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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP019711 Absiella sp. 9CBEGH2 1 crisprs csa3,PD-DExK,DinG,WYL,DEDDh,cas3,cas2,cas1,cas9 0 7 5 0

Results visualization

1. NZ_AP019711
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019711_1 1807085-1807978 TypeII NA
13 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP019711_1 1.5|1807385|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807385-1807414 30 NZ_KU510528 Staphylococcus aureus subsp. aureus strain M13/0401 plasmid pSAM13-0401 clone ST22, complete sequence 23110-23139 7 0.767
NZ_AP019711_1 1.10|1807715|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807715-1807744 30 MH617587 Microviridae sp. isolate ctii141, complete genome 802-831 7 0.767
NZ_AP019711_1 1.11|1807781|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807781-1807810 30 MK448500 Streptococcus satellite phage Javan442, complete genome 8001-8030 7 0.767
NZ_AP019711_1 1.11|1807781|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807781-1807810 30 MK448499 Streptococcus satellite phage Javan441, complete genome 8001-8030 7 0.767
NZ_AP019711_1 1.3|1807253|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807253-1807282 30 NZ_CP017242 Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence 141254-141283 8 0.733
NZ_AP019711_1 1.12|1807847|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807847-1807876 30 NZ_CP032091 Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence 765835-765864 8 0.733
NZ_AP019711_1 1.3|1807253|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807253-1807282 30 MH552475 Siphoviridae sp. isolate ctbe4, complete genome 40761-40790 9 0.7
NZ_AP019711_1 1.8|1807583|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807583-1807612 30 MN480763 Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence 145258-145287 9 0.7
NZ_AP019711_1 1.9|1807649|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT 1807649-1807678 30 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 744541-744570 9 0.7

1. spacer 1.5|1807385|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU510528 (Staphylococcus aureus subsp. aureus strain M13/0401 plasmid pSAM13-0401 clone ST22, complete sequence) position: , mismatch: 7, identity: 0.767

tgacttgctcgtgcctgttgagcacgtaaa	CRISPR spacer
cgtagcgctcgtgactgttgagcaagtaaa	Protospacer
.*   .******* ********** *****

2. spacer 1.10|1807715|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to MH617587 (Microviridae sp. isolate ctii141, complete genome) position: , mismatch: 7, identity: 0.767

tagctgtagcttgtttgctttgctcatgcg	CRISPR spacer
ttcctgtagcttgtttgctttgcgcagttc	Protospacer
*  ******************** **  . 

3. spacer 1.11|1807781|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to MK448500 (Streptococcus satellite phage Javan442, complete genome) position: , mismatch: 7, identity: 0.767

cttgattttatagctttcaagaggttttgc	CRISPR spacer
gttctttttaaagctttcaagagcttttat	Protospacer
 **  ***** ************ ****..

4. spacer 1.11|1807781|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to MK448499 (Streptococcus satellite phage Javan441, complete genome) position: , mismatch: 7, identity: 0.767

cttgattttatagctttcaagaggttttgc	CRISPR spacer
gttctttttaaagctttcaagagcttttat	Protospacer
 **  ***** ************ ****..

5. spacer 1.3|1807253|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 8, identity: 0.733

tgtgtgtgcattatgtccgccatgtacatt	CRISPR spacer
agttccattattatgtccgcgatgtacatt	Protospacer
 ** .   .*********** *********

6. spacer 1.12|1807847|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tggtctgtgatgtgccttttatcgacaact	CRISPR spacer
ttgaaatagatgtgccttttaacgacaaca	Protospacer
* *     ************* ******* 

7. spacer 1.3|1807253|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to MH552475 (Siphoviridae sp. isolate ctbe4, complete genome) position: , mismatch: 9, identity: 0.7

tgtgtgtgcattatgtccgccatgtacatt	CRISPR spacer
ggtgtgtggattatgtccgccactaccgcc	Protospacer
 ******* *************.   *...

8. spacer 1.8|1807583|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to MN480763 (Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence) position: , mismatch: 9, identity: 0.7

gcgtaagacatcaataatcaacaattatac	CRISPR spacer
gtcagtgaaatcaataatcaacaattaatt	Protospacer
*.  . ** ******************  .

9. spacer 1.9|1807649|30|NZ_AP019711|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggaaagcggacaatcgaataccgcataatt	CRISPR spacer
tctatgcggacaatcgtataccgcatgccg	Protospacer
   * *********** *********. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 197156 : 210642 16 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 467195 : 554894 89 Erysipelothrix_phage(34.88%) transposase,tail,protease,terminase,head,integrase,holin,tRNA,capsid,portal attL 532948:532964|attR 534299:534315
DBSCAN-SWA_3 777326 : 823867 56 Bacillus_phage(21.43%) transposase,tail,terminase,head,holin,capsid,portal NA
DBSCAN-SWA_4 1907175 : 1920092 12 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_5 2244374 : 2297170 46 Streptococcus_phage(42.86%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage