVSAAPPPAPPDPSPPAESRPPAAPRSGRARAWATRAPLLPALIFLIAVTQLPFVATLFISLFDWNSLNPDARSFAGLSNYGSVFTDADLRDSVFTTMLLTATVVIASVVLGLLLALLLDRKFMGRGFVRTLLITPFLLVPVSAALLWKHVLYNPEYGLLNGGWAWFTGLFGVEDPSQPDWISDMPLLAVEASLVWQWTPFMMLILLAGLQSRPLDMMEAARLDGANAWQMFAFLTLPHLRRYLELGVLLGSIYIVQNFDAVFTITAGGLGTANLPYTIYQTFYQAHEYGLASAAGVVVVIGTIVIATFALRVVSSLFSEEARRA
>NZ_CP048397.1|WP_164253778.1|7031753_7033112_+|extracellular-solute-binding-protein
MPLQQRRRGIGVRVGAGAALTALLAGCSGAGGTGSDGGDTLNVLMVNNPQMVELQKLTAANFTKDTGIKVNFTVLPENDVRDKISQDFSNQAGQYDVATISNFEVPFFAKNGWLHTLDEYAQKDKKFDQGDILKPLQESLTAEDGKLYGQPFYGESSFLMYRKDVFDAKNLKMPANPTWQEVADLAAKTDGAEKGMKGICLRGLPGWGEVIAPLTTVVNTMGGTWFTEDWEAQLTSPEFKKATKFYVDLVREHGEAGAPQAGYAECLNNMTQGKTSMWYDATAGAGSLEAKDSPVKGKIGYVPAPVDKTDSSGWLYTWAWGMQKASNNTDNAWKFISWASGKEYEKLVGEKIGWSNVPAGKRASTYINPDYRKEAAAFADVTSEAISSANPRDPGTQPRPTVGIQFVGIPEFTDLGTKVSQEISEAIAGRQSVDEALEASQKLAEKVAEEYR
>NZ_CP048397.1|WP_164253785.1|7043608_7044727_-|substrate-binding-domain-containing-protein
MTEDSRAVGAPTLEDVAKAAGVSRATVSRVINGVRNVDPVIQAAVRDAVSVTGYTPNRAARSLVTRKADSIALVVSGAGDDPPPVAATAGGGGDDCGREGAGFGGGMGSFMTDVFADPFFGRVVTGVVTFLRPRGIHPVLMFAETSRARDEAVSYLRQGSADGALVVSTHAEDPLPALITDAGLPAVLYARPARPVRISYVDLAHQDGARLAAEHLLARGCRRIVTIAGPLDVPAGQDRLAGFRETMARQGHPYVPVAEGQFTEESGESAMERLLAEHPDLDGVFAANDLMAVGACRVLRELGRRVPEDVAVIGFDDSRAAASCRPPLTTVRQPVEDMAAEMARLLLDRLARPERPVTSVIFEPTLVLRASA
>NZ_CP048397.1|WP_164253786.1|7044743_7047287_-|glycosyl-hydrolase
MAEDETGRLLEKLDFGQKIRLLTGASNWRTYAEPAVGLRPLTMSDGPAGVRGETWDERRTSLVLPSPTALAASWDEELVRDLGGLLATEARRKGVQVLLAPTLNLHRSPLGGRHFECFSEDPLLTARTGVAFVKGVQEGGVAATAKHFVANDAETDRLHVDVRVTERALRELYLAPFEAAVEAGVWAVMSAYNKVNGVTMSASPLLEWPLKGDRPLPGNGPVQGGWGFDGLVLSDWGAVRSLLGSARSGQDLAMPGPESPWAAGLLATVTAGLIDEARIDDKVRRLLRLARRVGALGEPAPRRRPLIPPAGERALLRRAVAAGTVLLRNERDVLPLDPARLRRVAVIGPQATAVRIQGGGSAEVFPSSVVTPLEGIEAALGEAPVEAGDGYRPEVTYTPGLPPHTRPRPLDPAWTRDPRGGEPGVLVRLLDAHGAELHAEHRLSGRIVEPARVAGAVTVEISALVRPARSGSWTLGVGGWGLISLSVDGRTLLSDEFPLDSDDPTRVHVSPPYRCVRAELTEGVESEVVARRRLDAGTGVATLLAAAPPPGDAPTALAAAEAAARAADVAVVVVGTTQESESEGRDRDSLALPDGQDALVRAVVRANPRTVVLVNSGGPVAMPWHREVPALLLSWFPGQEAGHGLADVLFGRAEPGGRLPTTWALAEEDVPVLDTRPRDGRLPYEEGVHIGHRAWLRAGARPAYWFGHGLGYTTWTYEGMEAPSAVSGDGAGVEVRVRLRNTGPRRGREVVQVYVARTDTAVDRPVRALAGYASVEADPGEEAVATVRLAARALSHWSTDHGRWETEPGTFTLLAGSSAGELPLRTTLTVAAPGPLAPDASMESALR
>NZ_CP048397.1|WP_164253787.1|7047520_7048810_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MAATGRHRRYQPSRINRASLTVTAGGAGIALPLIGASTVNAAPVETWEKVAACESTNNWQINTGNGYYGGLQFSQSTWEAFGGGQYAPRADLATKDQQIAVAEKVLKGQGPQAWPHCSVKAGLTRGGDAPDVSPAKARDTGDSRDAASARKASDTAKRTPRSDPKKAASPTSVPTEREGYTVAGGDSLSGIAAAQELRGGWQRLYEENRKVIGSDPDLIFPGQKLVLHVPAPAKDKPAAEAPAPPKEEAKKPAARQAQPPKQAEKPKPKPQAEKPKEQPEQRQVSKPKTAEKPKQSSGFSAPVSAGTGTPYRKAGSWASGYHTGVDFPVPTGTSVKAVAGGTVVSAGWEGSYGYQVVIRHTDGKYSQYAHLSALNVRDGQKVNAGQRIARSGSTGNSTGPHLHFEMRTGPGYGSDIDPISYLRAAGVRI
>NZ_CP048397.1|WP_164253788.1|7048690_7049842_-|hypothetical-protein
MSALALSVLLSLVSAVAYAAGAILQERVAAATPARPYAPLHHGVWWAAVALNGVGALLHVVALAYGPLSLVQPLGALTIVFALPMAAVFVRRKAGAAAWRGALMATLGLAGLLALAGSAGSHSLGSGERMVVAGATVGVVALLFLIAQAVHRPAVRSVLLAASAGVAFGIASVFTKTVAVNWTEGTFNGQVPSLLVIAGLAAAGLLLSQASYRGAGLAAPLATVTVVNPVVAAAVGLTLFGEGFRYGLTGALLALGFGVVTAGGLVLLTTERLAAQTAAALEEEPAGAEPAEPEAAPGPGTAGATATHHHAGPDHRLPWHLIPRKGTHEPQHKAVRRTVRRTVRSDADAGRPQVGDGVDVGAVAGPRTHLEVEMRSRTVSGRS
>NZ_CP048397.1|WP_164253789.1|7050065_7050830_+|ferric-iron-reductase
MDLAEVGSVGGFFALRTGELGGPAEPGAHARAYVPFAQIYEGDIAPLSARVDRVAVKLGAPERRIAASVAQLGLAARLWSIALGSAALHGEVPDLDPARLFWDPLGSSPDDLRLSGPRPLPAANGAAGASVDGLADLAVAVRDVVQHGHLVPLAAALRADGRISPGLLWGNAGSALTGAVRELGAWSRRAGRPEAGERAAAIGAALFTHPDLRTTGVSWNGSFRRRSCCLYYRCPSGGLCGDCVFDRPPQRPSA
>NZ_CP048397.1|WP_164253790.1|7050885_7052067_+|glycogen-synthase
MKVGLLTREYPPDVYGGAGVHVEFLARELRELTDLGVHCWGEHGGSDEERALGVVRHRAAPGLEGANDALRTFSVDLAMAAAVNGSDLVHSHTWYAALAGHVSKMLYGIPHVMTAHSLEPLRPWKAEQLGGGYALSGWAERSAIEAADAVVAVSHGMRADILDCYPSLDPDRVRVIHNGIDTRLYHPDPGTDVLARIGIDPDRPFVLFVGRITRQKGVPHLLRAARALDPEAQLVLCAGAPDTPEIEAEFRELVDELSGSRDGVFWIPEMLPRPDVVQLLGHATAFVCPSVYEPLGIVNLEAMACGTAVVASAVGGIPEVVDDGSTGLLVPYDERHPEDFESALTETLNRVLDDPESAAAMGAAGRDRAVREFGWDRVARRTYEVYEELLKSR
>NZ_CP048397.1|WP_164253791.1|7052121_7053339_+|glucose-1-phosphate-adenylyltransferase
MRGGPSVLGIVLAGGEGKRLMPLTADRAKPAVTFGGTYRLVDFVLSNLVNGDVMRNCVLTQYKSHSLDRHVSTTWRMSSLLGNYVTPVPAQQRLGPRWYLGSADAILQSLNLVHDEQPDYIAVFGADHVYRMDPRQMLQRHIESGAGVTVAGIRVPRAEASSFGIITPGPDGTRVDRFQEKPSDAPGLPGDPEHVFASMGNYLFTTKILVDALHRDAEDRTSVHDMGGSILPMLTEQGMAQVYDFDDNHVPGETPREHGYWRDVGTLDSYYDAHMDLISHQPEFNLDNRRWPIYTHAGQLPPARFVAGGIASESIVGPGCVIRGQVTRSVLSPGVVIEEGAVVQGSVLHDNVRVGRGAVVRGSILDKNVDVPPGATIGVNPGRDEELYTVSKNGVIALGKGQPVL
>NZ_CP048397.1|WP_164253792.1|7053419_7054469_-|ABC-transporter-permease
MTHTHTERPARATGTGPSPGEDPSDEAPLGASRAERLSALAQQHGALVTLLLVAIGASIGFDTFLTGDNLENMAVSSAFLAIVALGMTFVIITGGIDLSVGSLFALGGVLGAWGSQYGTLVALLLPLAVCGLIGLVNGLLIAKARLAPFIVTLAAMLAARGILLAITDEGSNTYLVDEKSFFASLGQEKLLGVGVPVWITAALFVAGAVMLRRSRFGQYVYAVGGNEDAAALMGAPVARTKIAVYTLSGLCAGLAGALNAAWLVSGVTILGTGMELEAIAAVVIGGTLLTGGFGFISGSLVGVLLLKVIQNVINQIGSLDSAYQQVVSGAFLAVVVIAQTWLGRRRRMM
>NZ_CP048397.1|WP_147877873.1|7054465_7055428_-|ABC-transporter-permease
MTELALKGAPLDRARLLRLLQDYGVYAGVAVLLLVNIALTPHFLSTENFRTQAVQVAPVLIVALGMALAIGSEGVDLSVGSVMALSTSLLSLYLGYGPWVALIVAMLGGAVIGLANGSLIAFIGVQPIVATLALMVAGRGIALVLLPQLKDVRDPGMSSLGSGDLFGIPYLVLIAAALALAVGFTVRRTTFGRQLLAIGDSRPAAQLAGLPVRRVLILVYVIAGVLAAIAGVLATARLQASDPTSLGTLMELSAITAVVVGGTPLSGGRIRIGGTVAGAVLIQLLTATLIKHDLPPSWTQIAQAVVIVLAVYAARERGKR
>NZ_CP048397.1|WP_164255221.1|7055420_7057082_-|ATP-binding-cassette-domain-containing-protein
MWARLSDVLSVTGLTKTFPGARALDGVDFAALPGEVHALIGENGAGKSTLIKVLTGVYQPDEGEIVHAGAPVRFQTPLEAQHAGISTIYQEVNLVPLMSVARNLFLGREPRNRFGLIDFRRMHGEADEALRSLGLRVDVKRPLRTLGVGAQQMVALARAVSVDARVVIMDEPTSSLEPREVSTLFGVIRMLKERDIAVVYVSHRLDELYEVCDKVTVLRDGKLVHTGPIAELDRLRLVSLMLGREMGEVSSEGVTRFTGDHHAGREPVLSATELTVRHTLHEVSVEVRPGEVVGLGGLLGSGRSETAKAIAGALPPDSGKVVVAGSAVRTGSTPAAIRAGISLLPEDRKAEGIVPGLSVRENIALAALPGLSRFGLVDDTKVDKIVNTFMKRLRIKASGPHQKVGELSGGNQQKVLLARWLAMQPKVLLLDEPTRGIDVGAKAEVQGLIDELADEGLGVLLISSDMEELIEGSDRVVVLKDGAVVAELTGDDVTQDRLLQAIAAAPESDAALKTVAPDAAAIVAPGSAPVAPEPAPAAVPVDKTSSGGERDHD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	KR053201	Gordonia phage GTE8, complete genome	353-382	6	0.8
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	111518-111547	6	0.8
NZ_CP048397_12	12.1\|6573382\|30\|NZ_CP048397\|CRISPRCasFinder	6573382-6573411	30	NZ_CP016618	Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence	473883-473912	6	0.8
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	131740-131769	7	0.767
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	KT820175	Ruegeria phage 45A6, complete genome	33622-33651	7	0.767
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	40929-40958	7	0.767
NZ_CP048397_9	9.2\|4121533\|30\|NZ_CP048397\|CRISPRCasFinder	4121533-4121562	30	NZ_CP011274	Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence	9027-9056	7	0.767
NZ_CP048397_9	9.2\|4121533\|30\|NZ_CP048397\|CRISPRCasFinder	4121533-4121562	30	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	67218-67247	7	0.767
NZ_CP048397_12	12.1\|6573382\|30\|NZ_CP048397\|CRISPRCasFinder	6573382-6573411	30	MK524490	Mycobacterium phage Donny, complete genome	46624-46653	7	0.767
NZ_CP048397_12	12.1\|6573382\|30\|NZ_CP048397\|CRISPRCasFinder	6573382-6573411	30	MT889381	Mycobacterium phage Suigeneris, complete genome	46624-46653	7	0.767
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	185820-185849	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1988669-1988698	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	53900-53929	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	460398-460427	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NC_024972	Micrococcus sp. A1 plasmid pLMA1, complete sequence	30044-30073	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	MK450426	Streptomyces phage Euratis, complete genome	11660-11689	8	0.733
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	KY965934	Halorubrum pleomorphic virus 9 strain B2-2/SS5-4, complete genome	9328-9357	8	0.733
NZ_CP048397_9	9.2\|4121533\|30\|NZ_CP048397\|CRISPRCasFinder	4121533-4121562	30	NZ_CP007516	Rubrobacter radiotolerans strain RSPS-4 plasmid 2, complete sequence	122144-122173	8	0.733
NZ_CP048397_9	9.2\|4121533\|30\|NZ_CP048397\|CRISPRCasFinder	4121533-4121562	30	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	552263-552292	8	0.733
NZ_CP048397_12	12.1\|6573382\|30\|NZ_CP048397\|CRISPRCasFinder	6573382-6573411	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	391101-391130	8	0.733
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	170174-170205	8	0.75
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	52219-52250	8	0.75
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	270453-270484	8	0.75
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	162078-162109	8	0.75
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	534458-534489	8	0.75
NZ_CP048397_5	5.3\|3173454\|37\|NZ_CP048397\|CRISPRCasFinder	3173454-3173490	37	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	455046-455082	9	0.757
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	57614-57643	9	0.7
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	415117-415146	9	0.7
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	MK937605	Mycobacterium phage Stephig9, complete genome	1947-1976	9	0.7
NZ_CP048397_9	9.1\|4121473\|30\|NZ_CP048397\|CRISPRCasFinder	4121473-4121502	30	NZ_CP049911	Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence	1639-1668	10	0.667
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	25679-25710	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	112098-112129	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP020568	Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence	239778-239809	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1365763-1365794	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	83218-83249	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	624749-624780	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	23817-23848	10	0.688
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	173357-173388	11	0.656
NZ_CP048397_14	14.1\|7043541\|32\|NZ_CP048397\|CRISPRCasFinder	7043541-7043572	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	154710-154741	12	0.625

1. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to KR053201 (Gordonia phage GTE8, complete genome) position: , mismatch: 6, identity: 0.8

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
tttccggcgacgattccggcgtaccagggc	Protospacer
.************  ********** *. *

2. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 6, identity: 0.8

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
cttccggcgacgaggccgtcgggaccgcca	Protospacer
****************** ** . *** *

3. spacer 12.1|6573382|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

aaatccgccgaccgggctggaaggggccgc	CRISPR spacer
ccatccgccgatcgggctggaagggacggg	Protospacer
  *********.*************.* *

4. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 7, identity: 0.767

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
tcggcggcgacgaggccggcgtgcacgacg	Protospacer
..  ******************.* ****

5. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to KT820175 (Ruegeria phage 45A6, complete genome) position: , mismatch: 7, identity: 0.767

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
acaatggcgacgaggccggcgtaacagacc	Protospacer
 .  .****************** * ****

6. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cttccggcgacgaggccggcgtac--ccgacc	CRISPR spacer
gccccggcgaccaggccggcgtactgccgg--	Protospacer
 ..******** ************  ***.

7. spacer 9.2|4121533|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP011274 (Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcggaccccggacgactccgacgacgaat	CRISPR spacer
cgcggacccgggacgtctccgacgtcaccg	Protospacer
********* ***** ******** *.

8. spacer 9.2|4121533|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgcggaccccggacgactccgacg---acgaat	CRISPR spacer
agcagatcccggacgactccgacgtgcccg---	Protospacer
 **.**.*****************    **

9. spacer 12.1|6573382|30|NZ_CP048397|CRISPRCasFinder matches to MK524490 (Mycobacterium phage Donny, complete genome) position: , mismatch: 7, identity: 0.767

aaatccgccgaccgggctggaaggggccgc	CRISPR spacer
cgacctgccgaccgcgctggaaggtgccga	Protospacer
 .*.*.******** ********* ****

10. spacer 12.1|6573382|30|NZ_CP048397|CRISPRCasFinder matches to MT889381 (Mycobacterium phage Suigeneris, complete genome) position: , mismatch: 7, identity: 0.767

aaatccgccgaccgggctggaaggggccgc	CRISPR spacer
cgacctgccgaccgcgctggaaggtgccga	Protospacer
 .*.*.******** ********* ****

11. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
tttccggcgacgagggcggcgaacgtcggc	Protospacer
.************** ***** ** . . *

12. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
ttcagaacgaggaggccggcgtgcccgacc	Protospacer
.*.  ..*** ***********.*******

13. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
ccgacggcgacgaggccgacgtaccgccac	Protospacer
*.  **************.******    *

14. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
ttgtcggcgccgaggccggcgtacgcgcag	Protospacer
.* .***** ************** **

15. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NC_024972 (Micrococcus sp. A1 plasmid pLMA1, complete sequence) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
ccgacggcgacgaggccgacgtaccgccac	Protospacer
*.  **************.******    *

16. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to MK450426 (Streptomyces phage Euratis, complete genome) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
gctgaggcgacgcggccggcgtaccctgca	Protospacer
 .*  ******* ************* .*

17. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to KY965934 (Halorubrum pleomorphic virus 9 strain B2-2/SS5-4, complete genome) position: , mismatch: 8, identity: 0.733

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
cggtcgtcgacgagcccggcgtacccgcgg	Protospacer
*  .** ******* ************

18. spacer 9.2|4121533|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP007516 (Rubrobacter radiotolerans strain RSPS-4 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.733

cgcggaccccggacgactccgacgacgaat	CRISPR spacer
tcaagagcccggacgtctccgacgacgacg	Protospacer
.  .** ******** ************

19. spacer 9.2|4121533|30|NZ_CP048397|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.733

cgcggaccccggacgactccgacgacgaat	CRISPR spacer
tgtccgcctcggccgactccgacgacgaac	Protospacer
.*.  .**.*** ****************.

20. spacer 12.1|6573382|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatccgccgaccgggctggaaggggccgc	CRISPR spacer
cctgccgccgacccggctggaacgggcccg	Protospacer
    ********* ******** *****

21. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ggcggccctggccccgcgccgggggcagatgc	Protospacer
*. ***** ******* **********   .*

22. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ggcggccctggccccgcgccgggggcagatgc	Protospacer
*. ***** ******* **********   .*

23. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ggcggccctggccccgcgccgggggcagatgc	Protospacer
*. ***** ******* **********   .*

24. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ggcggccctggccccgcgccgggggcagatgc	Protospacer
*. ***** ******* **********   .*

25. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.75

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ggaaacgcgggccccgggccggcggcagcagg	Protospacer
*.*..* *************** **** **.

26. spacer 5.3|3173454|37|NZ_CP048397|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.757

cctggcgcgtgacgcgttcggccggatcgtgaccctc	CRISPR spacer
cggcacgcgtgacggggtcggccggatcgtgagcgtg	Protospacer
*   .********* * *************** * *

27. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 9, identity: 0.7

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
gccttggcgaagaggccggcgtacccgcgg	Protospacer
 ....***** ****************

28. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 9, identity: 0.7

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
acgtacccgacgaggacgtcgtacccgacc	Protospacer
 . .   ******** ** ***********

29. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to MK937605 (Mycobacterium phage Stephig9, complete genome) position: , mismatch: 9, identity: 0.7

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
accgcgccgacgaggccggcgaacccgttg	Protospacer
 .. ** ************** ***** .

30. spacer 9.1|4121473|30|NZ_CP048397|CRISPRCasFinder matches to NZ_CP049911 (Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

cttccggcgacgaggccggcgtacccgacc	CRISPR spacer
gcctgatcgaccaggccggcgtacccgatg	Protospacer
 ... . **** ****************.

31. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
ctcctcccgggccccgggccggtgccatcgcg	Protospacer
     ***************** * ****.

32. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
cccggcccgtgccccgggccgcgggcgggggc	Protospacer
   ****** *********** ****.  ..*

33. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP020568 (Kitasatospora aureofaciens strain DM-1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
cggtgcccgggccccgggccccgggcaccggg	Protospacer
 .. ****************  *****.*..

34. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
aggcgaccgggtcccgggccggggccatcgcg	Protospacer
... * *****.************ ****.

35. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
aggcgaccgggtcccgggccggggccatcgcg	Protospacer
... * *****.************ ****.

36. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
aggcgaccgggtcccgggccggggccatcgcg	Protospacer
... * *****.************ ****.

37. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
gaaggcccaggcaccgggccgggccgctgtgt	Protospacer
********.*** **********    *  ..

38. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 11, identity: 0.656

gaaggcccgggccccgggccgggggcatcaac----	CRISPR spacer
---cgcccgcgccccgggcc-ggggcgcgggccttc	Protospacer
    ***** ********** *****.. ..*

39. spacer 14.1|7043541|32|NZ_CP048397|CRISPRCasFinder matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 12, identity: 0.625

---gaaggcccgggccccgggccgggggcatcaac	CRISPR spacer
gtctctgccccgggccccgggcccgggcactg---	Protospacer
      * *************** ***   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2329 : 59516

Gordonia_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164247444.1\|2329_3137_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_164254299.1\|3441_5268_+	hypothetical protein	NA	NA	NA	NA
WP_164247446.1\|5473_6247_+	AAA family ATPase	NA	NA	NA	NA
WP_164247448.1\|6563_7184_-	hypothetical protein	NA	NA	NA	NA
WP_164247450.1\|7184_9974_-	hypothetical protein	NA	NA	NA	NA
WP_164247452.1\|10525_11350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147878444.1\|11408_11681_-	hypothetical protein	NA	NA	NA	NA
WP_164247454.1\|11863_12100_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_164247456.1\|12764_13277_-	hypothetical protein	NA	NA	NA	NA
WP_164247458.1\|13557_14262_+	hypothetical protein	NA	NA	NA	NA
WP_164247460.1\|14280_14754_-	hypothetical protein	NA	NA	NA	NA
WP_164247462.1\|15265_15838_-	transcriptional regulator	NA	NA	NA	NA
WP_164247464.1\|17350_17683_-	hypothetical protein	NA	NA	NA	NA
WP_164247466.1\|18013_18313_+\|transposase	transposase	NA	NA	NA	NA
WP_164247468.1\|18309_19197_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_164247470.1\|19227_19578_-	hypothetical protein	NA	NA	NA	NA
WP_164247473.1\|20790_21099_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	54.4
WP_164247475.1\|21095_22013_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.6e-45	41.2
WP_164247477.1\|23417_24854_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_164247479.1\|25302_26595_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.5e-35	36.4
WP_164254300.1\|27032_27926_-	Dyp-type peroxidase	NA	NA	NA	NA
WP_164247481.1\|28131_28527_-	hypothetical protein	NA	NA	NA	NA
WP_164254301.1\|28536_29097_-	hypothetical protein	NA	NA	NA	NA
WP_164247483.1\|28877_30257_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_164247485.1\|30278_35966_-	hypothetical protein	NA	NA	NA	NA
WP_164247487.1\|37805_40868_-	alpha-mannosidase	NA	NA	NA	NA
WP_164247490.1\|40964_42059_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_164247492.1\|42136_43126_-	ROK family protein	NA	NA	NA	NA
WP_164254302.1\|43122_44775_-	hypothetical protein	NA	NA	NA	NA
WP_164247494.1\|45121_46435_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_164247496.1\|46431_47391_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_164247498.1\|47393_48254_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_164247500.1\|48303_49485_+	hydrolase	NA	NA	NA	NA
WP_164247502.1\|49542_52650_+	alpha-mannosidase	NA	NA	NA	NA
WP_164247504.1\|52687_53644_+\|transposase	transposase	NA	NA	NA	NA
WP_164247506.1\|54584_55949_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_164254303.1\|55986_56355_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_164247508.1\|56351_57095_+	TSUP family transporter	NA	NA	NA	NA
WP_124276065.1\|57119_57398_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_164247510.1\|57490_58057_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_164254304.1\|58080_58266_-	hypothetical protein	NA	NA	NA	NA
WP_164247512.1\|58598_59516_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	9.5e-48	41.7

DBSCAN-SWA_2

1392283 : 1399286

Streptomyces_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164249344.1\|1392283_1393021_+	nucleotidyltransferase	A0A1J0GW18	Streptomyces_phage	3.0e-12	34.3
WP_164254407.1\|1392952_1393789_-	nucleotidyltransferase domain-containing protein	K4K696	Caulobacter_phage	1.1e-07	39.6
WP_164249346.1\|1393798_1394821_-	ADP-ribosylglycohydrolase family protein	A0A2D0ZND4	Rhodococcus_phage	2.5e-25	31.6
WP_164249348.1\|1394817_1395588_-	NUDIX domain-containing protein	A0A0E3JJF3	Streptomyces_phage	3.2e-20	48.1
WP_164254408.1\|1395593_1396667_-	AAA family ATPase	I7K2N1	Yersinia_phage	1.1e-31	31.4
WP_164249350.1\|1396687_1397341_-	nicotinamide mononucleotide transporter	A0A0F6YPU8	Sinorhizobium_phage	2.7e-12	30.7
WP_164249352.1\|1397457_1398651_-	pseudouridine synthase	NA	NA	NA	NA
WP_147877473.1\|1398650_1399286_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.9e-11	28.7

DBSCAN-SWA_3

3482471 : 3554654

Catovirus(17.65%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164254598.1\|3482471_3483734_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_164251602.1\|3483803_3484868_-	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	5.7e-20	51.9
WP_164251603.1\|3486868_3487615_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_147878044.1\|3487907_3488087_-	hypothetical protein	NA	NA	NA	NA
WP_147878129.1\|3488189_3488843_+	HAD-IA family hydrolase	Q6VY93	Streptomyces_phage	9.1e-85	71.6
WP_164251604.1\|3488939_3489152_-	hypothetical protein	NA	NA	NA	NA
WP_164251605.1\|3489328_3489535_+	antitoxin	NA	NA	NA	NA
WP_164251606.1\|3489669_3490101_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
WP_164251607.1\|3490181_3490778_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_164251608.1\|3490860_3491757_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_164251609.1\|3491879_3493925_+	AfsR/SARP family transcriptional regulator	NA	NA	NA	NA
WP_164251610.1\|3494178_3494886_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_164251611.1\|3495026_3496607_-	hypothetical protein	NA	NA	NA	NA
WP_164251612.1\|3497134_3497962_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_164251613.1\|3498035_3499001_+	hypothetical protein	NA	NA	NA	NA
WP_164251614.1\|3499139_3500651_-	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	1.8e-35	27.2
WP_147878055.1\|3500971_3501175_-	cold shock domain-containing protein	A0A1X9IGI9	Lactococcus_phage	1.6e-16	65.6
WP_164251615.1\|3501673_3502009_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_164254599.1\|3503971_3504766_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164251616.1\|3504851_3505034_+	hypothetical protein	NA	NA	NA	NA
WP_164251617.1\|3505546_3506011_+	hypothetical protein	NA	NA	NA	NA
WP_164251618.1\|3506677_3506851_-	hypothetical protein	NA	NA	NA	NA
WP_164251619.1\|3507186_3509316_-	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	8.2e-42	30.5
WP_164251620.1\|3509598_3510252_-	hypothetical protein	NA	NA	NA	NA
WP_164251621.1\|3510399_3510753_-	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_164251622.1\|3510749_3511256_-	CrcB family protein	NA	NA	NA	NA
WP_164251623.1\|3511252_3511705_-	metallopeptidase family protein	NA	NA	NA	NA
WP_164251624.1\|3511714_3513346_+	metallophosphoesterase	NA	NA	NA	NA
WP_164251625.1\|3513857_3517838_+	ATP-dependent RNA helicase HrpA	A0A1V0SBU4	Catovirus	4.4e-57	32.2
WP_003949541.1\|3518868_3519075_-	developmental transcriptional regulator BldC	NA	NA	NA	NA
WP_164251626.1\|3519577_3520426_-	hypothetical protein	NA	NA	NA	NA
WP_164251627.1\|3520579_3521680_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_078076416.1\|3521980_3522229_+	DUF3073 domain-containing protein	NA	NA	NA	NA
WP_147878067.1\|3522330_3523404_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.0e-56	38.3
WP_164251628.1\|3523548_3525066_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.7e-46	30.5
WP_164251629.1\|3525209_3526049_-	META domain-containing protein	NA	NA	NA	NA
WP_164251630.1\|3526120_3526915_-	maleylpyruvate isomerase family mycothiol-dependent enzyme	NA	NA	NA	NA
WP_164254600.1\|3527064_3527286_+	hypothetical protein	NA	NA	NA	NA
WP_164251631.1\|3528560_3530819_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.2e-278	63.0
WP_164251632.1\|3530818_3531499_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_078076409.1\|3531495_3531741_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_164254601.1\|3532165_3532477_+	Lsr2 family protein	A0A1J0GP53	Streptomyces_phage	1.6e-15	48.0
WP_164251633.1\|3532920_3533922_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.5e-19	31.1
WP_164251634.1\|3533918_3534731_+	ABC transporter permease	NA	NA	NA	NA
WP_164251635.1\|3534829_3536230_+	sensor histidine kinase	NA	NA	NA	NA
WP_147878133.1\|3536259_3536871_+	response regulator	NA	NA	NA	NA
WP_147878079.1\|3537026_3537926_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	2.2e-41	36.3
WP_164251636.1\|3538056_3539514_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_164251637.1\|3539918_3541691_-	hypothetical protein	NA	NA	NA	NA
WP_164251638.1\|3542041_3543298_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_164247504.1\|3543652_3544609_-\|transposase	transposase	NA	NA	NA	NA
WP_164251639.1\|3544658_3546116_-\|transposase	transposase	NA	NA	NA	NA
WP_164251640.1\|3546256_3548554_-	DNA polymerase III subunit gamma and tau	A0A1L2BWV7	Bacteriophage	2.9e-45	33.6
WP_164251641.1\|3549170_3550847_+	SAM-dependent methyltransferase	Q8V6N5	Halorubrum_phage	8.7e-15	24.0
WP_030594928.1\|3550858_3551584_+	type II site-specific deoxyribonuclease	NA	NA	NA	NA
WP_164251642.1\|3551918_3552401_-	hypothetical protein	NA	NA	NA	NA
WP_164247473.1\|3552523_3552832_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	54.4
WP_164251339.1\|3552828_3553746_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	4.4e-45	41.2
WP_164251643.1\|3553845_3554271_-	hypothetical protein	NA	NA	NA	NA
WP_164247473.1\|3554345_3554654_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	54.4

DBSCAN-SWA_4

4041808 : 4090788

Bacillus_phage(28.57%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164250193.1\|4041808_4043010_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.8e-31	34.5
WP_164251981.1\|4043465_4044089_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_164251982.1\|4044222_4045302_+	aldo/keto reductase	NA	NA	NA	NA
WP_164251983.1\|4046203_4046845_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_164251984.1\|4046913_4049205_+	MMPL family transporter	NA	NA	NA	NA
WP_164251985.1\|4049499_4050483_+	sporulation protein	NA	NA	NA	NA
WP_164251986.1\|4050711_4051665_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_164251987.1\|4051668_4052064_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_164251988.1\|4052231_4052585_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_164251989.1\|4053014_4053911_+	erythromycin esterase family protein	NA	NA	NA	NA
WP_164251990.1\|4054302_4055946_+	hypothetical protein	NA	NA	NA	NA
WP_164254671.1\|4056213_4056813_+	hypothetical protein	NA	NA	NA	NA
WP_164254673.1\|4056938_4058180_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_164251991.1\|4058297_4058882_+	TerD family protein	A0A2P1N0C0	Streptomyces_phage	8.8e-39	43.9
WP_164254675.1\|4059099_4060353_-	MFS transporter	NA	NA	NA	NA
WP_147873421.1\|4060613_4061351_+	methyltransferase	NA	NA	NA	NA
WP_164251992.1\|4061347_4062226_+	hypothetical protein	NA	NA	NA	NA
WP_164251993.1\|4062273_4063347_+	GHMP kinase	NA	NA	NA	NA
WP_164251994.1\|4063267_4064296_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_164254678.1\|4064433_4065447_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_164251995.1\|4065448_4066222_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	9.9e-14	30.6
WP_164251996.1\|4066244_4067264_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_164251997.1\|4067418_4068966_+	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	1.2e-37	28.5
WP_164251998.1\|4069183_4069780_+	hypothetical protein	NA	NA	NA	NA
WP_164251999.1\|4070004_4070949_+	hypothetical protein	NA	NA	NA	NA
WP_164252000.1\|4071023_4071503_+	VOC family protein	NA	NA	NA	NA
WP_164252001.1\|4071641_4071890_+	SCO4226 family nickel-binding protein	NA	NA	NA	NA
WP_164252002.1\|4072100_4072874_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_164252003.1\|4072928_4073249_-	GYD domain-containing protein	NA	NA	NA	NA
WP_147873433.1\|4073369_4073579_-	hypothetical protein	NA	NA	NA	NA
WP_164252004.1\|4074312_4075122_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_164252005.1\|4075328_4076981_-	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_164252006.1\|4077360_4078194_-	GlcNAc-PI de-N-acetylase	NA	NA	NA	NA
WP_164252007.1\|4080586_4080832_-	hypothetical protein	NA	NA	NA	NA
WP_164252008.1\|4082444_4082603_+	hypothetical protein	NA	NA	NA	NA
WP_147873493.1\|4083694_4084270_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.2e-76	70.4
WP_164252009.1\|4084275_4084797_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_164247504.1\|4084865_4085822_+\|transposase	transposase	NA	NA	NA	NA
WP_164252010.1\|4086452_4086899_+	hypothetical protein	NA	NA	NA	NA
WP_164254680.1\|4087084_4087702_+	hypothetical protein	NA	NA	NA	NA
WP_164254681.1\|4087907_4089161_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_164254683.1\|4089572_4090373_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.2e-33	42.1
WP_164247473.1\|4090479_4090788_-\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	1.2e-18	54.4

DBSCAN-SWA_5

6520617 : 6541178

Cyanophage(33.33%)

transposase,integrase

attL 6522266:6522282|attR 6542690:6542706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164247504.1\|6520617_6521574_-\|transposase	transposase	NA	NA	NA	NA
WP_164253525.1\|6521667_6522438_-\|transposase	transposase	NA	NA	NA	NA
6522266:6522282	attL	NA	NA	NA	NA
WP_164247504.1\|6522521_6523478_+\|transposase	transposase	NA	NA	NA	NA
WP_164253526.1\|6523585_6525124_+	FAD-dependent oxidoreductase	A0A1D7SEI2	Cyanophage	5.6e-69	33.7
WP_164253527.1\|6525157_6525673_+	flavin reductase family protein	NA	NA	NA	NA
WP_164253528.1\|6525667_6527815_-	hypothetical protein	NA	NA	NA	NA
WP_164253529.1\|6528432_6529266_+	hypothetical protein	NA	NA	NA	NA
WP_164253530.1\|6529698_6530286_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_164253531.1\|6530553_6530664_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_164253532.1\|6531527_6531749_+	hypothetical protein	NA	NA	NA	NA
WP_164253533.1\|6531745_6532366_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164253534.1\|6532493_6534029_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_164253535.1\|6534028_6534820_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.0e-25	31.8
WP_164253536.1\|6535492_6536203_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_164253537.1\|6536256_6536808_-	N-acetyltransferase	NA	NA	NA	NA
WP_164253538.1\|6536818_6538075_-	Tat pathway signal protein	NA	NA	NA	NA
WP_164247504.1\|6538190_6539147_-\|transposase	transposase	NA	NA	NA	NA
WP_164253539.1\|6539554_6539851_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164255135.1\|6540047_6541178_+\|integrase	tyrosine-type recombinase/integrase	A0A2I7SC08	Paenibacillus_phage	1.5e-18	24.9
6542690:6542706	attR	NA	NA	NA	NA

DBSCAN-SWA_6

7676076 : 7737113

uncultured_Caudovirales_phage(33.33%)

protease,integrase

attL 7707918:7707935|attR 7741321:7741338

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164254159.1\|7676076_7678488_-\|integrase	phage integrase family protein	NA	NA	NA	NA
WP_164255277.1\|7678484_7678832_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164254160.1\|7678846_7679950_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.5e-07	27.3
WP_164254161.1\|7680015_7681149_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_164254162.1\|7681218_7681449_-	hypothetical protein	NA	NA	NA	NA
WP_147877941.1\|7682773_7683187_+	roadblock/LC7 domain-containing protein	NA	NA	NA	NA
WP_164254163.1\|7683283_7684351_+	hypothetical protein	NA	NA	NA	NA
WP_164254164.1\|7684381_7685368_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_164254165.1\|7685565_7686360_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_164254166.1\|7686370_7686901_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_164254167.1\|7687430_7688327_+	chitinase	A0A2H4JHX4	uncultured_Caudovirales_phage	5.5e-08	35.1
WP_164255278.1\|7688621_7689011_+	tyrosinase	NA	NA	NA	NA
WP_164254168.1\|7689033_7689900_+	tyrosinase family protein	NA	NA	NA	NA
WP_147877932.1\|7690056_7690329_-	DUF320 domain-containing protein	NA	NA	NA	NA
WP_164254169.1\|7690549_7692046_+	MFS transporter	NA	NA	NA	NA
WP_164255279.1\|7692977_7694579_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_164255280.1\|7694872_7698304_+	multidrug transporter	NA	NA	NA	NA
WP_164254170.1\|7698373_7698796_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_164254171.1\|7699064_7700441_-	cytochrome P450	M1PWN0	Moumouvirus	1.5e-12	26.1
WP_164254172.1\|7700689_7702294_-	MFS transporter	NA	NA	NA	NA
WP_164254173.1\|7702304_7703036_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_164254174.1\|7703476_7704622_+	acyl-CoA desaturase	A6N231	Microbacterium_phage	1.9e-74	43.9
WP_164254175.1\|7705292_7705934_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_147877922.1\|7706306_7707014_-	FCD domain-containing protein	NA	NA	NA	NA
WP_164254176.1\|7707184_7708462_+	SLC13 family permease	NA	NA	NA	NA
7707918:7707935	attL	NA	NA	NA	NA
WP_164254177.1\|7708517_7709990_+	AMP-binding protein	NA	NA	NA	NA
WP_164254178.1\|7709994_7711365_+	acetyl-CoA carboxylase	NA	NA	NA	NA
WP_164254179.1\|7711428_7712451_+	DUF2510 domain-containing protein	NA	NA	NA	NA
WP_164254180.1\|7712999_7714490_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_164254181.1\|7714535_7714934_-	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_164254182.1\|7715580_7716042_+	hypothetical protein	NA	NA	NA	NA
WP_164254183.1\|7716125_7716341_-	hypothetical protein	NA	NA	NA	NA
WP_164254184.1\|7716337_7717051_-	hypothetical protein	NA	NA	NA	NA
WP_147877913.1\|7717209_7717530_+	hypothetical protein	NA	NA	NA	NA
WP_164254185.1\|7717564_7718494_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_164254186.1\|7718884_7719295_+	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_164254187.1\|7719338_7720262_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164254188.1\|7720325_7721150_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_147877297.1\|7721210_7721933_-	chitinase	A0A2H4JHX4	uncultured_Caudovirales_phage	3.9e-12	32.0
WP_164254189.1\|7722150_7722669_-	chitin-binding protein	NA	NA	NA	NA
WP_164254190.1\|7723214_7724303_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_164254191.1\|7724296_7725595_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_147877293.1\|7725609_7726536_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_164254192.1\|7726535_7727474_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_147877313.1\|7727555_7728572_+	glycosidase	NA	NA	NA	NA
WP_164254193.1\|7728568_7730212_+	glycoside hydrolase family 13 protein	NA	NA	NA	NA
WP_164254194.1\|7730246_7731113_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_164254546.1\|7731264_7731876_+	amino acid transporter	NA	NA	NA	NA
WP_164251160.1\|7731896_7733393_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_164251158.1\|7733389_7733725_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_164254545.1\|7733724_7734762_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_164254195.1\|7735201_7736275_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_164254196.1\|7736390_7737113_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A249XSS8	Mycobacterium_phage	1.6e-21	47.9
7741321:7741338	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048397

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection