CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP048619	Legionella pneumophila strain ERS1305867 plasmid unnamed, complete sequence	0 crisprs	WYL,DinG	0	0	0	0
NZ_CP048618	Legionella pneumophila strain ERS1305867 chromosome, complete genome	0 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

890220 : 950819

Pseudomonas_phage(18.18%)

protease,transposase,tRNA,coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014841190.1\|890220_891312_-\|coat	spore coat protein	NA	NA	NA	NA
WP_040185005.1\|891324_892044_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_061637123.1\|892359_893877_+	hypothetical protein	NA	NA	NA	NA
WP_061637124.1\|894109_895792_+	hypothetical protein	NA	NA	NA	NA
WP_010946509.1\|895757_896609_+	ABC transporter permease	NA	NA	NA	NA
WP_061637125.1\|896605_898030_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	4.2e-10	27.1
WP_061637126.1\|898035_899193_+	hypothetical protein	NA	NA	NA	NA
WP_061637127.1\|899314_900388_+	acyltransferase	NA	NA	NA	NA
WP_061637128.1\|900448_900925_-\|transposase	transposase	NA	NA	NA	NA
WP_061637129.1\|900893_901880_-\|transposase	transposase	NA	NA	NA	NA
WP_061637130.1\|902066_902960_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_061637131.1\|902953_903973_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_011945910.1\|904183_904891_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_011213314.1\|905449_905644_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	3.0e-12	70.6
WP_061637132.1\|905769_907752_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.5e-50	32.3
WP_011945912.1\|908042_909038_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010946521.1\|909041_909779_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_010946522.1\|909860_910814_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_061634432.1\|910806_912102_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_061637133.1\|912500_913037_+	hypothetical protein	NA	NA	NA	NA
WP_163620998.1\|913281_914448_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_061637134.1\|914444_915887_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	3.9e-72	40.5
WP_011945918.1\|915986_917363_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_011213317.1\|917567_918269_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_011945919.1\|918434_919682_+	MFS transporter	NA	NA	NA	NA
WP_011945920.1\|920067_920451_+	DUF3757 domain-containing protein	NA	NA	NA	NA
WP_014841207.1\|920728_922072_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_027264587.1\|922146_923796_-	L-aspartate oxidase	NA	NA	NA	NA
WP_061637135.1\|923792_925163_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.3e-112	49.4
WP_061637136.1\|925315_927019_+	sulfate permease	A0A2H4J153	uncultured_Caudovirales_phage	3.2e-41	26.3
WP_061637137.1\|927220_928924_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_014326783.1\|929152_930151_-	linear amide C-N hydrolase	NA	NA	NA	NA
WP_040184965.1\|930375_932763_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.4e-175	38.2
WP_010946542.1\|933004_934444_+	cation:proton antiporter	NA	NA	NA	NA
WP_027226257.1\|934440_935283_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_010946544.1\|935279_936371_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_010946545.1\|936345_937761_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_010946546.1\|937852_938170_+	competence protein ComEA	NA	NA	NA	NA
WP_011213320.1\|938365_939403_+	rod shape-determining protein	NA	NA	NA	NA
WP_010946548.1\|939380_940289_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_010946549.1\|940285_940765_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_061637143.1\|940700_941303_-	pseudouridine synthase	NA	NA	NA	NA
WP_072356110.1\|941563_942262_+	protein tyrosine phosphatase	NA	NA	NA	NA
WP_011213322.1\|942371_943628_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-14	74.1
WP_011215007.1\|944029_944365_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A218MMY6	uncultured_virus	5.8e-11	36.5
WP_011213323.1\|944396_946664_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.7e-167	42.1
WP_061637138.1\|946887_947667_+	glycosyltransferase family 2 protein	S5WBE2	Pseudomonas_phage	9.1e-07	30.1
WP_061637139.1\|947669_948920_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_061637140.1\|948920_949256_-	hypothetical protein	NA	NA	NA	NA
WP_062740881.1\|949414_949708_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_163620999.1\|949733_950819_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

963367 : 970206

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011945950.1\|963367_964144_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.9e-57	48.2
WP_014841226.1\|964136_965171_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.7e-75	47.3
WP_061465662.1\|965148_965727_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	8.6e-55	52.6
WP_010946572.1\|965760_966486_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_010946573.1\|966482_966992_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_010946574.1\|966972_967542_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011213328.1\|967538_968066_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|968079_969042_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_010946577.1\|969408_970206_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-21	33.8

DBSCAN-SWA_3

1376620 : 1382557

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027220755.1\|1376620_1377694_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.1e-30	28.6
WP_027268193.1\|1377678_1378293_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-22	38.4
WP_027224126.1\|1378289_1379498_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-98	48.5
WP_010946914.1\|1379505_1379973_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946915.1\|1380098_1381736_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_010946916.1\|1381732_1382557_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9

DBSCAN-SWA_4

2291354 : 2301477

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011214266.1\|2291354_2293043_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4
WP_061637193.1\|2293174_2294182_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011214268.1\|2294305_2295631_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.8e-47	31.2
WP_061637192.1\|2295649_2296798_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.9e-126	58.2
WP_011214270.1\|2297006_2298119_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.7e-51	35.4
WP_061637191.1\|2298214_2299354_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.2e-23	26.9
WP_011946925.1\|2299542_2301477_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage