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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP048603 Escherichia coli strain ChlosBP-23-1 chromosome, complete genome 6 crisprs PD-DExK,RT,csa3,WYL,cas3,DEDDh,DinG,cas14j 0 4 6 0

Results visualization

1. NZ_CP048603
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_1 1575647-1575760 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_2 2893028-2893119 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_3 3014762-3014912 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_4 3547660-3547795 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_5 4067306-4067445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP048603_6 4542629-4542760 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP048603_2 2.1|2893054|40|NZ_CP048603|CRISPRCasFinder 2893054-2893093 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31251-31302 3 0.942
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 271-322 3 0.942
NZ_CP048603_3 3.1|3014790|32|NZ_CP048603|CRISPRCasFinder 3014790-3014821 32 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 83332-83363 8 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4114-4165 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208981-209032 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4113-4164 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219475-219526 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4113-4164 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210309-210360 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4113-4164 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191264-191315 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12112-12163 9 0.827
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14239-14290 10 0.808
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12113-12164 11 0.788
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 272-323 11 0.788
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31252-31303 11 0.788
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7392-7443 11 0.788
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84216-84267 11 0.788
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87120-87171 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229333-229384 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 43-94 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239827-239878 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 42-93 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18333-18384 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230739-230790 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 42-93 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211709-211760 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 42-93 12 0.769
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 153-204 12 0.769
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208982-209033 13 0.75
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219476-219527 13 0.75
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210310-210361 13 0.75
NZ_CP048603_5 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder 4067350-4067401 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191265-191316 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30160-30211 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229232-229283 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229434-229485 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239726-239777 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239928-239979 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230638-230689 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230840-230891 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211608-211659 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211810-211861 13 0.75
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3372-3423 14 0.731
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3371-3422 14 0.731
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15001-15052 14 0.731
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3371-3422 14 0.731
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3371-3422 14 0.731
NZ_CP048603_6 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder 4542669-4542720 52 NZ_AP023209 Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence 71-122 14 0.731

1. spacer 2.1|2893054|40|NZ_CP048603|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 3, identity: 0.942

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
ggcaacggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	Protospacer
.*****.*.*******************************************

3. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 3, identity: 0.942

agcaacag-ttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-gtaacggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	Protospacer
 *.***.* ********************************************

4. spacer 3.1|3014790|32|NZ_CP048603|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgtcattattggcagacaggatccgcggcaa	CRISPR spacer
ttgtcaaaattggcagacaggatgccgtccag	Protospacer
******  *************** *    **.

5. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.827

agcaacag-ttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-gcacaagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***  ** ******** ************ ******************. ..

6. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.827

agcaacagt-tgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-aaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 . ******  ******************* ******************. . 

7. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.827

agcaacag-ttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-gcacaagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***  ** ******** ************ ******************. ..

8. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.827

agcaacagt-tgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-aaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 . ******  ******************* ******************. . 

9. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.827

agcaacag-ttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-gcacaagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***  ** ******** ************ ******************. ..

10. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.827

agcaacagt-tgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-aaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 . ******  ******************* ******************. . 

11. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.827

agcaacag-ttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-gcacaagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgc	Protospacer
 ***  ** ******** ************ ******************. ..

12. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.827

agcaacagt-tgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
-aaaacagtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctga	Protospacer
 . ******  ******************* ******************. . 

13. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.827

--agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
cgggcgac--tcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaa	Protospacer
  .**.**  *.******************* *****************..** 

14. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.808

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gaaacgatttgtaggcctgataagacgcgacagcggcgcatcaggcgctggt	Protospacer
.. *  * *************************** **********..**.*

15. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .***************.******* *****************  * 

16. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.***********.*************************  * 

17. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.788

--gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..***********.*************************  * 

18. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.788

-agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtgcagt-tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccgg	Protospacer
  ***..  ******** ************ ******************. . 

19. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.788

-agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtgcagt-tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccgg	Protospacer
  ***..  ******** ************ ******************. . 

20. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gattgattttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtg	Protospacer
... .   *********************.******************.*  

21. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgagaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  *. * ********************* .*****************. ..

22. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtacagatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
.   * * ******** ************ ******************....

23. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgagaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  *. * ********************* .*****************. ..

24. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtacagatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
.   * * ******** ************ ******************....

25. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtacagatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
.   * * ******** ************ ******************....

26. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgagaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  *. * ********************* .*****************. ..

27. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtacagatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
.   * * ******** ************ ******************....

28. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgagaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  *. * ********************* .*****************. ..

29. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gtacagatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcagc	Protospacer
.   * * ******** ************ ******************....

30. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 12, identity: 0.769

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
ctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaat	Protospacer
  *..   * ******************* **************** *..**

31. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

----gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ***********.******* *****************    

32. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

----gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ***********.******* *****************    

33. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

----gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ***********.******* *****************    

34. spacer 5.1|4067350|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

----gcactgaactcgtaggcctgatgagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ***********.******* *****************    

35. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
ggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcaga	Protospacer
.*..  ..******** ************ ******************... 

36. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

37. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

38. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

39. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

40. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

41. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

42. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

43. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gcgggaatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgc	Protospacer
.  .. * ********************* .*****************. ..

44. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.731

-----agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
tcgcgggc-----tcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
     .**     *.****** ************ *****************.. ..

45. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.731

-----agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
tcgcgggc-----tcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
     .**     *.****** ************ *****************.. ..

46. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 14, identity: 0.731

-----agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
tcgcgggc-----tcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgg	Protospacer
     .**     *.****** ************ *****************.. . 

47. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.731

-----agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
tcgcgggc-----tcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
     .**     *.****** ************ *****************.. ..

48. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.731

-----agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
tcgcgggc-----tcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgc	Protospacer
     .**     *.****** ************ *****************.. ..

49. spacer 6.1|4542669|52|NZ_CP048603|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

agcaacagttgtaggcctgataagacgcgacagcgtcgcatcaggcattgat	CRISPR spacer
gttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcggc	Protospacer
. . * . ..****** ************ ******************.*..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1085896 : 1093036 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_2 1700650 : 1710092 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_3 1813554 : 1819854 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_4 1916506 : 1945706 37 Escherichia_phage(32.0%) capsid,terminase,integrase,holin,tail attL 1905026:1905040|attR 1926436:1926450
DBSCAN-SWA_5 2676297 : 2702362 40 Enterobacteria_phage(64.71%) integrase,lysis attL 2687886:2687900|attR 2710624:2710638
DBSCAN-SWA_6 3013170 : 3068861 58 Salmonella_phage(44.83%) capsid,terminase,portal,integrase,protease,tRNA attL 3059123:3059137|attR 3069336:3069350
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage