CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022600	Mycolicibacterium tokaiense strain JCM 6373	6 crisprs	cas3,casR,DEDDh,csa3,WYL	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022600_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_1

348526-348606

Orphan

Consensus_repeat	Method
CTCAGCCCTTCGGACGCTGCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022600_1

>merge|NZ_AP022600|1|348526-348606|CRISPRCasFinder
CTCAGCCCTTCGGACGCTGCCCGTCCCTCTGGGTCAGCGCTCCTTCAGGGCTTCGTTCCTCAGCCCTTCGGACGCTGCCCG

>NZ_AP022600|1|1|348526-348606|CRISPRCasFinder
CTCAGCCCTTCGGACGCTGCCCG	TCCCTCTGGGTCAGCGCTCCTTCAGGGCTTCGTTC
CTCAGCCCTTCGGACGCTGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_115280007.1\|342781_343996_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_AP022600.1\|WP_115280004.1\|346216_346534_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274639
NZ_AP022600.1\|WP_115279997.1\|352807_353734_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_AP022600.1\|WP_115280006.1\|344162_345317_+\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_AP022600.1\|WP_115280003.1\|346617_347571_-\|glucosyl-3-phosphoglycerate-synthase	unknown	unknown	gnl\|CDD\|237556
NZ_AP022600.1\|WP_115280009.1\|340641_342279_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226089
NZ_AP022600.1\|WP_115279996.1\|353863_354469_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_AP022600.1\|WP_115280008.1\|342297_342780_+\|MSMEG_6728-family-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115279992.1\|358693_359647_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|274635
NZ_AP022600.1\|WP_115280002.1\|347567_348443_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_AP022600.1\|WP_115279994.1\|355444_357601_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_AP022600.1\|WP_115279993.1\|357578_358655_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237264
NZ_AP022600.1\|WP_115280000.1\|350439_351015_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_AP022600.1\|WP_115280005.1\|345657_346224_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NZ_AP022600.1\|WP_115279991.1\|359738_360083_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|380093
NZ_AP022600.1\|WP_068918317.1\|345366_345534_-\|DUF3117-domain-containing-protein	unknown	unknown	gnl\|CDD\|371461
NZ_AP022600.1\|WP_115279995.1\|354470_355448_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_AP022600.1\|WP_115279998.1\|352017_352857_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_AP022600.1\|WP_115280010.1\|339745_340645_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_AP022600.1\|WP_115279999.1\|351026_352046_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_115280007.1\|342781_343996_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_AP022600.1\|WP_115280004.1\|346216_346534_-\|DivIVA-domain-containing-protein	gnl\|CDD\|274639	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.	2.05438e-09
NZ_AP022600.1\|WP_115280006.1\|344162_345317_+\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_AP022600.1\|WP_115280003.1\|346617_347571_-\|glucosyl-3-phosphoglycerate-synthase	gnl\|CDD\|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	0
NZ_AP022600.1\|WP_115280009.1\|340641_342279_+\|ABC-transporter-permease	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	9.01347e-155
NZ_AP022600.1\|WP_115279996.1\|353863_354469_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.31708e-78
NZ_AP022600.1\|WP_115279992.1\|358693_359647_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|274635	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. This model represents a clade of the enzyme specific to Actinobacteria. Alternate name: tetrahydrodipicolinate N-succinyltransferase.	0
NZ_AP022600.1\|WP_115280002.1\|347567_348443_-\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.97404e-103
NZ_AP022600.1\|WP_115279994.1\|355444_357601_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	6.68734e-168
NZ_AP022600.1\|WP_115279993.1\|357578_358655_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_AP022600.1\|WP_115280000.1\|350439_351015_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	1.01143e-70
NZ_AP022600.1\|WP_115280005.1\|345657_346224_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	5.38864e-100
NZ_AP022600.1\|WP_115279991.1\|359738_360083_-\|VOC-family-protein	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	9.25628e-32
NZ_AP022600.1\|WP_068918317.1\|345366_345534_-\|DUF3117-domain-containing-protein	gnl\|CDD\|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.96644e-23
NZ_AP022600.1\|WP_115279995.1\|354470_355448_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.58963e-67
NZ_AP022600.1\|WP_115279998.1\|352017_352857_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.31869e-35
NZ_AP022600.1\|WP_115280010.1\|339745_340645_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.3034e-84
NZ_AP022600.1\|WP_115279997.1\|352807_353734_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	4.03585e-104

>NZ_AP022600.1|WP_115280002.1|347567_348443_-|dihydropteroate-synthase
MQAMFMGRPVAGDRALIMAIVNRTPDSFYDRGATFTDEAAKAAAHRAVADGADVIDIGGVKAGPGQVVDADEETARVVPFIEWLRATFPDQLISVDTWRASVAKLACAAGADLINDTWAGADPGLPEVAAEFGAGLVCSHTGGATPRTRPFRVNYGTSTRGVVDDVIAEVTAAAQDAVSKGVDRERILIDPTHDFGKNTYHGLTLLRHVKDLVKTGWPVLMALSNKDFVGETLGVGLTERLDGTLAATALAAADGARMFRVHEVGPTRRVLEMVASIQGVRPPTRTVRGLA
>NZ_AP022600.1|WP_115280003.1|346617_347571_-|glucosyl-3-phosphoglycerate-synthase
MTTTPDLAIENKMRTDTWLAENSWNRPNWSVAELEAAKKGRTISVVLPALNEEDTVASVIDTISPMLGGLVDELIVLDSGSTDDTEIRAIAAGAKVVSREQALPELPPNPGKGEVLWRSLAATTGDIVVFVDSDLIDPSPMFVPNLVGPLLTRDGIHLVKGFYRRPLKVSGSEDANGGGRVTQLVARPMLASLRPELSGVFQPLGGEYAGTRELLMSLPFAPAYGVEIGLLVDTYDKLGIDAIAQVNLGVRVHRNQPLTALGDMSRQVMATLLSRCGITDSGVGLTQFFADGDDFTPRVSKVSLEDRPPMNTLRPLR
>NZ_AP022600.1|WP_115280004.1|346216_346534_-|DivIVA-domain-containing-protein
MTMVLLYVVVLILIAIVLFGVASVVFGRGEQLPPLPRATTATVLPASGVTGADVEAVKFSQTLRGYKTSEVDWVLDRLAQELDSLRAEVDALRSQRVESAADARD
>NZ_AP022600.1|WP_115280005.1|345657_346224_-|DNA-3-methyladenine-glycosylase-I
MTDDGRIRCDWADQGPQLYRDYHDDEWGRPLRGTVALFERISLEAFQSGLSWLIILRKREGFRAAFAGFDVDTVAAYDDNDIERLMTDSTIVRNRAKIEATIGNARAVAALDVDLSDLLWSYAPARRPRPASMADVPAVTPESTAMARELKRRGFRFVGPTTAYALMQATGMVDDHIAACWVPAVEHR
>NZ_AP022600.1|WP_068918317.1|345366_345534_-|DUF3117-domain-containing-protein
MAAMKPRTGDGPLEATKEGRGIVMRVPLEGGGRLVVELTPDEAAALGDELKNVTG
>NZ_AP022600.1|WP_115280006.1|344162_345317_+|glycogen-synthase
MRVAMMTREYPPEVYGGAGVHVTELVSQLRTLCDVDVHCMGAPRDGAFVHQPDPQLAGANAALSMLSTDLVMTNAAAGADIAHSHTWYTGMAGHLAALLHGIPHVVTAHSLEPLRPWKAEQLGGGYRLSSWVEKTAMEAADAVIAVSSGMRRDVLSVYPALDPDKVHVVKNGIDTAVWYPDEQTSVLAELGVDPSRPVVAFVGRITRQKGVPHLVAAAHQFDPEIQLVLCAGAPDTPEIAAEVSGAVELLSQSRTGVFWVRDMLPVQKIRQILSAAAVFVCPSVYEPLGIVNLEAMACGTAVVASDVGGIPEVVADGTTGTLVHYDAADAPGFEAGIAAAVNALVADPERAARYGAAGRQRCIDEFSWARIAEQTLQIYRAVSA
>NZ_AP022600.1|WP_115280007.1|342781_343996_-|glucose-1-phosphate-adenylyltransferase
MREAPHVLGIVLAGGEGKRLYPLTADRAKPAVPFGGGYRLIDFVLSNLVNARFLRICVLTQYKSHSLDRHISQNWRLSGLAGEYITPVPAQQRLGPRWYTGSADAIYQSLNLIYDEDPDYIVIFGADHVYRMDPEQMLQAHIESGAGATVAGIRVPRAEASAFGCIDADDSGRIRGWIEKPSDPPGTPDDPEMTFASMGNYIFTTKVLIDAIRADADEDHSDHDMGGDIIPRLVADGMAAVYDFNNNEVPGATERDHGYWRDVGTLDAFYDAHMDLVSVHPIFNLYNKRWPIRGGSENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVVIDDGAIVEGSVIMPGARVGRGAVVRRAILDKNVVVGPGEMVGVDLDKDRERFAISSGGVVAVGKGVWI
>NZ_AP022600.1|WP_115280008.1|342297_342780_+|MSMEG_6728-family-protein
MQTFLPCPGFIDSAGLLDSKRLGKQRVETIQVLRALTVPGYGWRRHPAAAMWAGYEEALVRYGLDVCGVWTAHGRTDTCAATLLTDVRAGIGTTVVRTQDELAAAGEIPPWLGDPSLHHSHQSALVRKDPGHYRPLFPDVPDDLPNVWPASGRPRRVLLT
>NZ_AP022600.1|WP_115280009.1|340641_342279_+|ABC-transporter-permease
MSTAVASHPAHRAPSLSTSEFTGTTHLLRLYLRRDRLVAPLWILLLSVPLASVYIGSVDAVYPTAADRAAFAASIMASPAQRALYGGIYNDSLGAVGIWKAGIFHLLIAVAVIMTVIRHTRADEEVGRTELLDSTVVGRRAGLAAAVLLAFGAAVLTGLIGFAGLATMDIPVAGSLAFSAALTASGLVFAAVAAVAAQLSPSARTSRGIAFSVLAAAFTVRAVGDAGAGALSWLSPLGWSLQVRPFAGDHWWVLALHLITTAALTVAAFLLLGRRDVGSGLLAQRPGPAAAAPRLNGPGGLAWRLDRGAVLLWTVGLTLYGLLIGSVVHGVGDEIGNSDLARDMVTKLGGTSAMEQAFLAVAFTMLAMAASAFVVSLVLRLHQEETAQRLETLLAGSMSRTRWLASHVAVAMLGSAGAMAVAGVAAGLAYGAAAGDVGTTLPTVVGTALVQLPAVWLPGAVALVLFGALPRFTPAAWGVVAGLIAMYLLGSLSGAPQWLLDLQPYSHIPHVGTGTFSATALVWLVVLDAALAVAGIIGFRRRDLR
>NZ_AP022600.1|WP_115280010.1|339745_340645_+|ABC-transporter-ATP-binding-protein
MAIDIRGLRKTFGSAVALDGLDLGVRDGEVHGFLGPNGAGKSTTMRILLGLVRADSGTVRLLDGDPWTDAVRLHRDIAYVPGDVTLWPTLTGGETIDLLARMRGGLDHRRRTELIERFALDPTKKARTYSKGNRQKVSLVSAFSSNARLLLLDEPSTGLDPLMENVFQQCVAEARDRGVTVLLSSHILAETEALCERVTIIRAGRTVESGTLADLRHLSRTSIKAELAGDPGDLSRIRGVEDLVIDGHTLRAQVDSDSLAEVIRALGEAGIRSLVSQPPTLEDLFLRHYDVGTPRVGAA
>NZ_AP022600.1|WP_115280000.1|350439_351015_-|TIGR00730-family-Rossman-fold-protein
MVFPMSSDRESDRQWAVCVYCASGPRHPELLNLATALGAAIADRGWTLVSGGGNVSAMGAVAAGARSHGGRTLGVIPKALVHRELADVDADELVVTDTMRQRKQIMEDRSDAFVTLPGGIGTLEELFETWTAGYLGMHDKPVVMLDPDGHYDGLRTWLSGLVDTGYVGAAALDRLRVVRDVGAALDLCAPL
>NZ_AP022600.1|WP_115279999.1|351026_352046_+|hypothetical-protein
MSITAAAEAAQALAWQGRGREAEEMLAALDTTTEAELLEVALPRAANQFWMLGEPERATAYLRAVRNRINGPAGLTVDALLATFAMNAGAPVRALELAAEVLAAVDATDQAVAWAASTSSLCAARVGRFAEVDTFAERAEAAGHPGLLRYTIGLARITTATMTGDLDRAEAVARDLTSDAPPGAAIGSVLLAWVLMRRGEDSAAAELLAPAAPILERTGYSWGPLSLTLLATALARSGAPADAAKALSRAESRHGTKSALFAPELGLARAWRSAAAADSSGAIAAARQAAQTAERSGQLSIAVLAWREAAELGDGRAEAALQRLAPLLWSDGHQTQSPG
>NZ_AP022600.1|WP_115279998.1|352017_352857_+|helix-turn-helix-domain-containing-protein
MATKPNHLGEYLRARRGLVSPTKVGIVDTGDRRVPGLRREEVAMLAGISADYYLRLERGRDRNPSTQVLEAIANALQLDEDNADHLLSLAADRPRRTRRRTMAVSAPASILGLLPQLALPAFVENNHFDVLASNAMAAALSPRLVAGRNQLQDMFCDPEEIALHPDWDGTTECLLSSLRHSVGTDIDDPLFVEFVDELSLASPRFRNMWDRHDVGAQSGAPTLFDHPTVGRMHLYRERLAVAGAAGVHLVVYHPEAGSPDAHKLTLLAATPAPAHAPAR
>NZ_AP022600.1|WP_115279997.1|352807_353734_-|LLM-class-F420-dependent-oxidoreductase
MTIRLGLQIPNFSYGTPVAELFAAVTAQTREAEAAGFDTVLLMDHFYQLPGLGEPDEPMLEAYTGLAALAASTERVQLSTLVTGNTYRNPTLLAKMITTLDVISGGRAVLGLGAGWFELEHRQLGYEFGTFTERFEKLEESLQIIIPMIHGERPTFSGTWYQTENAVNEPRLRAHIPVMLGGSGEKKTFRLAARYADHLNIIAPMDDLPAKLLVLQQRCAEIDREPATLATSTLLTAIVDGVPSRDMGEAHGGRVVTGAPEEIAQQIKARVFDVGIGGVVVNLPTHGYVPGLVTELGHALAPVLPPTE
>NZ_AP022600.1|WP_115279996.1|353863_354469_+|(2Fe-2S)-binding-protein
MTEIDDARSPVPTQCPFTLNRRTFVGASAAVTGVALLPGCTTPEVGDGADTHVLQMTINGEQRDIDVDVRTSLLDMLRDRAGLTGTKKGCDQGACGACTILLDGERVLSCLTLAVMHDGADVTTIEGVADGDRLHPLQQAFIDTDGLQCGYCTPGQIMSGLGCIAEGHTGSDAEIREWMSGNICRCGAYTNIVRAISNAAQ
>NZ_AP022600.1|WP_115279995.1|354470_355448_+|xanthine-dehydrogenase-family-protein-subunit-M
MRPFRFTTAADEQAAVDAGADGGRFIAGGTTLVDLMRETVDQPGVVVDINALPYRDIELRQDRLRVGALVRMSQLAAAPAVREYFPVITQALEKSASAQVRNMASIGGNLLQRPRCLYFRDVTAPCNRRTPGSGCAAINGHNRTHAILGASASCVATHPSDLAVALVALDAVVHTRDRDGDRQIPVAELFRRPGDTPEREHNLAPGTLITAVEVPRTPEARRSGYLKVRDRESYEFALTSAAVALDITGGRIRAARIAAGGVGTVPWRMHAVERALIGQLPRPQVFASAAAAAADGAQPLSHNAFKVDLITRTITRQLGAVAEMS
>NZ_AP022600.1|WP_115279994.1|355444_357601_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MTTVPTQAAGQPLPRVDARLKVTGAATYTADNTISGLVYAAVIGSSVAVGSVDGINTAEARRHPGVIEVITDFAGVTLPHPPPRIAYFGQPVAMVVASSTEAAAHAATLVEIRYGNPTDPLIDPEAAGAVAQPGTTVDDYSRGDADAALSTAAAVSDLQYRITRHQHNPMELAATVARWDGDRLTVWDKVQGIGPAVEGYAEAFGIPPENIRVISPFVGGAFGQAGLVWPHQRLAALAARRVGRPVRLVLTRKQMSHQLGYRPVSAQRLAIGSDRAGRIAAIVHDSRVETSRDISYEDNITPPPRFMYRSPAMRSTYRVVPLDVSPPTWVRGVGKVTSGFALECGVDDLAHRLGIDPIELRVRNEPDRDMATDLPFSTRRHVECLQRGADAFGWSRRNPTPGSVRDGDQLVGFGVASAVYQSSSSPCSVSARVHADGSADVSTASIDMGPGTYTSMTQIAADALALPVGRVRFHLGDSTFPSAPMHGGQQTMASVGSGVAHACGLLRDKFVRTAVVDPASPLHGAAVADIVVDGGRMTHVSGRSESFQELLLRRGWNHLESEHTWSPQARVEDYSVWSYGAVFAEVAVDELLGTVRVRHLDAYYDAGRIINPRLAHSQAIGGMVWGIGMALLEDSHIDHRDGRVVNANFSDYLVPVNADVPRLDATFLPAEDGIASPIRVKGLGELVMIGVAPAIANAVFNATGRRITELPITPERLL
>NZ_AP022600.1|WP_115279993.1|357578_358655_-|succinyl-diaminopimelate-desuccinylase
MLDLRGDPVALTAALVDIASESRHESRIADEVENALRGQTTGFEIIRNGNAVLARTHRGLPTRVLLAGHLDTVPAADNVPSRRDGEILHGCGTVDMKAGDAVFLHLAATVADPAHDLTLVFYDCEEIEASANGLGRIEQELPQWLQADVAILGEPSDGVIEAGCQGTLRVVVRTTGTRAHSARSWLGDNAIHKLHGVLARLSEYRARDVDIDGCVYREGLSAVRVDGGVAGNVIPDAGSVTVNFRFAPDRTPAQALDHVRAVFDGLDVTIEQTDAAAGALPGLHEPAAAALVRAAGGQARAKYGWTDVARFAALGIPAVNYGPGDPNLAHRRDEHVHVGQITAAVDVLRSYLTAAAPG
>NZ_AP022600.1|WP_115279992.1|358693_359647_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTTVTGASGIGVATLAANGTVLDTWFPAPELGEVDAPGTVQLSVAEATAELAELTGRDEDRDVQTVLVRTSIASLDDAPADAYDVYLRLHLLSHRLVAPHGLNAGGFFGLLANVVWTNYGPCAVEGFEFVRARLRRRGPVTVYGVDKFPRMVDYVVPTGVRVADADRVRLGAHLASGTTVMHEGFVNFNAGTLGSSMVEGRISAGVVVDDGSDIGGGASIMGTLSGGGSEVISVGKRCLLGANAGLGISLGDDCVIEAGLYVTAGTKVTLSDGKTVKARELSGANNLLFRRNSVSGAVEVVTREGKGITLNEALHAN
>NZ_AP022600.1|WP_115279991.1|359738_360083_-|VOC-family-protein
MSLRFSELCIDATDVHSLGHWWAEALGWPSEVTEDGDVQLTPPDGGPVWLFLPVPEGKSVKNRLHLDFTPDDQQAEVARLVGLGARHVDIGQGEQSWVVLADPEGNEFCVLAGH

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Crispr_ID: NZ_AP022600_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_2

1890051-1890208

Orphan

Consensus_repeat	Method
GTGCTCAGCGCGGGCGTGGTGAG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_AP022600_2

>merge|NZ_AP022600|2|1890051-1890208|CRISPRCasFinder
GCGGTCAGCCCCGGTGTGCTCAGGCCCGGCACGTCCAATCCCGGCGTGCTCAGCGCGGGCGTGGTGAGGCCGGGTGTGCTCAGCGCCGGCGTGGTCAGGCCGGGGGTGCTCAGCGCCGGCGTGGTGAGACCGGGCGTGGTCAACCCGGGGGTGGCCAG

>NZ_AP022600|2|2|1890051-1890208|CRISPRCasFinder
GCGGTCAGCCCCGGTGTGCTCAG	GCCCGGCACGTCCAATCCCGGC
GTGCTCAGCGCGGGCGTGGTGAG	GCCGGGTGTGCTCAGCGCCGGC
GTGGTCAGGCCGGGGGTGCTCAG	CGCCGGCGTGGTGAGACCGGGC
GTGGTCAACCCGGGGGTGGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_068919426.1\|1899673_1900534_+\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_AP022600.1\|WP_068914439.1\|1898511_1899564_+\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_AP022600.1\|WP_115278955.1\|1882073_1883495_+\|amidase	unknown	unknown	gnl\|CDD\|223232
NZ_AP022600.1\|WP_068914430.1\|1885497_1886262_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NZ_AP022600.1\|WP_115278954.1\|1883489_1883831_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_083231002.1\|1897457_1898372_+\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_AP022600.1\|WP_115278952.1\|1887002_1887827_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_AP022600.1\|WP_115278948.1\|1893910_1894435_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|238813
NZ_AP022600.1\|WP_068914425.1\|1878488_1879400_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176104
NZ_AP022600.1\|WP_163908620.1\|1890784_1891984_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
NZ_AP022600.1\|WP_115281625.1\|1879548_1880811_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_AP022600.1\|WP_115278953.1\|1886268_1887006_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_AP022600.1\|WP_115281624.1\|1883827_1885378_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|225130
NZ_AP022600.1\|WP_115278956.1\|1880838_1882077_+\|M20-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349880
NZ_AP022600.1\|WP_115278946.1\|1901060_1902077_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455
NZ_AP022600.1\|WP_115278947.1\|1894431_1895349_+\|decaprenyl-phosphate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237058
NZ_AP022600.1\|WP_068914433.1\|1887830_1889438_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|227766
NZ_AP022600.1\|WP_115281623.1\|1895383_1897279_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115281622.1\|1900600_1901038_+\|DUF732-domain-containing-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115278949.1\|1891980_1893918_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|375472

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_068919426.1\|1899673_1900534_+\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	2.32548e-57
NZ_AP022600.1\|WP_068914439.1\|1898511_1899564_+\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	5.16387e-86
NZ_AP022600.1\|WP_115278949.1\|1891980_1893918_+\|glycosyltransferase	gnl\|CDD\|375472	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal. This is the N-terminal beta-barrel domain found in the polymerizing galactofuranosyltransferase GlfT2 (Rv3808c). This enzyme synthesizes the bulk of the galactan portion of the mycolyl-arabinogalactan complex, which is the largest component of the mycobacterial cell wall such as in Mycobacterium tuberculosis. The N-terminal domain contains two short helices preceding a 10-stranded beta-sandwich with jelly roll topology.	1.32698e-88
NZ_AP022600.1\|WP_068914430.1\|1885497_1886262_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	1.40332e-47
NZ_AP022600.1\|WP_083231002.1\|1897457_1898372_+\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	4.78984e-70
NZ_AP022600.1\|WP_115278952.1\|1887002_1887827_+\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.46828e-74
NZ_AP022600.1\|WP_115278948.1\|1893910_1894435_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	8.72937e-17
NZ_AP022600.1\|WP_068914425.1\|1878488_1879400_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176104	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily. This family includes the C-terminal substrate domain of a putative LysR-type transcriptional regulator from the plant pathogen Pseudomonas aeruginosa PAO1and its closely related homologs. The LysR-type transcriptional regulators (LTTRs) are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of N2 fixing bacteria, and synthesis of virulence factors, to a name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.13798e-61
NZ_AP022600.1\|WP_163908620.1\|1890784_1891984_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
NZ_AP022600.1\|WP_115281625.1\|1879548_1880811_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.20659e-113
NZ_AP022600.1\|WP_115278953.1\|1886268_1887006_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	4.94318e-46
NZ_AP022600.1\|WP_115281624.1\|1883827_1885378_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	2.65936e-26
NZ_AP022600.1\|WP_115278956.1\|1880838_1882077_+\|M20-family-metallo-hydrolase	gnl\|CDD\|349880	cd03884, M20_bAS, M20 Peptidase beta-alanine synthase, an amidohydrolase. Peptidase M20 family, beta-alanine synthase (bAS; N-carbamoyl-beta-alanine amidohydrolase and beta-ureidopropionase; EC 3.5.1.6) subfamily. bAS is an amidohydrolase and is the final enzyme in the pyrimidine catabolic pathway, which is involved in the regulation of the cellular pyrimidine pool. bAS catalyzes the irreversible hydrolysis of the N-carbamylated beta-amino acids to beta-alanine or aminoisobutyrate with the release of carbon dioxide and ammonia. Also included in this subfamily is allantoate amidohydrolase (allantoate deiminase), which catalyzes the conversion of allantoate to (S)-ureidoglycolate, one of the crucial alternate steps in purine metabolism. It is possible that these two enzymes arose from the same ancestral peptidase that evolved into two structurally related enzymes with distinct catalytic properties and biochemical roles within the cell. Downstream enzyme (S)-ureidoglycolate amidohydrolase (UAH) is homologous in structure and sequence with AAH and catalyzes the conversion of (S)-ureidoglycolate into glyoxylate, releasing two molecules of ammonia as by-products. Yeast requires beta-alanine as a precursor of pantothenate and coenzyme A biosynthesis, but generates it mostly via degradation of spermine. Disorders in pyrimidine degradation and beta-alanine metabolism caused by beta-ureidopropionase deficiency (UPB1 gene) in humans are normally associated with neurological disorders.	1.19202e-154
NZ_AP022600.1\|WP_115278946.1\|1901060_1902077_+\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	3.17471e-10
NZ_AP022600.1\|WP_115278947.1\|1894431_1895349_+\|decaprenyl-phosphate-phosphoribosyltransferase	gnl\|CDD\|237058	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase.	5.80862e-146
NZ_AP022600.1\|WP_068914433.1\|1887830_1889438_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|227766	COG5479, COG5479, Uncharacterized protein potentially involved in peptidoglycan biosynthesis [Cell envelope biogenesis, outer membrane].	4.41696e-74
NZ_AP022600.1\|WP_115278955.1\|1882073_1883495_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	1.1606e-97

>NZ_AP022600.1|WP_068914433.1|1887830_1889438_-|N-acetylmuramoyl-L-alanine-amidase
MPRRRPAPLLLLTAIAASVVLVPWAIDGVPPGADVPQAADTKLVEQPLAGLGGGETVRELSQATPFSMVALTGDDLTGTEVKVRAKHGDGRWGPWYDAEELQTEPGDVGPGGTDPVFVGLTNTVQVSVTRPPGAPVTTAPPADTSGELGYRPASTERSLAQNMSAILITPPQAPVDLQFTPPTGVLAPGQPPSVISRAQWGADESMKCGGPRYDKGVRAAVVHHTAGSNDYAPQDSAAIVRAAYAYHTRTLGWCDIAYNALVDKYGQVFEGRAGGLDRPVEGGHTGGFNTDTWGVAMIGDFQVTPPTDIQLRTTGRLLGWRLGLDHVDPKGFVKLTSAGGQYTHFPRGTTPTLPTIFTHRDVGNTECPGDAAYAAMDLIRDIASRFNEPVGPITLEDRLRGGAIHTKWKRMGGETSPLGAPRGPEATATGNTRYVAFTRGAIYWSPESGAQPIGGAIYDAWAALGYERGLLGLPTSGEIQEPQWIKQNFQHGTLNFDRETGLVTRVVDGVAQELPPLGPDGPPIQLERFTPISLD
>NZ_AP022600.1|WP_115278952.1|1887002_1887827_+|HAD-family-hydrolase
MTDTTPPALIATDVDGTLLDDHERVSPRTRAAVRAAVDAGTTFILATGRPPRWIPPVVDGLGFAPLAVCANGAVVYDPATDRILSARTLSADALAALADIALRVIPGAGLAVERVGRSAHDAATPQFVSSPGYEHAWLNPDNTEVSIEDLLSAPAVKLLIRKAGATSAEMAVELEKHIGTEGDITYSTNNGLIEVVPLGISKATGVEEVAAPLGIGAEGIIAFGDMPNDIPMLRWSGHGVAMGNAHPEAVAAADEVTARNSEDGLALVLERFWS
>NZ_AP022600.1|WP_115278953.1|1886268_1887006_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MEPVYRFLEVTAESLVAATGTQITFGGLENIPASGPAVVAINHTSYVDWLPAALAVKRRGRRMRFMIKAEMQQVKVVNFLIKRTRTIPVDRSHGSQAYAVAVQRLREGELVGVYPEATISRSFELKDFKSGAARMALEAQVPVVPLIVWGTQQIWTKGHPKQLGRRKFPVTVQAGPALAPVGSAAELEDTMRAAMSAVLTEAQRHHPRPPGAHWLPARLGGTAPTPEEATLLDQAERARRQADGG
>NZ_AP022600.1|WP_068914430.1|1885497_1886262_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MEPAYATVIALSRLAWKIQGLTFTVTGVENLPRTGGAVVAINHTSYFDFTFAGLPAFRQGLHRKVRFMAKKEVFDHKITGPMMRSFRHIPVDREAGAESFAEAVRRLQAGELVGVYPEATISRSFEIKDFKSGAARMAIAADVPIVPHIVWGAQRIWTKDHPKKLLRPKVPISVAVGEPIAPTLPAPELTELLRHRMQHLLERVQEHYGPHPPGEFWVPHRLGGGAPSLAEAALLDAEEAARRAQARTERPGPG
>NZ_AP022600.1|WP_115281624.1|1883827_1885378_-|Rieske-2Fe-2S-domain-containing-protein
MQVTSVGHAGFLIETSAGDILCDPWVNPAYFGSWFPFPDNSTLDWDRLGDCDYLYVSHLHKDHFDPENLRRHVNKDAVVLLPDYPVPDLRRELETLGFHRFVETVDSTKHRVSGPKGDLDVMIIALRAPADGPIGDSGLVVSDGETVAFNMNDARPVDLDVLAAEFGHVDVHMLQFSGAIWYPMVYDMPERAKAAFGTQKRQRQMDRCRQYIAQVGATWVIPSAGPPCFLDDALRFLNDDQGDPANIFPDQMVFLDQMRTHGHDRGLLMMPGTRADFTGSTLNSLVHPLPVDEVEAIFTTGKADYIADYAERMAPVLAELKAGWAPAEGPPLLEPLRQLFEPIMIQSDQICDGIGYPVELRLGAETVVVDFPKRVVREPIADEKFRYGFEIAPELVRTVLRDGEPDWVNTIFLSTRFRAWRVGGYNEYLYTFFKCLTDERIAYADGWFAEAHDDSSSITTDGWEIQRRCPHLKADLSKFGVVEGNTLTCNLHGWQWNLTNGRCLTTKGHELRSRKL
>NZ_AP022600.1|WP_115278954.1|1883489_1883831_-|hypothetical-protein
MSAPPGQSYDDGLVALDRSAITLRRYHFPSGTSKVIPLRDIRGYDVDQLGMFMQRFRIWGSSDLRRWLPLDIQRPLRSTLVTLDVPGLKLRPAFTPARPEEFVAVLDGLLQRS
>NZ_AP022600.1|WP_115278955.1|1882073_1883495_+|amidase
MSDIAFLSATELLGAFRRLELAPAEVLEAQIAEMQTRGADVNACTELLLEEARAAAERAGDTYARCAQSGQQPPALLGLTVATKEKHGIAGRSLESGLLAHRGRIADADHPVVQRIRGAGGIIHARTTSPEFSCATVTHSPMWGVTRNPWNLETSPGGSSGGSGAALAAGFTTLATASDIAGSTRIPAGFTGTVGYKAPFGRIPGLPPLAADWYRGDGPMGRSVADVALLTSVLSGRHPSDHDSWGPTGELPALGGGVEGLRIGVSVRLGDFPVATEIAANTRTVADKLAAAGAQVVEVDLPWTTAQMRRTIFAHFGHILGPAVARESAGARTSKYLQQFIADAAAGAADTSLVDSLAMDARMRGELAAAMADVDVLLCPTSAVTSLRADGDYLDGIDVDGRHLQHYWEAHMTAPFNVANGCPVLAVPSGMSGCGVPTGVQVVGHPYDEAMAFRVAHTVEQLVGFDGRPPAGS
>NZ_AP022600.1|WP_115278956.1|1880838_1882077_+|M20-family-metallo-hydrolase
MGAHEFLTDFHHVATFGATDNNGVDRQAATPEDKLTRDWFAAFVAQRDWQLRVDGIGNMFALVELTPGAPYVLIGSHLDSQPLGGRFDGAYGVIAALHAAERIATRVADENGSPAFNLAVVNWFNEEGGRFPPSIMGSSVFAGLMDEAEMLAVRDLAGVSVAEALDAIGYRGTDPRPDVAGYAEIHIEQGRILEREGIDLGAVDFSWYTQKLDIEVLGEQSHTGATAMADRHDALVAASKVVLLVHEVTKAFEAEALVSSVGRFTVEPNSPIVVARRVHLVADLRSASPAIVAEARASLLADISDVARSHDITINVRDFDVRDIQRFPQAGVELTEKVAADLGLSVRPIRTMAGHDSVPMNRIVPTVMMFIPSVDGVSHCEREFSTDEQMTAGVDALTQVAWEMVNGALVRR
>NZ_AP022600.1|WP_115281625.1|1879548_1880811_+|MFS-transporter
MQKRVLAGGSIGQFIEFYDFTLYGLSAVTLSHLFFPSENALAGLLATFATFGVAFLARPFGGLFFGALGDRIGRRKVLFVTLLSIGLATTLIGLLPTYATIGVFAPILLVLCRLIQGFSAGGESVGAPAFVFEHAPLERRGFWINVTLAATALPSVVGGTLILVLSTTMTPEAFDSYGWRIPFLLALPLAFFGLWIRSKTEESEAFKQVLRKHEHKEYSPIRAAFQENRMRMVQVICVMGLTAMGFYFLTGYFVSYVQVTGDLSREASLGANAVAMAMYALLLPVGGIIGDRVGRKPMLIAGAAALAVLSIPCFMLVTSGSLVLALAGQLLFVLPLCIYGGGCYTFFVEIFTTETRFTSAAVSYNVAYAAFGGTAPFIGTWLVSSTETDSAPGFYMAGAAVLVGLFLVLTKVPETRHRVG
>NZ_AP022600.1|WP_068914425.1|1878488_1879400_+|LysR-family-transcriptional-regulator
MAKSFTLVQLRYFTVVARLENMRAAAYELNVTQSTLSAAIGQLEREVGVQLFHRRSNRGLRLTPAGRRLLVGARSVLEDADLLYHSVRAEREELAGDLVAGIFSPLAPFLAPRILTEFERRHPQVKLSFLEVDQERLIRALAEGTCETALMYDLGLGTEYAYEVLQRVPPHLLVAEDHPRAATPDQPVHLRDFEAEPFILLDLKHSREYYLDIFKRLQIRPRIRHLVSGYETVRSYVSMGHGYSLLNWRLSRDVTYAGGRVVSLELADDLPPTELVLVRLRGGRATRKSLAFQEICIELLADY
>NZ_AP022600.1|WP_163908620.1|1890784_1891984_+|UDP-galactopyranose-mutase
MPMTYDLYVVGSGFFGLTIAERVATQLDKRVLVVERRPHIGGNAYSEAEPETGIEIHRYGAHLFHTSNKRVWDYVRQFTDFTGYQHRVFAMHDGQAYQFPMGLGLVSQFFGRYFTPDEARALIREQAAEIDTADAQNLEEKAISLIGRPLYEAFVKDYTAKQWQTDPKELPAANITRLPVRYTFDNRYFNDTYEGLPVDGYTAWLQNMAADERIDVRLDTDWFDVREQLRAQNPAAPVVYTGPLDRYFDYADGRLGWRTLDFEVDVLDTGDFQGTPVMNYNDADVPYTRIHEFRHFHPERTYPTDKTVIMREFSRFAENDDEPYYPINTEADRALLASYRERAVAETAQAKVLFGGRLGTYQYLDMHMAIASALTMYDNTLAPHLVDGAPLRETGTENP
>NZ_AP022600.1|WP_115278949.1|1891980_1893918_+|glycosyltransferase
MSDIPSGALAADESRAVSLLSRVILPRPGEPLDVRKLYIEESDTNARRAHAPTRTTLEIGAESEVSFATYFNAFPASYWRRWSVLESVVLRVELTGSARVDVYRSKATGARITVGGAPVSGGTADAPAVVEFDVELTPFEDGGWIWFDITTDAGSTLHHAGWYAPVPAPGRANVAVGIPTFNRPEDCVNALAALTSDPLVDKVISAVIVSDQGNKKAVDHPDFAAAAAALGDRLSIHNQPNLGGSGGYSRVMYEALKNTDCEQILFMDDDIRVEPDSILRALALSRFAKTPTLVGGQMLNLQEPSHLHVMGEMVAAQNFMWTNAINTEYDHNFAKYPLADEESERSRLLHRRVDVDYNGWWMCMIPRQVAQELGQPLPLFIKWDDAEYGLRAGERGYPTVTLPGAAIWHMAWSDKDDAIDWQAYFHLRNRLVVAAIHWDGNIRGLIASHFKATCKHLLCLEYSTVAIQNKAMDDFLAGPEHIFSILESALPEVRAMRQTFPDAVVLPSATALPAPSDKRWRKKVTIPVGPVPIGWRLGRGLLHQLKPHDPQHHQRPQINVATQDARWFSLCNVDGVTVTTADGRGVVYRQRDRDKMFALLRESLKRQLLLARRFNRMRKVYRAAVPTLTSTPKWETVLLESSVHG
>NZ_AP022600.1|WP_115278948.1|1893910_1894435_+|phosphatase-PAP2-family-protein
MADTPHGEDAVLVAVQAALAHRPGVLPVATAMSHFGEHSLGWLAVSAAGAVAQPSRRRQWLAVGVGAFTAHAAAVVIKRVVRRPRPHHPAVAINVGTPSKLSFPSAHATSTTAAAMLLSRVTGRRLTVVLVAPMLLSRMVLGVHYPTDVATGAVVGAVTAKVVQKAFEHRESRS
>NZ_AP022600.1|WP_115278947.1|1894431_1895349_+|decaprenyl-phosphate-phosphoribosyltransferase
MSEEAAPVGAPPKNLPAGIVKALRPRQWVKNVLVFLPVVLALGDERVGYDFQAVLLNVVVAFVVFCLAASSIYLINDARDVEADRQHPTKRFRPIAAGVVPQQLAYGLATVLIVVSLGVSWWVTPDLALVMAVYIGIQLAYCFGLKHQAVLDICIVSSGFLIRAIAGGVAAGVELSQWFLLVMAFGSLFMAAGKRYAELQLAERTGAKIRKSLESYTTSYLRFVWTLSATAMVVCYSLWAFQRDGASAGWFAVTIVPLTVAVLRYAVDVDGGMAGEPEEIALRDRVLQLLAVAWIGTISAAVVLG
>NZ_AP022600.1|WP_115281623.1|1895383_1897279_+|hypothetical-protein
MRISLACSVLTAAALFAWGAWQRRWIADDGLIVLRTVRNLLAGNGPVFNAGERVESNTSTLWTYLNYVGALVGGPVRLEYIALTLAYGLSIIGVVLVMLGTARLYAPGLRGRQALLLPAGVLVYIAIPPARDFATSGLENGLVLSYLGLLWWMLVCWAQAPATAAARGRTAGDATGSWFTAALAAVGGLSVLVRPELALIGGLALVLMLIAARSWRTRALILVAGGLLPVAYQIFRMGYYALIVPGTAVAKDASGAKWGQGWTYLTNFNAPYLLWIPAVVLVGLGIAVVAGRAPRELSVPAGYGRLARAVQRPSVIVAFFVVSGLLQGVYWVRQGGDFMHGRVLLTPLFCLLAPVAVIPVVLRQAGYLLAGATTVLWVGVVGWSVWAANSPGMGSDATKVTYSGIVDERRFYAQATGHAHPLTAADYLDYPRMRAMLVAINNTPDGALLLPSGNYDMWDVVPAVPPPADLTAAQRRNYVGPHTVFFTNMGMTAMNVGLDVRVIDQIGLANPLAAHTQRLENGRIGHDKNLYADWAIAEGPFLKTDEWIPSYIDENWIIQAEAALKCPATEAVLESIRDPLGARRFASNVLNAYLYTQYRINRVPEYELLRCGLPEPALDETPYTGLPATGP
>NZ_AP022600.1|WP_083231002.1|1897457_1898372_+|esterase-family-protein
MACAALVAAPSAAAFSRPGLPVEYLDVYSAAMSRNVRVQFQPGNVPNAKAVYLLDGLRAQDDYNGWDINTAAFEWFLDTGVATVMPVGGQSSFYTDWYGRSTFNNQPYTYKWETFLTQELPAFLETRGVSRTGNAAVGLSMSGGSALILAAYHPGQFRYAASLSGFLNPSTPFMQQAIRIAMLDAGGYNVDNMWGAPWDPAWKRNDPTAQVGRLVANNTRLWIYCAPGGSTPIDDVNGDPGQALSATGLEALAIASNLRFQRVYTEAGGRNATFEFPPAGNHSWGYWGGQLQAMKPDLLATLNS
>NZ_AP022600.1|WP_068914439.1|1898511_1899564_+|esterase-family-protein
MKLVDKVRGTWGRKLMAAVAAAAVLPGLVSAAGGSATAGAFSRPGLPVEYLMVPSAGMGRDIKVQFQSGGPNSPAVYLLDGLRAQDDFNGWDINTQAFEWYYGSGLSVVMPVGGQSSFYSDWYSPACGKTGCQTYKWETFLTQELPAYLASQKGVDSSRTAAVGLSMAGSSALTLAIYHPQQFQYAASLSGYLNPSEGWWPFLINISMGDAGGYEANDMWGKTEDPNSAWKRNDPMVNIDKLVANNTRIWVYCGDGVPAEVNGNVAGNNLPAKFLEGLTIRTNRTFKDEYAAAGGTNGVFNFPDGGTHDWPYWGQQLQMMKPDIERVLGAVPFDPAAAAPAPAEPASMGG
>NZ_AP022600.1|WP_068919426.1|1899673_1900534_+|esterase-family-protein
MLSGLVLMGALATATPAAQADTVEYLQVPSAAMGRSIPVAFQGGGPHAVILLDAFNAAPDVSNWVTAGNAMNTFAGKGVSVVAPAGGAWSLYTNWEQDGGKQWETFLATELPNWLAANKGLAPDGHAIVGASQGGTAAITLAEFYPNRFRYAGSLSGFLTPSNTFMNGALHDGMMRFGGADTNLMWGPAQFGRWKWHDPDVHTQLLVDNNTRIWVYSPQTSTASDPAAMIGYADQAQGSNRTFYAHYRSVGGANGHFDFPTSGDHGWGSWAPQLGAMSSDIVAAIA
>NZ_AP022600.1|WP_115281622.1|1900600_1901038_+|DUF732-domain-containing-protein
MLATALLSALAAAVISSCSSGEDLMTSMAPPRADAPASPNGSDATLPSAPNTRDLSITPRQHDYLEALNGSGVRRSSDLMALSIGSYVCQARNAGQSDQGVWDFVFPLVRGEIHDMNPNTAVTAIAAQVDETTAQYIRIATDRLC
>NZ_AP022600.1|WP_115278946.1|1901060_1902077_+|cutinase-family-protein
MVKKSRNTRRRRHRILGLVAAVVVTLAVALVVAIVVIVVRQPESPPTAVPPTAVPPTETTPGTKPRPAFQDASCPDVQMISIPGTWESSPTDDPLNPTQFPRSLMLGVTNPIAGSFPAERVQVYTVPYTAQFHNPFSADGQMSYNDSRAEGTRAAIKAITDMNTRCPLTSYVIAGFSQGAVIAGDIASDIGNGRGPVDQDLVLGVTLIADGRRQDGVGVDVGPNPPGQGAEITLHEVPTLSTLGLAMTGPRPGGFGALNDRTNQICASGDLICAAPEQAFSIVNLPATIDVLLGGAGQPVHALYATPQFWQLDGQPATVWTQNWARGLIENAPQPPHG

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Crispr_ID: NZ_AP022600_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_3

3271792-3271897

Orphan

Consensus_repeat	Method
GACATGTGTGCGGTTTTGCGGGGGACACGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022600_3

>merge|NZ_AP022600|3|3271792-3271897|CRISPRCasFinder
GACATGTGTGCGGTTTTGCGGGGGACACGCCGCTGAAGCTCAGTAGGGCACACATGTGTGCGAGGCGACCGTGGACATGTGTGCGGTTTTGCGGGGGACACGCCGC

>NZ_AP022600|3|3|3271792-3271897|CRISPRCasFinder
GACATGTGTGCGGTTTTGCGGGGGACACGCCGC	TGAAGCTCAGTAGGGCACACATGTGTGCGAGGCGACCGTG
GACATGTGTGCGGTTTTGCGGGGGACACGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_068915609.1\|3275077_3275359_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NZ_AP022600.1\|WP_068915613.1\|3277071_3277305_+\|50S-ribosomal-protein-L29	unknown	unknown	gnl\|CDD\|178971
NZ_AP022600.1\|WP_083736077.1\|3274222_3275059_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NZ_AP022600.1\|WP_115281481.1\|3270234_3271773_+\|carboxylesterase-family-protein	unknown	unknown	gnl\|CDD\|365897
NZ_AP022600.1\|WP_115278047.1\|3266507_3268106_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_AP022600.1\|WP_068915599.1\|3264405_3265842_+\|mycofactocin-system-GMC-family-oxidoreductase-MftG	unknown	unknown	gnl\|CDD\|274888
NZ_AP022600.1\|WP_003883485.1\|3272275_3272581_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NZ_AP022600.1\|WP_115278050.1\|3260964_3262140_+\|mycofactocin-biosynthesis-FMN-dependent-deaminase-MftD	unknown	unknown	gnl\|CDD\|274885
NZ_AP022600.1\|WP_115278046.1\|3268206_3268842_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022600.1\|WP_115278048.1\|3265838_3266498_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
NZ_AP022600.1\|WP_068915605.1\|3272595_3273249_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NZ_AP022600.1\|WP_115278049.1\|3262241_3262970_+\|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE	unknown	unknown	gnl\|CDD\|274883
NZ_AP022600.1\|WP_115278044.1\|3273251_3273899_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NZ_AP022600.1\|WP_115278051.1\|3259779_3260961_+\|mycofactocin-radical-SAM-maturase	unknown	unknown	gnl\|CDD\|188477
NZ_AP022600.1\|WP_068915612.1\|3276655_3277072_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NZ_AP022600.1\|WP_115278045.1\|3268807_3270070_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_AP022600.1\|WP_068915607.1\|3273898_3274201_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NZ_AP022600.1\|WP_115281482.1\|3262996_3264409_+\|mycofactocin-biosynthesis-glycosyltransferase-MftF	unknown	unknown	gnl\|CDD\|274884
NZ_AP022600.1\|WP_068915610.1\|3275358_3275817_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NZ_AP022600.1\|WP_068915611.1\|3275816_3276653_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_068915609.1\|3275077_3275359_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	1.16487e-63
NZ_AP022600.1\|WP_068915613.1\|3277071_3277305_+\|50S-ribosomal-protein-L29	gnl\|CDD\|178971	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed.	4.14193e-25
NZ_AP022600.1\|WP_083736077.1\|3274222_3275059_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_AP022600.1\|WP_115281481.1\|3270234_3271773_+\|carboxylesterase-family-protein	gnl\|CDD\|365897	pfam00135, COesterase, Carboxylesterase family.	2.67316e-139
NZ_AP022600.1\|WP_115278047.1\|3266507_3268106_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	1.55054e-57
NZ_AP022600.1\|WP_068915599.1\|3264405_3265842_+\|mycofactocin-system-GMC-family-oxidoreductase-MftG	gnl\|CDD\|274888	TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function.	0
NZ_AP022600.1\|WP_003883485.1\|3272275_3272581_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.01499e-66
NZ_AP022600.1\|WP_115278050.1\|3260964_3262140_+\|mycofactocin-biosynthesis-FMN-dependent-deaminase-MftD	gnl\|CDD\|274885	TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system. Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system.	0
NZ_AP022600.1\|WP_115278046.1\|3268206_3268842_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.11352e-09
NZ_AP022600.1\|WP_115278048.1\|3265838_3266498_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	3.83169e-47
NZ_AP022600.1\|WP_068915605.1\|3272595_3273249_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	8.54256e-127
NZ_AP022600.1\|WP_115278049.1\|3262241_3262970_+\|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE	gnl\|CDD\|274883	TIGR03964, uncharacterized_protein_putative_amidase, mycofactocin system creatininase family protein. Members of this protein family are uncharacterized Actinobacterial proteins, with homology to creatinine amidohydrolase from Pseudomonas. Members occur only in the context of the mycofactocin system. [Unknown function, Enzymes of unknown specificity].	2.91043e-117
NZ_AP022600.1\|WP_115278044.1\|3273251_3273899_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	1.85136e-109
NZ_AP022600.1\|WP_115278051.1\|3259779_3260961_+\|mycofactocin-radical-SAM-maturase	gnl\|CDD\|188477	TIGR03962, mycofact_rSAM, mycofactocin radical SAM maturase. Members of this family are uncharacterized radical SAM proteins from the Mycobacterium tuberculosis and many other Actinobacteria, as well as some deltaproteobacteria (e.g. Geobacter uraniireducens), firmicutes (Pelotomaculum thermopropionicum and Desulfotomaculum acetoxidans), and Chloroflexi (Thermomicrobium roseum DSM 5159 and Sphaerobacter thermophilus DSM 20745). They resemble several characterized radical SAM enzymes of peptide modification (PqqE, AlbA), and are always found next to the proposed target, TIGR03969, the putative mycofactocin precursor. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP022600.1\|WP_068915612.1\|3276655_3277072_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.60295e-91
NZ_AP022600.1\|WP_115278045.1\|3268807_3270070_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.04638e-82
NZ_AP022600.1\|WP_068915607.1\|3273898_3274201_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	1.69658e-42
NZ_AP022600.1\|WP_115281482.1\|3262996_3264409_+\|mycofactocin-biosynthesis-glycosyltransferase-MftF	gnl\|CDD\|274884	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase. Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin.	1.19635e-164
NZ_AP022600.1\|WP_068915610.1\|3275358_3275817_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	9.7686e-57
NZ_AP022600.1\|WP_068915611.1\|3275816_3276653_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	5.98038e-144

>NZ_AP022600.1|WP_115281481.1|3270234_3271773_+|carboxylesterase-family-protein
MLVGCSDGGADGPASTLDSGVVATAAGSVRGLVAPDHVLFQGIPYAAAAVGDLRFAPPAPPPRWEGMRDATKVGPRCIQDAARDPDWGRGMSEDCLSLNVWSPTDAEDLPVMVWIHGGAFVNGSADLYNAQWLATRGDIVVVTVNYRLGALGFLAHPALGPEAEVGNYGLADQQAALRWVRDNIAAFGGDPAKVTVAGESAGAMSVCDHLVSPGSAELFRAAILMSGPCGAQIDVAAARQPSLDYAAGVGCPESAAAPACLRALPADALTEPVPFGLLGDEALSGPVTGTTILPVDPVEAMEQGEVGQLPVLVGTTSDEFTLFMALEFLRSGREPGPADYPGLLERTFGADAVAVERQYPLAAHADNTSLAYAAAVTDGQFACVNASMADGMAAAGAPVYSYEFTDASAPAPEPLRQVPFPVGASHSLELRYLFDIGGAPALNTAQQRLSDQMIGYFTAFVRDGVPAAPDAPEWPRLDGAGGPRMSFDTGGSEVRSGFEQEHQCDFWAGLRR
>NZ_AP022600.1|WP_115278045.1|3268807_3270070_-|cytochrome-P450
MSTPTQHRRTSEDGRVLADPTAYADDDRLHAALTRMRAQEPVAWVDQAPYRPFWAITKHADIMAIERENNLFISEPRPLLSTAQADDLAKAQLEAGMGLRTLIHMDDPHHRGVRAIGADWFRPKAMRALKVRVDELAKRYVDQMRDIGPECDFVTDIAVQFPLYVIMSLLGLPEEDYGRMHTLTQEMFGGDDDEYKRGTTPEEQMAVLLDFFSYFSTLTASRRANPTDDLASAIANGRIDGEPLSDVDTASYYVIVASAGHDTTKDAISGGLHALIENPSEMERLRENPDLMPLAVEEMIRWSTPVKEFMRTATADTEVRGVRIAEGESVYLAYVSGNRDEEVFDDPFRFDISRDPNRHVSFGYGVHFCLGAALARMEMNSLFTELVPRIESIELAGTPELSATTFVGGLKHLPIRYSLR
>NZ_AP022600.1|WP_115278046.1|3268206_3268842_+|TetR/AcrR-family-transcriptional-regulator
MTSGRTDPRPARSRARLLESATALLRTGGPSAVTVDAVLRGANVARATLYRHFPSGNDLVAAAFHALIPPAPTPPDQGSLRDRLIALVQAQAQLIADAPISLTAMSWLSLGGDMAHYPSSTDSAEVQTLRQRVAEQYAAPFEAILRSPDAVAELGEVDRAEAAALLLGPIALAKLSTLPDVDYDRLAVLAVDGYLATHRVVSAGSTGSAGA
>NZ_AP022600.1|WP_115278047.1|3266507_3268106_-|MFS-transporter
MVDTLTRHRQPTDPAMSAVSSRGRLWLLIVACLDVSIVVSSMIALNTALGDIAVSTSATQTQLTWVVDGYTLALACLLLPAGAIGDRYGRRGALLIGLAIFGLASAAPLVFDSPLQLIIARAAAGAGAAFIMPATLSLLTAAYPKDLRSRAVGIWAGVVGSGAVVGFLGSGLLLRHWEWQSIFWAFTAASAVLLVLTCTVPSSKDPAAAPLDWAGAALVAAALAIFVFGIVEAPVRGWTDPLVGGCLAAGLGLAAAFATLELRRRHPLLDVRLFGDAHFATGAAGITLLFFANFGFFFVVIQYIQLVMGYSALATAMALVPLMGPVLLLSVTNGWYIPKIGLRVALVTGLVLIAAGLLCMCLLHLDSSYWDLAWPLIIMSTGIGLCTAPMTSAIMTSTPDEKQGVASAVNDTTREVGAAVGIAIAGSLLAARYDDAIAPALAGLPEQARDPAQSSLAEALQVAGQLGPAGPALADTAQSAFLQAMDSSLVAMALVLLVAAVLAGLWAPGRDDRQLRFVRALRARRAPGRHRA
>NZ_AP022600.1|WP_115278048.1|3265838_3266498_-|aspartate/glutamate-racemase-family-protein
MRLLLVNPNTTESMTDAIAAGAASVARPGTVVEAVNPPFGPASIENDDDERRCVPGLLAQLTAAQQRPAETRPDAFVIACFGDPGLEQARRLTGRPVLGIAQAAMHAAALAAGTFSVVTSMSATVPRGWELAKTYTPAACLGVHACDIPVLRIDSDPTTLQPIGALCEQALAADGSRSIVLGCAAMARFAEPLRRRLGVPVLDGVAAATLLAEALVPLS
>NZ_AP022600.1|WP_068915599.1|3264405_3265842_+|mycofactocin-system-GMC-family-oxidoreductase-MftG
MTAHSDVLIIGAGSAGSVLAEQLSAEPDRVVTVLEAGPGTHEAGVDALTRNGLQLPIGAASPLVVRYATELTTAPQRVAQLVRGATVGGSGAVNGGYFCRATRADIEGWQLPGWGWDDVLAHYRAIETDLDFGEHPDHGAEGPIRVRRTTDLAGSTAALVTAAERAGFAWLPDLNAADVVADGIGAVPLNIVDGVRNGPGAAFLVPATARRNLTVLTRTRAHRITFSGGRATGVEVTGPHGSTTLTADRIVLCCGALGSAHLLMLSGIGDEAQLRQAGVPLTVAAPVGQHCADHPEWVLPTDWAHAPHRPVLEVVLSVRGELEIRPYTGGFVAMVGDGSAGRPDWPHLGVALMQPRTRGRVALTSADQSAPLHIEHRYDDEAADVAALQDGVELARELAAAANDIGEPAWATSQHLCATAPMGLDGDPVAVTDPQCRVRGVDGLWVVDGSVLPAVPSRGPHATIVMLAHRAAEFVAAG
>NZ_AP022600.1|WP_115281482.1|3262996_3264409_+|mycofactocin-biosynthesis-glycosyltransferase-MftF
MAETRLPDGFAVQIDRRVKVLGAGAALLGGSPARLLRLAPAAQDMLDGGRLEVYDATSATLARTLLDATVAHPRPAGGPGYRDVTIVIPVRDNTFGVKRLVASMRGLRVLVVDDGSAIPVSVADFAGTHCDVEVLRHPVSRGPAAARNTGLAASHTDFVAFLDSDVVPRRGWLEALLGHFCDPAVALVAPRIVGMSATDNLVGRYEAVRSSLDLGHREAPVVPYSTVSYVPSAAIICRRRTVAELGGFDETMHSGEDVDLCWRLVESGARLRYEPIALVAHEHRTKVRDWLARKAFYGTSAAPLSRRHPDKTAPMVVSAPTVVMWLLVALGTRLGYLASLVAVGVTGRRVANAMAAPETGRRDVVAVTGRWLGSSVLQLASAICRHYWPAALLAAVCSHRCRRIVVLAAVFDGVVDWLSRRHHADEDTRPLGLPAYVVLKRLDDLAYGTGLWAGVVRERNLRPLRPQFRL
>NZ_AP022600.1|WP_115278049.1|3262241_3262970_+|mycofactocin-biosynthesis-peptidyl-dipeptidase-MftE
MNSAYHRHVPHRSELGSSTSGQLHQFSSAVLVPVGSCEQHGPHLPLDTDTRIAAAVSSALAQRHPGYLVAPSVAYGASGEHESFPGTVSIGQDALHGVLVEFGRSACRWAPRVLLVNGHGGNVGALRSATRLLRYEGRDVAWSSCSVPGGDAHAGHTETSVLLYLSPSDVLMDRIRPGNSAPLAELMPRMRHGGVAAVSEVGVLGDPTTATAVDGARLFDGMVTACSERVTRWSPDADGMLR
>NZ_AP022600.1|WP_115278050.1|3260964_3262140_+|mycofactocin-biosynthesis-FMN-dependent-deaminase-MftD
MARDTWFETVAIAQQRAKKRLPKSVYSSLISASEKGVTVTDNVESFAELGFAPHVVGASAKRDMATTVMGQNISLPVIISPTGVQAVDPDGEVAVARAAAARGTAMGLSSFASKPIEEVCAVNDKIFFQIYWLGGKEAILERAQRAKEAGAVGLITTTDWSFSHGRDWGSPKIPEQMNLKTMLKMSPEVLTKPRWLWEFGKQLSPPDLRVPNQGRRGEPGPTFFQAYGEWMGTPPPTWEDIAWLRERWDGPFMVKGIVRVDDAKAAVDAGVSAISVSNHGGNNLDGTPAAIRCLPAVAEAVGDQIEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAAEGQTGVENVLDILRGGIDSALMGLGKSSIHDLTPDDILVPDGFTRTLGG
>NZ_AP022600.1|WP_115278051.1|3259779_3260961_+|mycofactocin-radical-SAM-maturase
MTATLPVPRLVDQFERGLDAPICLTWELTYACNLACLHCLSASGKRDPRELSTEQCKAIIDELERMQVFYVNIGGGEPTVRPDFWELVDYATDHHVGVKFSTNGVRITEAVAAKLAASDYVDVQISLDGATAEVNDAVRGRGSYDMAIRALTNLAEAGFRDAKISVVVTRHNVDQLDEFKALADRFGATLRITRLRPSGRGADVWDELHPTAAQQVQLYDWLVAHGERVLTGDSFFHLSGLGAPGALAGLNLCGAGRVVCLIDPIGDVYACPFAIHDKFLAGNLVSDGGFAQVWQHAPLFRELREPQSAGACASCNHYDACRGGCMAAKFFTGLPLDGPDPECVQGYGESALAGDRTKPKPSGDHSRTTKGRNDPVLLTLSAPPKKFCNESPV
>NZ_AP022600.1|WP_003883485.1|3272275_3272581_+|30S-ribosomal-protein-S10
MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ
>NZ_AP022600.1|WP_068915605.1|3272595_3273249_+|50S-ribosomal-protein-L3
MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVNKPVTGQFAAAGVNPRRHLAELRLDDEAAAAEYELGQELTAEIFADGAFVDVTGTSKGKGFAGTMKRHGFKGQGASHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDKVTTQNLKVHKVDAENGVILIKGAIPGRNGGLVMVRTAIKRGEK
>NZ_AP022600.1|WP_115278044.1|3273251_3273899_+|50S-ribosomal-protein-L4
MATTIDVRTPDGKTDGTVELPAALFDVEANIALLHQVVTAQLAAARQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSQRTPKKMIAAALRGALSDRARNQRIHAVTELLSGQTPSTKAAKAFLASLTENKKVLVVIGRADEVGAKSVRNLPGVHVISPDQLNTYDVLHADDVVFSVEALNAYIEANTKEGANA
>NZ_AP022600.1|WP_068915607.1|3273898_3274201_+|50S-ribosomal-protein-L23
MATIADPRDIILAPVISEKSYGLIEDNVYTFIVHPDSNKTQIKIAIEKIFKVKVDSVNTQNRQGKRKRTRAGYGQRKSTKRALVTLAAGSKPIDLFGAPA
>NZ_AP022600.1|WP_083736077.1|3274222_3275059_+|50S-ribosomal-protein-L2
MAIRKYKPTTPGRRGSSVSDFAEITRDHPEKSLVRPLHGKGGRNAHGRITTRHKGGGHKRAYRVIDFRRHDKDGVNATVAHIEYDPNRTANIALLHFLDGEKRYIIAPEGLKQGAVIESGANADIKPGNNLPLRNIPAGTVIHAVELRPGGGAKLGRSAGVSIQLLGKEGTYATLRMPSGEIRRVDVRCRATVGEVGNAEQGNINWGKAGRMRWKGKRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRKNKPSDKLIVRRRRTGKNKR
>NZ_AP022600.1|WP_068915609.1|3275077_3275359_+|30S-ribosomal-protein-S19
MPRSLKKGPFVDGHLLKKVDVQNEKNTKQVIKTWSRRSTILPDFIGHTFAVHDGRKHVPVFVTEAMVGHKLGEFAPTRTFKGHIKDDRKSKRR
>NZ_AP022600.1|WP_068915610.1|3275358_3275817_+|50S-ribosomal-protein-L22
MTTAIEYPSAMAKARFVRVSASKARRVIDLVRGKSVAEALDILRWAPQSASEPVAKVIASAAANAQNNEGLDPDTLVVAAVMADEGPTAKRIRPRAQGRAYRIRKRTSHITVVVESRPAKKSGASANAARSRRAQASKAASAKTADSKEGSE
>NZ_AP022600.1|WP_068915611.1|3275816_3276653_+|30S-ribosomal-protein-S3
MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRKLLATGLERAGIANVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQLNILEVKNTESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAAPAADRPRRERPSGTRPRRSGASGTTATSTDAGRAATEAPAVAEATQGTEAAAGATETTES
>NZ_AP022600.1|WP_068915612.1|3276655_3277072_+|50S-ribosomal-protein-L16
MLIPRRVKHRKQHHPQQRGIASGGTSVSFGDYGIQALEHTYLTNRQIESARIAINRHIKRGGKVWINIFPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVLFELSYPDEKIAREALTRAIHKLPIKARIITREEQF
>NZ_AP022600.1|WP_068915613.1|3277071_3277305_+|50S-ribosomal-protein-L29
MAVGVTPGELRELTEEELTDRLRESKEELFNLRFQMATGQLDNNRRLRTVRREIARIYTVLRERELGLTAGPDGEES

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Crispr_ID: NZ_AP022600_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_4

4428825-4428931

Orphan

Consensus_repeat	Method
GGCACACATGTGTGCTCAGCTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022600_4

>merge|NZ_AP022600|4|4428825-4428931|CRISPRCasFinder
GGCACACATGTGTGCTCAGCTCGGGCGCGGCGGCGTGTTGCGCGGTAAACCGCACAGTTGTGGGGTGTGGCGGCTTCACGCCGGGCACACATGTGTGCTGAGCTCGG

>NZ_AP022600|4|4|4428825-4428931|CRISPRCasFinder
GGCACACATGTGTGCTCAGCTCGG	GCGCGGCGGCGTGTTGCGCGGTAAACCGCACAGTTGTGGGGTGTGGCGGCTTCACGCCG
GGCACACATGTGTGCTGAGCTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_115277333.1\|4423585_4424659_+\|putative-zinc-binding-metallopeptidase	unknown	unknown	gnl\|CDD\|226757
NZ_AP022600.1\|WP_115277330.1\|4429070_4429358_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_AP022600.1\|WP_068919795.1\|4437091_4438288_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_AP022600.1\|WP_115277334.1\|4422681_4423593_+\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_AP022600.1\|WP_115277325.1\|4434418_4435219_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_AP022600.1\|WP_115277331.1\|4425994_4426582_-\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214880
NZ_AP022600.1\|WP_115277327.1\|4432658_4433195_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_AP022600.1\|WP_163908314.1\|4413849_4414623_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_AP022600.1\|WP_163908316.1\|4427469_4428804_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_AP022600.1\|WP_115281359.1\|4426575_4427418_+\|DUF3097-domain-containing-protein	unknown	unknown	gnl\|CDD\|378628
NZ_AP022600.1\|WP_115277335.1\|4419829_4422685_+\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|225190
NZ_AP022600.1\|WP_115277324.1\|4435228_4435621_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|366666
NZ_AP022600.1\|WP_115277337.1\|4415630_4416560_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221
NZ_AP022600.1\|WP_115277322.1\|4438305_4438992_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_AP022600.1\|WP_115277323.1\|4435621_4437019_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341047
NZ_AP022600.1\|WP_115277332.1\|4424803_4425985_-\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
NZ_AP022600.1\|WP_115277326.1\|4433187_4434429_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|224475
NZ_AP022600.1\|WP_115277329.1\|4429473_4429875_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_AP022600.1\|WP_115277328.1\|4429961_4432652_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_AP022600.1\|WP_115277338.1\|4414635_4415472_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_115277333.1\|4423585_4424659_+\|putative-zinc-binding-metallopeptidase	gnl\|CDD\|226757	COG4307, COG4307, Uncharacterized protein conserved in bacteria [Function unknown].	1.29318e-166
NZ_AP022600.1\|WP_115277330.1\|4429070_4429358_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.4765e-06
NZ_AP022600.1\|WP_068919795.1\|4437091_4438288_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_AP022600.1\|WP_115277334.1\|4422681_4423593_+\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	3.94102e-55
NZ_AP022600.1\|WP_115277325.1\|4434418_4435219_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.63494e-90
NZ_AP022600.1\|WP_115277331.1\|4425994_4426582_-\|CHAD-domain-containing-protein	gnl\|CDD\|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	2.30512e-10
NZ_AP022600.1\|WP_115277327.1\|4432658_4433195_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.84846e-53
NZ_AP022600.1\|WP_163908314.1\|4413849_4414623_+\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	1.5264e-25
NZ_AP022600.1\|WP_163908316.1\|4427469_4428804_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_AP022600.1\|WP_115281359.1\|4426575_4427418_+\|DUF3097-domain-containing-protein	gnl\|CDD\|378628	pfam11296, DUF3097, Protein of unknown function (DUF3097). This family of proteins with unknown function appears to be restricted to Actinobacteria.	5.89397e-161
NZ_AP022600.1\|WP_115277335.1\|4419829_4422685_+\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|225190	COG2308, COG2308, Uncharacterized conserved protein [Function unknown].	0
NZ_AP022600.1\|WP_115277324.1\|4435228_4435621_+\|prepilin-peptidase	gnl\|CDD\|366666	pfam01478, Peptidase_A24, Type IV leader peptidase family. Peptidase A24, or the prepilin peptidase as it is also known, processes the N-terminus of the prepilins. The processing is essential for the correct formation of the pseudopili of type IV bacterial protein secretion. The enzyme is found across eubacteria and archaea.	3.81156e-07
NZ_AP022600.1\|WP_115277337.1\|4415630_4416560_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	5.28526e-32
NZ_AP022600.1\|WP_115277322.1\|4438305_4438992_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	9.93373e-75
NZ_AP022600.1\|WP_115277323.1\|4435621_4437019_-\|MFS-transporter	gnl\|CDD\|341047	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of putative multidrug resistance (MDR) transporters including Chlamydia trachomatis antiseptic resistance protein QacA_2, and Serratia sp. DD3 Bmr3. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.0771e-32
NZ_AP022600.1\|WP_115277332.1\|4424803_4425985_-\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NZ_AP022600.1\|WP_115277326.1\|4433187_4434429_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	4.71069e-94
NZ_AP022600.1\|WP_115277329.1\|4429473_4429875_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	4.56661e-46
NZ_AP022600.1\|WP_115277328.1\|4429961_4432652_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_AP022600.1\|WP_115277338.1\|4414635_4415472_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.37414e-68

>NZ_AP022600.1|WP_163908316.1|4427469_4428804_+|replication-associated-recombination-protein-A
MSDSLFDLTGPEPARGLGPVEPAPNAPLAVRMRPRSLDEVVGQQHLLGQGSPLRRLVDGSGAASLILYGPPGTGKTTLASLISNATGRRFEALSALSAGVKEVRAVIDVARRSAIHGEQTVLFIDEVHRFSKTQQDALLAAVENRVVLLVAATTENPSFSVVAPLLSRSLILALQPLTAQDIATVLRRAISDPRGLGGAVAVDDDAVDLIVALSAGDARRALTALEVAAETGERVTVEVIEQSLDKAAVRYDRDGDQHYDVVSAFIKSVRGSDVDAALHYLARMLTAGEDPRFVARRLMILASEDIGMADPTALPTAVAAAQTVQLIGMPEAQLTLAHATVHLATAPKSNAVTTALGAAMADIRAGKAGPVPAHLRDGHYSGAAALGHAQGYKYSHDHPDGVVPQQYPPDELVGTDYYQPVPRGAEREISTRVERLRAIIRRPR
>NZ_AP022600.1|WP_115281359.1|4426575_4427418_+|DUF3097-domain-containing-protein
MTDRYGTDVLADNPHQRRKVRAVETAVEMGMVLEDVTSGFVGAVVRVEYGRMDLEDRHGRRRGFPVGPGYLLDGKPVILTPPRKAAPVAPTRTASGSVAVQGVRARTAIGGRIYVEGRHDAELVEQVWGDDLRIEGVVVEYLGGVDDLPALVAEFAPGPGRRLGVLVDHLVTGSKESRIADAVRSGPHGEDALVVGHPFVDIWQAVKPARVGLTAWPTIPRSIEWKHGICQALGWPHADQADIARAWQRIRSRVRDWNDLESALIGRVEELIDFVTAPGQ
>NZ_AP022600.1|WP_115277331.1|4425994_4426582_-|CHAD-domain-containing-protein
MSRRRCYEPGRPPDAAPHRRSPDRDRRETSAAAVWPPRSRVAAVHSRTPSPRPGPGLQPPAQPRPVESDVIADLGVSADKVRPVELTRWRRTAPLRSTVTGKALARRACKAERIAARRLADAVTGSGHDALLHRARKAARRARYGAEVTADKRTIKRFKQIQSVLGDHQDTVVAREQLHRMAVTAGTVFAWPMPG
>NZ_AP022600.1|WP_115277332.1|4424803_4425985_-|glutathione-dependent-formaldehyde-dehydrogenase
MKAVTWQGKRDVRVETVPDPILVESTDAIIEVTATNICGSDLHLYEVLGAFMKPGDILGHEPMGIVTEVGSSVTNLKVGDRVVIPFQISCGSCFMCDQQLYTQCETTQVRDQGMGAALFGYSELYGQVPGGQAEYLRVPQAQFTHIKVPDGPPDSRFVYLSDVLPTAWQSVAYAGIPDGGSVTVLGLGPIGDMAARIAAHLGYQVIGVDLVPERLERLAARGIQTINAGSLDSPVGDAIRDLTEGRGTDAVIDAVGMEAHGSPVTKAVQQISGLLPDALAKPLMENAGVDRLDALYTAIDAVRRGGTISLIGVYGGMADPLPMLTLFDKQIQLRMGQANVKKWVDDIMPLLTDADPLGVDTFASHVLPLEEAPHAYDIFQKKQDGAIKMMLKP
>NZ_AP022600.1|WP_115277333.1|4423585_4424659_+|putative-zinc-binding-metallopeptidase
MRDFLCPNCGQHLTFENSVCLSCGKPVGFSLDDMAMLVIASGEEAEQSGAVDARQFRLCANLHVAQCNWLVRLNPASTVQGELCASCRLTRTRPNDSDTTALAQFAVAEGAKRRLIAELHELKLPIVGRDADPDFGLAFDLLSSAMEKVFTGHENGVITLDLAEGDDVHREQLRISMDEPYRTLLGHFRHEIGHYYFYRLIGTSAAYQQRAQELFGDAEADYQAALDRHYSEGAPAGWEDSFVSSYATMHPAEDWAETFAHYLHIRDTLDTSAAFGFAPAGATFERRALGPSGFDTMIDMWLPLAWGLNMVNRSMGRDDLYPFVLPAAVLEKMRFVHQVIDEVTSDPAKLAAASAAG
>NZ_AP022600.1|WP_115277334.1|4422681_4423593_+|transglutaminase-family-protein
MSVFPPARCYRVTHQTTYRYSDVVTSSYGRGFLTPRDTVRQRCLSYGLDIDPAPADSSISRDVYGNISSYFHVTTRHDVLTVTAGSVVEVDAPPPSLYRAGAAAQPWEESRPVGVDGALAAEFTLDLRPPEITAAVREYAAPSFAPGRPLIDVLDDLNARIFTDFTYRSGSTTVSTQVAEVLEAREGVCQDFARLAIACLRANGLAATYVSGYLATDPPPGKERMVGIDATHAWAAVWTPQGDWLGLDPTNDQMVDERYIIVGWGRDYADVPPLRGIIYTDSESSVIDVAVDVAPMQGEVLDA
>NZ_AP022600.1|WP_115277335.1|4419829_4422685_+|circularly-permuted-type-2-ATP-grasp-protein
MPSRRNRGAAGALKRPASPPVRSTSPTSGRSRLASPPTWARRAFSTCVGCVPCCSRRSGPAEREELATPLSAPGSFGGREAGGLDPDGLLASYRDARAQQLLFPLNQTPATGYDEFVDPVGNVRQTWRELARVLGDRGRAGLDRLRTDVRSLVDNDGITYIQLDSDGEAVTLDPDGTAEPGPWYLDAIPLLVSPADWEVLQAGLVQRSRLLDAVLVDLYGDRKSITSGVLPPQLLFSHPGYLRAARGIAAPGRHQLFLHGCDVSRAGSDGYLVNADWTQAPSGAGYALADRRVVAHAIPDLYERIAPRPTSPFAQALRLSLIEAAPEAAEDPVVVVLSPGIHSETAFDQAYLASVLGFPLVESADLVVRDGALWMRSLGTLKRVDVVLRRVDAEYADPLDLRADSRLGVVGLVEAQRRGSVTVVNSLGSGILESPAILRFLPELAELLVGETPLLPTAPMYWAGIDAERSHLLTHLDSLLIKSATGEAPIVGPALSAAQRAALAERINATPWQWLGQDLPQFSSAPTDHYPGGLSAAGVGMRLFAVSQRGGYAPMIGGLGYVLAPGASAYKLNSVAAKDIWVLPSTRAAAERTAGLPTVSASGTRAVSSPRVLSDLFWTGRYAERAELMARLLNVTRERFHEYRHRQDLDASECVPVLLSALGDITGTDTGTDGDKAEMIAVAPTTMWLLTADRRRPGSLAQSIERLGLAARAVRDQMSNDTWMVLATVDRAVLHSSDSPPDSHLRGDAEMASAHARTLQGMLALSGVAAESMVHDVGWLMMDIGKRIERGLMLAALLRSTMTTVRAPDAEQTITEATLVACESAVIYRRRNLGKVSVAAVAELLLFDAENPRSLVFQLERLRTNLRALPGASTSSRAERLVDEISTRLRRLDPDDLEDVGPQGQRSELAGLLDAVVAGLRELSGVITATQLSLPGGMQPLWGPDERRVMP
>NZ_AP022600.1|WP_115277337.1|4415630_4416560_+|DUF389-domain-containing-protein
MMHLRVVAPEHLREPVLQVLRRQVGVANLSVFPGVALEPAGDEITADLARECANEVIKELKLLDVQHLGAITLHHLDTVLSTRAHQAEDAAEGDPADALVWDELIGRTREESSLSVTFLLFLTLACLLTAIGVVTDSTVTVVGAMVLGPEFGPLAALSVALVRRRGDLTRRAALALLIGFPIAVGITALATMASRALGWLSVDSVHNLQEVDFIFQVGPVSFVVALLAGAAGMLSLVSAKATGLVGVFISVYTVTAAGFAAVAATLGDWELAAKSALQLLVNLVGIVLAGVLVLVLRPRGVPLPHSAHS
>NZ_AP022600.1|WP_115277338.1|4414635_4415472_-|DeoR/GlpR-transcriptional-regulator
MTIDAKTRRDLILQRARADREVSYAALAAQFDVSEMTIRRDIEALEARGAVRRVVGGAVAVLGKDIEPAFSTRVADAASEKHHIADAVAELIGPKETLILDAGSTSLAVARSLRGRALGLTVVTPSVPIAVALVDEPDTNVVMTGGELRTGELSLVGSGAEEMLTRYNCDTYVMGVAGIDAERGFSDYLLAEARMKRVALSRADRVIVAADRSKLGRVNFVGIAALAQVDTIVTDGAVDHPALVCARSEGVDVICLDEPKGASPNRFPRRNGQVTQGQ
>NZ_AP022600.1|WP_163908314.1|4413849_4414623_+|HNH-endonuclease
MGKQRPDGMRPFEGLLTPEAWATLEPLLERNAAPGMCNPADEHPCLDGEPTEEQIRNDTRTTGKRNHDALLALCQRLLTTQPTGTINGLPANVVITVSLTDLEKGTGHGLTAGGTLLPIADVLKFAAHSRPWLALFDGKGLPLHLGRARRTATLAQRLMLLAKHRGCTMPGCTASAYRCQVHHANQDWKDGGRTDIDDLTLACGPNNRMVETTGWTTRNRPDDGVTEWIPPPHLDCGQSRTNNLHHPERIIDPGDDP
>NZ_AP022600.1|WP_115277330.1|4429070_4429358_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MTVTGIITAIIIGAVIGLLGRLLLPGKQPIGVLLTIVVGIVAALLGTFLARSMGIATATAGVDWMELLVQVVLAVVGVALVSALTSKRRGGVVRR
>NZ_AP022600.1|WP_115277329.1|4429473_4429875_+|YjbQ-family-protein
MFTDVLDIDTRTRRLVDLTDDVAAFCSARGDGLCNVFVPHATAGVAIIETGAGSDDDLLDALERLLPRDDRYRHSHGSPGHGADHVLPGIVSPSVTVPVQAGRLLLGTWQSVVLVDLNRDNPRRSVRLSFLGG
>NZ_AP022600.1|WP_115277328.1|4429961_4432652_+|alanine--tRNA-ligase
MQTHEIRKRFLDHFVKAGHTEVPSASVILDDPNLLFVNAGMVQFVPFFLGQRTPPYERATSVQKCIRTPDIEEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNSVDDGGYGFDPEKLWATVYLDDDEAIEIWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPCSEIYYDRGPEYGVGGGPEANEDRYIEIWNLVFMQNERGEGTSKDNFEILGPLPRKNIDTGMGVERIACLLQGVDNVYETDLVRPVIDLVASIAPRGYGAGNHDDDVRYRIIGDHSRTAAIIIGDGVTPGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMSQLMTTVRDEMGPSYPELVTDFDRINRIAVAEETAFNRTLAAGSKLFDDAAQSTKAAGVTVLSGANAFTLHDTYGFPIDLTLEMAAEAGLSVDEAGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELSSQATILGIFVDGKRVPVITHGGEGATPDRVEIVLDRTPLYAESGGQIADIGAISGAGGAARAQVTDVQKIAKTLFVHRVNVESGEFVEGDTVTADVDPKWRHGATQGHSGTHMVHAALRQILGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQRTEIEMVANEAVEADYPVNTMYTKLEKAKAMGAMALFGEAYPEDVRLVEIGGPFSLELCGGTHVHNSAQIGPVTLLGESSVGSGVRRVEAYVGLDSFKHLAKERALMAGLASSLKVPSEEVPARVATLVEKLRTAEKELEKVRLATARSAAVDAAAGAETVGKVRLVAQRMSGEMSAGDLRSLIGDIRGKLGNDPAVVALIAEGEGGSVPYVVAANAAAQDLGLKSGDLVKVLATAVDGRGGGKPDLAQGSGRNAAGIDAALQALRAEVARS
>NZ_AP022600.1|WP_115277327.1|4432658_4433195_+|Holliday-junction-resolvase-RuvX
MPSHEATSGQTRLPDRPGGDDPGRGRRLGVDVGTVRIGVATCDPDGILATPVETVRREKSGRHLRRLRQLVSEYEAVEVIVGLPRTLADRAGSSALDAIDIADRLAERIAPVPVRLADERLTTVTAQRSLREAGITARGQRAVVDQAAAVAILQGWLDQRRTVLTESAGAVTPEEQHG
>NZ_AP022600.1|WP_115277326.1|4433187_4434429_+|endolytic-transglycosylase-MltG
MADDWDDRAQPVAVGPPRRGMTRAARIRAERARRRRRTVAALSVAMLIAVVIGTVFLGSRLWHSMFGAPSDYTGDGVSDVVIQVHPGDSATAIGQTLLDAGVVATLDGFVTAASNNSAMAAIQPGFYKVRTEIPAGSAVDRLIDPANRVGNFTIPEGRQLDDMTDVRTGAVTPGVLSLIAQATCTDLDGQQSCVSVDDLRNAASGDNLEALQVPQWAIEPATAMGGDHRRLEGLIAAGTWDVDPSAPPEQILASLISASSARYEASGLLDTAAAMNISPYDVLVVGSLVQRESLPQDFPKVARVIYNRLAENRKLEFDSTVNYSLDRQEIATTDADRARVTPWNTYASFGLPATPISSPSEAALAAAERPEPGDWLFFVTIDMQGTTLFTREYEQHLANIQVAQRNGVLDSAR
>NZ_AP022600.1|WP_115277325.1|4434418_4435219_+|shikimate-dehydrogenase
MPGDRKAAVLGKPIAHSRSPQLHLAAYRALGLTGWTYDRIECTAEQLPALVDSLGPEWVGLSVTMPGKFAALAYASERTERAELVGSANTLLRTESGWRADNTDVDGVAGALGGPLTGSALVLGAGGTAPAALVGLATLGIDHVVVAARNQDKAARLLALAGALGVGAECTTLEPETLARRAAAAAVLVSTVPADAAAPLAGVLAGAPVLLDAIYDPWPTPLAVAVGAAGGRVVSGLQMLLHQAYAQVEQFTGRPAPRTQMAAALT
>NZ_AP022600.1|WP_115277324.1|4435228_4435621_+|prepilin-peptidase
MVVLAVWLGVLSVCDLRWRRLPNLLTLPGFAVILVIAGLDGRGAAAALGAAVLAAVYLAGFLLGGFGAGDVKLALGLGAATGAAGIEAWVPAALLAPVLTLLLALLMRSRVVPHGPSMCLATAVVLAIPA
>NZ_AP022600.1|WP_115277323.1|4435621_4437019_-|MFS-transporter
MTADDDSPSRLLIPTLVLLTTVTGVVSSLGAPLVPTIAAELGVSLGAAQWTLTVSMLAGAVATPLMGRVAVGARRRPVVLGGLLLVVAGTVLSAAASRYDGDLALALLIAGRAGQGIALGLAPLAMAVARDILPAARVAPVVAMLSVGTVAGAGLGYPLTALVAQAGGLSAAFWFGTALTAATLLLTWRQLPAAAPVPVPGVRLSEAVLLSAATVALLLGVSQTTTWGWTDLRTLSLFIVGAVTLAGWVATTLRHRDPLVDLRLAFSGGAAAPNITGLLAGTGMYMGLTLLMVLVQADTPSGWGLDQPVAVAGLMLVPYSVMSVLGSRVSLWAGTRMDPGKVLPVGCALYLLSTVQLAVAHDQVWQALLSMAVAGLGSGATFATLPVLLVRAVPAEQTSSALAFNQVLRYIGFSTGSAVGVTVLTLVSGPVPDEHGFTAAMAVNAAVWVLAIVVVVLRVRRDTQR
>NZ_AP022600.1|WP_068919795.1|4437091_4438288_+|chorismate-synthase
MLRWTTAGESHGRALVAVIEGMVAGVRVTSGDIADQLARRRLGYGRGARMKFEKDQVTVLAGVRHGSTLGGPIAVEIGNTEWPKWETVMASDPVAAEDLDVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVAREFLRQALGVEVVSHVIAIGASEPYAGPPPEAADLAAIDDSPVRAFDKAAEAAMIAEIEAAKKDGDTLGGVVEVVVRGLPIGLGSFTSGENRLDGQLAAAVMGIQAIKGVEIGDGFETARRRGSQAHDEMYPGPDGVIRSTNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDMATGDEAVAIHQRSDVCAVPAAGVVVETMVALVVARAVLDKFGGDSLAETRRNIESYLDAIAAHEPARASG
>NZ_AP022600.1|WP_115277322.1|4438305_4438992_+|shikimate-kinase
MAPKAVLVGMPGSGKSTIGRRLAKAMGVPLLDTDAKIVETAGRSIAEIFETEGEQGFRRIEEDVIRAALAEHDGILSLGGGAVTSPGVREALAGHTVVFLEIGAAEGIRRTTGGSVRPLLAGGDAAEKYRALMSERVPLYRRVATMRINTNRRNPGAVVRYLANRLENPAAARPARRRRRSPWRLTPSPPRCDRPEAGDAGGQAKPSVPPTPATPAALAARRAEARND

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Crispr_ID: NZ_AP022600_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_5

6062942-6063041

Orphan

Consensus_repeat	Method
GTGTGCGGTTTACTCCGCGACACGCCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_AP022600_5

>merge|NZ_AP022600|5|6062942-6063041|CRISPRCasFinder
GTGTGCGGTTTACTCCGCGACACGCCGTACAGCCGCAGCAGGGCACACATGTGTGCCGCGCCGCCGTCGACGTGTGTGCGGTTTACTGCGCGACACGCCG

>NZ_AP022600|5|5|6062942-6063041|CRISPRCasFinder
GTGTGCGGTTTACTCCGCGACACGCCG	TACAGCCGCAGCAGGGCACACATGTGTGCCGCGCCGCCGTCGACGT
GTGTGCGGTTTACTGCGCGACACGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_115281961.1\|6072805_6073159_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_AP022600.1\|WP_115280437.1\|6058824_6060762_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173839
NZ_AP022600.1\|WP_115280438.1\|6058034_6058748_-\|VIT1/CCC1-transporter-family-protein	unknown	unknown	gnl\|CDD\|376705
NZ_AP022600.1\|WP_115280428.1\|6069630_6071280_+\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_AP022600.1\|WP_115280426.1\|6073155_6073557_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_AP022600.1\|WP_115280442.1\|6052595_6054641_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_AP022600.1\|WP_115281963.1\|6060857_6061520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115280441.1\|6054705_6055152_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_AP022600.1\|WP_115280433.1\|6063174_6063411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115280431.1\|6063808_6065701_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_AP022600.1\|WP_115280435.1\|6062085_6062355_+\|cytochrome-C-oxidase-subunit-IV-family-protein	unknown	unknown	gnl\|CDD\|377083
NZ_AP022600.1\|WP_115280436.1\|6061516_6062086_+\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|239213
NZ_AP022600.1\|WP_115280429.1\|6069259_6069634_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_AP022600.1\|WP_115280440.1\|6055216_6056416_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NZ_AP022600.1\|WP_115280439.1\|6056948_6058004_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_AP022600.1\|WP_115280427.1\|6071266_6072652_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_AP022600.1\|WP_115280432.1\|6063412_6063742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022600.1\|WP_115281962.1\|6065705_6066968_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_AP022600.1\|WP_115280430.1\|6067038_6069069_+\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377378
NZ_AP022600.1\|WP_115280434.1\|6062470_6062782_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_115281961.1\|6072805_6073159_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	5.61074e-17
NZ_AP022600.1\|WP_115280437.1\|6058824_6060762_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173839	cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.	0
NZ_AP022600.1\|WP_115280438.1\|6058034_6058748_-\|VIT1/CCC1-transporter-family-protein	gnl\|CDD\|376705	pfam01988, VIT1, VIT family. This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron transporter VIT1.	5.35727e-73
NZ_AP022600.1\|WP_115280428.1\|6069630_6071280_+\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	8.92157e-125
NZ_AP022600.1\|WP_115280426.1\|6073155_6073557_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	3.45725e-40
NZ_AP022600.1\|WP_115280442.1\|6052595_6054641_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.75667e-61
NZ_AP022600.1\|WP_115280441.1\|6054705_6055152_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.22386e-17
NZ_AP022600.1\|WP_115280431.1\|6063808_6065701_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_AP022600.1\|WP_115280430.1\|6067038_6069069_+\|TPM-domain-containing-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	2.32824e-21
NZ_AP022600.1\|WP_115281962.1\|6065705_6066968_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_AP022600.1\|WP_115280436.1\|6061516_6062086_+\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|239213	cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.	1.04099e-59
NZ_AP022600.1\|WP_115280429.1\|6069259_6069634_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.36785e-11
NZ_AP022600.1\|WP_115280440.1\|6055216_6056416_+\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.79714e-94
NZ_AP022600.1\|WP_115280439.1\|6056948_6058004_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	1.09861e-82
NZ_AP022600.1\|WP_115280427.1\|6071266_6072652_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_AP022600.1\|WP_115280435.1\|6062085_6062355_+\|cytochrome-C-oxidase-subunit-IV-family-protein	gnl\|CDD\|377083	pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV. Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyzes the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.	2.72268e-06

>NZ_AP022600.1|WP_115280434.1|6062470_6062782_+|hypothetical-protein
MWGTTILAGVSTVLAASVMVAAPAAAEPDPLVPQPPSWCPGNPPGAISASGYGGYCEGRDFPDGTRLNAYAIGMFWQPMRCIVPNGTMTPPLAPPGGCGGIFG
>NZ_AP022600.1|WP_115280435.1|6062085_6062355_+|cytochrome-C-oxidase-subunit-IV-family-protein
MLRYVRNRAGVSWLILVVATVASWLVGADHGTGSLVAVVVLGIAAVKVRLVGLDFMELRQAPMPLRVGFQLYCVALWAGLSGLFVFLPG
>NZ_AP022600.1|WP_115280436.1|6061516_6062086_+|cytochrome-c-oxidase-subunit-3
MTSVATRRVPGEQGTWVFLFGDMLVFAVFFGTFLVERAAAPDAFDAGRQTLHLEVGLINTLVLLTSSLCVVVYLGALRAQDGATAARAAGTAVGCGALFVALKIYEYTSLTAAGHGPGAGDFYLYYFILTGLHLFHVCVGIAVLAALRSQARRTDLSSTRMAMIEGGACFWHLVDLLWIVLFPLLYLVS
>NZ_AP022600.1|WP_115281963.1|6060857_6061520_+|hypothetical-protein
MLVLYGTCFSGVAGMFPPLSPVASADDIAAFYANNKILVRLGVAGCMLTAVIALPFLATVVLRIRRIEGQWGMLSMTQLFAATIFVPALLFPFLIMAAAAFRPETRPAEITLALNDVFWLMFIGIVGTIVVQNITLAVASFVDGSDFPRWYGYFNLWVALLSLPGCVVVVFNDGPLAWHGVFAFYIPGLALTLWVFTTTYVLLRAISAQQRSEQSLAAVA
>NZ_AP022600.1|WP_115280437.1|6058824_6060762_+|acyl-CoA-dehydrogenase-family-protein
MTTTAEHLRNTLDGRWRDCKNDMRRELSGEIFKPHYTPNTVIARTKVAEQMRIMAAHGAAEDGFSKESGGNGDVGAAVTRIEMLAMSDLSLMVKAGVQWGLFGGAIENLGTERHHQAYVRKLIDLDVLGCFAMTETGHGSDVQSIETTASYDPGTEEFVINSPTPSSRKDYIGGAAETARVAAVFAQLITGGTNHGVHCFVVPIRDDAGNDLPGVTTSDCHYKGGLPGVDNGRIMFDHVRVPRENLLNKYADVAADGTYSSLIENPNRRFFTMLGTLIRGRVTVGGSAGAAARVALDIATRYALQRKQFSAPGGDDEVLIMDYLVHQRRLFPLIAKSYALQFAQNELVAKCHELQTADNPDAEEQRELESRAAGLKAANTWHATSAIQEAREACGGAGYLADNRLIALKADTDVFTTFEGDNHVLTQLVAKELLTAYADDIKTMSPVEWVRFAANFAGERVLKRTAAETIMQTILDTRQDNEEEGSLFNRGTQVAMFEDREQYMLASVARRLQGKAKEMSAFDAFNSVQDHVLHVAQAHIDRIILEAFVAGIDTCADKQAREVLNLVCDLYALSVIEADKAWFVEHRFLSTERAKAVTRAINDRCRKLRPHAELLVEGFGIPEPLRYAEMLHPEVPPSEPGVIPQ
>NZ_AP022600.1|WP_115280438.1|6058034_6058748_-|VIT1/CCC1-transporter-family-protein
MTEQTPLPHDYDHKHSDVSGGWLRAATFGAMDGLVSNTALIAGVGAGASADTVVLAGVAGLLAGAFSMALGEYTSVTTANEQIESEVVVERRAIRANPQGEKAELVQMLMQMGLTEPTATQATEELHRDEARATNFHLVQELGVDPTEKPSPWVAAGSSFVMFAIGAIVPLIPFLLGIESLWAGVGAGGVGLMVVGALASRFTGKPWHWASLRQLAFGGLAIAATYVVGHLIGVAVA
>NZ_AP022600.1|WP_115280439.1|6056948_6058004_-|esterase-like-activity-of-phytase-family-protein
MLRRILSIVAVAAVSGAPVAHAEQTGLTYLGKVEFPADTTYADTLVGGLSGISYNPVDQLYYIVSDDRSEHNPARFYTARIALSDNGIDDVQFVGTTPFGGLAADAPPDPEGIAVDPGRQRLYWSSEGARDVEGGLLLHPRVRIAGFDGAPLGEFELLPGLRVSPDEQGPRENKALEGLTLTPDGSAVFAAMEGPVYADGPLPDENAGALTRVTRYDAQTGLATAQFAYPLDPVTAGPGGDNGLSDLVALDDGTFLVLERGYGTHVKVRIYRAVVDGADDVLHRPSLQGEPVRAMTKTLLADLAAIPGVEPDNVEGLTLGPVLPSGRASVVLVADDNFSDSQTTQFLLFAL
>NZ_AP022600.1|WP_115280440.1|6055216_6056416_+|MFS-transporter
MLRQPRAVWAVAFASVVAFMGIGLVDPILKPIADNLDATPSQVSLLFTSYMAVMGVAMLITGVVSSRIGPKRTLLLGLVIIIAGAGLAGMSDTVLEIVGWRALWGLGNALFVATALATIVNSARGSVAQAIILYEAALGLGIAVGPLVGGLLGSISWRGPFFGVSVLMAVAVVVTALLLPATAPAARATSLLDPFRALRHRGLLGVAITALLYNFGFFTLLAFTPFPLDMDAHGIGLIFFGWGLALAFTSVVVAPRLQHRFGTVPVLVVNLVLMTATLGVMAVFTTSKPVLAASVIVAGLWIGVNNTLITETVMKAAPVERGVASAAYSFVRFAGAALAPWLAGVLGEQVSVHLPYWVGAGAVLLGAVVLFVSRRWLVGIDEPETGARLAEDEALANAS
>NZ_AP022600.1|WP_115280441.1|6054705_6055152_+|MarR-family-transcriptional-regulator
MPTASVSDTTALGADLLKVVARLNRFATQRTQLPLPWAQARLLSTIEDRGEARISDLAELDHCSQPTMTTQVRRLEDAGLVTRTADPGDARAVLIRITEAGVDVLARARIDRAAVIDPLLEQLTDADRAALSTAVDVMRQMLASAQNS
>NZ_AP022600.1|WP_115280442.1|6052595_6054641_-|ABC-transporter-ATP-binding-protein
MTSSSAATVPKTARSLRPAETAQASVMAALCAATAIIAVVVPFAAALSLLGTVPMALLAYRYRVRVLVAAAVAAGIIAFLIAGLGGFMTVANCAYIGGLAGVVRRRGRGTPTVVFASFVAGVLFGIFVVGALAVLSRLRHLIFASMTANVDGTAAIMARVPALEQPAQDFKDYFQLALSYWPWLLMGYAIFAIMSVTLLGWWALSKVLHRLRGIPDVHKLDQDESAQTAAPVPVRLRDVSFRYPNADHDALAPVSLEIGAGEHVAVTGANGSGKTTLMLLLSGRQPTSGVIERDGGVGLGALGGTAVIMQHPESQVLGTRVADDVVWGLPPGTTTDVEALLTEVGLAGFEERDTGGLSGGELQRLAVAGALARRPTMLIADEVTSMVDQAGREALLDVLSGLSERRNMALVHITHYNNEADSADRAINLSASTDNTAMVETAAAPAATVGTGGQPAGTPVIEIDRVSHEYGTGTPWAKPALQDISFAVHKGDGVLIHGGNGSGKSTLAWIMAGLAVPTVGTALVDGQPAHERVGSVALAFQAARLQLMRARVDLEVASAAGFDPNDTRRVHTALNAVGLDASLARRRTDQLSGGQMRRVVLAGLLAREPKALILDEPLAGLDAESQAGLLRLLEDLRKNQGLTVVVISHDFVGLEELCPRILHLRGGVMEPASTTSAGGMS
>NZ_AP022600.1|WP_115280433.1|6063174_6063411_+|hypothetical-protein
MIRIVVVLGVGYVLGAKAGRRRYEQIAGTYKAVTGHPAAKAALDAGRRKIAQQVSPDPGMVKLTEIDNTTSVIGPEKY
>NZ_AP022600.1|WP_115280432.1|6063412_6063742_-|hypothetical-protein
MGSTRRMVAVGAFAAAAVAAPLCAALSTPEPVSTQAECLAWLGARGTGECIGNSLGSQGPTLNGTGVGPTSPGPAMGGIGVGTPGVGIGNGGFYTSPLLPGTSVNVPLG
>NZ_AP022600.1|WP_115280431.1|6063808_6065701_-|DNA-primase
MAGRISDRDIAAIREKTRIEDIVGDYVQLRRAGADSLKGLCPFHDEKSPSFHVRPNHGHFHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADKINYTITYTGASTTNVQRDRGSRSRLIAANAAAAEFYAQQLESPEAATARQYLTERNFDAAAARLFGCGYAPSGWDTLTKHLRRLGFEFKELEAAGLSREGKRGPMDRFHRRLLWPIRGSSGEVIGFGARRLFDDDQNQAKYVNTPETTLYKKSNVLFGIDQAKRDIARGHQAVVVEGYTDVMAMHLAGVTTAVASCGTAFGDEHLSMLRRLMMDDKFFRGELIYVFDGDAAGRAAALKAFEGEQNLAGQSFVAVAADGMDPCDLRLKHGDTALRDLVARRTPLFEFAIRTALAESDLDTAEGRVAALRRCVPMVAKIKDPTLRDEYARQLAGWVGWDDVAQVIRRVREHAKDPRAQSDSKRAAPARKAPEATRPNPRDPTLWPQREALKMALQYAALAGPVFDALTVESFTHPGYAAVRTAIEAAGGTASSGGGAQWIDLVRQHAAAPAVAALITELSVEAVAATDEEKLPRYISSVLARLQEVWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLQQASGDDLTA
>NZ_AP022600.1|WP_115281962.1|6065705_6066968_-|deoxyguanosinetriphosphate-triphosphohydrolase
MSTSEQDHYSAFDRERQVPEAPKSAAMPGTNTEHRGDFARDRARVLHCVAFRRLADKTQVVGPRESETPRTRLTHSLEVAQIGRGMAIGLGCDPDLVDLAGLAHDIGHPPYGHNGERALDEIAKIFGGFEGNAQNFRILTRLEPKVLDAQGRSAGLNLTRAALDAVAKYPWFRGDRKKFGFYDDDAAGAHWVRSGAPADRACLEAQVMDWADDVAYSVHDVEDGVISGRIDLRVLADADAAASLARLGGEAYQADDLLEAAQRLSELPVVAAVGKYDGTLAASVALKRLTSELVGRFANAAITETRAVAGGGPLGRFRADLHVPALVRAEVAVLKILALQFIMSDHRHLGIQADQRNRIHEVALALWAQAPGSLDPQFAPEFIAAADDGARLRVVIDQIASYTESRLERVHEARSPRPLD
>NZ_AP022600.1|WP_115280430.1|6067038_6069069_+|TPM-domain-containing-protein
MRIVRLLSLVLVAVTAGFLTAPATAAEPPLRVPAQITDTAGALTDSEVEDVQAALDTLYDDKRVQLFVVFVETFDGQSGQTWADNTWRLSGFGDDDALLAVATLDREFSFAVDGSTQSRAAAVQRDLIEPALRESDWAQAAIGAAEGLGADAAPSSPGGGTGVSWVGFLVVFGVIVALGLALWVWGRRRRSKRRQAEFAAAQRVDPTDPNALASVPIQALDELSKAIVVDVDNAVRTSEGELALAVEEFGPTDTAPFRTALENAKKTLAQAFNVRQTLDDAIPESPLQRRELLTRVVVAAARADRELETQSDAFEKLRDLVINATDRLDTLTQQMVALTARLEPAAATLTRLGQQYSTTALASVAGNVDQARQRLGFADQHISSARALVARPAGDQAGLIDDIHGAEAALAQAQTLLDGIDTAGSDINRAISGLPAALADIQSGIEAANELLGGEAVPRAAELTAARDAATAAVAAANTDGAADPLGVFTAVTKADADLDAILAAVQQQQQEAEHQARLLEQSLFTARSRVKAVSEFIDTRRGSVGPDARTRLSEAGRQLEAAEAKQRTAPAEAIAHANGAAVLAAQAQSLANNDVQNAQSHYTGQYGNNSGDLGAVIGGILIGSVLNGGFSGGWGTQRGGSWGSGFGGGRSVGRPSSFGGSSRSSSRRYSGGGRF
>NZ_AP022600.1|WP_115280429.1|6069259_6069634_+|helix-turn-helix-transcriptional-regulator
MPQRRPAAAEQPLYEVKANLFKALAHPSRIRVLEILAARGGPTSVSDLLDEIGIEPTLLSQHLAVLKRHHVVSADRVGNAVFYELAHPKIPELLVIARTFLADTLGAQRAQLETLRTLPPLPHA
>NZ_AP022600.1|WP_115280428.1|6069630_6071280_+|SulP-family-inorganic-anion-transporter
MRSARALLPEVADYRDLPRSWRRDIVAGITVAVVALPLALAFGISSGVGAAAGLITAVTAGLVAAVFGGSHVQVSGPTGAMAVVLAPIVAEHGLGSIAVVTIMAGLLVLIAGITGLGRAVTFIPWPVIEGFTLGIAAIIFLQQVPAALGAVAPSGQRTLAAAWQVVAQTNWQSAGRTLAIVGLVALLMLALPRVHRGIPESLTAVVVATVLVSVVGISVASIGELPSHLPAPSIPTADLGTLRSLTGAALAIAALAAIESLLSARVAATMSDSGPYDPDRELVGQGLASVTSGVFGGIPATGAIARTAVNVRAGARTRVSAIVHSVVLLAVVYLATGPVAAIPLAALAGVLMVTSFRMISAATVRKILRSTRSDALTFIVTAAVTVCFDLIEAVQIGVLIAAFFALRNVARRAVVVREQLPGHSQPGDQHVAVLRLDGAMFFGAAERISAAITESGDSETTVVIIRMSQLGMLDATGAHTLVRITEELEKRGITVIIKGVRPEHLTLLSNVGLFETLRHENHLMDSLDEAIAHARSHVRALPAGPVSSP
>NZ_AP022600.1|WP_115280427.1|6071266_6072652_-|glycine--tRNA-ligase
MASVIDTIANLAKRRGLVYQSGEIYGGTKSAWDYGPLGVELKENIKKQWWRSVVTSRDDVVGLDSAIILPRQVWVASGHVAVFNDPLVECLNCHKRHRQDHMQEAYALKKGLDDPDAVPMSEIVCPDCGTKGQWTEPRDFNMMLKTYLGPIESEEGLHYLRPETAQGIFVNFANVVTTSRKKPPFGIGQIGKSFRNEITPGNFIFRTREFEQMEMEFFVEPSTAGEWHKYWIETRLQWYVDLGINPDNLRLYEHPKEKLSHYSDGTTDIEYKFGFAGNPWGELEGIANRTNFDLSTHSEHSGVDLSFYDQANDTRFVPYVIEPAAGLTRSLMAFLVDSYHEDEAPNAKGGVDKRTVLKLDPRLAPVKAAVLPLSRHADLSPKARDLAAELRQSWNIEFDDAGAIGRRYRRQDEIGTPFCVTLDFDSLEDHAVTIRERDAMTQERVAISGVSNYLAVRLKGC
>NZ_AP022600.1|WP_115281961.1|6072805_6073159_+|winged-helix-turn-helix-transcriptional-regulator
MSTATHDELDHQHGSSTSITLPSREILDGAGEILRALAAPVRIAIVLQLNESQRCVHELVDALGVPQPLVSQHLRILKAAGVVAGERAGREVMYRLVDHHLAHIVVDAVTHAGEGHR
>NZ_AP022600.1|WP_115280426.1|6073155_6073557_+|transcriptional-repressor
MTGTEVRTRATRQRAAITELLDTLDEFKSAQELHDELRRRGENIGLTTVYRTLQAMSVADQVDTLRTDTGESVYRRCSTHHHHHLVCRDCGATVEVEGPEVETWAAAVAATHGFTDVSHTVEIFGRCGACAVS

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Crispr_ID: NZ_AP022600_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022600_6

6157466-6157549

Orphan

Consensus_repeat	Method
CACCGCCTGCTGTTGTTGCTGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022600_6

>merge|NZ_AP022600|6|6157466-6157549|CRISPRCasFinder
CATCACCGCCTGCTGTTGTTGCTGCTGTTGCTGGCTCTGCGGTCCCTGCTGCTGACTCAGCACACCGGCCTGCTGTTGTTGCTG

>NZ_AP022600|6|6|6157466-6157549|CRISPRCasFinder
CATCACCGCCTGCTGTTGTTGCTG	CTGTTGCTGGCTCTGCGGTCCCTGCTGCTGACTCAG
CACACCGGCCTGCTGTTGTTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022600.1\|WP_068917911.1\|6159354_6159615_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_AP022600.1\|WP_115280369.1\|6165018_6165741_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238141
NZ_AP022600.1\|WP_163908545.1\|6148897_6149548_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_AP022600.1\|WP_115280377.1\|6150289_6151441_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_AP022600.1\|WP_115280368.1\|6165730_6166387_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_AP022600.1\|WP_115280372.1\|6156482_6157460_-\|alpha-E-domain-containing-protein	unknown	unknown	gnl\|CDD\|225189
NZ_AP022600.1\|WP_115280378.1\|6149552_6150218_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_AP022600.1\|WP_115280367.1\|6166413_6166800_-\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_AP022600.1\|WP_115280370.1\|6164176_6165016_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_AP022600.1\|WP_115281954.1\|6159688_6160675_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|236130
NZ_AP022600.1\|WP_115280375.1\|6152644_6153628_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
NZ_AP022600.1\|WP_115280376.1\|6152080_6152509_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341391
NZ_AP022600.1\|WP_115280371.1\|6162210_6162996_-\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NZ_AP022600.1\|WP_115280373.1\|6155642_6156482_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NZ_AP022600.1\|WP_115280374.1\|6153665_6154499_+\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|234602
NZ_AP022600.1\|WP_115281955.1\|6151463_6151982_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_AP022600.1\|WP_115281953.1\|6160687_6162184_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_AP022600.1\|WP_068917908.1\|6155331_6155535_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_AP022600.1\|WP_115281952.1\|6163143_6164187_+\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|226326
NZ_AP022600.1\|WP_115280366.1\|6166796_6167438_-\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611

Protein	Function_ID	Function_description	E-value
NZ_AP022600.1\|WP_068917911.1\|6159354_6159615_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.30052e-28
NZ_AP022600.1\|WP_115280369.1\|6165018_6165741_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	3.38628e-06
NZ_AP022600.1\|WP_163908545.1\|6148897_6149548_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	6.574e-11
NZ_AP022600.1\|WP_115280377.1\|6150289_6151441_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_AP022600.1\|WP_115280368.1\|6165730_6166387_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.77419e-56
NZ_AP022600.1\|WP_115280372.1\|6156482_6157460_-\|alpha-E-domain-containing-protein	gnl\|CDD\|225189	COG2307, COG2307, Uncharacterized protein conserved in bacteria [Function unknown].	4.26031e-107
NZ_AP022600.1\|WP_115280378.1\|6149552_6150218_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	1.82935e-14
NZ_AP022600.1\|WP_115280367.1\|6166413_6166800_-\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	4.99084e-43
NZ_AP022600.1\|WP_115280370.1\|6164176_6165016_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	2.16095e-91
NZ_AP022600.1\|WP_115281954.1\|6159688_6160675_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|236130	PRK07914, PRK07914, hypothetical protein; Reviewed.	5.39556e-167
NZ_AP022600.1\|WP_115280375.1\|6152644_6153628_+\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	5.42466e-147
NZ_AP022600.1\|WP_115280376.1\|6152080_6152509_-\|CBS-domain-containing-protein	gnl\|CDD\|341391	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.84886e-47
NZ_AP022600.1\|WP_115280371.1\|6162210_6162996_-\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	5.86051e-28
NZ_AP022600.1\|WP_115280373.1\|6155642_6156482_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.08674e-47
NZ_AP022600.1\|WP_115280374.1\|6153665_6154499_+\|ribonuclease-Z	gnl\|CDD\|234602	PRK00055, PRK00055, ribonuclease Z; Reviewed.	2.11624e-87
NZ_AP022600.1\|WP_115281955.1\|6151463_6151982_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	9.17311e-06
NZ_AP022600.1\|WP_115281953.1\|6160687_6162184_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.74865e-42
NZ_AP022600.1\|WP_068917908.1\|6155331_6155535_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.0848e-32
NZ_AP022600.1\|WP_115281952.1\|6163143_6164187_+\|dihydrodipicolinate-reductase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	6.28652e-50
NZ_AP022600.1\|WP_115280366.1\|6166796_6167438_-\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	4.58268e-101

>NZ_AP022600.1|WP_115280372.1|6156482_6157460_-|alpha-E-domain-containing-protein
MLARNAESLFWIGRYVERADDLARILDVTVHQLLEDSSVDPDHASRVLLRVLGMRPPQEALDVWSLTDLVAFSRDTDGGCSIVEAISAARENARGAREVTSTEMWECLNATYNALGERERAAKRLGPHEFLGYVENRAAMFAGLADSTLSRDDGYRFMVLGRAIERVDMTVRMLLARVGDSASSPAWVTVLRSAGAHDTYLRTYRGVLDAGRVVEFMLLDRLFPRSVFYSLRVAEHSLDELLNRPHNRLGATAEAQRLLGRARSELEFLRPGLLLEELEQRLAGLQRMCFDVGEALALQYFHSAPWVAWTDAGRNGSLVIEEGEV
>NZ_AP022600.1|WP_115280373.1|6155642_6156482_-|transglutaminase-family-protein
MWRMRVVHSTGYAYKSPVTASFNEARLTPRSDSRQNVILNRVETVPATRSYRYVDYFGTAVTAFDLHAPHAELEVTASSVVETDRQERPEVKVSWDDLASEAVIDRFDEYLTPTHYTPASKRIERVGRRIAKYHEPEEAVIEAARWVQGELKYVPGTTGVHSSGLDALREGKGVCQDFAHLTLILLRGMGIPARYVSGYLHPKPKAKVGDTIDGQSHAWLQAWTGSWWNYDPTNDAEINEQYISVGVGRDYADVTPLKGIYSGEGSTDLDVIVEITRLA
>NZ_AP022600.1|WP_068917908.1|6155331_6155535_-|cold-shock-protein
MAQGTVKWFNGEKGFGFIAPDGGAADVFVHYSEISGSGFRTLEENARVQFEVEQGAKGPQAVGVTTI
>NZ_AP022600.1|WP_115280374.1|6153665_6154499_+|ribonuclease-Z
MIEVMLLGTGSPLPDARRAGPSTLVRAAGQTFLVDCGRGVLMRLTAAGVGANGLSALLLTHLHSDHIAELGDVIITRWISTFTPDPPPLQIIGPPGTAAVVDAVLAAFGFDIGYRIAHHADLTAPPPLQVHEYTGGVVWNADGVRITAGATDHRPVEPTIGFRVEADGHSVVLAGDTVPCAGLDELTSGADALVHTVIRKDLVAQMPMQRIKDILDYHSSVEQAAATAARAGVGTLILTHYVPALVPGQEDQWRALAATEFGGRVELGDDMHTVQVG
>NZ_AP022600.1|WP_115280375.1|6152644_6153628_+|aldo/keto-reductase
MSVTLGDQLTVSDLGFGAMALTPVYGQVDDAESLATLNHCLDVGVTFIDTADVYGGGDNERLIAALLADRRDEVVLATKFGITGNPSAGDRSTRGDAAYVHQAVDASLKRLGTDVIDLYYMHRRDLAVPIEETVGAMAELVRAGKVRHLGLSEVTADELRAAVAVHPIAAVQSEWSIWSRDVEANVVPAAAELGVGFVPYSPLGRGFLTGTVRSTADLGQFRGALPRFSDSALQSNLAVVEVISAVAQQVDATAAQVALAWLRYRAHALGVASVPIPGTRRAARVDENLASLNVTLTGEHLDALDAAGAQVSGQRFADPTWISAGRE
>NZ_AP022600.1|WP_115280376.1|6152080_6152509_-|CBS-domain-containing-protein
MRIADVLRAKGDAVATITAHTSVGALLNELVLHNIGAMVVVSPDGVIGIVSERDVVRKLHELGADLLRRPVADIMTTTVATCAPTDSVDSLSALMTTNRVRHVPVMDGGRLAGIVSIGDVVKTRMEELQAEQAQLQAYITQG
>NZ_AP022600.1|WP_115281955.1|6151463_6151982_-|GNAT-family-N-acetyltransferase
MTWMLPDPARRSAGLPRMFATMTRHHFLSQTGAEIALDGSGIVAAALWDPPDCWQESRLEGLLMMPGFLRAFGSRISVGQEVSDLMKQHHPEEPHWYLSVIGSDPAHRGAGFGQALMASRLDRVDAEHAPAYLESTKADNVPYYQRFGFEVTREIALPRGGPTMWAMWRRPR
>NZ_AP022600.1|WP_115280377.1|6150289_6151441_+|acyl-CoA-dehydrogenase
MDSSFDLFQLPPEHEELRAAIRGLAEKEIAPHAADVDEQSRFPDEALAALNASGFNAVHIPEEYGGQGADSVAACIVIEEVARVDASASLIPAVNKLGTMGLILRGSDDLKKKVLPDLVDGGMASYALSEREAGSDAAGMKTRAKADGDGWILNGTKAWITNGGKSTWYTVMAVTDPDKGANGISAFVVHLDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRMIGDPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTRDRKQFGKSISQFQGVQFMLADMAMKVEAARLMVYSAAARAERGEGELGFISAASKCFASDIAMEVTTDAVQLFGGAGYTVDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLK
>NZ_AP022600.1|WP_115280378.1|6149552_6150218_-|TetR/AcrR-family-transcriptional-regulator
MSDTGARDRLVSAAMSLFEEHGYDAVTMDAIAARAGVGRTTLFRLFGSKEGLIFPDHDALLQQLEQRLAAAPGGAAALSAVIAASNEVFAYYLREGELARARYRLTNTVSALRDREIASVGRYIQLFRQYLMAQSGDGTDAALRADLIATAVVTAHNHVLRRWLRGDIVSPEPELSDAMATVSALFGRLPENRTAVLAFETDEPLESVLPRLRQVLAQPPR
>NZ_AP022600.1|WP_163908545.1|6148897_6149548_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MLLVMATQWKSFQQVLKAAEHVVFTEAPKIIKGLQNPQAVQRNISNGLQRGLAQGIKMGIDVLAANALEQQAAQKRAAIPAGRPVTSNAVPSAHRARKIVYAPDLDGRADPGEIVWTWVVFEDDPSRGKDRPVLVVGRDHKTLLGLMLSSQDHHAQDPEWIGIGAGPWDHDGRPSWVRLDRVLDVPEEGIRREGAILERTTFDLVAARLRAEYSWS
>NZ_AP022600.1|WP_068917911.1|6159354_6159615_+|30S-ribosomal-protein-S20
MANIKSQQKRILTNERARLRNQSVKSALRTAVRGFREAVEAGDKEKAGELLVSTSRKLDKAASKGVIHKNQAANKKSALALALNKI
>NZ_AP022600.1|WP_115281954.1|6159688_6160675_-|DNA-polymerase-III-subunit-delta
MSPQVNGLHLILGEEELLVERAVTAVLAQARKLAGTHASATNDVPVDRLRAGEVSTSELAELLSPSLFADERVVVLEAAAEAGKDAAALIASVAGELPEGTMLVVVHSGGGRAKALAGQLKELGAQVHPCAKITKAGERIDFVRAEFRALRVKVDEETVTALIDAVGSDIRELASACSQLVADTDGRVDVASVRRYHSGKAEVKGFDIADKAVLGDVEGAAEALRWAMLSGEPRVVLADALAEAVHTIARVGPLSGDPYRLASELGMPPWRIQKAQKQSRRWSRDGVADAIRLVAALNADVKGAAADADYALESAVRRVAEIAAAGRG
>NZ_AP022600.1|WP_115281953.1|6160687_6162184_-|ComEC/Rec2-family-competence-protein
MRLVPAALTCWAVTAAGIVWQAGVAATVTGAVGAGVAALLRRRTPAGPRRAVLTAVLAAALVGLGFGAAITLRDNDVRQHPILASVGRQAEVTVLVTETPRVLGSGRLLMRADLRLVGGAEMRGRVVVFASADAFGAVSAGQSVRFRTRIAPPTRRDLTVAVLTASGRPTVGAATPVQRGAQRLRSRLAEAGRTVLPAEAAALLPALVLGDTSMLPPELVTDFRTAGLTHLTAVSGANVTIVCGAVLLSAAVVGLRVAVLLAAVVLVAFVVVVQPTASVLRAAVMGAITLLAVVSARRRQAIPALAATVIGLLALAPQLAVDIGFALSVSATAALVVLAPLWSRRLVARGWPKPLADAICVALAAQLVTAPLIAGLSGSLSLVAVVANVLVAPVIAPITVLGTAAAAVAPVLPAAGGLLIRFTGPELWWLLQVAHGGAAVPHAAVPVPSGPGGALMMAAAVMASVVLWRRRPFRLVMAAAAVCLLAWAVSAGLGVGGT
>NZ_AP022600.1|WP_115280371.1|6162210_6162996_-|ComEA-family-DNA-binding-protein
MPTELPTQRLRRRLAEPSDETAEPAADDPNELLPRWLPDAQPRSWWETARADPGRTGALALGAVAAIAVLITVFTLIRDEPPPVTAANLPAVEMVSSAAPRPQDSSVVVSVVGLVHKPGLVTLTAGARVADALAAAGGVTEGADTLGLNMARRVADGEQVVVGIAPLPGQPPALGSSVAADPGTPAETPGPAGATDAAGPVDLNTATAEQLDALPGVGPVTAAAIIAWRDANGRFTDVEQLGEVDGIGPARLDKLRDRVRV
>NZ_AP022600.1|WP_115281952.1|6163143_6164187_+|dihydrodipicolinate-reductase
MTATIKVLQWTTGNIGRRSLHAIIGRPDLELVGVYAHGADKVGRDAAELAGWPEPTGVLATNDIDALLSLGADACCYNPLWPSVDELVALLSNGVNVCTSAAWITGGKQSPADRERILIACEAGKSTIFGNGAHPGMTNMVGMVLSGSCERVDEIRITESVDCSTYESAGTQSAMGFGQDPETPDLAESVRRESEVFAESAAMMADAIGAQLDRMTFDVQFTAATGDTDLGFMTIPAGTVGSVYGYHRGWVGERNVVSVGFNWTMGDHVVPPKPLEHGHVIQVFGLPNMRTVLHCLPPRDWTEPGFMGLGMIYTAMPVTNAVPAVVAAAPGIATLKDLPPVTGRFMP
>NZ_AP022600.1|WP_115280370.1|6164176_6165016_-|DegV-family-protein
MAVIVVTDSSARLPAELAQAHGIRVVPLHILVDEEDLRDGVDEIPDDIHERTASTAGATLVELGAAYSHALADSGGDGVLAVHLSSALSSTFGAAQQAAQQFGGKVRVIDSRSTAMGTGFVALAAARAAAEGKGLDEVGAAAEAGVRNSHGFIVVHRLDNLRRSGRIGGAAAWLGTALSLKPLLRIEDGKLVLAQRVRTASKAVMAMQDKVCELIGDGPAELAVHHVADPAAADELASALSSRLPQCATPVVTDLGPVLALHVGAGALAVVVSLPEITA
>NZ_AP022600.1|WP_115280369.1|6165018_6165741_-|SGNH/GDSL-hydrolase-family-protein
MSSERTLLVFADSLAYYGPTGGLPADDPRIWPKLVADELGWRLELIGRIGWTCRDVWWAATQDPRSWAALPHAGAVVFATGGMDSLPSPLPTALREMIRYVRPPRLRRWVRDGYGWVQPRLSPYARAALPPALSVEYLEMTRGAIDFNRPGIPMVASLPSVHVAATYGKAHHGRPGTVAALTAWAAEHDIPLVDLKEAVAEHIYAGRGNPDGIHWNFEGHRAVADLMLEALAKAGVRPGV
>NZ_AP022600.1|WP_115280368.1|6165730_6166387_-|histidine-phosphatase-family-protein
MLRHGQTEWNAGSRMQGQIDTDLTELGRAQAVAAAEVLAKRQPLRIVSSDLRRAFDTAMALGERTGLTVAVDERLRETHLGDWQGLNHLQVDEMAPGARLAWRDDARWAPHGGESRVDVAARSLPVVTELVAGQPEWGSDGDGDADRPVVLVAHGGLIAALTAGVLDLPVDTWPVLGGMGNASWVQLSGHSAADAQPQDIKWRLDVWNASAQVANDVL
>NZ_AP022600.1|WP_115280367.1|6166413_6166800_-|ribosome-silencing-factor
MTASDEAITMAEVAARAAAAKIAEDVVVIDVSGQLVITDCFVLASGANDRQVNAIVDEVEEKMRLAGHKPARREGTREGRWVLLDYIDIVVHVQHRDERDFYALDRLWKDCPVIPVDLDVEVDTEADE
>NZ_AP022600.1|WP_115280366.1|6166796_6167438_-|nicotinate-nucleotide-adenylyltransferase
MGGTFDPIHHGHLVAASEVADLFELDEVVFVPTGQPWQKAGRRVTAAEDRYLMTVIATASNPRFSVSRVDIERGGKTYTTDTLRDLQALNPDADLYFITGADALASILSWQNWEDLFSMARFVGVSRPGFELNGKHIEAAQAELPSEALSLVEIPALAISSTDCRRRAEAARPIWYLVPDGVVQYVSKRGLYQHESDTASGPRLAETTNQEIV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3952321 : 3959986

Bacillus_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115277635.1\|3952321_3953218_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	4.0e-06	30.1
WP_115277634.1\|3953183_3954335_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.7e-54	37.7
WP_115277633.1\|3954373_3955408_-	DNA polymerase IV	I6RSM4	Salmonella_phage	1.7e-13	25.3
WP_068916216.1\|3955412_3956018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_115277632.1\|3956104_3956662_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.9e-09	33.6
WP_068916218.1\|3957111_3957354_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	9.9e-21	62.3
WP_068916219.1\|3957389_3957836_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	1.0e-10	31.1
WP_115277631.1\|3957820_3959986_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.9e-208	51.0

DBSCAN-SWA_2

5103561 : 5113612

Gordonia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115281118.1\|5103561_5105769_+	acyltransferase	A0A166XZF2	Gordonia_phage	8.7e-71	31.0
WP_115281117.1\|5105665_5107963_+	acyltransferase	A0A166XZF2	Gordonia_phage	1.9e-60	29.0
WP_115281116.1\|5107955_5110082_+	acyltransferase family protein	A0A166XZF2	Gordonia_phage	5.1e-68	32.3
WP_115281115.1\|5110095_5111175_+	NAD-dependent epimerase/dehydratase family protein	M1HHF3	Acanthocystis_turfacea_Chlorella_virus	7.8e-17	26.1
WP_115281114.1\|5111171_5112167_-	GDP-mannose 4,6-dehydratase	A0A1V0SAI6	Catovirus	3.6e-32	32.5
WP_115282084.1\|5112229_5113612_-	nucleotide sugar dehydrogenase	A7IV99	Paramecium_bursaria_Chlorella_virus	1.5e-17	23.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022600

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection