CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022563	Mycolicibacterium duvalii strain JCM 6396	4 crisprs	DEDDh,csa3,c2c9_V-U4,cas4,WYL,cas3,DinG	2	6	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022563_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022563_1

2243189-2243303

Unclear

Consensus_repeat	Method
GCCGCCGTCGCCGCCGTCGAGCCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP022563_1

>merge|NZ_AP022563|1|2243189-2243303|PILER-CR
GCCGCCGTGGCCGCCGGCGATCCCGACGGTGCCGTCCGCGCCGTGTCCGCCGTCGCCGCCGTCGCCGGTCGTCGCGAACAGTCCGGCCCGGCCGCCGTCGCCGCCGTCCTGCCCG

>NZ_AP022563|1|1|2243189-2243303|PILER-CR
GCCGCCGTGGCCGCCGGCGATCCCG	ACGGTGCCGTCCGCGCCGTG
TCCGCCGTCGCCGCCGTCGCCGGTC	GTCGCGAACAGTCCGGCCCGGCCGCC
GTCGCCGCCGTCCTGCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022563.1\|WP_098001883.1\|2245446_2246415_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_AP022563.1\|WP_098001885.1\|2246702_2247149_+\|DUF3099-domain-containing-protein	unknown	unknown	gnl\|CDD\|378630
NZ_AP022563.1\|WP_098001875.1\|2235718_2236471_-\|DUF3710-domain-containing-protein	unknown	unknown	gnl\|CDD\|378867
NZ_AP022563.1\|WP_098001889.1\|2250440_2251430_+\|PAC2-family-protein	unknown	unknown	gnl\|CDD\|378251
NZ_AP022563.1\|WP_043408120.1\|2237473_2237776_-\|DUF4193-domain-containing-protein	unknown	unknown	gnl\|CDD\|379391
NZ_AP022563.1\|WP_098001880.1\|2243894_2244677_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001888.1\|2249085_2250135_-\|DUF4192-domain-containing-protein	unknown	unknown	gnl\|CDD\|379390
NZ_AP022563.1\|WP_098001874.1\|2234474_2234846_-\|OB-fold-nucleic-acid-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239934
NZ_AP022563.1\|WP_098002041.1\|2237962_2238616_+\|envelope-integrity-protein-Cei	unknown	unknown	gnl\|CDD\|379163
NZ_AP022563.1\|WP_098001886.1\|2247296_2248256_+\|sigma-70-family-RNA-polymerase-sigma-factor-SigB	unknown	unknown	gnl\|CDD\|181169
NZ_AP022563.1\|WP_098002040.1\|2234983_2235703_+\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001881.1\|2244725_2245094_-\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|377607
NZ_AP022563.1\|WP_098001887.1\|2248387_2249080_+\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240
NZ_AP022563.1\|WP_098001877.1\|2236980_2237454_+\|DUF3093-domain-containing-protein	unknown	unknown	gnl\|CDD\|378627
NZ_AP022563.1\|WP_098001878.1\|2239580_2240360_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_AP022563.1\|WP_098001882.1\|2245227_2245419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001876.1\|2236490_2236955_-\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_AP022563.1\|WP_098001879.1\|2240540_2242043_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235640
NZ_AP022563.1\|WP_098001884.1\|2246404_2246641_-\|DUF3039-domain-containing-protein	unknown	unknown	gnl\|CDD\|378609
NZ_AP022563.1\|WP_098002042.1\|2238623_2239478_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817

Protein	Function_ID	Function_description	E-value
NZ_AP022563.1\|WP_098001883.1\|2245446_2246415_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.89379e-48
NZ_AP022563.1\|WP_098001885.1\|2246702_2247149_+\|DUF3099-domain-containing-protein	gnl\|CDD\|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.39789e-31
NZ_AP022563.1\|WP_098001875.1\|2235718_2236471_-\|DUF3710-domain-containing-protein	gnl\|CDD\|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	2.72683e-68
NZ_AP022563.1\|WP_098001889.1\|2250440_2251430_+\|PAC2-family-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	2.00528e-49
NZ_AP022563.1\|WP_043408120.1\|2237473_2237776_-\|DUF4193-domain-containing-protein	gnl\|CDD\|379391	pfam13834, DUF4193, Domain of unknown function (DUF4193). This domain of unknown function contains four conserved cysteines and a conserved histidine, including a CXXXXH motif.	1.64678e-59
NZ_AP022563.1\|WP_098001886.1\|2247296_2248256_+\|sigma-70-family-RNA-polymerase-sigma-factor-SigB	gnl\|CDD\|181169	PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed.	0
NZ_AP022563.1\|WP_098001888.1\|2249085_2250135_-\|DUF4192-domain-containing-protein	gnl\|CDD\|379390	pfam13830, DUF4192, Domain of unknown function (DUF4192).	9.90946e-67
NZ_AP022563.1\|WP_098001874.1\|2234474_2234846_-\|OB-fold-nucleic-acid-binding-domain-containing-protein	gnl\|CDD\|239934	cd04488, RecG_wedge_OBF, RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched chain substrates.	2.17052e-10
NZ_AP022563.1\|WP_098002041.1\|2237962_2238616_+\|envelope-integrity-protein-Cei	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	6.46739e-15
NZ_AP022563.1\|WP_098001881.1\|2244725_2245094_-\|DUF952-domain-containing-protein	gnl\|CDD\|377607	pfam06108, DUF952, Protein of unknown function (DUF952). This family consists of several hypothetical bacterial and plant proteins of unknown function.	1.50842e-37
NZ_AP022563.1\|WP_098001887.1\|2248387_2249080_+\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	8.82181e-50
NZ_AP022563.1\|WP_098001877.1\|2236980_2237454_+\|DUF3093-domain-containing-protein	gnl\|CDD\|378627	pfam11292, DUF3093, Protein of unknown function (DUF3093). This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.	6.23753e-47
NZ_AP022563.1\|WP_098001878.1\|2239580_2240360_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.12708e-30
NZ_AP022563.1\|WP_098001876.1\|2236490_2236955_-\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	9.75989e-71
NZ_AP022563.1\|WP_098001879.1\|2240540_2242043_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0
NZ_AP022563.1\|WP_098001884.1\|2246404_2246641_-\|DUF3039-domain-containing-protein	gnl\|CDD\|378609	pfam11238, DUF3039, Protein of unknown function (DUF3039). This family of proteins with unknown function appears to be restricted to Actinobacteria.	6.87535e-31
NZ_AP022563.1\|WP_098002042.1\|2238623_2239478_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	3.49359e-81

>NZ_AP022563.1|WP_098001879.1|2240540_2242043_+|RNA-polymerase-sigma-factor
MTAPRDRTTERVYVAATKASPATDEPVKRTATKTPAKKAAPAKSANGSAPAKKAAKAAPAKSAKSRAAKSADAPASRGRAKKATASATPEAADDDLAGGAAEDLDAEPGDDLEAEDTDIDLADIDVDDAGDSSEEESADGDADATPKAGAAAKTDDADDDIDEPSDKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMAEYAEKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
>NZ_AP022563.1|WP_098001878.1|2239580_2240360_+|ROK-family-protein
MGATGSAPRRGFGIDVGGSGVKGGIVDLDTGSLIGDRYKLLTPQPATPEAVAATIAEVVEHFGWDGPLGVTYPGVVADGIVRTAANVDKAWIGCHAAQVIGDALPGQRVTVLNDADAAGLAEERYGAGRGHTGVIVLLTFGTGIGSAVIHNGALLPNTEFGHLEVGGKEAEHRAASSVKEAQGWSYERWTKEVTRVLVAIENAIWPDLFIAGGGISRKADKWIPLLQNRTPVVAAALRNSAGIVGAAMAAEADVTATAR
>NZ_AP022563.1|WP_098002042.1|2238623_2239478_-|inositol-monophosphatase
MTPLDSRPDLLRDVAEQLATEAAQFVLRRRQEVFGDDVRPASRAADAVRTKSTPTDPVTVVDTETERLLRTRINELRPGERILGEEEGGPAGGDGELTWVLDPIDGTVNFLYGIEAYAVSVGVQRDGLSVAGAVADVAGGAIYSAAAGRGARVRRRGISTTLRCSRADDLATALIGTGFSYERARRERQGRVVAELLPSVRDLRRIGSCALDLCMVAAGRLDGYYEDGVQRWDWAAGALIAAEAGARLRLPSDPTGSGLVVAAGPGISADLHALLQRCGVTDTA
>NZ_AP022563.1|WP_098002041.1|2237962_2238616_+|envelope-integrity-protein-Cei
MVAQITAGTAFDKHGRPFRRRNFMPAAVLFAVLAVITVLVWVIALSRPADVREAAACNPPPAPAEPNAEMPQLEPVSRQAMTDVMPAKLADTRIRVLNASGQGGQAAEVAGALRDLGFAEPEAANDPLYATARLQCQGQIRFGPAGQAAAAAVWLVAPCTELYRDQRTDDSVDLAIGTDFEELTRSDDIEAVLASLLPDATQPADPSLLSKIHTGTC
>NZ_AP022563.1|WP_043408120.1|2237473_2237776_-|DUF4193-domain-containing-protein
MATDYDAPRRTETDDVSEDSLEELKARRNEAQSAVVDVDESETAESFELPGADLSGEELSVRVIPKQADEFTCSSCFLVHHRSRLASEKNGMMICSDCAA
>NZ_AP022563.1|WP_098001877.1|2236980_2237454_+|DUF3093-domain-containing-protein
MSDTRATTQSLRYRERLRVPWWWWPPAMGVAALIAVVFQRGLPALPDWVPFVVLWAVTAVVLLRLGRLDVRVVETAGQTQLWVGDAHLPASVMARTAEVPTTAKSAALGRQLDPAAYVVHRPWVGPMVLVVLDDPEDPTPYWLISTRRPDRVLAALK
>NZ_AP022563.1|WP_098001876.1|2236490_2236955_-|dUTP-diphosphatase
MSTSLAVVRLDRGLPLPSRAHDGDAGVDLFSAEDVELAPGARALVSTGIAVAIPHGMVGLVHPRSGLAARAGLSIVNSPGTIDAGYRGEVKVSLINLDPVTPITIRRGDRIAQLLVQRVELPELVEVTSFDEAGLSGTTRGDGGHGSSGGHASL
>NZ_AP022563.1|WP_098001875.1|2235718_2236471_-|DUF3710-domain-containing-protein
MAALKRHRDGDDGAPTAQEEAGEELEGPFDIDDFDDPAVAAVARLDLGSVLIPMPEGGQVQVELSESGVPSAIWVVTPNGRFTIAAYAAPKSSGLWREVAAELAESLRKDVSRVSIEDGPWGREVVGTAGDGSTVVRFIGVDGYRWMVRCVVNGPADHIGKLSEQARNALADTVVRRGDTPLPVRTPLTVQLPEPMAAQLAAAQEQAAAQQAQAAGQPVPPPQEQQPPQPAARQGTLGSAMQQLRTSMGG
>NZ_AP022563.1|WP_098002040.1|2234983_2235703_+|alpha/beta-fold-hydrolase
MAVDLRGVTTVLLPGTGSDDDFVDRAFRTPLRAAGAHVVTPKPQPHRLIAGYLDALAHAAARSGPIAVGGVSIGGAVALAWALANPTRAVAVLAALPAWTGAPEPAPAAQAARYSAQALRRDGLAATTAQMRASSPRWLADDLTRSWAAQWPALPDAMDEAAGYTAPTAAELHGLGVPLAVVSASDDAVHPLRVGVEWVTAAPHAALRTVTLQQIGDDPAILGVQCLAALAEADGGDAA
>NZ_AP022563.1|WP_098001874.1|2234474_2234846_-|OB-fold-nucleic-acid-binding-domain-containing-protein
MATAEGYLRRLTRRLTEDPEQLDVEELSEDVAHTGAQKAIDCQRGQEVTMIGTLRSVECNGKSCAGGVKAELFDGTDSVTLVWLGQRRIPGIESGRTLKVHGRVGKLDNGAKAIYNPHYEIQK
>NZ_AP022563.1|WP_098001880.1|2243894_2244677_-|hypothetical-protein
MGILSGFAPWIVYWVLVGNVPFGTAVLVALAVAVAVFVVAQIRNAAGRTLEIGALATFLLLTVLTFVGSQSFLERWLQPLSSAGIFLVALVGALIGKPFVREFAEVGQPKEVVESDVFARITGVLTWIWIAAFAGMTVSSAIPPLVYGDATILDTRTPLSFICYWVVPFSLLGVAALLSRVLPDRMVPPAEEIVRKTTFVAFAEAEIDQLIYLATEHANREAGPGKEAYDVRIGSKGVPLVGDETRESWPSTYKVRERKR
>NZ_AP022563.1|WP_098001881.1|2244725_2245094_-|DUF952-domain-containing-protein
MNQTRAGGVLVHLCSTADWAKAQERGVHRPESLASVGFVHLSTPAQAHLPANRLYAGRTDLLLLRVDAARLTSPVRWEPGVPTDPDGMVFPHLYGELPIQAVIRVTPYLPGRDGLFGPIAPA
>NZ_AP022563.1|WP_098001882.1|2245227_2245419_+|hypothetical-protein
MTATLTSPELTKADRCDRCGAAARVRAKLPSGAELLFCQHHANEHEAKLIAMAAVLEVSPVEA
>NZ_AP022563.1|WP_098001883.1|2245446_2246415_+|YihY/virulence-factor-BrkB-family-protein
MGDQSAAQAKRSSSRHHLRHLTVRTLSKSWDDSIFSESAQAAFWCALSLPPLLLGMLGSLAYVAPLFGPDTLPTIESQLISLADRFFSPNVVVEIIEPTVRDIILGARGEVVSLGFVISLWAGSSAISAFVDSITEAHGQTELRHPVRQRFYALGLYVVMLIGAILAAPFLALGPRKVAEFIPDSWDRALQFGTYPVLFLGLLVAVNVLYRVSLPRPLPSHRLLLGSVLAAVVFLIATWGLRLYLTWITSTGYTYGALATPIAFLLFAFFLGFAIMIGAELNAAVEEEWPAPDTHANRLRNWLEGRGATVSDDSGGTGRATS
>NZ_AP022563.1|WP_098001884.1|2246404_2246641_-|DUF3039-domain-containing-protein
METQTIERTDTDERVDDGTDDDTPKFFHYVKKDKIAESAVMGTHVVALCGEVFPVTRSAKPGSPVCPDCKRIYEQLKK
>NZ_AP022563.1|WP_098001885.1|2246702_2247149_+|DUF3099-domain-containing-protein
MRQWSHDIATGSGSRVRDHDLNFDDDGRPVLITRAAPAYEEQHRQRVRKYLTLMSFRIPSLILAAVAYGIWHNGLISLAIIVAAIPLPWMAVLIANDRPPRTAEEPRRYDSPRRIPLFPTAEQPAIYSRSVTETPQSGTAEFRDDRPS
>NZ_AP022563.1|WP_098001886.1|2247296_2248256_+|sigma-70-family-RNA-polymerase-sigma-factor-SigB
MANATTSRVDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAKRIEAGLYARHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSYAS
>NZ_AP022563.1|WP_098001887.1|2248387_2249080_+|metal-dependent-transcriptional-regulator
MNDLVDTTEMYLRTIYDLEEEGVIPLRARIAERLEQSGPTVSQTVSRMERDGLLHVAGDRHLELTDKGRALAVAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSVDVERRLVQVLDNPTTSPFGNPIPGLSELGLGDQLIDEAFNLVRLTELPAGMPVAVVVRQLTEHVQGDVELISRLKDAGVVPNARVTVQLNDHGGVMIVIPGHEQVELPHDMAHAVKVEKV
>NZ_AP022563.1|WP_098001888.1|2249085_2250135_-|DUF4192-domain-containing-protein
MTTSSPSDYPIDRPGSLIAALPAVLGFVPERSLVLVTAADGQMGAVLRADLDDELLGSLPRLAELAAMSGAEIAIGVLVDEVGAGCLVCADEHRELSQLLDAELRERDVDLFAVHVVEQVAAGARWHCADGCGSSGVVEDPHASPIAAAAVLDGRRLYSRRAELVDVVAVADPVRSAALGAVIVESGAIDPQRPQSQARADIEHALECAAQIDDGHALSDKDSARLAWAVTDPRVRDTLYALAVGDKAGVAEALWADLSRRLPAPWRVEALVLLAFSAYARGDGPLAGIALDAALRCEPEHTMAGMLDTALQSGMRPEQIRELARTGYRLARQLGVRLPPRRLFGRRAG
>NZ_AP022563.1|WP_098001889.1|2250440_2251430_+|PAC2-family-protein
MGDHDEDPSQHYQPEQTGMYELEFPSPQLTAPDGRGPVLIHALEGFSDAGRAIKLAAQHLKNTLNTELVASFAIDDLLDYRSRRPLMTFKTDHFTGYEEPELNLYALHDSVGTPFLLLAGLEPDLRWERFITAVRLLSERLGVRRVIGLGSIPMAVPHTRPITMTAHSNDKELIADHQPWVGEVQVPSSVSNLLEFRMAQHGHEVVGYTVHVPHYLAQTDYPAAAESLISEIARSASLDIPTGELAQAAAELYEKINEQVAGSPEVAQVVDALERQYDAFVAAQENRSLLAHDEELPSGEELGAEFERFLAQQTGDKYRKDGENPTDSP

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Crispr_ID: NZ_AP022563_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022563_4

3951609-3951680

Orphan

Consensus_repeat	Method
GGCGGAAACGGCGGCAACGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022563_4

>merge|NZ_AP022563|4|3951609-3951680|CRISPRCasFinder
GGCGGCAGCGGCGGTCACGGCGGCAACGGTGGCGACGTGCTTGGTGGCGGCGGCACGGCCGGGGTCGGCGGC

>NZ_AP022563|4|3|3951609-3951680|CRISPRCasFinder
GGCGGCAGCGGCGGTCACGGCGGC	AACGGTGGCGACGTGCTTGGTGGC
GGCGGCACGGCCGGGGTCGGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|183548
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293541
NZ_AP022563.1\|WP_098000893.1\|3941904_3942186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223659
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213224
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173883
NZ_AP022563.1\|WP_098000909.1\|3955000_3955645_+\|LpqN/LpqT-family-lipoprotein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225113
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235728
NZ_AP022563.1\|WP_098000921.1\|3959774_3960623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226322
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|236106
NZ_AP022563.1\|WP_098000911.1\|3955646_3955970_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.69506e-56
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.09707e-64
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|183548	PRK12478, PRK12478, crotonase/enoyl-CoA hydratase family protein.	0
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.97139e-83
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	gnl\|CDD\|293541	pfam16936, Holin_9, Putative holin. This is a family of putative holins from Actinobacteria with three TM regions.	7.05969e-21
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.32285e-47
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	4.48206e-22
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	6.35584e-53
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173883	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.08526e-132
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	gnl\|CDD\|225113	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms].	0.00336403
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	gnl\|CDD\|235728	PRK06184, PRK06184, hypothetical protein; Provisional.	9.90697e-94
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	5.98595e-170
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|236106	PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.8117e-72
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.38279e-14

>NZ_AP022563.1|WP_098000901.1|3946837_3948424_-|ABC-transporter-substrate-binding-protein
MNLRGPRGTVLMLMASLALLAGCATPAGDPESDQIVLAESYELGGYNPVNGYSESGVSPIYDGLYRPSATTDSVVPDLTPALAAREPEPAGPNRWRIPLRTGVVFSDGSSFDSADVVATYAAVADPRVASEISTSVSPIVSLTADGPEAVTVELTTAADPRPYLLIGILPSERVEDAPAADWAVNTAPVGTGPYRLESLRPDQAVMVARDDYWGEPAQVNRLVYTYTPDDNARAQSMVSGAVDGTTLPPRLIDSVRSDEVQTVGVQSADWRGVALPAGNPFTADPAARLAMNLGVDREAIVGDVLRGYGRPASTPVAEAYGDAYNPDARFAFDLDRAKAVLDEAGWRADAGQVREKDGARASFELLYNASDTLRRDLAVAYAAAMKPLGIEVRPRGSSWDEIDTRFGDSAVLLGGGATPYSIDSQVYDTLHTRVANSSPYSNPGNFTAPGLDELLERAVRSAPGPGKDQLYRDIQAGYAGEPSHVFLVFLDHTYSYRDRGWTQTPPIMEPHSHGVSWGPWWNVAAWTR
>NZ_AP022563.1|WP_098001109.1|3945815_3946787_-|ABC-transporter-permease
MRAAGRLLAVRTAIAVPLTVALSAAIFAVASLSPFDPLAAYLGSNYQFATPAQRDAMRAAYGTDQSWYAAWWQWLGGLARGDLGWSSTQSQPVSTVLAERLPFTLALSGAALLTATVLAIVLGCLAGMRRGGVLDRALTGLSVAFAAVPPFVVSLALVVVVAVGLRWLPASGAAAPGADYTVAGVLRYGILPWLALTVSMIPWLLLTTRAAVVASIDSDAVRGARARGVHGWALLRGHIAPVSVLPTLALLGTRLPELIAGAAIVETVFGWPGMAAVLVDSAAALDFPLLAALTVAAAAAVLAGSALSDAAAVAIDPRIRMAG
>NZ_AP022563.1|WP_098000899.1|3944988_3945819_-|ABC-transporter-permease
MSTPTLQRVRSGLTWPWIVLGVIAVAAVGIPWVAGEQVADFSAALAPPSTEHPAGTDHSGYDLLTRTAEGLQMSLLIAVVCAIAATVLGVVIGVAAALVGGWPDAVVMRLVDGVNALPHLVVGIVIAAMWRGAPLAIIASIALTHWPAVARVVRAELLAVAEAGWVETARLAGASRWFVARHHLLPAVTAQALVAMVVLLPHAVWHESTLSFLGVGLSPDRASLGTLLSEARGDVLTGAWWTLAVPAAALVATALAFAMAGATLRSRNRPPTGAVW
>NZ_AP022563.1|WP_098001107.1|3944224_3944992_-|ABC-transporter-ATP-binding-protein
MTFSAALTGLTVDIDLRRGRRCAAVPVLDQVNLEVNAGRVTALIGESGCGKSLVAAALSGLMPPGSRVRGQVRIGDRELRAGDEAGWRALRGRHIGVVPQSAATSLTPVRTVGSQLAEICSRLGADRTPEQLCAAVALPASVVGRYPHELSGGMAQRVAIAAALAGRPALLIADEPTSALDPDNAALVWRLLGEAAADGAAVLVITHDLPSLLRAAVCDEVAVMARGTVLSHEPLEDTLSSADPYLRALLGTVPV
>NZ_AP022563.1|WP_098000897.1|3943583_3944228_-|ATP-binding-cassette-domain-containing-protein
MTGIRAAGVSVTLAGRTVLDGVDLVAPAGAVTGVTGASGSGKTTLLRVLAGLRAPDAGEVRYDGGPVPPSGSIALLAQHPRQVCNPRWTLAQIIAEPAAIRGASSASAARQTLDEVALRVGLEPELLDRYPGQVSDGQLQRACLGRAMLAQARFVLCDEPTAMLDPIATGSVVSVLRDFAAAGAAVVLVSHDPGLVETLADEVLALPRPLGLRT
>NZ_AP022563.1|WP_098000895.1|3942186_3943587_-|dihydrolipoyl-dehydrogenase
MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAIIEPKYWGGVCLNVGCIPSKALLRNAELAHLFTKQAKTFGITGEAEFDYGAAFDRSRKVADGRVAGVHFLMKKNKITEINGYGKFTGANSIEVDLNEGGTESVEFDNAIIATGASTKLVPNTSLSENVVTYEEQIMERELPGSIIIAGAGAIGMEFAYVMKNYGVDVTIVEFLPRALPNEDAEVSKEIEKQYKKLGVKILTGTKVESIRDEGADGSVYVKVSKDGKSDELKADKVLQAIGFAPNVEGFGLDKAGVELTERKAIGIDDYMRTNVSHIYAIGDVTGKLQLAHVAEAMGVVAAETIAGAETLALGDYRMLPRATFCQPQVASFGLTEDQAKDEGYDVVVAKFPFTANGKAHGLGDSTGFVKLVADKKHLELLGGHLIGPDVSELLPELTLAQKWDLTAHELARNVHTHPTLSEAMQECFHGLVGHMINF
>NZ_AP022563.1|WP_098000893.1|3941904_3942186_-|hypothetical-protein
MRAVWVAGLGGLLVGHILWLAGISAAIATSNVSTWVLVVAAASLLLGAAAGWAGRTTWQRRANPNWRVWTAFWWTLPISPVLLSLVVLGVTYL
>NZ_AP022563.1|WP_098001105.1|3940704_3941826_-|GGDEF-domain-containing-protein
MSDGAVGGLLRQWWRQRDDYSWRIEFLRSRGLLPVLRYVIAGIGAVMGVLSVINAVQPPGVDSALLRAGWAVVAVGSLAWAARWALLPWPGVRASAALVVYVDVLMTLSTLLFGDPNLAMSGIPILLCAGGYVVFFHGPRLHLVHIAWCTASVVGIAVWLAATTPDYGLQVAVSRAVIALLVTVCILPALQFGFWLLQDSSMQSLTDPLTELTNRRGLGTAVKRLHEAARADADLSALLIDVDGFKNVNDSLGHAVGDEVLIRTARRIRSAVRGDAVVVRWGGEEFLVLDRISARKAGALAERICAAVSAPAEPAVSVSIGVATCAAGDRDQLDQVIKAADAAMYEAKERGGNCVVVSADGFSPGSPAVRPAW
>NZ_AP022563.1|WP_098000892.1|3940187_3940742_+|carboxymuconolactone-decarboxylase-family-protein
MTAPDPYPVRVAPGGFKELGPINWVAAKLGARGIRAPRFSLFNVLGRHRLLFWAWLPLSGYLLYAGKLPRRDAEIVILRVGHLRGCEYELQQHRRLARSRGLDADTQVRIFTGPDADGLSDRERTLITATDEFVVTRGVSGQTWQRLATHLSTTQLIEFCMLAAQYDGLAATITTLGVPLDFPD
>NZ_AP022563.1|WP_098000890.1|3938766_3940191_+|helix-turn-helix-domain-containing-protein
MAKTFVGARLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVPVLLRITEVFGVDATFFASQDDTRLIAELREVLLDRDLDVDADAAEVADMVGAHPALARAMVNLHRRYQLATTQLAAATEGRFDDGSGSGSGAITMPHEEVRDYFYQRQNYLHDLDTAAEELTSGMRIQRGELAGDLSDRLRFVHGVTIRRHDLGESVLHRFDPGSKTLHLSAQLAPGQTVFRMAAELAYLEYGDLIEKLTDDGKFTSDESRRLARMGLANYFAAATVLPYGQFHQVAEQFRYDIERLSAYYSASYETICHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANPGKILVQIAEMPDGRSYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVYSEGLVTSDSNVRATPIGAGCRVCERDNCPQRAFPALGRALDIDEHRSTVSPYLVRPA
>NZ_AP022563.1|WP_098000903.1|3952189_3952648_-|hypothetical-protein
MADIDRDGGPGEPTEAFTPEFTGAFTAASVLDQPASEPDVSPHPAQPVLVPGAAQYLSRWRFVFVMLAVWVVAAAAGAGLYYWWFHSLDKTMPVFVVLVYVVAATVGSLLTALVQNRPPIAALAIGLMSAPMASVAGAALLYGGYVFGFLSV
>NZ_AP022563.1|WP_098000905.1|3952640_3952919_-|hypothetical-protein
MIPLPRASALAGVMIVGVAIGMIGAIAAAVEITATVRPDIVIALVVGIPGVIGLITILVSKRRWVTAVGAMILAIGPGWFGALTAIQVATGG
>NZ_AP022563.1|WP_098000907.1|3952989_3954999_+|S9-family-peptidase
MADTEDPHLWLEDVTGDDALAWVRAHNEPTLAELGGERFEQMRADALEVLDTDTRIPYVRRRGEHLYNFWRDANNPKGVWRRTTLESYLQEQPEWDVVIDVDALAAADDTNWVWAGAHVIEPDFSRALVSLSRGGSDAAIVREFDMVTRQFVTDGFQLPEAKSQVGWADHDTLLVGTDFGDGSLTDSGYPRQVRRWRRGQPLAEAELVFSGSSDDVVVAASVDRTEGFERTLIARALDFFNEEVYELRDGELIRIDTPTDASISLHREWLLIELRTDWQRGGGLYRAGSLLAAPYDEFLAGTAELTTVFEPDAHTCLHHYAWTRDHLVVVTLADVASRVEIYTPGSWRSEPVRGLPENTNTVIVAADEHGDEIFLDSSGFDTASRLLHGTAGAELREIKRAPSFFDAADLEVTQHFATSADGTSVPYFVVGHRHSQGPGPTLLGGYGGFEVARTPSYDGVLGRLWLSRGGTYVLANIRGGGEYGPTWHTQAMREGRHLVAEDFAAVAKDLVARGITTVEQLGAQGGSNGGLLMGIMLTQYPDLFGALVCSVPLLDMRRFHLLLAGASWVAEYGNPDDPDDWAFISKYSPYQNISAHHRYPPVLITTSTRDDRVHPGHARKMTAALEAAGHPVLYYENIEGGHAGAADNPQTAFRAALIYEFLLRILDGS
>NZ_AP022563.1|WP_098000909.1|3955000_3955645_+|LpqN/LpqT-family-lipoprotein
MSTMTRALVLIACTATLLVTGCAREITGTPVLAGGQDAGGPSGSSAECTTVDAPLADIPAVSPREPQLRIPVPAGWKRNSMMDSQVIRYAIVAEELIANGFAPNAVVTLEQARGVADPAEVFDENRANLIRMMNATDLQTEDNTTCGLPSETTTYMAPPMGPAPRRPIIMHAVVAQSGNATYLATVTIQTSDGANPTYQRDAEQIVDGFQMLLR
>NZ_AP022563.1|WP_098000911.1|3955646_3955970_+|hypothetical-protein
MDQASNVLLIAGAVALVLAAVVPGRDTAHLPARAVKRRIYWSGSAIGAALLFAGGLPDLQSAVAFLAAAAILMTGWAYFRTPYLKIGGRIRSAQPAHRIPDPPAPGR
>NZ_AP022563.1|WP_165776215.1|3955896_3956565_-|VTT-domain-containing-protein
MELLGGPGAGLAIFLENIFPPLPSEVILPMAGFAAHLGVLSVAAAIIWTTLGSVLGAWLLYWLGAKLGHDRMRRVLSRFPLIDTEDIDKSSAWFARHGTKAVFFGRMLPLFRSFISVPAGTERMNFLVFTLFTALGSLVWNSVFVGLGYGLGANWRYVEPYSAIFQYIVLAVVAALVVRFVWSRLRRRRQRADDDAMAASDRVPADPVSGALAAPNESAHRS
>NZ_AP022563.1|WP_098000915.1|3956727_3957624_+|crotonase/enoyl-CoA-hydratase-family-protein
MASFETILYRTQPPVATITLNRPEQLNTIVPPMPDEIEAAVGLAERDPDIKVIVLRGAGRAFSGGYDFGGGFTHWGEAMNTDGRWDPGKDFAMVSARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADLVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLAKVKWHALTGEPLTGREAAAVELINESVPFDRLEARVAEIAGKLATIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALRFVDTAATDGVRAAVTRRDGPWGDYSQAPPHRRPDPSHIIEP
>NZ_AP022563.1|WP_098000917.1|3957662_3959168_+|FAD-dependent-monooxygenase
MIDTDVVVVGAGPTGLTLACGLRLHGVDVRVVDRAAGPATTSRANFLHARGSEVLGRIGALGSLPDESLRAMRITNYLGDRPLATLEFGDPAMHTAAPPMVISQAKVEAALRARLADLGVTPEWGHGLAGLRSDGDTVLAELDDGTGIRARWLVGCDGTSSTTRTLAGIGFPGVKLTERWLLADLRLDWDVDRTGTTGWVHPAGVVGAMPMPDESGGDNLWRLFAYDPGLAQRPDQDEILERIRRILPERTGRQARIDGADWLSVFTVHRRLADRYRQGRVFIAGDAAHAHAPFGGQGMLTGIGDAENLAFKLALVVHARADEPLLDSYEAERRPLATEVLRGTSAVTRVNIANHPVGRFLRDRVAARIFRLPAVQRWTTYTASQLWVSYRKGPLGGSGRKPRPGDRVPDLACRRRDGTPTSVHRELGGRFVLLLPAGADGQAPIDVARTHLGDFVTGLHHTGEQMWLIRPDAHLAWRGAAGDVAGLSRWLTDALHTGRAR
>NZ_AP022563.1|WP_098000919.1|3959164_3959773_+|TetR/AcrR-family-transcriptional-regulator
MTAGAVGRGRPRDAEADRAILRAGLELFIERGVEGTSIEQIAKKAGVGKPTVYRRWSGKEELIAAAMETLVADEVQWASSEQIATESPYALVEAAIDGAAAATTTAQYRALVARVFGSAVSHPELMATYWQHYIVPRRKLAAALLERARDLGTVSADTDVEVAIDMMVGAITYRVLQPDPPDTPEMRRYLRAVYRQIGLLPS
>NZ_AP022563.1|WP_098000921.1|3959774_3960623_-|hypothetical-protein
MRFLAALLLWLLTTVALAAAVPALWAQATVVDEDGYASLAASAARDPRLQQAMASELATQAVTLAEDNGYSLNPRLVGQVADSYTHNEGFAGQFGQANRIAHRWMFTGAVPSGNSTDQWLIDVAPMLNDPSFDATLGSLDLRVPDTMTVPITVDSPELRPGKLRWLASWGPWISIGAAAVTVLLALLTVAAARSRGKALTALGVSALLVGAAGWAGIEVADRPLDAALDRTTGDIRTVAEVMVESAIDSLHHWLNVTIVAGVALVVLGAVAAGLGSVLRRGT

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Crispr_ID: NZ_AP022563_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022563_3

3951417-3951537

Orphan

Consensus_repeat	Method
GGCGGAAACGGCGGCAACGGCGGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP022563_3

>merge|NZ_AP022563|3|3951417-3951537|CRISPRCasFinder
GGCGGTGCCGGTGGCAGCGGCTACACCGCGACCACCCCGGGCGGCAATGGCGGCAACGGCGGCAACGGTGGCACCGGGGGCACGCTCAACAGCAACGGTGGTCGCGGCGGGAACGGCGGCA

>NZ_AP022563|3|2|3951417-3951537|CRISPRCasFinder
GGCGGTGCCGGTGGCAGCGGCTAC	ACCGCGACCACCCCG
GGCGGCAATGGCGGCAACGGCGGC	AACGGTGGCACCGGGGGCACGCTCAACAGCAAC
GGTGGTCGCGGCGGGAACGGCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|183548
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293541
NZ_AP022563.1\|WP_098000893.1\|3941904_3942186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223659
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213224
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173883
NZ_AP022563.1\|WP_098000909.1\|3955000_3955645_+\|LpqN/LpqT-family-lipoprotein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225113
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235728
NZ_AP022563.1\|WP_098000921.1\|3959774_3960623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226322
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|236106
NZ_AP022563.1\|WP_098000911.1\|3955646_3955970_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.69506e-56
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.09707e-64
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|183548	PRK12478, PRK12478, crotonase/enoyl-CoA hydratase family protein.	0
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.97139e-83
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	gnl\|CDD\|293541	pfam16936, Holin_9, Putative holin. This is a family of putative holins from Actinobacteria with three TM regions.	7.05969e-21
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.32285e-47
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	4.48206e-22
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	6.35584e-53
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173883	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.08526e-132
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	gnl\|CDD\|225113	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms].	0.00336403
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	gnl\|CDD\|235728	PRK06184, PRK06184, hypothetical protein; Provisional.	9.90697e-94
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	5.98595e-170
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|236106	PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.8117e-72
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.38279e-14

>NZ_AP022563.1|WP_098000901.1|3946837_3948424_-|ABC-transporter-substrate-binding-protein
MNLRGPRGTVLMLMASLALLAGCATPAGDPESDQIVLAESYELGGYNPVNGYSESGVSPIYDGLYRPSATTDSVVPDLTPALAAREPEPAGPNRWRIPLRTGVVFSDGSSFDSADVVATYAAVADPRVASEISTSVSPIVSLTADGPEAVTVELTTAADPRPYLLIGILPSERVEDAPAADWAVNTAPVGTGPYRLESLRPDQAVMVARDDYWGEPAQVNRLVYTYTPDDNARAQSMVSGAVDGTTLPPRLIDSVRSDEVQTVGVQSADWRGVALPAGNPFTADPAARLAMNLGVDREAIVGDVLRGYGRPASTPVAEAYGDAYNPDARFAFDLDRAKAVLDEAGWRADAGQVREKDGARASFELLYNASDTLRRDLAVAYAAAMKPLGIEVRPRGSSWDEIDTRFGDSAVLLGGGATPYSIDSQVYDTLHTRVANSSPYSNPGNFTAPGLDELLERAVRSAPGPGKDQLYRDIQAGYAGEPSHVFLVFLDHTYSYRDRGWTQTPPIMEPHSHGVSWGPWWNVAAWTR
>NZ_AP022563.1|WP_098001109.1|3945815_3946787_-|ABC-transporter-permease
MRAAGRLLAVRTAIAVPLTVALSAAIFAVASLSPFDPLAAYLGSNYQFATPAQRDAMRAAYGTDQSWYAAWWQWLGGLARGDLGWSSTQSQPVSTVLAERLPFTLALSGAALLTATVLAIVLGCLAGMRRGGVLDRALTGLSVAFAAVPPFVVSLALVVVVAVGLRWLPASGAAAPGADYTVAGVLRYGILPWLALTVSMIPWLLLTTRAAVVASIDSDAVRGARARGVHGWALLRGHIAPVSVLPTLALLGTRLPELIAGAAIVETVFGWPGMAAVLVDSAAALDFPLLAALTVAAAAAVLAGSALSDAAAVAIDPRIRMAG
>NZ_AP022563.1|WP_098000899.1|3944988_3945819_-|ABC-transporter-permease
MSTPTLQRVRSGLTWPWIVLGVIAVAAVGIPWVAGEQVADFSAALAPPSTEHPAGTDHSGYDLLTRTAEGLQMSLLIAVVCAIAATVLGVVIGVAAALVGGWPDAVVMRLVDGVNALPHLVVGIVIAAMWRGAPLAIIASIALTHWPAVARVVRAELLAVAEAGWVETARLAGASRWFVARHHLLPAVTAQALVAMVVLLPHAVWHESTLSFLGVGLSPDRASLGTLLSEARGDVLTGAWWTLAVPAAALVATALAFAMAGATLRSRNRPPTGAVW
>NZ_AP022563.1|WP_098001107.1|3944224_3944992_-|ABC-transporter-ATP-binding-protein
MTFSAALTGLTVDIDLRRGRRCAAVPVLDQVNLEVNAGRVTALIGESGCGKSLVAAALSGLMPPGSRVRGQVRIGDRELRAGDEAGWRALRGRHIGVVPQSAATSLTPVRTVGSQLAEICSRLGADRTPEQLCAAVALPASVVGRYPHELSGGMAQRVAIAAALAGRPALLIADEPTSALDPDNAALVWRLLGEAAADGAAVLVITHDLPSLLRAAVCDEVAVMARGTVLSHEPLEDTLSSADPYLRALLGTVPV
>NZ_AP022563.1|WP_098000897.1|3943583_3944228_-|ATP-binding-cassette-domain-containing-protein
MTGIRAAGVSVTLAGRTVLDGVDLVAPAGAVTGVTGASGSGKTTLLRVLAGLRAPDAGEVRYDGGPVPPSGSIALLAQHPRQVCNPRWTLAQIIAEPAAIRGASSASAARQTLDEVALRVGLEPELLDRYPGQVSDGQLQRACLGRAMLAQARFVLCDEPTAMLDPIATGSVVSVLRDFAAAGAAVVLVSHDPGLVETLADEVLALPRPLGLRT
>NZ_AP022563.1|WP_098000895.1|3942186_3943587_-|dihydrolipoyl-dehydrogenase
MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAIIEPKYWGGVCLNVGCIPSKALLRNAELAHLFTKQAKTFGITGEAEFDYGAAFDRSRKVADGRVAGVHFLMKKNKITEINGYGKFTGANSIEVDLNEGGTESVEFDNAIIATGASTKLVPNTSLSENVVTYEEQIMERELPGSIIIAGAGAIGMEFAYVMKNYGVDVTIVEFLPRALPNEDAEVSKEIEKQYKKLGVKILTGTKVESIRDEGADGSVYVKVSKDGKSDELKADKVLQAIGFAPNVEGFGLDKAGVELTERKAIGIDDYMRTNVSHIYAIGDVTGKLQLAHVAEAMGVVAAETIAGAETLALGDYRMLPRATFCQPQVASFGLTEDQAKDEGYDVVVAKFPFTANGKAHGLGDSTGFVKLVADKKHLELLGGHLIGPDVSELLPELTLAQKWDLTAHELARNVHTHPTLSEAMQECFHGLVGHMINF
>NZ_AP022563.1|WP_098000893.1|3941904_3942186_-|hypothetical-protein
MRAVWVAGLGGLLVGHILWLAGISAAIATSNVSTWVLVVAAASLLLGAAAGWAGRTTWQRRANPNWRVWTAFWWTLPISPVLLSLVVLGVTYL
>NZ_AP022563.1|WP_098001105.1|3940704_3941826_-|GGDEF-domain-containing-protein
MSDGAVGGLLRQWWRQRDDYSWRIEFLRSRGLLPVLRYVIAGIGAVMGVLSVINAVQPPGVDSALLRAGWAVVAVGSLAWAARWALLPWPGVRASAALVVYVDVLMTLSTLLFGDPNLAMSGIPILLCAGGYVVFFHGPRLHLVHIAWCTASVVGIAVWLAATTPDYGLQVAVSRAVIALLVTVCILPALQFGFWLLQDSSMQSLTDPLTELTNRRGLGTAVKRLHEAARADADLSALLIDVDGFKNVNDSLGHAVGDEVLIRTARRIRSAVRGDAVVVRWGGEEFLVLDRISARKAGALAERICAAVSAPAEPAVSVSIGVATCAAGDRDQLDQVIKAADAAMYEAKERGGNCVVVSADGFSPGSPAVRPAW
>NZ_AP022563.1|WP_098000892.1|3940187_3940742_+|carboxymuconolactone-decarboxylase-family-protein
MTAPDPYPVRVAPGGFKELGPINWVAAKLGARGIRAPRFSLFNVLGRHRLLFWAWLPLSGYLLYAGKLPRRDAEIVILRVGHLRGCEYELQQHRRLARSRGLDADTQVRIFTGPDADGLSDRERTLITATDEFVVTRGVSGQTWQRLATHLSTTQLIEFCMLAAQYDGLAATITTLGVPLDFPD
>NZ_AP022563.1|WP_098000890.1|3938766_3940191_+|helix-turn-helix-domain-containing-protein
MAKTFVGARLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVPVLLRITEVFGVDATFFASQDDTRLIAELREVLLDRDLDVDADAAEVADMVGAHPALARAMVNLHRRYQLATTQLAAATEGRFDDGSGSGSGAITMPHEEVRDYFYQRQNYLHDLDTAAEELTSGMRIQRGELAGDLSDRLRFVHGVTIRRHDLGESVLHRFDPGSKTLHLSAQLAPGQTVFRMAAELAYLEYGDLIEKLTDDGKFTSDESRRLARMGLANYFAAATVLPYGQFHQVAEQFRYDIERLSAYYSASYETICHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANPGKILVQIAEMPDGRSYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVYSEGLVTSDSNVRATPIGAGCRVCERDNCPQRAFPALGRALDIDEHRSTVSPYLVRPA
>NZ_AP022563.1|WP_098000903.1|3952189_3952648_-|hypothetical-protein
MADIDRDGGPGEPTEAFTPEFTGAFTAASVLDQPASEPDVSPHPAQPVLVPGAAQYLSRWRFVFVMLAVWVVAAAAGAGLYYWWFHSLDKTMPVFVVLVYVVAATVGSLLTALVQNRPPIAALAIGLMSAPMASVAGAALLYGGYVFGFLSV
>NZ_AP022563.1|WP_098000905.1|3952640_3952919_-|hypothetical-protein
MIPLPRASALAGVMIVGVAIGMIGAIAAAVEITATVRPDIVIALVVGIPGVIGLITILVSKRRWVTAVGAMILAIGPGWFGALTAIQVATGG
>NZ_AP022563.1|WP_098000907.1|3952989_3954999_+|S9-family-peptidase
MADTEDPHLWLEDVTGDDALAWVRAHNEPTLAELGGERFEQMRADALEVLDTDTRIPYVRRRGEHLYNFWRDANNPKGVWRRTTLESYLQEQPEWDVVIDVDALAAADDTNWVWAGAHVIEPDFSRALVSLSRGGSDAAIVREFDMVTRQFVTDGFQLPEAKSQVGWADHDTLLVGTDFGDGSLTDSGYPRQVRRWRRGQPLAEAELVFSGSSDDVVVAASVDRTEGFERTLIARALDFFNEEVYELRDGELIRIDTPTDASISLHREWLLIELRTDWQRGGGLYRAGSLLAAPYDEFLAGTAELTTVFEPDAHTCLHHYAWTRDHLVVVTLADVASRVEIYTPGSWRSEPVRGLPENTNTVIVAADEHGDEIFLDSSGFDTASRLLHGTAGAELREIKRAPSFFDAADLEVTQHFATSADGTSVPYFVVGHRHSQGPGPTLLGGYGGFEVARTPSYDGVLGRLWLSRGGTYVLANIRGGGEYGPTWHTQAMREGRHLVAEDFAAVAKDLVARGITTVEQLGAQGGSNGGLLMGIMLTQYPDLFGALVCSVPLLDMRRFHLLLAGASWVAEYGNPDDPDDWAFISKYSPYQNISAHHRYPPVLITTSTRDDRVHPGHARKMTAALEAAGHPVLYYENIEGGHAGAADNPQTAFRAALIYEFLLRILDGS
>NZ_AP022563.1|WP_098000909.1|3955000_3955645_+|LpqN/LpqT-family-lipoprotein
MSTMTRALVLIACTATLLVTGCAREITGTPVLAGGQDAGGPSGSSAECTTVDAPLADIPAVSPREPQLRIPVPAGWKRNSMMDSQVIRYAIVAEELIANGFAPNAVVTLEQARGVADPAEVFDENRANLIRMMNATDLQTEDNTTCGLPSETTTYMAPPMGPAPRRPIIMHAVVAQSGNATYLATVTIQTSDGANPTYQRDAEQIVDGFQMLLR
>NZ_AP022563.1|WP_098000911.1|3955646_3955970_+|hypothetical-protein
MDQASNVLLIAGAVALVLAAVVPGRDTAHLPARAVKRRIYWSGSAIGAALLFAGGLPDLQSAVAFLAAAAILMTGWAYFRTPYLKIGGRIRSAQPAHRIPDPPAPGR
>NZ_AP022563.1|WP_165776215.1|3955896_3956565_-|VTT-domain-containing-protein
MELLGGPGAGLAIFLENIFPPLPSEVILPMAGFAAHLGVLSVAAAIIWTTLGSVLGAWLLYWLGAKLGHDRMRRVLSRFPLIDTEDIDKSSAWFARHGTKAVFFGRMLPLFRSFISVPAGTERMNFLVFTLFTALGSLVWNSVFVGLGYGLGANWRYVEPYSAIFQYIVLAVVAALVVRFVWSRLRRRRQRADDDAMAASDRVPADPVSGALAAPNESAHRS
>NZ_AP022563.1|WP_098000915.1|3956727_3957624_+|crotonase/enoyl-CoA-hydratase-family-protein
MASFETILYRTQPPVATITLNRPEQLNTIVPPMPDEIEAAVGLAERDPDIKVIVLRGAGRAFSGGYDFGGGFTHWGEAMNTDGRWDPGKDFAMVSARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADLVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLAKVKWHALTGEPLTGREAAAVELINESVPFDRLEARVAEIAGKLATIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALRFVDTAATDGVRAAVTRRDGPWGDYSQAPPHRRPDPSHIIEP
>NZ_AP022563.1|WP_098000917.1|3957662_3959168_+|FAD-dependent-monooxygenase
MIDTDVVVVGAGPTGLTLACGLRLHGVDVRVVDRAAGPATTSRANFLHARGSEVLGRIGALGSLPDESLRAMRITNYLGDRPLATLEFGDPAMHTAAPPMVISQAKVEAALRARLADLGVTPEWGHGLAGLRSDGDTVLAELDDGTGIRARWLVGCDGTSSTTRTLAGIGFPGVKLTERWLLADLRLDWDVDRTGTTGWVHPAGVVGAMPMPDESGGDNLWRLFAYDPGLAQRPDQDEILERIRRILPERTGRQARIDGADWLSVFTVHRRLADRYRQGRVFIAGDAAHAHAPFGGQGMLTGIGDAENLAFKLALVVHARADEPLLDSYEAERRPLATEVLRGTSAVTRVNIANHPVGRFLRDRVAARIFRLPAVQRWTTYTASQLWVSYRKGPLGGSGRKPRPGDRVPDLACRRRDGTPTSVHRELGGRFVLLLPAGADGQAPIDVARTHLGDFVTGLHHTGEQMWLIRPDAHLAWRGAAGDVAGLSRWLTDALHTGRAR
>NZ_AP022563.1|WP_098000919.1|3959164_3959773_+|TetR/AcrR-family-transcriptional-regulator
MTAGAVGRGRPRDAEADRAILRAGLELFIERGVEGTSIEQIAKKAGVGKPTVYRRWSGKEELIAAAMETLVADEVQWASSEQIATESPYALVEAAIDGAAAATTTAQYRALVARVFGSAVSHPELMATYWQHYIVPRRKLAAALLERARDLGTVSADTDVEVAIDMMVGAITYRVLQPDPPDTPEMRRYLRAVYRQIGLLPS
>NZ_AP022563.1|WP_098000921.1|3959774_3960623_-|hypothetical-protein
MRFLAALLLWLLTTVALAAAVPALWAQATVVDEDGYASLAASAARDPRLQQAMASELATQAVTLAEDNGYSLNPRLVGQVADSYTHNEGFAGQFGQANRIAHRWMFTGAVPSGNSTDQWLIDVAPMLNDPSFDATLGSLDLRVPDTMTVPITVDSPELRPGKLRWLASWGPWISIGAAAVTVLLALLTVAAARSRGKALTALGVSALLVGAAGWAGIEVADRPLDAALDRTTGDIRTVAEVMVESAIDSLHHWLNVTIVAGVALVVLGAVAAGLGSVLRRGT

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Crispr_ID: NZ_AP022563_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022563_2

3950646-3951225

Orphan

Consensus_repeat	Method
GGCGGAAACGGCGGCAACGGCGGC	CRISPRCasFinder

9 spacers

The CRISPR arrays of NZ_AP022563_2

>merge|NZ_AP022563|2|3950646-3951225|CRISPRCasFinder
GGCGGCGACAACGGCGACGGCACCCGCGGCGCGGACGGCGCCGACGGCCAGCTCCCCGGCATCCCCAGCGGTCACGGCGGCGCCGGCGGCAGCGGCGGCAATTCGACCGGCAACTACACCGATCCCGTCGTCGGCGGTAAGCCCGGCGGCACCGGTGGCAACGGCGGCGACGCCGGAAACCTCGGCGACGGCGGTGACGGAGGCAACGGCGGCAGAGGCGGCTACGGCGGCGTCGGCACCAAGGGCGCCGGAGCCACCGAGCTGGGTGCCAACGGAGGCGACGGCACCGATGGCGGCGACGGTGGAGCCGGCGGTAACGGCGGCTCCGGTGGCAACGGCGGGGTGATCTCGGGCGCGGCCGGCGACGGTGGACGCGGTGGTAACGGCGGCTGGGGAGGTGACGGGGGCACCGCGCTCGGCAGCGGTGGCGCCGGCACGTTCGACGTCAACGACGGGCGCGGCGGGGACGGCGGCAGCGGCGGGGACGGCGGAGATGGCGGAAACGGCGGCAACGGCGGCGCCGCGGGCACGGCCACCAACGGGGCCGCAGGCACCGACGGTGTCGGCGGAAACGGCGGCA

>NZ_AP022563|2|1|3950646-3951225|CRISPRCasFinder
GGCGGCGACAACGGCGACGGCACC	CGCGGCGCGGACGGCGCCGACGGCCAGCTCCCCGGCATCCCC
AGCGGTCACGGCGGCGCCGGCGGC	AGCGGCGGCAATTCGACCGGCAACTACACCGATCCCGTCGTCGGCGGTAAGCCC
GGCGGCACCGGTGGCAACGGCGGC	GACGCCGGAAACCTCGGCGAC
GGCGGTGACGGAGGCAACGGCGGC	AGAGGCGGCTACGGCGGCGTCGGCACCAAGGGCGCCGGAGCCACCGAGCTG
GGTGCCAACGGAGGCGACGGCACC	GATGGCGGCGACGGTGGAGCC
GGCGGTAACGGCGGCTCCGGTGGC	AACGGCGGGGTGATCTCGGGCGCGGCCGGCGAC
GGTGGACGCGGTGGTAACGGCGGC	TGGGGAGGTGACGGGGGCACCGCGCTCGGCAGCGGTGGCGCCGGCACGTTCGACGTCAAC
GACGGGCGCGGCGGGGACGGCGGC	AGCGGCGGGGACGGCGGAGAT
GGCGGAAACGGCGGCAACGGCGGC	GCCGCGGGCACGGCCACCAACGGGGCCGCAGGCACC
GACGGTGTCGGCGGAAACGGCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|183548
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293541
NZ_AP022563.1\|WP_098000893.1\|3941904_3942186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223659
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213224
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173883
NZ_AP022563.1\|WP_098000909.1\|3955000_3955645_+\|LpqN/LpqT-family-lipoprotein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225113
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235728
NZ_AP022563.1\|WP_098000921.1\|3959774_3960623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226322
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|236106
NZ_AP022563.1\|WP_098000911.1\|3955646_3955970_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_AP022563.1\|WP_098001105.1\|3940704_3941826_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.69506e-56
NZ_AP022563.1\|WP_098000899.1\|3944988_3945819_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.09707e-64
NZ_AP022563.1\|WP_098000915.1\|3956727_3957624_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|183548	PRK12478, PRK12478, crotonase/enoyl-CoA hydratase family protein.	0
NZ_AP022563.1\|WP_098000907.1\|3952989_3954999_+\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NZ_AP022563.1\|WP_098001109.1\|3945815_3946787_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.97139e-83
NZ_AP022563.1\|WP_098000905.1\|3952640_3952919_-\|hypothetical-protein	gnl\|CDD\|293541	pfam16936, Holin_9, Putative holin. This is a family of putative holins from Actinobacteria with three TM regions.	7.05969e-21
NZ_AP022563.1\|WP_165776215.1\|3955896_3956565_-\|VTT-domain-containing-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.32285e-47
NZ_AP022563.1\|WP_098000892.1\|3940187_3940742_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	4.48206e-22
NZ_AP022563.1\|WP_098000897.1\|3943583_3944228_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	6.35584e-53
NZ_AP022563.1\|WP_098000901.1\|3946837_3948424_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173883	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.08526e-132
NZ_AP022563.1\|WP_098000903.1\|3952189_3952648_-\|hypothetical-protein	gnl\|CDD\|225113	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms].	0.00336403
NZ_AP022563.1\|WP_098000917.1\|3957662_3959168_+\|FAD-dependent-monooxygenase	gnl\|CDD\|235728	PRK06184, PRK06184, hypothetical protein; Provisional.	9.90697e-94
NZ_AP022563.1\|WP_098000890.1\|3938766_3940191_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226322	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only].	5.98595e-170
NZ_AP022563.1\|WP_098000895.1\|3942186_3943587_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|236106	PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_AP022563.1\|WP_098001107.1\|3944224_3944992_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.8117e-72
NZ_AP022563.1\|WP_098000919.1\|3959164_3959773_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.38279e-14

>NZ_AP022563.1|WP_098000901.1|3946837_3948424_-|ABC-transporter-substrate-binding-protein
MNLRGPRGTVLMLMASLALLAGCATPAGDPESDQIVLAESYELGGYNPVNGYSESGVSPIYDGLYRPSATTDSVVPDLTPALAAREPEPAGPNRWRIPLRTGVVFSDGSSFDSADVVATYAAVADPRVASEISTSVSPIVSLTADGPEAVTVELTTAADPRPYLLIGILPSERVEDAPAADWAVNTAPVGTGPYRLESLRPDQAVMVARDDYWGEPAQVNRLVYTYTPDDNARAQSMVSGAVDGTTLPPRLIDSVRSDEVQTVGVQSADWRGVALPAGNPFTADPAARLAMNLGVDREAIVGDVLRGYGRPASTPVAEAYGDAYNPDARFAFDLDRAKAVLDEAGWRADAGQVREKDGARASFELLYNASDTLRRDLAVAYAAAMKPLGIEVRPRGSSWDEIDTRFGDSAVLLGGGATPYSIDSQVYDTLHTRVANSSPYSNPGNFTAPGLDELLERAVRSAPGPGKDQLYRDIQAGYAGEPSHVFLVFLDHTYSYRDRGWTQTPPIMEPHSHGVSWGPWWNVAAWTR
>NZ_AP022563.1|WP_098001109.1|3945815_3946787_-|ABC-transporter-permease
MRAAGRLLAVRTAIAVPLTVALSAAIFAVASLSPFDPLAAYLGSNYQFATPAQRDAMRAAYGTDQSWYAAWWQWLGGLARGDLGWSSTQSQPVSTVLAERLPFTLALSGAALLTATVLAIVLGCLAGMRRGGVLDRALTGLSVAFAAVPPFVVSLALVVVVAVGLRWLPASGAAAPGADYTVAGVLRYGILPWLALTVSMIPWLLLTTRAAVVASIDSDAVRGARARGVHGWALLRGHIAPVSVLPTLALLGTRLPELIAGAAIVETVFGWPGMAAVLVDSAAALDFPLLAALTVAAAAAVLAGSALSDAAAVAIDPRIRMAG
>NZ_AP022563.1|WP_098000899.1|3944988_3945819_-|ABC-transporter-permease
MSTPTLQRVRSGLTWPWIVLGVIAVAAVGIPWVAGEQVADFSAALAPPSTEHPAGTDHSGYDLLTRTAEGLQMSLLIAVVCAIAATVLGVVIGVAAALVGGWPDAVVMRLVDGVNALPHLVVGIVIAAMWRGAPLAIIASIALTHWPAVARVVRAELLAVAEAGWVETARLAGASRWFVARHHLLPAVTAQALVAMVVLLPHAVWHESTLSFLGVGLSPDRASLGTLLSEARGDVLTGAWWTLAVPAAALVATALAFAMAGATLRSRNRPPTGAVW
>NZ_AP022563.1|WP_098001107.1|3944224_3944992_-|ABC-transporter-ATP-binding-protein
MTFSAALTGLTVDIDLRRGRRCAAVPVLDQVNLEVNAGRVTALIGESGCGKSLVAAALSGLMPPGSRVRGQVRIGDRELRAGDEAGWRALRGRHIGVVPQSAATSLTPVRTVGSQLAEICSRLGADRTPEQLCAAVALPASVVGRYPHELSGGMAQRVAIAAALAGRPALLIADEPTSALDPDNAALVWRLLGEAAADGAAVLVITHDLPSLLRAAVCDEVAVMARGTVLSHEPLEDTLSSADPYLRALLGTVPV
>NZ_AP022563.1|WP_098000897.1|3943583_3944228_-|ATP-binding-cassette-domain-containing-protein
MTGIRAAGVSVTLAGRTVLDGVDLVAPAGAVTGVTGASGSGKTTLLRVLAGLRAPDAGEVRYDGGPVPPSGSIALLAQHPRQVCNPRWTLAQIIAEPAAIRGASSASAARQTLDEVALRVGLEPELLDRYPGQVSDGQLQRACLGRAMLAQARFVLCDEPTAMLDPIATGSVVSVLRDFAAAGAAVVLVSHDPGLVETLADEVLALPRPLGLRT
>NZ_AP022563.1|WP_098000895.1|3942186_3943587_-|dihydrolipoyl-dehydrogenase
MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAIIEPKYWGGVCLNVGCIPSKALLRNAELAHLFTKQAKTFGITGEAEFDYGAAFDRSRKVADGRVAGVHFLMKKNKITEINGYGKFTGANSIEVDLNEGGTESVEFDNAIIATGASTKLVPNTSLSENVVTYEEQIMERELPGSIIIAGAGAIGMEFAYVMKNYGVDVTIVEFLPRALPNEDAEVSKEIEKQYKKLGVKILTGTKVESIRDEGADGSVYVKVSKDGKSDELKADKVLQAIGFAPNVEGFGLDKAGVELTERKAIGIDDYMRTNVSHIYAIGDVTGKLQLAHVAEAMGVVAAETIAGAETLALGDYRMLPRATFCQPQVASFGLTEDQAKDEGYDVVVAKFPFTANGKAHGLGDSTGFVKLVADKKHLELLGGHLIGPDVSELLPELTLAQKWDLTAHELARNVHTHPTLSEAMQECFHGLVGHMINF
>NZ_AP022563.1|WP_098000893.1|3941904_3942186_-|hypothetical-protein
MRAVWVAGLGGLLVGHILWLAGISAAIATSNVSTWVLVVAAASLLLGAAAGWAGRTTWQRRANPNWRVWTAFWWTLPISPVLLSLVVLGVTYL
>NZ_AP022563.1|WP_098001105.1|3940704_3941826_-|GGDEF-domain-containing-protein
MSDGAVGGLLRQWWRQRDDYSWRIEFLRSRGLLPVLRYVIAGIGAVMGVLSVINAVQPPGVDSALLRAGWAVVAVGSLAWAARWALLPWPGVRASAALVVYVDVLMTLSTLLFGDPNLAMSGIPILLCAGGYVVFFHGPRLHLVHIAWCTASVVGIAVWLAATTPDYGLQVAVSRAVIALLVTVCILPALQFGFWLLQDSSMQSLTDPLTELTNRRGLGTAVKRLHEAARADADLSALLIDVDGFKNVNDSLGHAVGDEVLIRTARRIRSAVRGDAVVVRWGGEEFLVLDRISARKAGALAERICAAVSAPAEPAVSVSIGVATCAAGDRDQLDQVIKAADAAMYEAKERGGNCVVVSADGFSPGSPAVRPAW
>NZ_AP022563.1|WP_098000892.1|3940187_3940742_+|carboxymuconolactone-decarboxylase-family-protein
MTAPDPYPVRVAPGGFKELGPINWVAAKLGARGIRAPRFSLFNVLGRHRLLFWAWLPLSGYLLYAGKLPRRDAEIVILRVGHLRGCEYELQQHRRLARSRGLDADTQVRIFTGPDADGLSDRERTLITATDEFVVTRGVSGQTWQRLATHLSTTQLIEFCMLAAQYDGLAATITTLGVPLDFPD
>NZ_AP022563.1|WP_098000890.1|3938766_3940191_+|helix-turn-helix-domain-containing-protein
MAKTFVGARLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVPVLLRITEVFGVDATFFASQDDTRLIAELREVLLDRDLDVDADAAEVADMVGAHPALARAMVNLHRRYQLATTQLAAATEGRFDDGSGSGSGAITMPHEEVRDYFYQRQNYLHDLDTAAEELTSGMRIQRGELAGDLSDRLRFVHGVTIRRHDLGESVLHRFDPGSKTLHLSAQLAPGQTVFRMAAELAYLEYGDLIEKLTDDGKFTSDESRRLARMGLANYFAAATVLPYGQFHQVAEQFRYDIERLSAYYSASYETICHRLSTLQRPSMRGVPFSFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANPGKILVQIAEMPDGRSYMWVARTVERRASRYGQPGKTFAIGLGCELRHAHRLVYSEGLVTSDSNVRATPIGAGCRVCERDNCPQRAFPALGRALDIDEHRSTVSPYLVRPA
>NZ_AP022563.1|WP_098000903.1|3952189_3952648_-|hypothetical-protein
MADIDRDGGPGEPTEAFTPEFTGAFTAASVLDQPASEPDVSPHPAQPVLVPGAAQYLSRWRFVFVMLAVWVVAAAAGAGLYYWWFHSLDKTMPVFVVLVYVVAATVGSLLTALVQNRPPIAALAIGLMSAPMASVAGAALLYGGYVFGFLSV
>NZ_AP022563.1|WP_098000905.1|3952640_3952919_-|hypothetical-protein
MIPLPRASALAGVMIVGVAIGMIGAIAAAVEITATVRPDIVIALVVGIPGVIGLITILVSKRRWVTAVGAMILAIGPGWFGALTAIQVATGG
>NZ_AP022563.1|WP_098000907.1|3952989_3954999_+|S9-family-peptidase
MADTEDPHLWLEDVTGDDALAWVRAHNEPTLAELGGERFEQMRADALEVLDTDTRIPYVRRRGEHLYNFWRDANNPKGVWRRTTLESYLQEQPEWDVVIDVDALAAADDTNWVWAGAHVIEPDFSRALVSLSRGGSDAAIVREFDMVTRQFVTDGFQLPEAKSQVGWADHDTLLVGTDFGDGSLTDSGYPRQVRRWRRGQPLAEAELVFSGSSDDVVVAASVDRTEGFERTLIARALDFFNEEVYELRDGELIRIDTPTDASISLHREWLLIELRTDWQRGGGLYRAGSLLAAPYDEFLAGTAELTTVFEPDAHTCLHHYAWTRDHLVVVTLADVASRVEIYTPGSWRSEPVRGLPENTNTVIVAADEHGDEIFLDSSGFDTASRLLHGTAGAELREIKRAPSFFDAADLEVTQHFATSADGTSVPYFVVGHRHSQGPGPTLLGGYGGFEVARTPSYDGVLGRLWLSRGGTYVLANIRGGGEYGPTWHTQAMREGRHLVAEDFAAVAKDLVARGITTVEQLGAQGGSNGGLLMGIMLTQYPDLFGALVCSVPLLDMRRFHLLLAGASWVAEYGNPDDPDDWAFISKYSPYQNISAHHRYPPVLITTSTRDDRVHPGHARKMTAALEAAGHPVLYYENIEGGHAGAADNPQTAFRAALIYEFLLRILDGS
>NZ_AP022563.1|WP_098000909.1|3955000_3955645_+|LpqN/LpqT-family-lipoprotein
MSTMTRALVLIACTATLLVTGCAREITGTPVLAGGQDAGGPSGSSAECTTVDAPLADIPAVSPREPQLRIPVPAGWKRNSMMDSQVIRYAIVAEELIANGFAPNAVVTLEQARGVADPAEVFDENRANLIRMMNATDLQTEDNTTCGLPSETTTYMAPPMGPAPRRPIIMHAVVAQSGNATYLATVTIQTSDGANPTYQRDAEQIVDGFQMLLR
>NZ_AP022563.1|WP_098000911.1|3955646_3955970_+|hypothetical-protein
MDQASNVLLIAGAVALVLAAVVPGRDTAHLPARAVKRRIYWSGSAIGAALLFAGGLPDLQSAVAFLAAAAILMTGWAYFRTPYLKIGGRIRSAQPAHRIPDPPAPGR
>NZ_AP022563.1|WP_165776215.1|3955896_3956565_-|VTT-domain-containing-protein
MELLGGPGAGLAIFLENIFPPLPSEVILPMAGFAAHLGVLSVAAAIIWTTLGSVLGAWLLYWLGAKLGHDRMRRVLSRFPLIDTEDIDKSSAWFARHGTKAVFFGRMLPLFRSFISVPAGTERMNFLVFTLFTALGSLVWNSVFVGLGYGLGANWRYVEPYSAIFQYIVLAVVAALVVRFVWSRLRRRRQRADDDAMAASDRVPADPVSGALAAPNESAHRS
>NZ_AP022563.1|WP_098000915.1|3956727_3957624_+|crotonase/enoyl-CoA-hydratase-family-protein
MASFETILYRTQPPVATITLNRPEQLNTIVPPMPDEIEAAVGLAERDPDIKVIVLRGAGRAFSGGYDFGGGFTHWGEAMNTDGRWDPGKDFAMVSARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADLVIASDDAVIGTPYSRMWGAYLTGMWLYRLSLAKVKWHALTGEPLTGREAAAVELINESVPFDRLEARVAEIAGKLATIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALRFVDTAATDGVRAAVTRRDGPWGDYSQAPPHRRPDPSHIIEP
>NZ_AP022563.1|WP_098000917.1|3957662_3959168_+|FAD-dependent-monooxygenase
MIDTDVVVVGAGPTGLTLACGLRLHGVDVRVVDRAAGPATTSRANFLHARGSEVLGRIGALGSLPDESLRAMRITNYLGDRPLATLEFGDPAMHTAAPPMVISQAKVEAALRARLADLGVTPEWGHGLAGLRSDGDTVLAELDDGTGIRARWLVGCDGTSSTTRTLAGIGFPGVKLTERWLLADLRLDWDVDRTGTTGWVHPAGVVGAMPMPDESGGDNLWRLFAYDPGLAQRPDQDEILERIRRILPERTGRQARIDGADWLSVFTVHRRLADRYRQGRVFIAGDAAHAHAPFGGQGMLTGIGDAENLAFKLALVVHARADEPLLDSYEAERRPLATEVLRGTSAVTRVNIANHPVGRFLRDRVAARIFRLPAVQRWTTYTASQLWVSYRKGPLGGSGRKPRPGDRVPDLACRRRDGTPTSVHRELGGRFVLLLPAGADGQAPIDVARTHLGDFVTGLHHTGEQMWLIRPDAHLAWRGAAGDVAGLSRWLTDALHTGRAR
>NZ_AP022563.1|WP_098000919.1|3959164_3959773_+|TetR/AcrR-family-transcriptional-regulator
MTAGAVGRGRPRDAEADRAILRAGLELFIERGVEGTSIEQIAKKAGVGKPTVYRRWSGKEELIAAAMETLVADEVQWASSEQIATESPYALVEAAIDGAAAATTTAQYRALVARVFGSAVSHPELMATYWQHYIVPRRKLAAALLERARDLGTVSADTDVEVAIDMMVGAITYRVLQPDPPDTPEMRRYLRAVYRQIGLLPS
>NZ_AP022563.1|WP_098000921.1|3959774_3960623_-|hypothetical-protein
MRFLAALLLWLLTTVALAAAVPALWAQATVVDEDGYASLAASAARDPRLQQAMASELATQAVTLAEDNGYSLNPRLVGQVADSYTHNEGFAGQFGQANRIAHRWMFTGAVPSGNSTDQWLIDVAPMLNDPSFDATLGSLDLRVPDTMTVPITVDSPELRPGKLRWLASWGPWISIGAAAVTVLLALLTVAAARSRGKALTALGVSALLVGAAGWAGIEVADRPLDAALDRTTGDIRTVAEVMVESAIDSLHHWLNVTIVAGVALVVLGAVAAGLGSVLRRGT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP022563_3	3.1\|3951441\|15\|NZ_AP022563\|CRISPRCasFinder	3951441-3951455	15	NZ_AP022563.1	1707604-1707618	0	1.0
NZ_AP022563_1	1.1\|2243214\|20\|NZ_AP022563\|PILER-CR	2243214-2243233	20	NZ_AP022563.1	2894430-2894449	2	0.9

1. spacer 3.1|3951441|15|NZ_AP022563|CRISPRCasFinder matches to position: 1707604-1707618, mismatch: 0, identity: 1.0

accgcgaccaccccg	CRISPR spacer
accgcgaccaccccg	Protospacer
***************

2. spacer 1.1|2243214|20|NZ_AP022563|PILER-CR matches to position: 2894430-2894449, mismatch: 2, identity: 0.9

acggtgccgtccgcgccgtg	CRISPR spacer
acggtgccgtcgccgccgtg	Protospacer
***********  *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022563_2	2.3\|3950814\|21\|NZ_AP022563\|CRISPRCasFinder	3950814-3950834	21	MT684592	Microbacterium phage Aesir, complete genome	43517-43537	1	0.952
NZ_AP022563_2	2.5\|3950934\|21\|NZ_AP022563\|CRISPRCasFinder	3950934-3950954	21	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	433388-433408	1	0.952
NZ_AP022563_2	2.5\|3950934\|21\|NZ_AP022563\|CRISPRCasFinder	3950934-3950954	21	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	80938-80958	2	0.905
NZ_AP022563_2	2.5\|3950934\|21\|NZ_AP022563\|CRISPRCasFinder	3950934-3950954	21	NC_008538	Arthrobacter sp. FB24 plasmid 2, complete sequence	24242-24262	2	0.905
NZ_AP022563_2	2.5\|3950934\|21\|NZ_AP022563\|CRISPRCasFinder	3950934-3950954	21	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	20023-20043	2	0.905
NZ_AP022563_4	4.1\|3951633\|24\|NZ_AP022563\|CRISPRCasFinder	3951633-3951656	24	AY986977	Xanthomonas campestris pv. pelargonii phage Xp15, complete genome	43990-44013	3	0.875
NZ_AP022563_4	4.1\|3951633\|24\|NZ_AP022563\|CRISPRCasFinder	3951633-3951656	24	NC_007024	Xanthomonas phage Xp15, complete genome	43990-44013	3	0.875
NZ_AP022563_1	1.2\|2243259\|26\|NZ_AP022563\|PILER-CR	2243259-2243284	26	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	134451-134476	4	0.846
NZ_AP022563_1	1.2\|2243259\|26\|NZ_AP022563\|PILER-CR	2243259-2243284	26	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	293335-293360	4	0.846
NZ_AP022563_1	1.2\|2243259\|26\|NZ_AP022563\|PILER-CR	2243259-2243284	26	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	277337-277362	4	0.846
NZ_AP022563_4	4.1\|3951633\|24\|NZ_AP022563\|CRISPRCasFinder	3951633-3951656	24	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	70296-70319	5	0.792
NZ_AP022563_4	4.1\|3951633\|24\|NZ_AP022563\|CRISPRCasFinder	3951633-3951656	24	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	27247-27270	5	0.792
NZ_AP022563_4	4.1\|3951633\|24\|NZ_AP022563\|CRISPRCasFinder	3951633-3951656	24	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	22702-22725	5	0.792
NZ_AP022563_2	2.9\|3951165\|36\|NZ_AP022563\|CRISPRCasFinder	3951165-3951200	36	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1075577-1075612	7	0.806
NZ_AP022563_2	2.6\|3950979\|33\|NZ_AP022563\|CRISPRCasFinder	3950979-3951011	33	MH588547	Caulobacter phage CcrSC, complete genome	291044-291076	9	0.727

1. spacer 2.3|3950814|21|NZ_AP022563|CRISPRCasFinder matches to MT684592 (Microbacterium phage Aesir, complete genome) position: , mismatch: 1, identity: 0.952

gacgccggaaacctcggcgac	CRISPR spacer
gacgccgggaacctcggcgac	Protospacer
********.************

2. spacer 2.5|3950934|21|NZ_AP022563|CRISPRCasFinder matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.952

gatggcggcgacggtggagcc	CRISPR spacer
gatgccggcgacggtggagcc	Protospacer
**** ****************

3. spacer 2.5|3950934|21|NZ_AP022563|CRISPRCasFinder matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 2, identity: 0.905

gatggcggcgacggtggagcc	CRISPR spacer
catggcggcgacggtggagcg	Protospacer
 *******************

4. spacer 2.5|3950934|21|NZ_AP022563|CRISPRCasFinder matches to NC_008538 (Arthrobacter sp. FB24 plasmid 2, complete sequence) position: , mismatch: 2, identity: 0.905

gatggcggcgacggtggagcc	CRISPR spacer
catggcggcgacggtggagcg	Protospacer
 *******************

5. spacer 2.5|3950934|21|NZ_AP022563|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 2, identity: 0.905

gatggcggcgacggtggagcc	CRISPR spacer
catggcggcgacggtggagcg	Protospacer
 *******************

6. spacer 4.1|3951633|24|NZ_AP022563|CRISPRCasFinder matches to AY986977 (Xanthomonas campestris pv. pelargonii phage Xp15, complete genome) position: , mismatch: 3, identity: 0.875

aacggtggcgacgtgcttggtggc	CRISPR spacer
caaggtggcgacgtgcttggtgcc	Protospacer
 * ******************* *

7. spacer 4.1|3951633|24|NZ_AP022563|CRISPRCasFinder matches to NC_007024 (Xanthomonas phage Xp15, complete genome) position: , mismatch: 3, identity: 0.875

aacggtggcgacgtgcttggtggc	CRISPR spacer
caaggtggcgacgtgcttggtgcc	Protospacer
 * ******************* *

8. spacer 1.2|2243259|26|NZ_AP022563|PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 4, identity: 0.846

ccggtcgtcgcgaacagtccggcccg	CRISPR spacer
gcggtcctcccgaacagtccggccgg	Protospacer
 ***** ** ************** *

9. spacer 1.2|2243259|26|NZ_AP022563|PILER-CR matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 4, identity: 0.846

ccggtcgtcgcgaacagtccggcccg	CRISPR spacer
cgcgtcgtctcgaacagtccgtcccg	Protospacer
*  ****** *********** ****

10. spacer 1.2|2243259|26|NZ_AP022563|PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 4, identity: 0.846

ccggtcgtcgcgaacagtccggcccg	CRISPR spacer
gcggtcctcccgaacagtccggccgg	Protospacer
 ***** ** ************** *

11. spacer 4.1|3951633|24|NZ_AP022563|CRISPRCasFinder matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 5, identity: 0.792

aacggtggcgacgtgcttggtggc	CRISPR spacer
gtaggtggcgacgtgcttggtgca	Protospacer
.  *******************

12. spacer 4.1|3951633|24|NZ_AP022563|CRISPRCasFinder matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 5, identity: 0.792

aacggtggcgacgtgcttggtggc	CRISPR spacer
gtaggtggcgacgtgcttggtgca	Protospacer
.  *******************

13. spacer 4.1|3951633|24|NZ_AP022563|CRISPRCasFinder matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.792

aacggtggcgacgtgcttggtggc	CRISPR spacer
gtaggtggcgacgtgcttggtgca	Protospacer
.  *******************

14. spacer 2.9|3951165|36|NZ_AP022563|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.806

gccgcgggcacggccaccaacggggccgcaggcacc--	CRISPR spacer
acctcgggcacggccaccagcggggccac--gctccgg	Protospacer
.** ***************.*******.*  ** **

15. spacer 2.6|3950979|33|NZ_AP022563|CRISPRCasFinder matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 9, identity: 0.727

aacggcggggtgatctcgggcgcggccggcgac----	CRISPR spacer
ggcggcgggatgatctcgcgcg----cggcgatttcg	Protospacer
..*******.******** ***    ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2576590 : 2584436

Lactococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098005919.1\|2576590_2578759_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.7e-208	51.7
WP_098005916.1\|2578725_2579184_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	1.0e-10	35.0
WP_098005914.1\|2579217_2579472_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.9e-20	65.8
WP_098005912.1\|2580045_2580588_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.1e-09	34.1
WP_098005957.1\|2580675_2581284_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_098005955.1\|2581280_2582369_+	DNA polymerase IV	NA	NA	NA	NA
WP_098005910.1\|2582378_2583545_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	4.9e-49	35.3
WP_098005908.1\|2583548_2584436_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.0e-06	38.5

DBSCAN-SWA_2

4994115 : 5058716

Mycobacterium_phage(14.29%)

tRNA,holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098002079.1\|4994115_4994586_-\|transposase	transposase	NA	NA	NA	NA
WP_082948431.1\|4996352_4996550_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_098002078.1\|4998176_4999346_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_098002077.1\|4999342_5000290_-	metallophosphoesterase	NA	NA	NA	NA
WP_163722347.1\|5000338_5002801_-	transglycosylase/D,D-transpeptidase PonA2	NA	NA	NA	NA
WP_098002075.1\|5003095_5003452_+	WhiB family transcriptional regulator	A0A0K1Y796	Mycobacterium_phage	1.5e-09	45.9
WP_098002074.1\|5003463_5004597_-	ArsA family ATPase	NA	NA	NA	NA
WP_098002073.1\|5004610_5005648_-	ArsA family ATPase	NA	NA	NA	NA
WP_098002231.1\|5005722_5005884_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_098002072.1\|5005880_5006342_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	6.1e-19	41.5
WP_098002230.1\|5006358_5007135_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005138643.1\|5007191_5007866_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_098002071.1\|5007969_5008302_-	hypothetical protein	NA	NA	NA	NA
WP_098002070.1\|5008417_5009206_+	endonuclease III	NA	NA	NA	NA
WP_098002069.1\|5009216_5009867_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_098002068.1\|5009835_5010672_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_098002067.1\|5010668_5011862_+\|protease	acid resistance serine protease MarP	NA	NA	NA	NA
WP_098002066.1\|5011889_5012849_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_098002065.1\|5012848_5013352_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_098002229.1\|5013559_5014210_+	peptidase	NA	NA	NA	NA
WP_098002064.1\|5014213_5016175_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	9.7e-82	38.6
WP_098002063.1\|5016301_5017063_+	oxidoreductase	NA	NA	NA	NA
WP_098002062.1\|5017487_5018354_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_098002228.1\|5018807_5019887_+	AAA family ATPase	NA	NA	NA	NA
WP_163722349.1\|5019883_5021059_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_165776279.1\|5020952_5022404_+	type II secretion system F family protein	NA	NA	NA	NA
WP_098006240.1\|5022429_5022630_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_163722497.1\|5022653_5022956_+	pilus biosynthesis protein TadE	NA	NA	NA	NA
WP_098006242.1\|5022990_5023287_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_098006265.1\|5023337_5024519_+	serine/threonine protein kinase	A0A2R3ZRI5	Marseillevirus	2.6e-13	31.2
WP_098006244.1\|5024522_5025596_-	DUF5593 domain-containg protein	NA	NA	NA	NA
WP_098006246.1\|5025592_5027959_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_006243848.1\|5028258_5028462_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	1.5e-14	56.2
WP_098006248.1\|5028585_5029176_+	hypothetical protein	NA	NA	NA	NA
WP_098006267.1\|5029315_5032132_+	type I DNA topoisomerase	J3E777	Acanthamoeba_polyphaga_lentillevirus	2.5e-99	34.9
WP_098006251.1\|5032135_5033764_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.4e-17	31.2
WP_098006253.1\|5033846_5035061_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_098006269.1\|5035270_5036995_-	hypothetical protein	NA	NA	NA	NA
WP_098006255.1\|5037042_5038035_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	8.2e-37	31.8
WP_098006271.1\|5038051_5039320_-	hypothetical protein	NA	NA	NA	NA
WP_098006257.1\|5039316_5040663_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_098006259.1\|5040659_5044607_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	2.2e-32	24.2
WP_163722351.1\|5044621_5045674_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_098005046.1\|5046038_5047052_+	TerC family protein	I7HPH5	Enterobacteria_phage	1.1e-36	33.8
WP_098005045.1\|5047059_5047581_-	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA
WP_098005044.1\|5047696_5048182_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.3e-29	44.4
WP_098005043.1\|5048266_5049625_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_098005054.1\|5049621_5050692_+\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_098005042.1\|5050670_5051627_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_098005041.1\|5051672_5052266_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	3.7e-08	28.0
WP_098005040.1\|5052284_5054504_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_098005039.1\|5054500_5055229_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_098005038.1\|5055270_5056215_-	alpha/beta hydrolase	G1BRG0	Mycobacterium_phage	8.4e-07	32.8
WP_098005037.1\|5056364_5058716_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	3.6e-107	45.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022563

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection