CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	0 crisprs	NA	0
NZ_CP046373	Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence	0 crisprs	NA	0
NZ_CP046371	Spiroplasma citri strain LB 319 chromosome, complete genome	0 crisprs	cas4	20

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105003 : 111116

Spiroplasma_virus(88.89%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|105003_105153_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071890530.1\|105152_105404_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	85.5
WP_071890535.1\|106353_106713_+	hypothetical protein	NA	NA	NA	NA
WP_071890537.1\|106696_107146_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.0e-71	91.3
WP_071890543.1\|107299_107503_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071890544.1\|107502_108516_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_015979226.1\|108508_108913_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|108912_109149_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071890548.1\|109160_109772_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-90	84.2
WP_071890551.1\|109746_110028_-	lipoprotein	NA	NA	NA	NA
WP_071890554.1\|110144_111116_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.9e-28	30.9

DBSCAN-SWA_2

453404 : 461551

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937084.1\|453404_454274_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.0e-91	53.2
WP_071937085.1\|454273_454756_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.6e-22	37.1
WP_071937086.1\|454757_455543_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071937087.1\|455568_456879_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.0e-107	49.2
WP_071937088.1\|456979_457741_+	segregation/condensation protein A	NA	NA	NA	NA
WP_004028618.1\|457746_458295_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.7e-15	31.6
WP_164107301.1\|458294_459032_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_004028620.1\|459047_459656_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	8.9e-18	35.1
WP_071937090.1\|459758_460952_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-29	34.1
WP_071937091.1\|460987_461551_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.5e-22	38.6

DBSCAN-SWA_3

509341 : 517266

Spiroplasma_virus(88.89%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015979229.1\|509341_509491_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|509490_509742_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|510177_510417_+	hypothetical protein	NA	NA	NA	NA
WP_015979232.1\|510713_511055_+	hypothetical protein	NA	NA	NA	NA
WP_084566904.1\|511047_511488_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	6.8e-68	89.7
WP_071890543.1\|511640_511844_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071890544.1\|511843_512857_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_015979226.1\|512849_513254_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|513253_513490_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_164107304.1\|513501_514140_+	DUF3688 domain-containing protein	A8RHK2	Spiroplasma_virus	2.0e-92	85.1
WP_071936912.1\|516291_517266_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5

DBSCAN-SWA_4

606702 : 645606

Clostridium_phage(22.22%)

terminase,tail,portal,capsid,head,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164107474.1\|606702_607386_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_164107320.1\|607363_607681_-	hypothetical protein	NA	NA	NA	NA
WP_164107323.1\|607687_608203_-	hypothetical protein	NA	NA	NA	NA
WP_164107325.1\|608253_608460_-	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|609205_609604_-	hypothetical protein	NA	NA	NA	NA
WP_071937189.1\|609614_609941_-	hypothetical protein	NA	NA	NA	NA
WP_071937190.1\|609930_610299_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_164107327.1\|610322_611864_-\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	2.3e-06	31.9
WP_071937192.1\|612074_613277_-\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_071937193.1\|613448_613940_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937194.1\|613920_614313_+	hypothetical protein	NA	NA	NA	NA
WP_071937195.1\|614412_616116_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	7.4e-78	34.1
WP_071937196.1\|616118_616622_-	hypothetical protein	NA	NA	NA	NA
WP_071937197.1\|616890_619347_-	N-6 DNA methylase	P95687	Staphylococcus_phage	1.8e-40	28.4
WP_071937198.1\|619564_619918_-	hypothetical protein	NA	NA	NA	NA
WP_071937199.1\|619922_620777_-	hypothetical protein	A0A0A7RW37	Clostridium_phage	1.1e-40	41.2
WP_071937200.1\|620896_621139_-	hypothetical protein	NA	NA	NA	NA
WP_053391425.1\|621129_621564_-	single-stranded DNA-binding protein	B8R683	Lactobacillus_phage	8.6e-15	39.8
WP_164028408.1\|621654_622224_-	hypothetical protein	NA	NA	NA	NA
WP_053391427.1\|622383_623061_-	hypothetical protein	NA	NA	NA	NA
WP_071937202.1\|623060_623471_-	hypothetical protein	NA	NA	NA	NA
WP_071937203.1\|623470_623677_-	hypothetical protein	NA	NA	NA	NA
WP_071937204.1\|623676_624060_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_157092848.1\|624061_624199_-	hypothetical protein	NA	NA	NA	NA
WP_053391429.1\|624200_624458_-	hypothetical protein	NA	NA	NA	NA
WP_071937205.1\|624459_624639_-	hypothetical protein	NA	NA	NA	NA
WP_071891731.1\|624652_624832_-	hypothetical protein	NA	NA	NA	NA
WP_071937206.1\|624967_625507_-	hypothetical protein	NA	NA	NA	NA
WP_071937207.1\|625475_625709_-	hypothetical protein	NA	NA	NA	NA
WP_147077617.1\|625727_626471_-	hypothetical protein	E1AC06	Pseudoalteromonas_phage	9.2e-33	38.6
WP_071937151.1\|627532_627778_-	hypothetical protein	NA	NA	NA	NA
WP_071937209.1\|628254_628725_-	hypothetical protein	NA	NA	NA	NA
WP_071937210.1\|628928_630173_+	ABC transporter permease	NA	NA	NA	NA
WP_071937211.1\|630189_631179_+	ABC transporter permease	NA	NA	NA	NA
WP_071937212.1\|631208_632912_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.6e-09	44.0
WP_071937213.1\|632913_635148_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-09	39.4
WP_147076907.1\|635150_637325_+	oligopeptide ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA
WP_071937215.1\|638072_638630_+	elongation factor P	NA	NA	NA	NA
WP_071937216.1\|638661_638967_+	hypothetical protein	NA	NA	NA	NA
WP_071937217.1\|639110_639599_-	hypothetical protein	NA	NA	NA	NA
WP_147076910.1\|639712_640273_-	hypothetical protein	NA	NA	NA	NA
WP_157092849.1\|640622_642368_+	APC family permease	NA	NA	NA	NA
WP_071937219.1\|643208_643679_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_071937221.1\|645339_645606_+\|bacteriocin	bacteriocin leader domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_5

811549 : 815144

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|811549_811786_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|811785_812163_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937328.1\|812155_813169_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	7.5e-171	90.2
WP_071937329.1\|813362_813566_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	1.2e-27	92.5
WP_071937330.1\|813718_814168_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.5e-70	89.9
WP_071937332.1\|814892_815144_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	86.7

DBSCAN-SWA_6

824552 : 836157

Spiroplasma_virus(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937341.1\|824552_826517_+	transketolase	A0A2K9L6P9	Tupanvirus	4.4e-18	32.0
WP_155522108.1\|826605_826755_+	hypothetical protein	NA	NA	NA	NA
WP_071937342.1\|826858_827008_+	hypothetical protein	A8RHI0	Spiroplasma_virus	1.1e-09	71.4
WP_071937343.1\|827007_827259_+	hypothetical protein	A8RHI2	Spiroplasma_virus	5.4e-30	86.7
WP_164107360.1\|828081_828417_+	hypothetical protein	A8RHI5	Spiroplasma_virus	1.4e-12	52.5
WP_155522075.1\|829630_829780_+	hypothetical protein	NA	NA	NA	NA
WP_015979229.1\|829889_830039_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|830038_830290_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|830713_830953_+	hypothetical protein	NA	NA	NA	NA
WP_071890535.1\|831218_831578_+	hypothetical protein	NA	NA	NA	NA
WP_071937346.1\|831561_832011_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890543.1\|832163_832367_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|832366_833380_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|833372_833750_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|833749_833986_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937348.1\|833997_836157_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.3

DBSCAN-SWA_7

968088 : 978266

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084566885.1\|968088_970026_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.6e-115	41.6
WP_071937452.1\|970150_970954_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_155522119.1\|971703_971853_+	hypothetical protein	NA	NA	NA	NA
WP_071937130.1\|971957_972107_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.7e-11	75.5
WP_071937454.1\|972106_972358_+	hypothetical protein	A8RHI2	Spiroplasma_virus	4.4e-32	88.0
WP_071890535.1\|973312_973672_+	hypothetical protein	NA	NA	NA	NA
WP_071937455.1\|973655_974105_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	5.7e-70	89.9
WP_071890543.1\|974257_974461_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|974460_975474_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|975466_975844_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|975843_976080_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937456.1\|976091_978266_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.5

DBSCAN-SWA_8

987835 : 999183

Spiroplasma_virus(72.73%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155522121.1\|987835_987973_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.4e-16	95.6
WP_071937463.1\|988251_988488_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_071937464.1\|988499_988697_+	hypothetical protein	NA	NA	NA	NA
WP_071937465.1\|989460_989676_-	hypothetical protein	NA	NA	NA	NA
WP_071937466.1\|990220_990370_+	hypothetical protein	A8RHI0	Spiroplasma_virus	6.1e-13	79.6
WP_071937359.1\|990369_990621_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	89.2
WP_084566886.1\|991703_992144_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	4.2e-70	88.4
WP_071937469.1\|992296_992500_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_015979226.1\|993507_993912_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937470.1\|993911_994148_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_162302564.1\|994209_994362_+	DUF3688 family protein	NA	NA	NA	NA
WP_164106007.1\|994448_994982_+	hypothetical protein	Q9QTG8	Spiroplasma_phage	5.5e-96	95.5
WP_071937472.1\|995335_995575_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	3.1e-27	88.5
WP_071937475.1\|997449_999183_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.8e-05	56.4

DBSCAN-SWA_9

1009055 : 1017725

Spiroplasma_virus(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937484.1\|1009055_1009292_-	hypothetical protein	A8RHK0	Spiroplasma_virus	2.4e-32	97.4
WP_071937327.1\|1009291_1009669_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071890543.1\|1010675_1010879_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937485.1\|1011017_1011389_-	hypothetical protein	NA	NA	NA	NA
WP_084566887.1\|1011413_1011827_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.4e-62	90.4
WP_071937487.1\|1011819_1012155_-	hypothetical protein	NA	NA	NA	NA
WP_071937488.1\|1012147_1012507_-	hypothetical protein	NA	NA	NA	NA
WP_071938058.1\|1012870_1013062_-	hypothetical protein	A8RHI2	Spiroplasma_virus	3.7e-23	88.9
WP_071937489.1\|1013134_1013272_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.4e-09	73.3
WP_071937491.1\|1013596_1013890_-	hypothetical protein	A0A2H4JCY8	uncultured_Caudovirales_phage	7.3e-10	44.6
WP_157092864.1\|1014009_1014240_-	hypothetical protein	NA	NA	NA	NA
WP_071937493.1\|1014373_1014973_-	hypothetical protein	A0A290GJW3	Caldibacillus_phage	4.8e-24	38.1
WP_071937494.1\|1014975_1015458_-	hypothetical protein	NA	NA	NA	NA
WP_071937495.1\|1015728_1016313_-	hypothetical protein	NA	NA	NA	NA
WP_155522124.1\|1016484_1016643_-	hypothetical protein	NA	NA	NA	NA
WP_071937496.1\|1016773_1017127_-	hypothetical protein	A0A0K2CYS9	Paenibacillus_phage	8.5e-05	31.1
WP_071937497.1\|1017131_1017725_-	hypothetical protein	A0A0A7RW37	Clostridium_phage	3.0e-26	44.4

DBSCAN-SWA_10

1129708 : 1137472

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937586.1\|1129708_1130143_+	single-stranded DNA-binding protein	A7DYE1	Streptococcus_phage	3.7e-10	37.6
WP_147077392.1\|1130145_1130376_+	hypothetical protein	NA	NA	NA	NA
WP_164028307.1\|1130495_1131350_+	recombinase RecT	A0A0B5D0I3	Listeria_phage	5.8e-39	43.7
WP_071937589.1\|1131354_1131708_+	hypothetical protein	A0A1B0YEC6	Lactobacillus_phage	1.5e-12	42.6
WP_155522132.1\|1131691_1131835_+	hypothetical protein	NA	NA	NA	NA
WP_071937570.1\|1131853_1132033_+	hypothetical protein	NA	NA	NA	NA
WP_164107412.1\|1132400_1133723_+	N-6 DNA methylase	P95687	Staphylococcus_phage	9.5e-49	35.7
WP_164107414.1\|1133728_1134781_+	N-6 DNA methylase	NA	NA	NA	NA
WP_071937568.1\|1135260_1135764_+	hypothetical protein	NA	NA	NA	NA
WP_071937591.1\|1135766_1136159_+	hypothetical protein	A0A290GJW3	Caldibacillus_phage	2.5e-13	39.8
WP_157092869.1\|1136239_1137472_+	hypothetical protein	B5WZP1	Staphylococcus_phage	3.8e-52	33.2

DBSCAN-SWA_11

1154931 : 1166866

Spiroplasma_virus(93.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937609.1\|1154931_1155168_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.0e-30	96.2
WP_071937610.1\|1155167_1155563_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	8.3e-41	96.6
WP_071937611.1\|1156566_1156770_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.4e-28	92.5
WP_164107418.1\|1156922_1157393_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.6e-67	84.6
WP_155522119.1\|1157843_1157993_+	hypothetical protein	NA	NA	NA	NA
WP_071937614.1\|1158097_1158247_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.3e-09	69.4
WP_071937131.1\|1158246_1158498_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071937615.1\|1159436_1159718_+	hypothetical protein	A8RHI5	Spiroplasma_virus	2.4e-10	61.3
WP_071937616.1\|1159755_1160205_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	7.9e-72	91.3
WP_071937469.1\|1160357_1160561_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937617.1\|1161568_1161910_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	97.7
WP_015967964.1\|1161909_1162146_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937618.1\|1162157_1164284_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.4
WP_071937619.1\|1164298_1164700_-	lipoprotein	NA	NA	NA	NA
WP_015979228.1\|1164814_1165783_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.0e-15	27.4
WP_071937620.1\|1166465_1166717_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_071890527.1\|1166716_1166866_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4

DBSCAN-SWA_12

1229381 : 1238956

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|1229381_1229531_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071937131.1\|1229530_1229782_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_015979231.1\|1230204_1230444_+	hypothetical protein	NA	NA	NA	NA
WP_071937671.1\|1230852_1231212_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|1231204_1231645_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015979235.1\|1231797_1232001_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_071937672.1\|1233004_1233346_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	96.6
WP_071937673.1\|1233345_1233582_+	hypothetical protein	A8RHK0	Spiroplasma_virus	3.2e-32	96.2
WP_071937674.1\|1233593_1235798_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	85.0
WP_071937675.1\|1235824_1236292_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.9e-12	41.4
WP_071937676.1\|1237803_1238163_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_071937677.1\|1238186_1238381_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_004028189.1\|1238425_1238956_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	9.5e-08	28.5

DBSCAN-SWA_13

1243367 : 1264546

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937684.1\|1243367_1243658_-	PTS lactose/cellobiose transporter subunit IIA	Q9QTH0	Spiroplasma_phage	3.4e-07	96.3
WP_071937685.1\|1244056_1244239_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	3.7e-20	85.0
WP_071937686.1\|1244578_1244818_-	hypothetical protein	Q3ZVE8	Spiroplasma_phage	7.2e-32	98.7
WP_071937687.1\|1244817_1245108_-	hypothetical protein	Q3ZVE9	Spiroplasma_phage	4.5e-44	95.8
WP_071937688.1\|1246118_1246316_-	hypothetical protein	NA	NA	NA	NA
WP_147077749.1\|1246290_1246479_-	hypothetical protein	Q3ZVF1	Spiroplasma_phage	9.4e-19	94.2
WP_147077751.1\|1246543_1246735_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	5.6e-27	98.4
WP_155522136.1\|1246821_1246995_-	hypothetical protein	Q3ZVF3	Spiroplasma_phage	1.7e-19	100.0
WP_155522137.1\|1246996_1247140_-	hypothetical protein	Q3ZVF4	Spiroplasma_phage	6.9e-14	97.9
WP_071937689.1\|1247179_1247449_-	hypothetical protein	Q3ZVF5	Spiroplasma_phage	7.3e-41	94.4
WP_071937690.1\|1247777_1248092_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.3e-46	91.3
WP_071937691.1\|1248528_1249032_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.6e-68	80.9
WP_071937692.1\|1249047_1249470_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.6e-61	83.0
WP_071937693.1\|1249609_1249888_-	hypothetical protein	NA	NA	NA	NA
WP_071937694.1\|1250012_1250855_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	3.3e-148	92.8
WP_164107422.1\|1250994_1251591_-	hypothetical protein	NA	NA	NA	NA
WP_071937738.1\|1251778_1253182_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	5.4e-135	66.5
WP_071937737.1\|1253194_1253431_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.8e-30	93.5
WP_164107424.1\|1253785_1254796_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	1.0e-159	89.6
WP_164107426.1\|1254800_1255010_-	DUF2649 domain-containing protein	Q9QTG9	Spiroplasma_phage	9.5e-12	97.1
WP_071937700.1\|1255230_1255434_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937701.1\|1255566_1255758_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_071937702.1\|1255757_1255985_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.2e-29	91.7
WP_164107428.1\|1256229_1256580_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.3e-15	39.0
WP_164107430.1\|1256969_1257980_-	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	1.4e-140	74.1
WP_164107432.1\|1258144_1258558_-	hypothetical protein	NA	NA	NA	NA
WP_164107434.1\|1258633_1259107_-	hypothetical protein	NA	NA	NA	NA
WP_164107436.1\|1259289_1260693_-	DUF3688 domain-containing protein	Q9QTH9	Spiroplasma_phage	5.1e-133	65.9
WP_105298387.1\|1260705_1260942_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	93.5
WP_164107439.1\|1261296_1262307_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	5.7e-171	95.8
WP_164107441.1\|1262311_1262521_-	DUF2649 domain-containing protein	Q9QTG9	Spiroplasma_phage	1.8e-10	71.0
WP_071937700.1\|1262741_1262945_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_164107443.1\|1263076_1263259_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	1.8e-19	83.3
WP_164107445.1\|1263258_1263486_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	2.7e-28	88.9
WP_164107447.1\|1263723_1264221_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	5.7e-39	52.1
WP_164107449.1\|1264222_1264546_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.2e-47	90.7

DBSCAN-SWA_14

1267898 : 1279352

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164028338.1\|1267898_1269302_-	DUF3688 domain-containing protein	Q9QTH9	Spiroplasma_phage	9.2e-135	66.5
WP_164028340.1\|1269315_1269552_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	6.7e-30	90.9
WP_164058380.1\|1269906_1270917_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	3.1e-164	91.7
WP_071937699.1\|1270921_1271131_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_071937700.1\|1271351_1271555_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937701.1\|1271686_1271878_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_164028342.1\|1271877_1272105_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	2.7e-28	91.7
WP_164028344.1\|1272303_1272654_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.6e-17	41.5
WP_164028346.1\|1274213_1274738_-	hypothetical protein	NA	NA	NA	NA
WP_157092892.1\|1274944_1276348_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	2.4e-135	65.9
WP_071937706.1\|1277968_1278178_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	1.6e-11	97.1
WP_071937700.1\|1278398_1278602_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937707.1\|1279001_1279352_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.4e-15	39.0

DBSCAN-SWA_15

1285138 : 1291153

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937713.1\|1285138_1286191_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	4.2e-108	59.8
WP_157092874.1\|1286425_1287829_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.9e-135	66.8
WP_071937697.1\|1287842_1288079_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	92.2
WP_071937715.1\|1288433_1289444_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	6.8e-172	95.8
WP_071937716.1\|1289448_1289658_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.8e-11	95.7
WP_071937717.1\|1290230_1290413_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.2e-20	86.7
WP_071937718.1\|1290412_1290640_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.8e-30	94.4
WP_071937719.1\|1290838_1291153_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.2e-50	96.2

DBSCAN-SWA_16

1294405 : 1309142

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937723.1\|1294405_1294615_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_071937724.1\|1295985_1296222_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.5e-29	92.2
WP_164107456.1\|1296234_1297638_+	DUF3688 domain-containing protein	Q9QTH9	Spiroplasma_phage	4.7e-123	62.0
WP_164058378.1\|1297963_1298971_+	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	5.9e-168	87.3
WP_164028332.1\|1299699_1300023_+	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.0e-44	84.1
WP_164028330.1\|1300024_1300522_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.5e-34	47.6
WP_164028328.1\|1300808_1301036_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	1.4e-29	93.1
WP_071937701.1\|1301035_1301227_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_071937700.1\|1301359_1301563_+	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937699.1\|1301783_1301993_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_164028326.1\|1301997_1303008_+	hypothetical protein	Q9QTG8	Spiroplasma_phage	3.5e-168	93.8
WP_071937737.1\|1303362_1303599_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.8e-30	93.5
WP_071937738.1\|1303611_1305015_+	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	5.4e-135	66.5
WP_071937752.1\|1305244_1305784_+	hypothetical protein	NA	NA	NA	NA
WP_071937753.1\|1306016_1306370_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.2e-43	72.6
WP_071937754.1\|1306376_1307000_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	7.8e-86	77.2
WP_071937755.1\|1307390_1307609_+	hypothetical protein	NA	NA	NA	NA
WP_071937756.1\|1307580_1307769_+	hypothetical protein	NA	NA	NA	NA
WP_071937757.1\|1307967_1308195_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	5.4e-29	93.1
WP_071937758.1\|1308194_1308377_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	4.8e-20	85.0
WP_071937759.1\|1308508_1308712_+	hypothetical protein	NA	NA	NA	NA
WP_071937760.1\|1308932_1309142_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	8.0e-11	97.1

DBSCAN-SWA_17

1418603 : 1422423

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|1418603_1418840_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1418839_1419217_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937852.1\|1419209_1420223_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	6.4e-170	89.6
WP_071890543.1\|1420222_1420426_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937853.1\|1420578_1421022_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.7e-63	83.9
WP_071937854.1\|1421005_1421365_-	hypothetical protein	NA	NA	NA	NA
WP_071937855.1\|1422022_1422274_-	hypothetical protein	A8RHI2	Spiroplasma_virus	1.2e-32	89.2
WP_071937856.1\|1422273_1422423_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.3e-10	73.5

DBSCAN-SWA_18

1582836 : 1592008

Spiroplasma_virus(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937945.1\|1582836_1583289_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-10	41.1
WP_071937946.1\|1585455_1585692_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.9e-32	97.4
WP_071937947.1\|1585691_1586069_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.8e-38	97.6
WP_071937948.1\|1587072_1587276_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	1.3e-29	95.5
WP_084566901.1\|1587428_1587869_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.3e-68	91.1
WP_071937951.1\|1588215_1588455_-	hypothetical protein	NA	NA	NA	NA
WP_015967969.1\|1588933_1589083_-	hypothetical protein	A8RHI0	Spiroplasma_virus	1.2e-13	81.6
WP_071937952.1\|1590583_1592008_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	1.7e-96	39.8

DBSCAN-SWA_19

1620256 : 1628105

Spiroplasma_virus(90.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071936912.1\|1620256_1621231_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5
WP_147077316.1\|1621345_1621813_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	3.3e-12	43.7
WP_071937973.1\|1621823_1623998_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.2
WP_015967964.1\|1624009_1624246_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1624245_1624623_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937347.1\|1624615_1625629_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071890543.1\|1625628_1625832_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937346.1\|1625984_1626434_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890535.1\|1626417_1626777_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1627704_1627956_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1627955_1628105_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4

DBSCAN-SWA_20

1687674 : 1698309

Spiroplasma_virus(90.91%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071936912.1\|1687674_1688649_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5
WP_071892025.1\|1689250_1691440_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.6
WP_015967964.1\|1691451_1691688_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_015979226.1\|1691687_1692092_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071890544.1\|1692084_1693098_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_071890543.1\|1693097_1693301_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_084566904.1\|1693453_1693894_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	6.8e-68	89.7
WP_015979232.1\|1693886_1694228_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|1694524_1694764_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1695199_1695451_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1695450_1695600_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_155522075.1\|1695709_1695859_-	hypothetical protein	NA	NA	NA	NA
WP_071938017.1\|1696183_1696549_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_071938018.1\|1696604_1697096_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_147077704.1\|1697909_1698089_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.2e-11	73.3
WP_071938019.1\|1698057_1698309_+	hypothetical protein	A8RHI2	Spiroplasma_virus	1.6e-29	85.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection