CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022615	Mycobacterium heidelbergense strain JCM 14842	13 crisprs	cas3,DinG,csa3,DEDDh,csf1gr8,cas4,WYL	6	5	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022615_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_1

282096-282174

Orphan

Consensus_repeat	Method
CGGCGGGTCGCCGCCAAAAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_1

>merge|NZ_AP022615|1|282096-282174|CRISPRCasFinder
CGGCGGGTCGCCGCCAAAAAATCCGGCCGCGATCGCAAGCGCGGCGAAGCCGGGCACGGCGGGTCGCCGCCAAAAAATT

>NZ_AP022615|1|1|282096-282174|CRISPRCasFinder
CGGCGGGTCGCCGCCAAAAAATC	CGGCCGCGATCGCAAGCGCGGCGAAGCCGGGCA
CGGCGGGTCGCCGCCAAAAAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083072720.1\|281251_282052_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_AP022615.1\|WP_083072713.1\|273607_274510_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_AP022615.1\|WP_071511340.1\|286183_286513_+\|PE-PGRS-family-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072875.1\|274654_275407_-\|FAD-dependent-thymidylate-synthase	unknown	unknown	gnl\|CDD\|234847
NZ_AP022615.1\|WP_083072876.1\|278683_279916_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NZ_AP022615.1\|WP_083072721.1\|282206_282947_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|366780
NZ_AP022615.1\|WP_083072718.1\|279975_280677_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274008
NZ_AP022615.1\|WP_083072719.1\|280758_281235_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_AP022615.1\|WP_083072722.1\|283025_284111_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_AP022615.1\|WP_083072727.1\|290177_290633_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_AP022615.1\|WP_083072726.1\|289462_289693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072728.1\|290629_291094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072717.1\|277286_278687_-\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|280533
NZ_AP022615.1\|WP_083072715.1\|275842_276079_-\|antitoxin	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072716.1\|276240_277290_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341155
NZ_AP022615.1\|WP_083072723.1\|284107_285286_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_AP022615.1\|WP_083072729.1\|291090_291825_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_AP022615.1\|WP_083072724.1\|285282_286047_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975
NZ_AP022615.1\|WP_083072714.1\|275447_275846_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350221
NZ_AP022615.1\|WP_083072725.1\|286957_288301_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083072720.1\|281251_282052_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_AP022615.1\|WP_083072713.1\|273607_274510_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	9.46134e-145
NZ_AP022615.1\|WP_083072875.1\|274654_275407_-\|FAD-dependent-thymidylate-synthase	gnl\|CDD\|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	7.673e-100
NZ_AP022615.1\|WP_083072876.1\|278683_279916_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	6.44317e-107
NZ_AP022615.1\|WP_083072721.1\|282206_282947_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	1.14825e-58
NZ_AP022615.1\|WP_083072718.1\|279975_280677_-\|DivIVA-domain-containing-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.09358e-05
NZ_AP022615.1\|WP_083072719.1\|280758_281235_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	1.04534e-63
NZ_AP022615.1\|WP_083072722.1\|283025_284111_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	4.11254e-41
NZ_AP022615.1\|WP_083072717.1\|277286_278687_-\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	2.73199e-141
NZ_AP022615.1\|WP_083072716.1\|276240_277290_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341155	cd17266, RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) TRD2-CR2. Staphylococcus aureus subsp. aureus MSHR1132 S subunit (S.Sau1132ORF3780P) recognizes 5'... CAAGNNNNNRTC ... 3'. The RM system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example S.Sau1132ORF3780P-TRD1 recognizes CAAG/CTTG and S.Sau1132ORF3780P-TRD2 recognizes GAY/RTC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	5.84e-51
NZ_AP022615.1\|WP_083072723.1\|284107_285286_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.68483e-136
NZ_AP022615.1\|WP_083072729.1\|291090_291825_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.9502e-105
NZ_AP022615.1\|WP_083072724.1\|285282_286047_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	1.56371e-124
NZ_AP022615.1\|WP_083072714.1\|275447_275846_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350221	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Pyrobaculum aerophilum proteins, Pae0151 and Pae2754, and homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.99318e-24
NZ_AP022615.1\|WP_083072727.1\|290177_290633_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	8.15032e-13

>NZ_AP022615.1|WP_083072720.1|281251_282052_-|thymidylate-synthase
MPIATPYEDLLRLVLEAGAAKSDRTGTGTRSLFGRQIRYDLSAGFPLLTTKKVHFKSVVYELLWFLRGDSNVAWLREHGVTIWDEWASDTGDLGPVYGVQWRSWPTPSGEHVDQISAALDLLRTDPNSRRIIVSAWNVGDIPRMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLGVGEFVWTGGDCHIYDNHVEQVRLQLSREPRPYPELFLAHRDSIFDYTYDDVVVKNYDPHPAIKAPVAV
>NZ_AP022615.1|WP_083072719.1|280758_281235_-|dihydrofolate-reductase
MGLVWAQSTSGVIGRGGDIPWRVPEDMARFKQVTMGHTVVMGRRTWESLPASVRPLPGRRNVVLSRQTGYPADGAEVLGSLEQALTEPETWVIGGGQIYLLALPLATRCEVTEVDVDLPREDDDALAPVLDEAWLGATGEWQVSRSGLRYRFHSYRRP
>NZ_AP022615.1|WP_083072718.1|279975_280677_-|DivIVA-domain-containing-protein
MITEPAKTFPRVFRGYDPAAVDASIEALTAKQQLLLNDVKSLEARLTESDDETAALRKEVAVLTDTSPSPHAVQLRMANMLRRTVDEVSQMQAEAQAEAEALVASAEAEARAARREHEEQMADLAARREALEAEYADAKKKLDAELAGMRAETQSAIDEAWREARREADHYREQARRAADEASRQRIKILEQLAQVHRDLETVPDALASAYREQKDLPEASVVVPLDEKITAG
>NZ_AP022615.1|WP_083072876.1|278683_279916_-|winged-helix-turn-helix-domain-containing-protein
MRSRTLTAAQARRLAVAAQGFSEPRPGGPITRAHLKSLISRIQVLQLDSVSVAVRAHYAPVFSRLGPYDRDVLDRAAWSHSARSSRLLVEYWAHEAALMAVDDWPLLRWRMRQYTHGRWGTHIVRANPQLADKIVAAVAELGPSTAGQIEAHLAAEPRGPRGSWWGSRSDTKWVAEALFASGVLTTATRVGFARHYDLVERVLPPRVLAREVDDDEAVRELTLRAAGALGVGTEADLRDYFRLSARQVKPALADLLAGGEIERVDVDGWSAPAYLRAGRTVPRRDRGTALLCPFDPLIFFRPRVERLFGFHYRIEIYTPAAKRQYGYYVWPLLLNGELVARVDLKADRASDSLRVVGAFGEPDQPKVRVAAALAGELESMASWLGLGGVSVSGRGDLAADLRAAAKRAGR
>NZ_AP022615.1|WP_083072717.1|277286_278687_-|type-I-restriction-modification-system-subunit-M
MTASQELKATLWKAAEKLRGSLSASQYKDVILGLVFLKHVSEKHWKPLADNAKASNIGRLVDDAMGAVMAANPALAGMLPRLYENLDRRRLGELIELLDGARFGRDGRRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEVLEPSSGRVYDPCCGSGGMFIRTEQFVAEREGDPAKVAVYGQESVEQTWRMAKMNLAVHGIDGAGLGARWGDTFAGDQHAGVQMDYVMANPPFNIKDWARDERDPRWRFGVPPATNANFAWIQHILSKLALGGKAGVVMANGSMSSNTLGEGDIRARIVEADLVSCMVALPGQLFRSTSIPVCLWFFARDKGHRSRQVLFIDARGLGYLAGRAERALTSEEVIRIGDTYHAWCGSESSAAKGLTYQDVPGFCTSATLDDIRAAGYTLTPGRYVGAPAAADDGEPVDERIARLTKDLLAALDESARLDAVVREQVERLR
>NZ_AP022615.1|WP_083072716.1|276240_277290_-|restriction-endonuclease-subunit-S
MKARLGEYLDFSSGTSPPHRASGGRFRVYGANGAIGYAAERNASGPLIVLGRVGSYCGSVRYCDSDVWVTENALVCRAKDPRETRYWYYALHTCGLGDHRAGSGQPLLNQRILRDISVRAVAAPERVRIAEVLGALDDKIAANDRVIAAAESLMVAIAESVAEYAPLSSLASRSAAFVSPDQFDDVVAHFSLPAFDDGARPRPVAAGSVRSGKFLLSRPCVLVAKLNPRIPRIWNVVALPSHMALASTEFVVLAPVGVDTSALWSALRQPDVAATLRQRAGGTSGSHQRIRPRDLLEVRVRDVRRLAPAAARTITGLGALCHARREESARLSALRDALIPPLTSGKVRI
>NZ_AP022615.1|WP_083072715.1|275842_276079_-|antitoxin
MATIQIREIPEDAYEVIRKRARVAGRSIQSYMRDWVIDFASRSTAEEALAAMEAAREESAKPGATTESILADLAADRR
>NZ_AP022615.1|WP_083072714.1|275447_275846_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSDYVIDASALVLALVGKTDAADALRARLPEMRRHAPHLIDAEVGNVLRRHEQAGHIGTREADTALRVAGLLIDDRYPHVGALARRAWSLRHNFSFYDALYVALASHLDVPLLTADTRLSRAPGLACRAELV
>NZ_AP022615.1|WP_083072875.1|274654_275407_-|FAD-dependent-thymidylate-synthase
MAETAPLRVQLIARTEFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYIEHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEGDSRVVIPPGMDDDPELRRILVAAADASRATYTELLARLEAKFAGEPSAVLRRKQARQAARAVLPNATETRIVVTGNYRAWRHFVAMRASEHADVEIRRLAIECLRQLVGVAPAVFADFEVSTLADGTEVATSPLATEA
>NZ_AP022615.1|WP_083072713.1|273607_274510_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSTVGFDAPARLGTLLTAMVTPFGADGSLDTAAAARLANHLVDAGCDGLVVSGTTGESPTTTDDEKRELLRVVLEAVGDRARVVAGAGTYDTAHSVRLARACAAEGAHGLLVVTPYYSKPPQSGLIAHFTAVADATELPVLLYDIPPRSVIPILPETIHALAAHPNIVGIKDAKGDLHGGGQIIAETGLAYYSGDDALNLPWLAMGATGFISVIAHAAAGQLRELLSAFGSGDVSTARKINVNLAPLCNAMARLGGVTMSKAGLRLQGIDVGDPRLPQMPATPEQVDALAADMRAASVLR
>NZ_AP022615.1|WP_083072721.1|282206_282947_+|dienelactone-hydrolase-family-protein
MPTITDTVTTPDGSCPVRLFTPEGPGPWPGVVMYPDAGGVRDTFEQMAAKLAGFGYAVLLPDVYYRSGDWAPFDMATAFTDASERNRLFSMIGSITPDRMASDAAAFFDYLAARPEVSGERFGVCGYCMGGRTSVVVAGRLPDRVAAVASFHGGGLVTDTADSPHLLADRMTATVYIGGAEDDASFTPDHAEALKKALTAAGVRHTIEWYSAAHGFAVPDNAPYDEAAAERHWTAMVDTFGSALAP
>NZ_AP022615.1|WP_083072722.1|283025_284111_-|acyl-CoA/acyl-ACP-dehydrogenase
MSDLLYSDTEEALRDSVRHLFAERCPPESVVRAYDAVPQDFSGVWRTLAAELGVAGLLVPESLGGAGAGAREAAVVMEEIGRSVAPVPFLSSAVLATVALLRAGDTETVPALAQGVVTAALVVPLSTAPGDPVAGVGADGLTGVVTSVAGAGETDVLVVPVAGPDGLELHTVSRTAAGVEVSPVLALDMTRPLATVRFSGAASSRVGPADVAVAEALQTGAALLASEQLGVARWCFDTTLAYVKQRKQFGRAIGSYQAIKHRLADLWFEVGAATAAARYAADTCARGDDDAGIAAAIAQAYCGGVAVHAAEECIQLHGGIGMTWEYPAHLYLKRAKSDQLALGTAYRHRARLAELVDLPVS
>NZ_AP022615.1|WP_083072723.1|284107_285286_-|acyl-CoA-dehydrogenase-family-protein
MSPDLDARVQALLDEHDPATTDPRDFLGAQYDSGLAWVYLPQGFGGLGLPRKAQERVDARLTAAGAPVGGTVKNFIGMGMAAPTIAAFGTDEQRRKFLRPLFTGEHVYCQLFSEPGAGSDLAGVATRAVRDGDDWIVNGQKVWTSMAQHAQMAILVARTDPTVPKHAGLTYFLCDMTQPGVDVRPLRQITGEAEFNEVFLTDVRVPDANRLGAVGGGWRVATTTLNNERVAIGSRPGVPREGGIIGKVTDAWRDDPGLRNPAMHDELMRLWVDAEVLRLAGERLRQQAVAGQPGPEGAGMKIAFASLAQAISGFELELHAESGLHYDDWTMRRTEVVDLIGREPGYRYLRARGNSIEGGTSEILRNTISERILGLPGEHRVDKDVPWKDLDR
>NZ_AP022615.1|WP_083072724.1|285282_286047_-|SDR-family-oxidoreductase
MTSLDLTGRTAIITGASRGIGLAIAQQLAAAGANVVLTARKQEAADEAAAQVGENALGVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLIDQDHARFAKIFDVNLWAPLLWTSLVVKSWMGEHGGAIVNTASIGGLHQSPAMGLYNATKAALIHVTKQLALELSPRVRVNAIAPGVVRTRLAEALWKDHEDPLASSIALGRIGEPVDVAGAVAFLVSDAASWITGETMVIDGGLLLGPAQGFRQ
>NZ_AP022615.1|WP_071511340.1|286183_286513_+|PE-PGRS-family-protein
MKPLVVAGAVAAAIAAAPMAAADAFAAGPAMTVPAPTHVIFKDDPSGGGCDNNGNCGSGGQNNGPGGGPGGQGCVPGVGCGSGGQFAGPGGVPGGQGCLPGVGCGSGHG
>NZ_AP022615.1|WP_083072725.1|286957_288301_-|hypothetical-protein
MLVLLHGYITTVNCLFCYRNSSNIFHGYIQFVIIQNVVKEMVVDLAARPHITAGIALASIAVLAAGPMAQHLPDLRSAAHLSEVSVSAIQLTDASGVLDLFAGVENELASLVGGASAAAVPAAALSDVFSPITQSLIVQTWANTFTHAGANLQFILNQWSATPFPVLQQLAANGVQYASDYVGPYQIAANALVKLIPTLGPAVHTGLADIAAGKVSTGISALFNSLLGGPIVNVGLPLVNILSIPGYITQNFANATNYLLTTGVPNIATYALDAVGVSTQGLGASLQATYNAWSAGDTLGALTNLLNTPGAVTNAVINGFQANVRIGITNGLLSSGAFPGTSSIPTGLLNEMLNTLDPGLAKAIVAPNAQNIVSGGSFVTAIQNFANQLINGWPSLNSAIGAITGDISGSVTSLLRGLPSTLSSLPSILGNIATHLGTLVIQLLSLL
>NZ_AP022615.1|WP_083072726.1|289462_289693_+|hypothetical-protein
MAKTITLRLSDHQYDLIKRYAGNDGQSMNAWIEALVAVEDMRRRCTAHDQWMSNNPEAVTFAETLADQNLEALSRR
>NZ_AP022615.1|WP_083072727.1|290177_290633_-|flavodoxin-family-protein
MSKTLLIIHHTPSPHCQELFEAVVAGATDPEIEGVEVVRRPALTVSPVEMLEADGYLLGSPANLGYISGALKHAFDQSYYQILDSTRGRPYGLWLHGNEGTEGAERAVDGITAGLGWVKAAETVVVSGKPDKSDIEACWNLGATVAAQLMG
>NZ_AP022615.1|WP_083072728.1|290629_291094_-|hypothetical-protein
MKGTARTVRIQLLIAFMCVAMLAYMALLGRAAIAMIGSGRAAAVGLGLALLIMPIIGLWAMIATLRAGFAHQRLARLIADDGMELDTSALPRRPSGRIRRDAADALFATVRTEVEADPDDWRRWYRLARAYDYAGDRRRAREAMRTAVEMQGRQ
>NZ_AP022615.1|WP_083072729.1|291090_291825_-|4-hydroxy-tetrahydrodipicolinate-reductase
MRVGVLGAKGKVGSTMVAAVQAAEDLTLSAEVDAGDPLSLLTEADTEAVIDFTHPDVVMDNLKFLIDNGIHAVIGTTGFTEERLDQVRSWLAGRNVGVLIAPNFAIGAVLSMRFAKQAAPFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHSVRLAGLVAHQEILFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIKERPGLTVGLEPLLDLR

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Crispr_ID: NZ_AP022615_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_2

367830-367968

Orphan

Consensus_repeat	Method
CCGAGCGTCACGCCAGCGTGACGCTTTCCGCCGAACGTCACGCCAGCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_2

>merge|NZ_AP022615|2|367830-367968|CRISPRCasFinder
CCGAGCGTCACGCCAGCGTGACGCTTTCCGCCGAACGTCACGCCAGCGTGGCACAGCGGGGGTGGGCGCTCGGCGGCGTGGCTGCTCCACCGAACGTCACGCCAGCGTGACGCTTTCCGCCGAACGTCACGCCAGCGTG

>NZ_AP022615|2|2|367830-367968|CRISPRCasFinder
CCGAGCGTCACGCCAGCGTGACGCTTTCCGCCGAACGTCACGCCAGCGTG	GCACAGCGGGGGTGGGCGCTCGGCGGCGTGGCTGCTCCA
CCGAACGTCACGCCAGCGTGACGCTTTCCGCCGAACGTCACGCCAGCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_071510275.1\|373314_373569_+\|DUF2631-domain-containing-protein	unknown	unknown	gnl\|CDD\|371308
NZ_AP022615.1\|WP_083072819.1\|370837_372058_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|308008
NZ_AP022615.1\|WP_083072806.1\|361907_362459_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022615.1\|WP_083072800.1\|357646_358423_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|180371
NZ_AP022615.1\|WP_083072890.1\|362586_364089_-\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NZ_AP022615.1\|WP_083072808.1\|364246_365104_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NZ_AP022615.1\|WP_083072823.1\|373561_374359_-\|DUF4097-family-beta-strand-repeat-protein	unknown	unknown	gnl\|CDD\|372574
NZ_AP022615.1\|WP_083072802.1\|358423_359782_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|365919
NZ_AP022615.1\|WP_163672338.1\|374933_375791_-\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|223856
NZ_AP022615.1\|WP_083072803.1\|359772_360507_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_AP022615.1\|WP_083072887.1\|356129_356576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072812.1\|368049_368331_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|225072
NZ_AP022615.1\|WP_083072817.1\|369627_370788_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_AP022615.1\|WP_083072816.1\|368718_369573_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225928
NZ_AP022615.1\|WP_083072814.1\|368334_368598_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_AP022615.1\|WP_142272499.1\|356721_357636_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_AP022615.1\|WP_083072821.1\|372054_373230_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_AP022615.1\|WP_083072804.1\|360493_361885_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_AP022615.1\|WP_083072810.1\|365934_367749_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_AP022615.1\|WP_083072825.1\|374401_374884_-\|histidine-kinase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_071510275.1\|373314_373569_+\|DUF2631-domain-containing-protein	gnl\|CDD\|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	5.44586e-29
NZ_AP022615.1\|WP_083072819.1\|370837_372058_-\|site-2-protease-family-protein	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	2.24879e-56
NZ_AP022615.1\|WP_083072806.1\|361907_362459_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	0.000970747
NZ_AP022615.1\|WP_083072800.1\|357646_358423_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|180371	PRK06057, PRK06057, short chain dehydrogenase; Provisional.	1.26958e-173
NZ_AP022615.1\|WP_083072890.1\|362586_364089_-\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NZ_AP022615.1\|WP_083072808.1\|364246_365104_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	2.70682e-158
NZ_AP022615.1\|WP_083072823.1\|373561_374359_-\|DUF4097-family-beta-strand-repeat-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	2.09509e-09
NZ_AP022615.1\|WP_083072802.1\|358423_359782_-\|aldehyde-dehydrogenase	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	0
NZ_AP022615.1\|WP_163672338.1\|374933_375791_-\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	2.50351e-26
NZ_AP022615.1\|WP_083072803.1\|359772_360507_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	2.96068e-101
NZ_AP022615.1\|WP_083072816.1\|368718_369573_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225928	COG3393, COG3393, Predicted acetyltransferase [General function prediction only].	1.84297e-77
NZ_AP022615.1\|WP_083072812.1\|368049_368331_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|225072	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.89904e-20
NZ_AP022615.1\|WP_083072817.1\|369627_370788_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_AP022615.1\|WP_083072814.1\|368334_368598_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	5.87545e-20
NZ_AP022615.1\|WP_142272499.1\|356721_357636_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.08362e-42
NZ_AP022615.1\|WP_083072821.1\|372054_373230_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_AP022615.1\|WP_083072804.1\|360493_361885_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.49607e-142
NZ_AP022615.1\|WP_083072810.1\|365934_367749_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	4.81245e-74

>NZ_AP022615.1|WP_083072810.1|365934_367749_-|penicillin-binding-protein-2
MATKTTVASAASGLLLVAVIALSGCTPRPDGPGPAAAKFFGALAIGDTATAAQLSDNPNEAREALNAAWSGLQATHLDAQILSAKYAEDTGTVNYRFTWHLPKNRTWSYDGQLKMARDEGRWEVRWATTGLHPRLGEHQTFALRADRPRRASVNELGGSDVLAPGYVYHYTLDATQAGPALIGTAHAVVDVLRPFNDTLADPQLLAEEATSATRPLDLVTLHPDDNDKVFPAIGRLPGIVITPQAEMLPTDPHFAPAVISAVKKAVMDQLDGQAGWRVVSVNQNGVDVAVLHEVEGSPAPSVSITLDRAVQNAAQHAVDTRGGKAMIVVIKPSTGEILAIAQNGGADADGLPATNGLFPPGSTFKMITAGAAIERDMATPNTMLGCPGHIDIGHRSIPNYGGFDLGVVSMSRAFASSCNTTFAELGSRMPPRGLTQAATRYGIGLDYTVDGITTVTGSVPPTVDLAERTEDGFGQGKVLASPFGMALVAATVAAGKTPVPQLIAGRPTTVEGDDTPISPKMVDALRPMMRLVVTNGTAKEIAGCCGEVYGKTGEAEFPGGSHSWFAGYRGDLAFAALIVGGGSSEYAVRMTKVMFESLPRDYLA
>NZ_AP022615.1|WP_083072808.1|364246_365104_-|type-I-methionyl-aminopeptidase
MPARTALSPGVISPTLPVPARIPRPEYVGKSTAREGSEPWVQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDELDRIAHEYMIDHGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTVIEDGDIVNIDVTAYIDGVHGDTNATFLAGDVAEEHRLLVERTREATMRAINAVKPGRALSVVGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPSVSTIIQPGMTFTIEPMINLGALDYEIWDDGWTVVTRDRKWTAQFEHTLLVTDTGVEILTCL
>NZ_AP022615.1|WP_083072890.1|362586_364089_-|cobyric-acid-synthase
MSGALLVAGTSSDAGKSVVVAGLCRLLARRGVKVAPFKAQNMSNNSVVTIEGGEIGRAQAIQARAAGLEPSVRFNPILLKPGSDRTSQLVIKGRVAESVTATNYIAHRDRLARIVGDELACLREEFDAVICEGAGSPAEINLRATDLANMGLARAADLPVILVGDIDRGGLLAHLFGTVAVLEPDDQALIAGFVVNKFRGDPALLEPGLRQLREMTGRPTYGVLPYADELWLDAEDSLQVVAHRVVGTPAPPRGTEWLKVAAVRPPRISNSTDVEALACEPGVLVRWVTDPAELADADLIVLPGSKATVADLRWLCDRGLADAIAEHAAAGKPVLGICGGFQMLCRRIDDPVESKTGEVAGLGLLDADIAFTEPKTLRRWRQPLTGYEIHHGRLSRCAEEAWFDADHQTQGIARGAVFGTHWHGLLDNDDFRRAWLTRVAGAAGRRGFVVADDVNVAARRDAQLDRIADLLAAHLDLDAVLGLLDGPPPRRPRVAIGLQP
>NZ_AP022615.1|WP_083072806.1|361907_362459_-|alpha/beta-hydrolase
MMTTLDGFPVPVAVAGPEKGAVVVIIGDERRAPIAYDAVCERLHTASFRTVVVGLDQRLTPKSVVGILDALGVSWAVVVGDRAGGELAWELAATRLGRFVGLVVIDRGHPRVADLNGAVRDEHCPPVEIGTTVLVSSAAARAVASASQRFVYAEYRVVDLGRRTVQESTAQLAAEIVLRTSTW
>NZ_AP022615.1|WP_083072804.1|360493_361885_-|glutamine-synthetase
MVGEQSAATGPDSPMLSLAALEQLAQRGAVDTVIVAFADMQGRLVGKRVAAGLFVEDVAAHGAECCAYLLAVDVEMNTVAGYAMSSWDTGYGDMVMRPDLSTLRLIPWLPHTALVIADLGRADGGEVTVAPRAVLRRQLDRLRGRGLVADVATELEFIVFDESYRQAWAGGYRGLTPASDYNIDYAILASSRMEPLLRDIQQGMIGAGLRFEAVKGECNRGQQEIGFRYDEALVTCDNHAIYKNGAKEIADRHGKSLTFMAKYDEREGNSCHIHLSLRDDGGAVFADADGPHGMSPTCRGFVAGLLATLREFTLFYAPNINSYKRFADGSFAPTAVAWGLDNRTCALRVVGHGRNLRVECRVPGGDVNPYLAVAALIAGGLHGIERGLEPPKPHAGNAYEATGVERLPATLAEAAALFGASALAREAFGDDVVAHYLNNARVELAAFNAAVTDWERTRGFERL
>NZ_AP022615.1|WP_083072803.1|359772_360507_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MNASESRPVVGLTAYLERVRTGIWDVAAGYLPADYFQGVTMAGGVAVLLPPQPVDAVGAVLDRLDALVITGGYDLDPAAYGQRPHPETDRPRTDRDAWEFALLRGALDRGLPVLGVCRGAQVLNVALGGTLHQHLPDVLGHGGHRAGNGVFARLPVRTVPGTRLAGLIGEGAEAPCYHHQAIDEVGEGLVVSAVDADGVVEAVELPGESFVLAVQWHPEKSLDDLRLFTAVVDAARTYAGRRCG
>NZ_AP022615.1|WP_083072802.1|358423_359782_-|aldehyde-dehydrogenase
MRLINPATEDALASVELLDAAAVDDAVARARAAQRRWAALSPAQRAAGLRAFAAAVDAHTDELAALEVANSGHPIASAEGEAAHVRDVLTFYAGSPERLSGRQIPVAGGLDVTFNEPLGVVGVITPWNFPMMIASWGIAPALAAGNAVLVKPAEWTPLTTIRLGELAAEAGLDADLLQVLPGQGAVVGERLVTHPDVRKVVFTGSTDVGKRVMAGAAAHVKRVTLELGGKSANIVFADCDLERAAATAPAGVFDNAGQDCCARSRILVQRSVYDRFMELLEPAVKGVVVGDPTSRDTGMGPLVSAAHRDKVASYVPDDAPVAFRGTAPSGPGFWFPPTVLTPRRTDRTVTDEIFGPVVTVLAFDDEDDAITLANDTAYGLSGSIWTDDLSRALRVSRAVESGNLSVNSHSSVRYNTPFGGFKQSGLGRELGPDAPLHFTETKNVFIAIGEEG
>NZ_AP022615.1|WP_083072800.1|357646_358423_-|3-oxoacyl-ACP-reductase
MVDLTRRLAGRVAVITGGSSGIGLAAGRRMHAEGAAVVVGDVDRDAGAAAAEELSGLFVPTDVSDEDAVNALFDAATQTYGWIDIAFNNAGISPPEDDLIESTELAAWQRVQDVNLKSVYLCCRAALRHMVPAGKGSIINTASFVAVLGSATSQISYTASKGGVLAMSRELGVQYARRGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
>NZ_AP022615.1|WP_142272499.1|356721_357636_+|PPE-family-protein
MNFAMLAPEINSGRMYGGPGSGPMTEAAMAWDRLAVRLSTAAADYAAVTAKLAAGRNGSAATEMIDAAAPYLRWLDATAAQAGHAAARAGAAASAHRSAVAATVPPPAIDANRARRRSLAAANCLGHNGPAIADTDADYERMWAQDVDAMRAYARAAADASTVTPFTLPPVTAGPVPRNAAAGWVVRSAPEMVSVGRRVISAIPEALRALSRSPLATFDATLSPVTPALSKLSSLSAPSGRAIGHLNALNKAAALRWLLPDQGGALGPRIIARMGRGTSIGTLSVPRAWSTATAPIPVYRGTVA
>NZ_AP022615.1|WP_083072887.1|356129_356576_+|hypothetical-protein
MRPGGAGRTRRWQSSIAIVAALSLFVALVAGSALRPQFAAAALPEPAAWSQTPDVGGHAHLHERQTVAQLPHAAWRGSAPAHKKPFHSMWMTKDRPPTWSRLSPQSVRSPLAPSFAALGFQPCGAQPRAPAAVRADRDILTQLCVARR
>NZ_AP022615.1|WP_083072812.1|368049_368331_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRTLPISKVKDKLNEFVDAVALTQDQITITKNGAPAAVLIGADEWESLQETLYWLAQPGIKESLAEADADIAAGRGYGEDEIRAEFGLPRRPS
>NZ_AP022615.1|WP_083072814.1|368334_368598_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MPHAVRFTATARRDLHKLPPRVRSAVVEFAFGDLSREPRRVGKPLRRELTGAFSARRGPYRILYRIDDERTTVWILRVDHRADVYRR
>NZ_AP022615.1|WP_083072816.1|368718_369573_-|GNAT-family-N-acetyltransferase
MSAPPIFRLVGERRVSVVRDAAAVWRVLDDDPIGSCMVAARVADHGIDPNSIGGELWTRRGPDESLCFAGANLIPLRGAPADLSAFAEEAMSGTRRCSSLVGRADLVMPMWERLESAWGPARDVRDDQPLMALTKHPNCDIDPGVRQVRPDELDAYLVAAVDMFIGEVGVDPRLGDGGRGYRRRVGNLIAAGRAWARFEHGQVVFKAEVGSQSPRVGQIQGVWVHPEWRGLGLGTGGTATVAAVIVGSGRIASLYVNNFNTVARAAYARVGFAEVGTFATVLLD
>NZ_AP022615.1|WP_083072817.1|369627_370788_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTIGLGMPEAPAPTLAPRRPTRQLMVRDVGVGSDHPISVQSMCTTKTHDVNTTLQQIAELTAAGCDLVRVACPRQEDADALAEIARHSQIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKEFDGRVGEVAKAAGEAGIPIRIGVNAGSLDKRFMAKYGKATPEALVESALWEASLFEEHGFSDIKISVKHNDPVVMVAAYEQLAAQCDYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGSQILESLNLRPRSLEIVSCPSCGRAQVDVYTLANAVTAGLDGLDVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVRGEVIKTVPEAQIVETLIEEAMRLASKMGTDPGAETSGSPIVTVS
>NZ_AP022615.1|WP_083072819.1|370837_372058_-|site-2-protease-family-protein
MMFAIGIVLFALAILISVALHECGHMWVARATGMKVRRYFVGFGPTLWSTRRGETEYGVKAVPLGGFCDIAGMTPVEDLAPEEADRAMYKQKTWKRVATLFAGPGMNFVICLALIYGIALVWGLPNLHAPSRAVVGETACVAPEVSPGKVGNCTGPGPAALAGIRAGDVVVKVGDTPVSSFDDMAAAVRKLRGTVPIVVERDGTPITTYVDVTPTQRFLANGANGQGQPQPATVGAIGVGAVRQGPAHYGVLSAIPATFAFTGDLTVEVGKSLVTIPTKVGALVHAIGGGQRDPQTPMSVVGASIIGGDTVDHGLWVAFWFFLAQLNLILGAINLVPLLPFDGGHIAIAVFEKVRNLIRSARGMVAAAPVNYLKLMPATYVVLVFVVGYMLLTVTADLVNPIRLFQ
>NZ_AP022615.1|WP_083072821.1|372054_373230_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MTNPTADGRLRVLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGANPDTLARQRAETGVTNVAIADERAAAKLGDVPFTGPDAVTRLVEETDADVVLNALVGALGLRPTLAALASGARLALANKESLIAGGPLVLRAARPGQIVPVDSEHSALAQCLRCGAPDEVARLVLTASGGPFRGWTAADLEAVTPEQAGAHPTWSMGPMNTLNSASLVNKGLELIETHLLFGVPYDRIDVVVHPQSIVHSMVTFVDGSTIAQASPPDMRLPISLALGWPHRVPGAAISCDFTTASSWEFEPLDRDVFPAVELARHAGQTGGCMTAVYNAANEEAAEAFLQGRIRFPAIVRTIADVLHAADQWAASPATVDDVLDAQRWARERAQRAVTQEVLPTR
>NZ_AP022615.1|WP_071510275.1|373314_373569_+|DUF2631-domain-containing-protein
MASTEVEHFNGVDVAEVPSAAWGWSRINIRTWHTTGVVIFIFLLAMLRGNHVGHVENWFLIGFAALTLFVLVRDWWGRRRGWIR
>NZ_AP022615.1|WP_083072823.1|373561_374359_-|DUF4097-family-beta-strand-repeat-protein
MPTFATPEPIAVRIEAGDGSIRLAATDRADTVVEVRPRDGSRDSDVRAAERTRVDFRDGKLVVSCTRRGFRGGAIDVDIALPSLSRLHASLASADLRAEGELADFRLGSAGGKVEVDSVKGKIKAANASGSFTVHAVQGSALVGTASGDVTVGDLDGELKFKAASGSLTVDRLRGHVRARTASGSVDVAAAVRGGVSAHTSSGDVAVGIAEGTAARLDIVTASGDVSNDLRPSDGPQQGDETFVLNVRSGSGDVNIRRANPATAT
>NZ_AP022615.1|WP_083072825.1|374401_374884_-|histidine-kinase
MDLQPYVDAVRHELNVAAATAGAEARDLADRLSAPLESAMRLALLEALAAAAEEITGELAPRSVEVRLRGRDPEFIVSAPLDEAPDEDAFVAQYDDAGGGTWRVTLRLPEALRSTVEAAARRDGASLNSWLVRAAAAASGHAAGPESGRASGHRVTGWVR
>NZ_AP022615.1|WP_163672338.1|374933_375791_-|cytochrome-c-biogenesis-protein-CcdA
MDQGLAGLAFAAGLVAVLNPCGFAMLPAYLLLVVRGQQPERRGWAPIGRALAATVGMALGFLTVFGSFGALTISAAATVQRYLPYGTVVIGSVLVALGVWLLAGRELTALTPRPLGPRWAPGARGLIGMYGYGVSYAIASLSCTIGPFLAVTAAGLRAGSVLTGAVVYLAYVAGLTLVVGVLAIAAAMASTALADRLRRVLPFVNRIGGALLVLVGLYVAYYGVYELRLFTTNANPQDAVIASAGRLQGALAGWAHQHGVVPWLVALSALVIGAFAGTWRRRRRR

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Crispr_ID: NZ_AP022615_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_3

1015467-1015557

Orphan

Consensus_repeat	Method
GCATCACCAACAGCCTCAACGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_3

>merge|NZ_AP022615|3|1015467-1015557|CRISPRCasFinder
GCATCACCAACAGCCTCAACGCCAGCGCCGCCGCCTTCCAAGGCGTTCATTCGGCTGCCCTGGCCAGCATCACCAACAGCCTCACCGCCAG

>NZ_AP022615|3|3|1015467-1015557|CRISPRCasFinder
GCATCACCAACAGCCTCAACGCCAG	CGCCGCCGCCTTCCAAGGCGTTCATTCGGCTGCCCTGGCCA
GCATCACCAACAGCCTCACCGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_142272541.1\|1011476_1012271_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_AP022615.1\|WP_083073246.1\|1007436_1007922_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
NZ_AP022615.1\|WP_083073245.1\|1005924_1007364_-\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
NZ_AP022615.1\|WP_083073244.1\|1004102_1005857_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_AP022615.1\|WP_083073252.1\|1017911_1018985_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_142272542.1\|1020363_1021767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_083073250.1\|1012275_1013868_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_AP022615.1\|WP_083073254.1\|1023347_1024418_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083073248.1\|1009005_1010175_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
NZ_AP022615.1\|WP_083073249.1\|1010171_1011356_-\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349921
NZ_AP022615.1\|WP_083073247.1\|1007980_1008868_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_AP022615.1\|WP_083073242.1\|1001936_1003073_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_AP022615.1\|WP_083073251.1\|1016604_1017813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672363.1\|1029380_1030448_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083073243.1\|1003233_1004073_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
NZ_AP022615.1\|WP_083073256.1\|1027902_1029210_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083073275.1\|1025154_1026006_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NZ_AP022615.1\|WP_083073253.1\|1021836_1023183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083073255.1\|1026308_1027706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_158084948.1\|1031713_1033033_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_142272541.1\|1011476_1012271_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	2.86388e-128
NZ_AP022615.1\|WP_083073246.1\|1007436_1007922_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	5.09755e-32
NZ_AP022615.1\|WP_083073245.1\|1005924_1007364_-\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
NZ_AP022615.1\|WP_083073244.1\|1004102_1005857_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NZ_AP022615.1\|WP_083073252.1\|1017911_1018985_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	6.50756e-39
NZ_AP022615.1\|WP_142272542.1\|1020363_1021767_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000195494
NZ_AP022615.1\|WP_083073250.1\|1012275_1013868_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_AP022615.1\|WP_083073254.1\|1023347_1024418_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.8543e-42
NZ_AP022615.1\|WP_083073248.1\|1009005_1010175_-\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_AP022615.1\|WP_083073249.1\|1010171_1011356_-\|M20-family-metallopeptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	9.6665e-157
NZ_AP022615.1\|WP_083073247.1\|1007980_1008868_-\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	0.000121718
NZ_AP022615.1\|WP_083073242.1\|1001936_1003073_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.36539e-44
NZ_AP022615.1\|WP_083073275.1\|1025154_1026006_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	1.53562e-31
NZ_AP022615.1\|WP_158084948.1\|1031713_1033033_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000126408
NZ_AP022615.1\|WP_083073243.1\|1003233_1004073_-\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	1.00077e-124
NZ_AP022615.1\|WP_163672363.1\|1029380_1030448_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	4.39672e-38
NZ_AP022615.1\|WP_083073255.1\|1026308_1027706_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00692243

>NZ_AP022615.1|WP_083073250.1|1012275_1013868_+|phospho-sugar-mutase
MTPEEWIAHDPDPKTAAELAACGPDELAARFARPLRFGTAGLRGPVRGGPDAMNVAVVSRATWAVAQVLKDRGLAGAPVIVGRDARHGSAVFATVTAEVLAAEGFPVLQAPGPVPTPVVAFGVREARAAAGIQITASHNPPTDNGYKVYFDGGIQIVSPTDRRIEAAMADAPPPDQIARAPVAPADTGLVERYIRRAAAVRRSDGSVRVALTPLHGVGGAVAVETLRRAGLHEVHTVGAQFAPDPDFPTVAFPNPEEPGAADALLAVAADVEADVAIALDPDADRCAVGIPLGRSGATGWRMLSGDETGWLLGDYILSHGNTAGAVVASSVVSSRMLSKIAADHGATHVETLTGFKWLARADENVPGGRLVYAYEEAIGHCVDPDAVRDKDGISAAVLVCDLVASLKRRGRSVPGALDDLARRHGVHAVAAVSRRVADADEAAELMRRLRAAPPSRLAGFAATTTDIADALIFTSGDDEASVRVVVRPSGTEPKLKCYLEVHCAVTEDLRLARERAGALRDELVASVRRW
>NZ_AP022615.1|WP_142272541.1|1011476_1012271_+|purine-nucleoside-phosphorylase
MSDPDELARRAARAIAERTGIPEHDVAIVLGSGWRPAVAALGSPTVALAQAELPGFAPPTAVGHTGELLSMRIGEHRVLVLVGRVHAYEGHDLCHVVHPVRAACAAGARVVVLTNAAGGLRPDMTVGQPVLIGDHLNLTARSPLVGPQFVDLTDAYAPRLRELARRADPELTEGVYAGLPGPHYETPAEIRALRLLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGLSGEPLSHAEVLAAGAASAGRMGALLAAVIARL
>NZ_AP022615.1|WP_083073249.1|1010171_1011356_-|M20-family-metallopeptidase
MPTATALDGVEDVVRRRGGDLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFEITARAGGLDTAFRADFGSGPLVVGICAEYDALPEIGHACGHNIIAASAVGTALALAEVADDLGLTVALVGTPAEEAGGGKALLLRAGTFDDVAVAVMVHPGPTDIAGARSLALSEVIVDYRGKESHAAVAPHLGLNAADAVTVAQVAIGVLRQQLAPGQLVHGIVTNGGQAVNVIPGRATLQYAMRAFDSDSLRELEGRMFACFAAGALAAGCEYEIDNPAPPYAELKPDPWLAGVCREEMRRLGREPVAPDVEARLPLGSTDMGNVTQVLPGIHPVIGVDAGGATVHQRAFAAAAAGPSADRAVVDGAIMLARTVVQLAQAPDERDRVLAAAERRAAT
>NZ_AP022615.1|WP_083073248.1|1009005_1010175_-|amidohydrolase
MSLVDTAESWLAAHHEDLIAWRRHIHRYPELGRQEYATTQFVAERLADAGLNPKVLPGGTGLVCDMGPEHEPRIALRADMDALPMAELTGAPYASTMPNVAHACGHDAHTAILLGTALALASVPELPVGVRLIFQAAEELMPGGAIDAIAAGALSGVSRIFALHCDPRLEVGKVAVRHGPITSAADSIEIALYSPGGHTSRPHLTADLVYGLGTLITGLPGVLSRRIDPRNGTVLVWGAVNAGVAANAIPQTGVLAGTVRTASRQTWVGLEEIIREAVSALLSPLGIEHTLRYHRGVPPVVNEEVSTRILTHAIEAVGPDALADTRQSGGGEDFSWYLEEVPGAMARLGVWSGEGPQLDLHQPTFDLDERALAIGLRVLVNIVEQAGLL
>NZ_AP022615.1|WP_083073247.1|1007980_1008868_-|hypothetical-protein
MNAELERLLDAQGGVVTSAQALTHLTRRGLEFGLKCGVLQKVWYGVYGRGEITDALRLRGLDLATGTTIAVCLSTAAAAYGFDTEEDRDLHVLNPGGQQLRPTRGLVVHRRAGAPLAIVAGRPATTPAWTAIEVARGLRRPRALATLDAALRGGTCDRDGLRRVLRRHSGRRGVVAARELLELASPLAESPMESEARLVMLDGGLPPPVLQYEIVDLTGRTWRLDFAWPACRVAAEYDGVDWHSGPDAFLRDRRRSAALQDLGWLVVPIVFGDVRYRPRELVARIERRLERASAA
>NZ_AP022615.1|WP_083073246.1|1007436_1007922_+|gamma-glutamylcyclotransferase
MPLYAAYGSNMHPEQMLKRAPHSPMAGTGWLHGWRLTFGGEDIGWEGALATVVEDPGSKVFVVLYDMTPADEMNLDRWEGSEFGVHKKIRCRVERLSSDTTTDPVLAWLYVLDAWEGGLPSARYLGVMADAAEIAGAPEDYVHNLRTRPARNIGPGTSAQD
>NZ_AP022615.1|WP_083073245.1|1005924_1007364_-|NAD(P)H-quinone-dehydrogenase
MVTRIVILGGGPAGYEAALVAATLRPEHPDAAQVTIIDSDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPRLGIDIDIDDAKISLPQIHARVKALASAQSADIKAHLLSVGVHVVAGRGELIDSAPGLARHRVRATHSDPGPDGPVTSEYEADVVLIATGASPRILPSARPDGERILTWRQLYDLEALPDHLVVVGSGVTGAEFVSAYTELGVQVTVAASRDRVLPYEDADAAAVLEESFAERGVRLFKNARAESVTRTEAGVLVTMTDGRTVEGSHALMTIGSVPNTGGLGLERVGIELGPGNYLPVDRVSRTSVPGIYAAGDCTGLLLLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSMIDDGSVPARTIMLPLRTNARAKMSGLRQGFVKVFCRKSTGVVIGGVVVAPIASELILPIAVAVTNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLD
>NZ_AP022615.1|WP_083073244.1|1004102_1005857_-|glycerol-3-phosphate-dehydrogenase/oxidase
MSDPIHAPGEQRSPASELGPRQRALAWERLGAEQFDVVVIGGGVVGSGCALDAATRGLKVALVEARDFASGTSSRSSKMFHGGLRYLEQLEFGLVREALYERELSLTKLAPHLVKPLPFLFPLTRRGWERPYIAAGIFLYDRLGGAKSVPAQKHLTRAGALRLCPGLKRTSLIGGIRYYDTVVDDARHTMTVARTAAHYGAVVRSSSQVVALLREGDRVTGVRVRDSEDGAISEVRGHVVVNATGVWTDEIQALSKQRGRFQVRASKGVHVVVPRDRIVSDVAIILRTEKSVMFVIPWGSHWIIGTTDTDWDLDLAHPAATKADIDYILGTVNTVLATPLTHADIDGVYAGLRPLLAGESEETSKLSREHAVAVPAPGLIAIAGGKYTTYRVMAADAIDAAAQFVPARVAPSITEKVSLLGADGYFALVNQVEHVATLQGLHPYRVRHLLDRYGSLIDDVLGLAAETPGLLSPIKEAPGYLRVEALYAVTAEGALHLEDVLARRMRISIEYPHRGVDCAREVAEVVAPVLGWSAEDVDREVANYTARVEAEILSQAQPDDVSADELRASAPEARAEILEPVPLS
>NZ_AP022615.1|WP_083073243.1|1003233_1004073_-|pseudouridine-synthase
MRDGLGPARVRLRGGPVLAELDARFGPRARAKVLAGEVVDADGAVVDEATALPAGSVVYLYRELPDEVPVPFDIPVLYRDADIVVADKPHFLATMPRGRHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTARREARGAYQTLFARGLVAKTYLARAAVDPALVLPRVVRSRIVKRRGRLQAVCEPGAPNAETLVELVAPHGLYRLTPRTGRTHQLRVHMASLGVPIEGDPLYPNVIDVPADDFGAPLRLLARRIAFTDPLTGVHREFVSRRPGP
>NZ_AP022615.1|WP_083073242.1|1001936_1003073_-|PPE-family-protein
MDFISLPPEITSALIHSGPGAESLIEASGAWQHLGVELEQTAPIYSSVVSSLTQAWRGPSAATMAQAVEPFLTWMRTTAQQCQQLASSARTAAAAFGQVQSSVVQPAQVAANRTRLARLVATDRLGGNLAAIAQTEDQYQAMWADNSAAMYRYQAASAQALDVPQFSSPAAIASPTAAATQASAVPATATSAQSTIGDLLTNLLSTPGGFDPNSGWFGLANTYANQFISSGFPINLLSYAAQNTSAQALQSVGGEVGQGLSEGESAFGGIAGDLASAIRAIPAAAPTGALGAGVTVGKLTVPPAVVGIMPSAQTPVQLASAASPLPAGDSGFDMLPPLMPPPISAGSGWRKRKQPKYEDLQVGAQVKGKVMPRSPSGG
>NZ_AP022615.1|WP_083073251.1|1016604_1017813_+|hypothetical-protein
MIALTPTVSNDLAADIQHSMTDLQQRAVEFTDYVANPIQDWITTFQAASTNLSSLYTQFQQFPFAASQQIAANFLQYAVQYVQPYQAFGTGAVGYLLGTAATPGSADFIPEILIGLTDLAAGNFAAGIPALTSTIWGGLALDVFKPLEGIPTILNPITQNLANATDYLTTTGIANIAGYFADHFMGTVFTPLGVGVQNVYNSLVAGDPLGAVINAIDIPALVTNSVFNGTLNAKTGLYSTGLIADGSAGFLKYLITVTPQGLANKMVAPNAQNIMSGGSLEYALGYLGNVLATGFPTPQIAFDNLLNVIRTYAGIPSAAAAAAANGSEFAALAPAASNAMAGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_083073252.1|1017911_1018985_+|AAA-family-ATPase
MSVGWQQWDDEDTTDEVLAATGIWLIPRTRPVLEKSRCRNVTTNTGREAHADAALARECQEVLEWAQARIDELIGVAEAKDHFTTWRTALQNDHHHRVEHGGAVTSCRENHMVLLGAPGTAKKTFARVIAEVLFGLGTITRPEVTEITAHDIVAGDPSRSAARMKTVCDDARGGVLLLDEAHQLAPHTDNHPHGGDVIAALQTHVADYRGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPDDIVALGRRLAGKENLIVEDTAWELLRTEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLVRTNPGVLHVNTTDMQRALTATHPAVTT
>NZ_AP022615.1|WP_142272542.1|1020363_1021767_+|hypothetical-protein
MKRKQHSMRRDRRNAKASRGRVVGLGTAAGAFLTATMTPMVAPPAQAGVLDMIINPIIQPIIGATSTAAAAGTTAINGIGAGALAGLQTGALQGLTNSLNASPAAFQGVHSAALASITNSLTASAAAFNTGGLNAALESMHASAAAALNVSSVSAALEGLHASAAAAFSGWGLSAAAANPAGNVQLNNLVYGGFSNVYTTIYTAGQTWITSPTGQQIDGVINAPFLYLFGRDLIGNGVGGAPITNTSPFGTWLPVGNLHDGGFLFGNGGAGAAGTASNLNGGAGGAAGLIGNGGVGGAGFSPTNGLGGAGGAGGAGGFLMGNGGAGGAGGMAGVPPGGGRSGAGGPGGNAGWLFGNGGAGGAGGATNPAGGYGGTGGAGGNAAQLVGNGGSGGSAPNNIYGNGFYLSGRSGGNAGLGGLLAGNGGNGGNGGNATPGYSYSGGRGGAAGFAGLLGQSGMAGANGAPGL
>NZ_AP022615.1|WP_083073253.1|1021836_1023183_+|hypothetical-protein
MQQLTALRPLVTAGAAAVGASLIALTPAVSNDLAADLQHSAAAIQQRAVELASTDYAVNPIQTWIGVFTNSAANLQTLYSDWVAQGPALLSQQLAANWMQYASLYVGSYQGAANGALNFFTGNAPVTVTTVGHFWPLVTTAITEIGSGDINDAVANLTAALAFQPIELILQPLENILNIPIYLTRNLASATYDALSTPSSDPSSISSLIVGLGAFVLFPFAGDLNVSLGGSLQAAYDAFAAGNVLDGALNLLNTPGAVTNALLNGIAGGNGSGITGILTPKVSGFAGGTGLVSLLVNLFPRFLASDIVAPGATNITDGGSLATTFQTLLTQLATGWPTPQQWVDNTVNLVQTYFGVGGLTGAASAANGSGFAALAPAASSAMAGLSAGLPGLSAGVLKAFDPAAVTNIAASLGPSLAAGSLGANLAGSLATTLSVDLSRVALHILSAL
>NZ_AP022615.1|WP_083073254.1|1023347_1024418_+|AAA-family-ATPase
MSVHWREWDDEDTAGEVLGATGIWLIPRTPALVVEPRCRNVTTNTGREARAGVGLARERREVLEWAQARVDELIGLAEAKERFAMWRTALQNNHHRLEHGGAVTSCRENHMVFLGAPGTAKKTFARVITEVLFGIGTLTRPEVTEITAHDIVADDPSRSAARMKTVCDDARGGVLFLDEAHRLAPNTESPSFGGDVIAALQTYVADYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVTFASPTPNDIVALGHRLASKENLTIEDTAWELLRTEAARLQSIPHGHGTLLDVAGNAHYTHDVIHTCQRTRLRRLHKLAPHRRDLEHLLHTNPGVLHVNTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_083073275.1|1025154_1026006_-|tyrosine-type-recombinase/integrase
MQADRKALYTIDSYLRGARYYLAWCAAESEVHPFTRAALQRWIAHLLDSGAEPATARIRQQAVRRFAAWLANEQEIDHDPFLGLKPPKLDLKVVERLTDEELRLMLKACAGKELHDRRDEACLRLLVETGMRAGELLALSVYDVDLVTGVVTIRKGKGGRGRYVPFQTQTGAVIDRYLRVRQRHPLRDTPALWLTETGGRAQLGYTGLRIALLGRATAVGIEGFYIHRLRHTFASRYLSHGGTEGSLMQVAGWRTRQMVDRYSSDTAAERALTETRRLKLGDL
>NZ_AP022615.1|WP_083073255.1|1026308_1027706_+|hypothetical-protein
MKRKQHNTRRDHRSRNAKAARRGRVVGLGTAAGAFLTATMAPVVAAPPAEAGVLDMIINPIIQPIMGAAGTAATAMNGIGAGALAGLHTAALESLTNSLNASAAAFQGMHSAALASITNTLNASAAAFNTGGLNTALEGLHASAAAAFSGGGLSAAAANSAGNVQLNNLVYGGFSNVYNTIYTAGQTWITSPTGQQIDGVINAPFLYLFGRDLIGNGVDGFTGPNTSLIGSLGLNGTLHDGGFLFGNGGAGLNGTAAHLAGTAGGSAGLIGNGGAGGSGFAGGGTAALGANGGSGGFLMGNGGAGGFGGSGGVSSSITVYNGAAAGNGGSGGWLFGNGGAGGNGGLGGTSSTNVGGAGGNGGVGGNSAILVGNGGDAGVGGNGGAGAAAGKAGGRAGFAYLGGNGGILAGDGGDGGIGGNGGAGGTGAAGGTAGRFVSSGTPGGITGLLGQEGAPGANGQAGAHG
>NZ_AP022615.1|WP_083073256.1|1027902_1029210_+|hypothetical-protein
MQQLAASRPLVIAGAAAIGASLIALTPTVANDLAADAQRSTVIIQHHAIELADTVANPIQTWVDTFSTLGINLQALWAQFQAVPFALSQQLAANFLQYGVDYVSAFQNAAIAADAQFLNTGSSAYFVPGLELAGTELMSGQIAKGVTQLYNTVWNLPITNIGYKLFPLLNLPGYILQNATNFSNSMAETGVPAFVLQTVFGIPGNFSTALGNGLQAVYDSFTAGDQLGAVINAIDIPGEIANLVLNGTYNGFDGYSEGIFSAAPGGTNGLVQLLTSGGPQIFAADMVAPNAQNIVQGGSIATAFGNFVNTLNFWNPATTSWPTVQSLFDGILGVFRYVLEDIGGAPAAAANGSGFAALAPAASSAMAGLSGGLPGLSAGVLKAFDPAAVTNIAGSLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_163672363.1|1029380_1030448_+|AAA-family-ATPase
MSVGWREWDDEDTTDEVLGATGIWLIPRTRPVLAEPRCRNVTISTGRDARADAVLAAECQEVLEWAQARIDELIGLAEAKEHFTTWRTALQNNHRVEHGGAVTSCRENHMVFLGAPGTAKKTFARIIAEVLFGLGTLTRPQVTEITAHDIVVDDPSHSAARMKTVCDDARGGVLFLDDAHQLVPHTESLSWGGDVIAALQACVADYRGELVVILAGHPTPMREFLTAHAGLAGRFPHTVAFTSPTPDDIVALGHRLAGKENLHVEDTAWELLHTEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPAVTT
>NZ_AP022615.1|WP_158084948.1|1031713_1033033_+|PE-family-protein
MKRKQHNMRRDRRNAKAASRGRVVGLGTAAGAFLTATMTPIAAAPPAQAGVLDLIINPIIQPVMGAVGTAAAAGTTAINGIGAGALAGLHTGALQGITNSLNASAAAFQGVHSAALASITNSLNASAAAFNPGGLTTALESLHASAAAALSGGGLSAAAANSAGNVQLNNLVYGGFSNVYNMIYTAGQSWIASPTGQQVDGVLNAPFLYLFGRDLIGNGVNNFTGPNTTLIGQTGLFGNLQSGGFLFGNGGTGAAGTAAHPLGFTGGAAGLIGNGGNGGVGFPGKAGVPTSNGGAGGAGGLLMGNGGAGGAGGALTAGYFDAATGGAGGSGGLLFGNGGAGGAGGGVGAGAPYASAGTGGAGGNAAWLVGHGGAGGAGAAGPYGGSGGSGGFSGLLAGNGGAGGNGGFGSYAGYGGRGGVGGLAGILGAKGAAGIKPTS

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Crispr_ID: NZ_AP022615_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_4

1026592-1026682

Orphan

Consensus_repeat	Method
TCACCAACAGCCTCAACGCCAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_4

>merge|NZ_AP022615|4|1026592-1026682|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGCAGCAGCCTTCCAAGGTATGCATTCGGCCGCCCTAGCCAGCATCACCAACACCCTCAACGCCAGCGC

>NZ_AP022615|4|4|1026592-1026682|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGC	AGCAGCCTTCCAAGGTATGCATTCGGCCGCCCTAGCCAGCA
TCACCAACACCCTCAACGCCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083073254.1\|1023347_1024418_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_142272541.1\|1011476_1012271_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
NZ_AP022615.1\|WP_083073252.1\|1017911_1018985_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_142272542.1\|1020363_1021767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_083073250.1\|1012275_1013868_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
NZ_AP022615.1\|WP_163672363.1\|1029380_1030448_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083073249.1\|1010171_1011356_-\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349921
NZ_AP022615.1\|WP_142272906.1\|1033153_1034344_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083073275.1\|1025154_1026006_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NZ_AP022615.1\|WP_083073251.1\|1016604_1017813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084948.1\|1031713_1033033_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_083076380.1\|1040725_1041349_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_AP022615.1\|WP_083073256.1\|1027902_1029210_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672368.1\|1036828_1038115_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672370.1\|1039611_1040688_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083077634.1\|1038168_1039446_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_142272910.1\|1035606_1035888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083073253.1\|1021836_1023183_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084860.1\|1015183_1016458_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372323
NZ_AP022615.1\|WP_163672366.1\|1034509_1035586_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083073254.1\|1023347_1024418_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.8543e-42
NZ_AP022615.1\|WP_142272541.1\|1011476_1012271_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	2.86388e-128
NZ_AP022615.1\|WP_083073252.1\|1017911_1018985_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	6.50756e-39
NZ_AP022615.1\|WP_142272542.1\|1020363_1021767_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000195494
NZ_AP022615.1\|WP_083073250.1\|1012275_1013868_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_AP022615.1\|WP_163672363.1\|1029380_1030448_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	4.39672e-38
NZ_AP022615.1\|WP_083073249.1\|1010171_1011356_-\|M20-family-metallopeptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	9.6665e-157
NZ_AP022615.1\|WP_083073275.1\|1025154_1026006_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	1.53562e-31
NZ_AP022615.1\|WP_158084948.1\|1031713_1033033_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000126408
NZ_AP022615.1\|WP_083076380.1\|1040725_1041349_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	6.10165e-104
NZ_AP022615.1\|WP_163672370.1\|1039611_1040688_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.03132e-38
NZ_AP022615.1\|WP_158084860.1\|1015183_1016458_+\|hypothetical-protein	gnl\|CDD\|372323	pfam12810, Gly_rich, Glycine rich protein. This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant.	0.00884562
NZ_AP022615.1\|WP_163672366.1\|1034509_1035586_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.888e-40

>NZ_AP022615.1|WP_083073275.1|1025154_1026006_-|tyrosine-type-recombinase/integrase
MQADRKALYTIDSYLRGARYYLAWCAAESEVHPFTRAALQRWIAHLLDSGAEPATARIRQQAVRRFAAWLANEQEIDHDPFLGLKPPKLDLKVVERLTDEELRLMLKACAGKELHDRRDEACLRLLVETGMRAGELLALSVYDVDLVTGVVTIRKGKGGRGRYVPFQTQTGAVIDRYLRVRQRHPLRDTPALWLTETGGRAQLGYTGLRIALLGRATAVGIEGFYIHRLRHTFASRYLSHGGTEGSLMQVAGWRTRQMVDRYSSDTAAERALTETRRLKLGDL
>NZ_AP022615.1|WP_083073254.1|1023347_1024418_+|AAA-family-ATPase
MSVHWREWDDEDTAGEVLGATGIWLIPRTPALVVEPRCRNVTTNTGREARAGVGLARERREVLEWAQARVDELIGLAEAKERFAMWRTALQNNHHRLEHGGAVTSCRENHMVFLGAPGTAKKTFARVITEVLFGIGTLTRPEVTEITAHDIVADDPSRSAARMKTVCDDARGGVLFLDEAHRLAPNTESPSFGGDVIAALQTYVADYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVTFASPTPNDIVALGHRLASKENLTIEDTAWELLRTEAARLQSIPHGHGTLLDVAGNAHYTHDVIHTCQRTRLRRLHKLAPHRRDLEHLLHTNPGVLHVNTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_083073253.1|1021836_1023183_+|hypothetical-protein
MQQLTALRPLVTAGAAAVGASLIALTPAVSNDLAADLQHSAAAIQQRAVELASTDYAVNPIQTWIGVFTNSAANLQTLYSDWVAQGPALLSQQLAANWMQYASLYVGSYQGAANGALNFFTGNAPVTVTTVGHFWPLVTTAITEIGSGDINDAVANLTAALAFQPIELILQPLENILNIPIYLTRNLASATYDALSTPSSDPSSISSLIVGLGAFVLFPFAGDLNVSLGGSLQAAYDAFAAGNVLDGALNLLNTPGAVTNALLNGIAGGNGSGITGILTPKVSGFAGGTGLVSLLVNLFPRFLASDIVAPGATNITDGGSLATTFQTLLTQLATGWPTPQQWVDNTVNLVQTYFGVGGLTGAASAANGSGFAALAPAASSAMAGLSAGLPGLSAGVLKAFDPAAVTNIAASLGPSLAAGSLGANLAGSLATTLSVDLSRVALHILSAL
>NZ_AP022615.1|WP_142272542.1|1020363_1021767_+|hypothetical-protein
MKRKQHSMRRDRRNAKASRGRVVGLGTAAGAFLTATMTPMVAPPAQAGVLDMIINPIIQPIIGATSTAAAAGTTAINGIGAGALAGLQTGALQGLTNSLNASPAAFQGVHSAALASITNSLTASAAAFNTGGLNAALESMHASAAAALNVSSVSAALEGLHASAAAAFSGWGLSAAAANPAGNVQLNNLVYGGFSNVYTTIYTAGQTWITSPTGQQIDGVINAPFLYLFGRDLIGNGVGGAPITNTSPFGTWLPVGNLHDGGFLFGNGGAGAAGTASNLNGGAGGAAGLIGNGGVGGAGFSPTNGLGGAGGAGGAGGFLMGNGGAGGAGGMAGVPPGGGRSGAGGPGGNAGWLFGNGGAGGAGGATNPAGGYGGTGGAGGNAAQLVGNGGSGGSAPNNIYGNGFYLSGRSGGNAGLGGLLAGNGGNGGNGGNATPGYSYSGGRGGAAGFAGLLGQSGMAGANGAPGL
>NZ_AP022615.1|WP_083073252.1|1017911_1018985_+|AAA-family-ATPase
MSVGWQQWDDEDTTDEVLAATGIWLIPRTRPVLEKSRCRNVTTNTGREAHADAALARECQEVLEWAQARIDELIGVAEAKDHFTTWRTALQNDHHHRVEHGGAVTSCRENHMVLLGAPGTAKKTFARVIAEVLFGLGTITRPEVTEITAHDIVAGDPSRSAARMKTVCDDARGGVLLLDEAHQLAPHTDNHPHGGDVIAALQTHVADYRGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPDDIVALGRRLAGKENLIVEDTAWELLRTEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLVRTNPGVLHVNTTDMQRALTATHPAVTT
>NZ_AP022615.1|WP_083073251.1|1016604_1017813_+|hypothetical-protein
MIALTPTVSNDLAADIQHSMTDLQQRAVEFTDYVANPIQDWITTFQAASTNLSSLYTQFQQFPFAASQQIAANFLQYAVQYVQPYQAFGTGAVGYLLGTAATPGSADFIPEILIGLTDLAAGNFAAGIPALTSTIWGGLALDVFKPLEGIPTILNPITQNLANATDYLTTTGIANIAGYFADHFMGTVFTPLGVGVQNVYNSLVAGDPLGAVINAIDIPALVTNSVFNGTLNAKTGLYSTGLIADGSAGFLKYLITVTPQGLANKMVAPNAQNIMSGGSLEYALGYLGNVLATGFPTPQIAFDNLLNVIRTYAGIPSAAAAAAANGSEFAALAPAASNAMAGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_158084860.1|1015183_1016458_+|hypothetical-protein
MKRKQHSTRRDRRNAKASRGRVVGLSTAAGAFLTAAMTPVAAAPSAQAGVLDMIINPIIQPVMGAVSTAANAGTTAINGIGAGALAGLHTAALEGITNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLNTALEGLHASAAAAFSGGGLSAAAANAAGNVQLNNLVYGGFSNVYNMIYTAGQTWIASPTGQQIDGILNAPFLYLFGRDLIGNGVNNFTGPNTSLLGQTGLFGTLHDGGFLFGNGGAGAAGTAANPLGQAGGAAGLFGNGGNGGTGANITSASGIHLNDGGAGGPGGILMGNGGTGGIGGDTIGLFGGAGGRGGAGGFLFGNGGAGGNGSTGVASSPGNGGVGGNGAWLVGNGGSGGSASGSGNGGAAGLGGMLAGNGGNGGDAATATRIRAGGLAGLLGQNGSPGSVTP
>NZ_AP022615.1|WP_083073250.1|1012275_1013868_+|phospho-sugar-mutase
MTPEEWIAHDPDPKTAAELAACGPDELAARFARPLRFGTAGLRGPVRGGPDAMNVAVVSRATWAVAQVLKDRGLAGAPVIVGRDARHGSAVFATVTAEVLAAEGFPVLQAPGPVPTPVVAFGVREARAAAGIQITASHNPPTDNGYKVYFDGGIQIVSPTDRRIEAAMADAPPPDQIARAPVAPADTGLVERYIRRAAAVRRSDGSVRVALTPLHGVGGAVAVETLRRAGLHEVHTVGAQFAPDPDFPTVAFPNPEEPGAADALLAVAADVEADVAIALDPDADRCAVGIPLGRSGATGWRMLSGDETGWLLGDYILSHGNTAGAVVASSVVSSRMLSKIAADHGATHVETLTGFKWLARADENVPGGRLVYAYEEAIGHCVDPDAVRDKDGISAAVLVCDLVASLKRRGRSVPGALDDLARRHGVHAVAAVSRRVADADEAAELMRRLRAAPPSRLAGFAATTTDIADALIFTSGDDEASVRVVVRPSGTEPKLKCYLEVHCAVTEDLRLARERAGALRDELVASVRRW
>NZ_AP022615.1|WP_142272541.1|1011476_1012271_+|purine-nucleoside-phosphorylase
MSDPDELARRAARAIAERTGIPEHDVAIVLGSGWRPAVAALGSPTVALAQAELPGFAPPTAVGHTGELLSMRIGEHRVLVLVGRVHAYEGHDLCHVVHPVRAACAAGARVVVLTNAAGGLRPDMTVGQPVLIGDHLNLTARSPLVGPQFVDLTDAYAPRLRELARRADPELTEGVYAGLPGPHYETPAEIRALRLLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGLSGEPLSHAEVLAAGAASAGRMGALLAAVIARL
>NZ_AP022615.1|WP_083073249.1|1010171_1011356_-|M20-family-metallopeptidase
MPTATALDGVEDVVRRRGGDLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFEITARAGGLDTAFRADFGSGPLVVGICAEYDALPEIGHACGHNIIAASAVGTALALAEVADDLGLTVALVGTPAEEAGGGKALLLRAGTFDDVAVAVMVHPGPTDIAGARSLALSEVIVDYRGKESHAAVAPHLGLNAADAVTVAQVAIGVLRQQLAPGQLVHGIVTNGGQAVNVIPGRATLQYAMRAFDSDSLRELEGRMFACFAAGALAAGCEYEIDNPAPPYAELKPDPWLAGVCREEMRRLGREPVAPDVEARLPLGSTDMGNVTQVLPGIHPVIGVDAGGATVHQRAFAAAAAGPSADRAVVDGAIMLARTVVQLAQAPDERDRVLAAAERRAAT
>NZ_AP022615.1|WP_083073256.1|1027902_1029210_+|hypothetical-protein
MQQLAASRPLVIAGAAAIGASLIALTPTVANDLAADAQRSTVIIQHHAIELADTVANPIQTWVDTFSTLGINLQALWAQFQAVPFALSQQLAANFLQYGVDYVSAFQNAAIAADAQFLNTGSSAYFVPGLELAGTELMSGQIAKGVTQLYNTVWNLPITNIGYKLFPLLNLPGYILQNATNFSNSMAETGVPAFVLQTVFGIPGNFSTALGNGLQAVYDSFTAGDQLGAVINAIDIPGEIANLVLNGTYNGFDGYSEGIFSAAPGGTNGLVQLLTSGGPQIFAADMVAPNAQNIVQGGSIATAFGNFVNTLNFWNPATTSWPTVQSLFDGILGVFRYVLEDIGGAPAAAANGSGFAALAPAASSAMAGLSGGLPGLSAGVLKAFDPAAVTNIAGSLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_163672363.1|1029380_1030448_+|AAA-family-ATPase
MSVGWREWDDEDTTDEVLGATGIWLIPRTRPVLAEPRCRNVTISTGRDARADAVLAAECQEVLEWAQARIDELIGLAEAKEHFTTWRTALQNNHRVEHGGAVTSCRENHMVFLGAPGTAKKTFARIIAEVLFGLGTLTRPQVTEITAHDIVVDDPSHSAARMKTVCDDARGGVLFLDDAHQLVPHTESLSWGGDVIAALQACVADYRGELVVILAGHPTPMREFLTAHAGLAGRFPHTVAFTSPTPDDIVALGHRLAGKENLHVEDTAWELLHTEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPAVTT
>NZ_AP022615.1|WP_158084948.1|1031713_1033033_+|PE-family-protein
MKRKQHNMRRDRRNAKAASRGRVVGLGTAAGAFLTATMTPIAAAPPAQAGVLDLIINPIIQPVMGAVGTAAAAGTTAINGIGAGALAGLHTGALQGITNSLNASAAAFQGVHSAALASITNSLNASAAAFNPGGLTTALESLHASAAAALSGGGLSAAAANSAGNVQLNNLVYGGFSNVYNMIYTAGQSWIASPTGQQVDGVLNAPFLYLFGRDLIGNGVNNFTGPNTTLIGQTGLFGNLQSGGFLFGNGGTGAAGTAAHPLGFTGGAAGLIGNGGNGGVGFPGKAGVPTSNGGAGGAGGLLMGNGGAGGAGGALTAGYFDAATGGAGGSGGLLFGNGGAGGAGGGVGAGAPYASAGTGGAGGNAAWLVGHGGAGGAGAAGPYGGSGGSGGFSGLLAGNGGAGGNGGFGSYAGYGGRGGVGGLAGILGAKGAAGIKPTS
>NZ_AP022615.1|WP_142272906.1|1033153_1034344_+|hypothetical-protein
MIALTPAISNDIASDLQHSAATIQQRAVELTDYVANPIQTWINTFEAAGINLQSLAAQYAQHPFPVPQQMAANFLQYGVQYVTPYTQVANSAVNFFLGTGTNDLVPLLQAAAVAASAGQISTAVLDVYNAVFGKPILDFGAPLETIPQILNPITQNLANTSSYLTTTALQNVGAVVTINLPQSLEQTLGTSLQNVYNSFAAGDPVGGLINAVDIPGALTNTFLNGLPQANGTYSEGLLSAGQYGLVKAIGITTAQGLAQKIVAPKAQNIMTGGSLSYALGQLLNLVTTGFPTPQTIVNNAVNLLQYLFANPSGAAAGAVNVGNFAALAPAASALPGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGANLAGSLATTLSVDLSKAALHILSAL
>NZ_AP022615.1|WP_163672366.1|1034509_1035586_+|AAA-family-ATPase
MSVSWREWDDEDTTDEVLGATGIWLIPRTPPVLVEPRCRIVTTSISRDARTGVGLAAESQEVLEWAQARIEELIGLAEAKEHFTTWRTALQNNPHHHRVEHGGAVTSCRENHMVFLGAPGTAKKTFARVIAEVLFGFGVITRPEVTEITAHDITRDDPSHSAARMKTVCDDARGGVLFLDEAHQLAPHTDNPSLGGDALTTLQTYVADYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPNDIVTLGHRLARKENLTIEDTAWELLRTEATRLRSIPHGHGTLLDAAGNTHYACDVIHTCQRTRLRRLHKLAPHRRDLEHLLHTNPGALHANTTDMQRALTATHPAVMA
>NZ_AP022615.1|WP_142272910.1|1035606_1035888_+|hypothetical-protein
MDDFNRPLALLWTIADGLGFLVLSAMPPQRPGECRSLPADELDIPKKNLSPQNFRQTFADHFKNTQHSNLHELEYLLVETDPSYISNIDSPLR
>NZ_AP022615.1|WP_163672368.1|1036828_1038115_+|hypothetical-protein
MKRKQHSMRRNRRNAKANRGRVVGLSTAAGAFLTATMAPVAAAPPAQAGVLDMIINPIIQPVIGAASTAATAGTTAINGIGAGALAGLQTGALQGLTNTLNASAAAFNPGGLNTALESMHASAAAALNVNSVSAALEGLHASAAAALSGGGLSAAAANPAGNVQLNNLVYGGFSNVYNTIYTAGQTWIASPTGQQLDGVINAPFLYLFGRDLIGNGVNGFTGQNTTLLGQTGLFGNLQSGGFLFGNGGAGAAGTAANPTGLPGGAAGLIGNGGAGGAGFSGVSAGGYGGAGGVGGLLMGHGGAGGVGGAASGVGGYAGSGGAGGNAGLIFGNGGKGGAGGTALAYEGQGGFNGGNGGNSAWLVGNGGIGGAGGAGYYGSFGGNGGLGGLLAGNGGNGGNGGAGLFFNRPGAGGLTGILGQPGVAGSPS
>NZ_AP022615.1|WP_083077634.1|1038168_1039446_+|hypothetical-protein
MQQLAALRPLVAAGVAAMSASMIALTPTAATDLTPDLQHGVAAVEQHAVELTDTVANPIQTWITTFEAAGINIQSLIAQYAQHPFPVAQQVAANFLQYGMQYVNPYTLASKAATNFYLGTAKSSFVPGLQSAIISATQGNITGAVTDLYDAFYGTPIVSILHPLQTIPSIFNPITQNLANASKYLTVTALTNVGSVATIDIPTYAFNTVLGTSLQNVYNSFAAGDPVGGLINTIDIPGAVTNAFLNGLLRPDGTYVSGVLSDGGANVINGLVGVIGITSTQGLAKQIVAPNAQNIMAGGSLSYALGQLLNLVTTGFPTPQTIVDNAVNLLQYLFANPGAAAAAVNVGNLAALAPAASALPGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGSSLGANLAGSLATTLSVDLSKMALHILSAL
>NZ_AP022615.1|WP_163672370.1|1039611_1040688_+|AAA-family-ATPase
MSVGWREWDEEDTTDEVLGATGIWLIPRTRPVLVEPRCRVVTTNTSRDTGADAVLGRERQEVLEWAQARVDELIGLAEAKDHFTMWRTALQNDHHHDGVEHGGAVTSCRESHMVFLGAPGTAKKTFARVIAEVLFGLGTITHPEITEITAHDITADDPSHSAARMKTVCDDARGGVLFLDEAHQLAPHTDNPSLGGDVIAALQACVADYRGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPNDIVTLGHRLARKENLTIEDTAWELLHTEATRLRSIPHGHGTLLDAAGNTHYACDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPPVTA
>NZ_AP022615.1|WP_083076380.1|1040725_1041349_-|uracil-phosphoribosyltransferase
MDVRVIDHPLVAGRLTTLRDERTDNAAFRAALRDLTAMLVYEATRDAGRETFPIRTPLAETLGVRLANPPLLVPVLRAGLGMLDQALALLPEARVGFVGVARDEETHQASGYLESLPDDLTELPVMVLEPMLATGGSMKHTVGLLHRRGATDITVLCAVAVPEGIAALEKAAPNARLFTAAIDDGLNEITYIVPGLGDAGDRQYGPR

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Crispr_ID: NZ_AP022615_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_5

1449296-1449486

Orphan

Consensus_repeat	Method
CTGATCGGCAACGGCGGCAACGG	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP022615_5

>merge|NZ_AP022615|5|1449296-1449486|PILER-CR
CTGATCGGCAACGGCGTCAACGGATTCAACGGCCCCAACACCACGCTGCTCGGCCAAACCGGACTCTTCGGCAACCTGCAAAGCGGCGGATTCCTGTTCGGCAACGGCGGAACCGGTGCGGCCGGCACCGCCACTAATCCCGCCGGCCTGGCCGGTGGGGCCGCCGGGCTGATCGGCAACGGCGGCAACGG

>NZ_AP022615|5|1|1449296-1449486|PILER-CR
CTGATCGGCAACGGCGTCAACGG	ATTCAACGGCCCCAACACCACGCTGCTCGGCCAAACCGGACTCTTCGGCAACCTGCAAAGCGGCGGATTC
CTGTTCGGCAACGGCGGAACCGG	TGCGGCCGGCACCGCCACTAATCCCGCCGGCCTGGCCGGTGGGGCCGCCGGGCTGATC
GGCAACGGCGGCAACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083076750.1\|1439446_1440862_+\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
NZ_AP022615.1\|WP_083074230.1\|1464794_1466009_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_AP022615.1\|WP_083077602.1\|1456784_1458110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083074229.1\|1466034_1466730_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NZ_AP022615.1\|WP_163672386.1\|1450017_1451292_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076779.1\|1436892_1437408_-\|mycothiol-transferase	unknown	unknown	gnl\|CDD\|368218
NZ_AP022615.1\|WP_163672393.1\|1463659_1464787_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083076743.1\|1437418_1437610_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319923
NZ_AP022615.1\|WP_083076757.1\|1441493_1443119_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_AP022615.1\|WP_083077601.1\|1458211_1459261_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083076761.1\|1443327_1443894_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP022615.1\|WP_158084928.1\|1445496_1445619_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236158
NZ_AP022615.1\|WP_083076768.1\|1444938_1445430_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380345
NZ_AP022615.1\|WP_083076764.1\|1443998_1444913_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_AP022615.1\|WP_163672391.1\|1462101_1463442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076747.1\|1437656_1439408_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226179
NZ_AP022615.1\|WP_163672390.1\|1460678_1462028_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|372323
NZ_AP022615.1\|WP_083076754.1\|1440889_1441303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084944.1\|1455351_1456713_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_163672388.1\|1452953_1454021_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083076750.1\|1439446_1440862_+\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	5.13694e-64
NZ_AP022615.1\|WP_083074230.1\|1464794_1466009_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.17556e-155
NZ_AP022615.1\|WP_083074229.1\|1466034_1466730_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	6.43286e-101
NZ_AP022615.1\|WP_083076779.1\|1436892_1437408_-\|mycothiol-transferase	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.07796e-25
NZ_AP022615.1\|WP_163672393.1\|1463659_1464787_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.00707e-43
NZ_AP022615.1\|WP_083076743.1\|1437418_1437610_-\|hypothetical-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.17086e-14
NZ_AP022615.1\|WP_083076757.1\|1441493_1443119_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_AP022615.1\|WP_083077601.1\|1458211_1459261_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.94349e-43
NZ_AP022615.1\|WP_083076761.1\|1443327_1443894_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.57631e-10
NZ_AP022615.1\|WP_158084928.1\|1445496_1445619_+\|hypothetical-protein	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	0.000287336
NZ_AP022615.1\|WP_158084944.1\|1455351_1456713_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00367303
NZ_AP022615.1\|WP_083076764.1\|1443998_1444913_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	0
NZ_AP022615.1\|WP_083076747.1\|1437656_1439408_+\|amidohydrolase-family-protein	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	9.3639e-132
NZ_AP022615.1\|WP_163672390.1\|1460678_1462028_+\|PE-family-protein	gnl\|CDD\|372323	pfam12810, Gly_rich, Glycine rich protein. This family of proteins is greatly expanded in Trichomonas vaginalis. The proteins are composed of several glycine rich motifs interspersed through the sequence. Although many proteins have been annotated by similarity in the family these annotations given the biased composition of the sequences these are unlikely to be functionally relevant.	0.00713947
NZ_AP022615.1\|WP_083076768.1\|1444938_1445430_+\|cupin-domain-containing-protein	gnl\|CDD\|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	4.66953e-18
NZ_AP022615.1\|WP_163672388.1\|1452953_1454021_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	8.54578e-39

>NZ_AP022615.1|WP_158084928.1|1445496_1445619_+|hypothetical-protein
MIGADGAHSTVRKLVGTKLAGSFVGERFLLGTSTPSTHST
>NZ_AP022615.1|WP_083076768.1|1444938_1445430_+|cupin-domain-containing-protein
MSIVVPPYPPPRYTKEEPETSAWLKRADQPPDYETSGVKYHYLANQRATDGDYGLYRVDIAPAGGGPPAHFHRAMSEAFFVLSGTMKLYDGNEWMDGRQGDFLYVPPGGIHGFRNEADEPASILMLFAPGAPREAYFEGFGALADMTDGQRREWFIRHDNFFI
>NZ_AP022615.1|WP_083076764.1|1443998_1444913_+|SDR-family-NAD(P)-dependent-oxidoreductase
MAKWTTANIPDQTGRVTVITGANTGLGYETALALAGHGAHVVLAVRNLDKGKDAAARIAATSPKGEVTLQELDLTSLESIRAAADQLRSGYDRIDLLINNAGVMWTSKSTTKDGFELQFGTNHLGHFALTGLLLDRLLPVAGSRVVTVSSIGHRIRADIHFDDLQWERRYNRVAAYGQAKLANLLFTYELQRRLAPHGTTIAAAAHPGGSSTELTRHLPGLLAPVYGLLEPLIAQDAATGALPQLRAATDPGVLGGQYYGPNGFAETRGHPKVVTSSAKSHDVDRQRRLWAVSEELTGVVYPID
>NZ_AP022615.1|WP_083076761.1|1443327_1443894_-|helix-turn-helix-transcriptional-regulator
MEQPTRPLRADAARNRARVLEVAYETFAAEGLSVPIDEVARRAGVGAGTVYRHFPTKEALFRAVIQDRMQRLVDDGYALLESDGPGEAVFSFLRSIVLRWGATDRGLVDALAGFGIDIASAAPEAEDAFLAVLGELLRAAQQAGTARQDIGVREVKAILVGCQAMEAYNPALAERVTDVVVDGLRAAR
>NZ_AP022615.1|WP_083076757.1|1441493_1443119_-|chaperonin-GroEL
MAKQIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPLSLKRGIEKAVEKVTETLLKSAKEVETKDQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDAERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIQAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADVSLLGKARKVVITKDETTIVEGAGDPDAIAGRVAQIRTEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVALLHASPSLEELKLTGDEATGANIVRVALEAPLKQIAFNSGLEPGVVAEKVRNSPAGTGLNAATGEYEDLLKAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKAAAPAGDPTGGMGGMDF
>NZ_AP022615.1|WP_083076754.1|1440889_1441303_+|hypothetical-protein
MRTQKRVDVKRLAAALADYPFAYLITVDDGYRVHTVTVEPTLRDLPDGPGAILDVGLIGGRTRKNLAQHGDVTLLWPPPEPGGYSLIVDGRAEASDVDDQTTRLGVVPTRALLHRDADSPEAAKGCLHDCVVFSLPA
>NZ_AP022615.1|WP_083076750.1|1439446_1440862_+|PPE-family-protein
MTSPHFAWLPPEINSALIFAGPGAAPLLAAAAAWDALAEDLASSASSFFSVTSDLANGSWQGASSAAMMAVASQYVSWLSAAAAQAEAASSQAGAIAAAFEAALAATIQPAVVAANRALVQALASTNWFGLNAPAIMDTEAAYEAMWASDVAAMFGYHADASAAAAQLAPWQQILEKLGITFNNGQLSFNLFGSAQGNSNIGFGNSGSQNIGSGNSGNNNIGWGNLGNGNVGFGNTGNNDFGIGLTGNNQIGFGGFNSGTGNIGLFNSGNNNIGFFNSGNGNFGIGNSGNFNSGFANAGSANAGFFNSGSSNTGFFQDNGMAGQGSADSSMLSSGRYVTGGVGAASSGVLGSVTAATGGLNSSLPGSGLLNPALSNAAFANPADPSAMSGGLQVGASAGAVSAASGPTPTPPALRTTTSAPAGFFPTGGNDSGFRNPPTRDTGIPSSGFFNKGDRAPGAPNPGIRVPDISD
>NZ_AP022615.1|WP_083076747.1|1437656_1439408_+|amidohydrolase-family-protein
MTYDLLIRNGTIVDGLGGEPYVGDVAVRDGVIKKVAAVGHVNGEAAKREIDATGLLVTPGFVDLHTHYDGQSIWSERLTPSSAHGVTTVVMGNCGVGFAPCRQEDHDVLVDVMAGVEDIPGVVMTDGLPWTWETFPEYLDALDAGKRDIDVAAYLPHSPLRVYVMGQRGANREPATAGDLAKMRALAKEAIEAGALGFASSRLMIHKTESGSPIPSYDAAREEIEEIARGVVDAGGGLLQFVPDIPAGGYQPVLQTVFDVAEDVGLPVTFTLVVANAGDPTWPDAITMIEKANSRAGAGDPRITAQLLPRPIGLIIGLQLSANPFVLYPSYREIAHLPLAERVAEMRKPEVRARILADKPGQGHPILYVAQMWDWIFPLGEHPNYEPDPADSIGARARAKGVDPMEEAYDRLLDDDGRAMLLVATSNLQDNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLAHWARDRKTGRFSVPEAVRELTSVPARVAGLGDRGRIAAGYKADLNVIDHAALRLHKPVIRHDLPAGGRRLDQTADGYVATIVSGEIIAENGIPTHARPGKLVRGRKPIPVPAQ
>NZ_AP022615.1|WP_083076743.1|1437418_1437610_-|hypothetical-protein
MIDHIGITCADYAKSQRFYDAVLGAESLHAPRRWPEYHPGYFGAFVRDPDGNNVEAVWHGGGA
>NZ_AP022615.1|WP_083076779.1|1436892_1437408_-|mycothiol-transferase
MASTDAAAQELLRDSFTRLIEHVDELTDGLTDAVSNYRPAPAANSIAWLIWHSARVQDIQLADVAGVEQVWTRDGWADRFGLDLPRNDTGYGHGPEQVAKVKAPADLLSGYYHAVHKLTLEYIASVTADELARVVDTHWDPPVTASARLVSIVDDCAQHLGQAAYVRGIAP
>NZ_AP022615.1|WP_163672386.1|1450017_1451292_+|hypothetical-protein
MKQLAGSLPLVTAVAGALSAGMIALTPAVSNDLAADIQHSMTDLQQRAVELTDYVANPIQTWIDTFETAGLNLQSIATQFQAYPFVASQQIAANFLHYGSSYVGYYQAAANGAVGYYLGTIPYNVKTNVGSFIPRLQGAVTEAQVGNISGAVSTLYQALWNEFVLQVAHPLESIPQIINPITANLSNASSYLTVTAMSNVLGSLLTNVPNQMELALGAALQNVYNSFAAGDPVGGLINAIDVPGEVINAGLNGSLNAKGVYISGLISESTPSFLSYLALTTPQGLASKIVAPNAQNIMSGGSLSYALGYLGNVVTTGFPTPQIVFDNLLNVIRTYAGIPSAAAAAAANGSGFAALAPAASALPGLSAGVLKAFDPAAVTNIAGSLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_163672388.1|1452953_1454021_+|AAA-family-ATPase
MSVGWREWDDEDTTDEVLGATGIWLIPRTRPVLAEPRCRNVTISTGRDARADAVLAAECQEVLEWAQARIDELIGLAEAKEHFTTWRTALQNNHRVEHGGAVTSCRENHMVFLGAPGTAKKTFARIIAEVLFGLGTLTRPQVTEITAHDIVVDDPSHSAARMKTVCDDARGGVLFLDDAHQLVPHTESLSWGGDVIAALQACVADYRGELVVILAGHPTPMREFLTAHAGLAGRFPHTVAFTSPTPDDIVALGHRLAGKENLHVEDTAWELLRAEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLVRTNPGVLHVNTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_158084944.1|1455351_1456713_+|PE-family-protein
MKRKQHSMRRDRRNAKAASRGRVVGLGTAAGALLTATMTPVIAAPPAQAGVLDLIINPIIQPIMGAVGTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNAGAAAFQGVHSAALASITNSLNASAAAFNAGGLNAALEGLHASAAAAFSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINGPFVALFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTASSPTGFAGGAAGLIGNGGVGGAGFSTASGVGGTGGIGGVGGILMGNGGAGGAGGAAATNKGGVGGVGGAAGILFGNGGAGGVGGASGVSAVKGFDGGAGGAGGNAAWLIGNGGAGGLGNNGTAVASGTGAVGNGGAGGAGGFSGLLAGVGGSGGNGGNGAADTSRVGTGGMGGLGGYAGILGLNGTAGTPGAPG
>NZ_AP022615.1|WP_083077602.1|1456784_1458110_+|hypothetical-protein
MHQRTVLRPLITAGAAAVGASLIALTPAVSNDAASDLQRSVTTAQYRAVELLSSDPGVVNPIQTWINVFQQAGANLQTIGSNMSTGGTIFFPLAQQLAANWITYASIYVGGVHNAYKGAVNGAYQFFTNMTGYSVYPLLTGVISSFHQGDFINGFEDLYRLLWFSPVASIFQPMESIPTILAYMSTNFAALGNVAFNEPSQLSASIVSMLGAFFAIGVGQSIVSALGVGVQNAYDGFAAGDLPAGVSNLLNIPGMLAGAVLNGYDPLEVLGGTGILSPTTSLTKPGLLDTLVAWIPQTLASEIVVNNRVAGTITTPNILQGGSLANAFSQLASQVTTGWPTPNMWVDELLNVYQSFLGFLGGQVGLGGAAFAAPAGVASIAPSIAANLGGIAPSIAADFSGIAPSLAADLSGIAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_083077601.1|1458211_1459261_+|AAA-family-ATPase
MSNVNSMADLALAEDWCRPGAYAGTALACERQEVLDWAQARIDELIGLAEAKEHFQVWRTALEAGRHGVEPGGAIRENHLVFLGAPGTAKKTFARVISEVLFGWDMITRPEVTVVSAADIAVDGPSGSATSRMQQVCARARGGVLFIDEAYQLAPDTDDDPCWGIEAIYALLTCMAAYRDELVVIMAGYARPMRDFLTVHAGLAARFPFTVTFASYTPADIVGIGRRFAAKERLVVHDAAWDLLGEEVIRLQSIPYGNGTLLDAAGNAHYVHEVIGACQRARVRRLHRRAPNRRDLRQLMRTDPRVLQVNATDMGRAITATRPATAISAYQRLFPNTQTQETPTPSTTG
>NZ_AP022615.1|WP_163672390.1|1460678_1462028_+|PE-family-protein
MKRKQHSMRRRDRRNTKAASRGRVVGLGTAAGALLTATMTPVVAAPSAQAGVLDLIINPIIQPVMGAASTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLNAALEGLHASAAAAFSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINGPFVALFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTAAHHTGFAGGAAGLIGNGGVGGAGFSNASGVGGTGGIGGVGGILMGNGGAGGVGGFGYTSSSAGNGVGGAGGAAGILFGNGGAGGAGGNAGPGGWYTGKGGAGGNAAWLVGNGGAGGNAPNAPSGGGAYGGGGAGGAGGFSGLLAGNGGVGGNGGSATPGYGYAGGKGGLGGLAGILGQIGAAGTNGTHG
>NZ_AP022615.1|WP_163672391.1|1462101_1463442_+|hypothetical-protein
MHQRTALRPLITAGAAALGASLIALTPAVSNDAASDLQRSVTTAQQRAVELLSSDPGVVNPIQTWINVFQQAGANLQTIGSNMSTGGKIFFPLAQQLAANWITYASIYVGQTGPGAVGGTFANAYKGAVNGAYNFSTNAFFPDLATAITDMRQGNFISGFSTLYNALWYGPISQIFQPMESIPTILAYMSTNFAALGNLAFNEPSELSSSIVSMLGAFFAVGVSSSIFGALGNGLQNVYDAFAAGDLPAGVTNFLNIPGLLAGAILNGYMSPGYLSGTGILTPTSGLLTPGLLNTLAVWIPQTLASNIVVNSQVKGTIATPNILAGGSLANAFSQLASQVTTGWPTPNMWFNGLVNAYQTFLATLGAQVGLGGAAFAAPAGVVGIAPSLAANLGGIAPSIAADFSGIAPSLAADLSGLAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672393.1|1463659_1464787_+|AAA-family-ATPase
MSNVNSTAAALALTEDWCLGGRDAYAGTALAAERREVLEWAQARIGELIGLQSAKDRFAVWLGQHDAQHQGVVASCSEHHMVFLGAPGTAKTTFARVVAEVLFGLGVITRPEVTEVSAHDIATGSPSHSAARMKNVCGRARGGVLFLDEAYRLAPDTEDHSLGVEAIYTLLTCMAAYRDELVVILAGHARPMQDFLAVHAGLGVQFPFTATFTSYTPNDIVAIGRHLASRAQLVVQDAAWDLLRTEATRLRSIPYGHGTLLDVAGNARYAREVIGACQRARVRRLHRRAPSRRDLRQLLCTDPRVLHVSATDMRRAIAASLPAAAISAYRRLYPSTETQEHNTFRQPDTTTVDPPPATPEHVDSHDTATHRQRGR
>NZ_AP022615.1|WP_083074230.1|1464794_1466009_+|molybdopterin-molybdotransferase-MoeA
MRSVEEHQRVVAEMIRARPVATVALAEAQGLVLAEDVVAQLALPVFDNSAMDGYAVRAEDISNATPEHPVALPVAEDIPAGRTDQLTLQPGTAHRIMTGAPLPAGATAIVPVEDTDGGVESVVIRQHREPSKHIRRAGEDVAAGTTVLRTGQVVTPAVLGLAAALGLAGLPVIPRQRVLVISTGTELVAPGTPLRPGQIYESNSIMLAGAVREAGADVIAVATAEDDVAQFSAILDRHAASETPADLIITSGGVSAGAYEVVKDAFGRDGDQGVEFVKVAMQPGMPQGIGRVAGTTIVTLPGNPVSALVSFEVFIRPALRKAMGLPDPERPRRPAVLAESLTSPRGKRQFRRAILDSEAGTVTSYGPPASHHLRWLASANGLLEIPEDVVEVPAGTQLQVWDLS
>NZ_AP022615.1|WP_083074229.1|1466034_1466730_+|phosphatidylserine-decarboxylase
MARRPRTEGPKHVVELVRSTVPPVHPAGLPFVAAGLGVALAGRKFRWLRRAGLLAAGASAAFFRHPPRVPPSRPGAVVAPADGVICVIDAAAPPAELGMGDAPLPRVSIFLSLLDAHVQRAPVSGEVVAAQHKPGRFGSADLAAASTENERTSLRIRTDAGADIVAVQIAGLLARRIVCDAHVGDKLSIGDTYGLIRFGSRLDTYLPPGTEPLVEVGQRAVAGETVLAELP

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Crispr_ID: NZ_AP022615_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_6

1460971-1461061

Orphan

Consensus_repeat	Method
TCACCAACAGCCTCAACGCCAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_6

>merge|NZ_AP022615|6|1460971-1461061|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGCGGCGGCCTTCCAGGGGGTGCATTCGGCCGCCCTGGCCAGCATCACCAACAGCCTCACCGCCAGCGC

>NZ_AP022615|6|5|1460971-1461061|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGC	GGCGGCCTTCCAGGGGGTGCATTCGGCCGCCCTGGCCAGCA
TCACCAACAGCCTCACCGCCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083074230.1\|1464794_1466009_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
NZ_AP022615.1\|WP_083077602.1\|1456784_1458110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083074226.1\|1469935_1471378_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|282319
NZ_AP022615.1\|WP_163672386.1\|1450017_1451292_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672391.1\|1462101_1463442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672393.1\|1463659_1464787_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083074229.1\|1466034_1466730_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NZ_AP022615.1\|WP_163672388.1\|1452953_1454021_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083076761.1\|1443327_1443894_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP022615.1\|WP_158084928.1\|1445496_1445619_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236158
NZ_AP022615.1\|WP_083076768.1\|1444938_1445430_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380345
NZ_AP022615.1\|WP_142272838.1\|1448647_1449931_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|147458
NZ_AP022615.1\|WP_083074245.1\|1472828_1473761_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235736
NZ_AP022615.1\|WP_083076764.1\|1443998_1444913_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_AP022615.1\|WP_083074224.1\|1473757_1474330_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022615.1\|WP_083074225.1\|1471374_1472832_+\|long-chain-fatty-acyl-CoA-reductase	unknown	unknown	gnl\|CDD\|143399
NZ_AP022615.1\|WP_158084944.1\|1455351_1456713_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_083074228.1\|1466726_1467590_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_AP022615.1\|WP_083077601.1\|1458211_1459261_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083074227.1\|1467586_1469755_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273521

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083074230.1\|1464794_1466009_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	7.17556e-155
NZ_AP022615.1\|WP_083074226.1\|1469935_1471378_+\|hypothetical-protein	gnl\|CDD\|282319	pfam04443, LuxE, Acyl-protein synthetase, LuxE. LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyzes the formation of an acyl-protein thioester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalyzed bioluminescence reaction A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The carboxyl terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction. This family also includes Vibrio cholerae RBFN protein, which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid.	8.46123e-06
NZ_AP022615.1\|WP_083074227.1\|1467586_1469755_+\|AAA-family-ATPase	gnl\|CDD\|273521	TIGR01243, Cell_division_cycle_protein_48_homolog_MJ1156, AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.	2.4977e-127
NZ_AP022615.1\|WP_083076761.1\|1443327_1443894_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.57631e-10
NZ_AP022615.1\|WP_163672388.1\|1452953_1454021_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	8.54578e-39
NZ_AP022615.1\|WP_083074229.1\|1466034_1466730_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	6.43286e-101
NZ_AP022615.1\|WP_083077601.1\|1458211_1459261_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.94349e-43
NZ_AP022615.1\|WP_163672393.1\|1463659_1464787_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.00707e-43
NZ_AP022615.1\|WP_142272838.1\|1448647_1449931_+\|hypothetical-protein	gnl\|CDD\|147458	pfam05268, GP38, Phage tail fibre adhesin Gp38. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, gp57, catalyzes the organisation of gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition.	0.00414648
NZ_AP022615.1\|WP_083074245.1\|1472828_1473761_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235736	PRK06196, PRK06196, oxidoreductase; Provisional.	6.67842e-100
NZ_AP022615.1\|WP_083076764.1\|1443998_1444913_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	0
NZ_AP022615.1\|WP_158084928.1\|1445496_1445619_+\|hypothetical-protein	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	0.000287336
NZ_AP022615.1\|WP_083074224.1\|1473757_1474330_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.21148e-12
NZ_AP022615.1\|WP_083074225.1\|1471374_1472832_+\|long-chain-fatty-acyl-CoA-reductase	gnl\|CDD\|143399	cd07080, ALDH_Acyl-CoA-Red_LuxC, Acyl-CoA reductase LuxC. Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.	3.47195e-100
NZ_AP022615.1\|WP_158084944.1\|1455351_1456713_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00367303
NZ_AP022615.1\|WP_083074228.1\|1466726_1467590_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.3096e-73
NZ_AP022615.1\|WP_083076768.1\|1444938_1445430_+\|cupin-domain-containing-protein	gnl\|CDD\|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	4.66953e-18

>NZ_AP022615.1|WP_083077601.1|1458211_1459261_+|AAA-family-ATPase
MSNVNSMADLALAEDWCRPGAYAGTALACERQEVLDWAQARIDELIGLAEAKEHFQVWRTALEAGRHGVEPGGAIRENHLVFLGAPGTAKKTFARVISEVLFGWDMITRPEVTVVSAADIAVDGPSGSATSRMQQVCARARGGVLFIDEAYQLAPDTDDDPCWGIEAIYALLTCMAAYRDELVVIMAGYARPMRDFLTVHAGLAARFPFTVTFASYTPADIVGIGRRFAAKERLVVHDAAWDLLGEEVIRLQSIPYGNGTLLDAAGNAHYVHEVIGACQRARVRRLHRRAPNRRDLRQLMRTDPRVLQVNATDMGRAITATRPATAISAYQRLFPNTQTQETPTPSTTG
>NZ_AP022615.1|WP_083077602.1|1456784_1458110_+|hypothetical-protein
MHQRTVLRPLITAGAAAVGASLIALTPAVSNDAASDLQRSVTTAQYRAVELLSSDPGVVNPIQTWINVFQQAGANLQTIGSNMSTGGTIFFPLAQQLAANWITYASIYVGGVHNAYKGAVNGAYQFFTNMTGYSVYPLLTGVISSFHQGDFINGFEDLYRLLWFSPVASIFQPMESIPTILAYMSTNFAALGNVAFNEPSQLSASIVSMLGAFFAIGVGQSIVSALGVGVQNAYDGFAAGDLPAGVSNLLNIPGMLAGAVLNGYDPLEVLGGTGILSPTTSLTKPGLLDTLVAWIPQTLASEIVVNNRVAGTITTPNILQGGSLANAFSQLASQVTTGWPTPNMWVDELLNVYQSFLGFLGGQVGLGGAAFAAPAGVASIAPSIAANLGGIAPSIAADFSGIAPSLAADLSGIAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_158084944.1|1455351_1456713_+|PE-family-protein
MKRKQHSMRRDRRNAKAASRGRVVGLGTAAGALLTATMTPVIAAPPAQAGVLDLIINPIIQPIMGAVGTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNAGAAAFQGVHSAALASITNSLNASAAAFNAGGLNAALEGLHASAAAAFSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINGPFVALFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTASSPTGFAGGAAGLIGNGGVGGAGFSTASGVGGTGGIGGVGGILMGNGGAGGAGGAAATNKGGVGGVGGAAGILFGNGGAGGVGGASGVSAVKGFDGGAGGAGGNAAWLIGNGGAGGLGNNGTAVASGTGAVGNGGAGGAGGFSGLLAGVGGSGGNGGNGAADTSRVGTGGMGGLGGYAGILGLNGTAGTPGAPG
>NZ_AP022615.1|WP_163672388.1|1452953_1454021_+|AAA-family-ATPase
MSVGWREWDDEDTTDEVLGATGIWLIPRTRPVLAEPRCRNVTISTGRDARADAVLAAECQEVLEWAQARIDELIGLAEAKEHFTTWRTALQNNHRVEHGGAVTSCRENHMVFLGAPGTAKKTFARIIAEVLFGLGTLTRPQVTEITAHDIVVDDPSHSAARMKTVCDDARGGVLFLDDAHQLVPHTESLSWGGDVIAALQACVADYRGELVVILAGHPTPMREFLTAHAGLAGRFPHTVAFTSPTPDDIVALGHRLAGKENLHVEDTAWELLRAEAARLRSIPYGHGTLLDVAGNAHYACDVILTCRRARLRRLHRLAPHRRDLEHLVRTNPGVLHVNTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_163672386.1|1450017_1451292_+|hypothetical-protein
MKQLAGSLPLVTAVAGALSAGMIALTPAVSNDLAADIQHSMTDLQQRAVELTDYVANPIQTWIDTFETAGLNLQSIATQFQAYPFVASQQIAANFLHYGSSYVGYYQAAANGAVGYYLGTIPYNVKTNVGSFIPRLQGAVTEAQVGNISGAVSTLYQALWNEFVLQVAHPLESIPQIINPITANLSNASSYLTVTAMSNVLGSLLTNVPNQMELALGAALQNVYNSFAAGDPVGGLINAIDVPGEVINAGLNGSLNAKGVYISGLISESTPSFLSYLALTTPQGLASKIVAPNAQNIMSGGSLSYALGYLGNVVTTGFPTPQIVFDNLLNVIRTYAGIPSAAAAAAANGSGFAALAPAASALPGLSAGVLKAFDPAAVTNIAGSLGPSLAAEVAGSLGANLAGSLATTLSVDLSKVALHILSAL
>NZ_AP022615.1|WP_142272838.1|1448647_1449931_+|hypothetical-protein
MKRKQHNMRRDHRSRNAKAARRGRVVGLGTAAGALLTAVGAPMAAAPPAQAGVLDMIINPIIQPVMGAVGTAANAGTTAINGIGAGALAGLHTAALEGITNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLNAALEGLHASAAAAFSGGGLSAAAANSAGNVQLNNLVYGGFSNVYNMIYTAGQSWLVSPTGQQVDGILNAPFLYLFGRDLIGNGVNGFNGPNTTLLGQTGLFGNLQSGGFLFGNGGTGAAGTATNPAGLAGGAAGLIGNGGNGGTGANITSSGLNLNIGGAGGPGGILMGNGGAGGIGGDTIGLFGGDGGQGGAGGFLFGNGGTGGAGSPVGTATVTGAGGTGGNSAWLVGNGGLGGSASGGSKGGAGGLGGMLAGNGGTGGNATTAKVIGAGGLAGLLGQNGSPGSVNP
>NZ_AP022615.1|WP_158084928.1|1445496_1445619_+|hypothetical-protein
MIGADGAHSTVRKLVGTKLAGSFVGERFLLGTSTPSTHST
>NZ_AP022615.1|WP_083076768.1|1444938_1445430_+|cupin-domain-containing-protein
MSIVVPPYPPPRYTKEEPETSAWLKRADQPPDYETSGVKYHYLANQRATDGDYGLYRVDIAPAGGGPPAHFHRAMSEAFFVLSGTMKLYDGNEWMDGRQGDFLYVPPGGIHGFRNEADEPASILMLFAPGAPREAYFEGFGALADMTDGQRREWFIRHDNFFI
>NZ_AP022615.1|WP_083076764.1|1443998_1444913_+|SDR-family-NAD(P)-dependent-oxidoreductase
MAKWTTANIPDQTGRVTVITGANTGLGYETALALAGHGAHVVLAVRNLDKGKDAAARIAATSPKGEVTLQELDLTSLESIRAAADQLRSGYDRIDLLINNAGVMWTSKSTTKDGFELQFGTNHLGHFALTGLLLDRLLPVAGSRVVTVSSIGHRIRADIHFDDLQWERRYNRVAAYGQAKLANLLFTYELQRRLAPHGTTIAAAAHPGGSSTELTRHLPGLLAPVYGLLEPLIAQDAATGALPQLRAATDPGVLGGQYYGPNGFAETRGHPKVVTSSAKSHDVDRQRRLWAVSEELTGVVYPID
>NZ_AP022615.1|WP_083076761.1|1443327_1443894_-|helix-turn-helix-transcriptional-regulator
MEQPTRPLRADAARNRARVLEVAYETFAAEGLSVPIDEVARRAGVGAGTVYRHFPTKEALFRAVIQDRMQRLVDDGYALLESDGPGEAVFSFLRSIVLRWGATDRGLVDALAGFGIDIASAAPEAEDAFLAVLGELLRAAQQAGTARQDIGVREVKAILVGCQAMEAYNPALAERVTDVVVDGLRAAR
>NZ_AP022615.1|WP_163672391.1|1462101_1463442_+|hypothetical-protein
MHQRTALRPLITAGAAALGASLIALTPAVSNDAASDLQRSVTTAQQRAVELLSSDPGVVNPIQTWINVFQQAGANLQTIGSNMSTGGKIFFPLAQQLAANWITYASIYVGQTGPGAVGGTFANAYKGAVNGAYNFSTNAFFPDLATAITDMRQGNFISGFSTLYNALWYGPISQIFQPMESIPTILAYMSTNFAALGNLAFNEPSELSSSIVSMLGAFFAVGVSSSIFGALGNGLQNVYDAFAAGDLPAGVTNFLNIPGLLAGAILNGYMSPGYLSGTGILTPTSGLLTPGLLNTLAVWIPQTLASNIVVNSQVKGTIATPNILAGGSLANAFSQLASQVTTGWPTPNMWFNGLVNAYQTFLATLGAQVGLGGAAFAAPAGVVGIAPSLAANLGGIAPSIAADFSGIAPSLAADLSGLAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672393.1|1463659_1464787_+|AAA-family-ATPase
MSNVNSTAAALALTEDWCLGGRDAYAGTALAAERREVLEWAQARIGELIGLQSAKDRFAVWLGQHDAQHQGVVASCSEHHMVFLGAPGTAKTTFARVVAEVLFGLGVITRPEVTEVSAHDIATGSPSHSAARMKNVCGRARGGVLFLDEAYRLAPDTEDHSLGVEAIYTLLTCMAAYRDELVVILAGHARPMQDFLAVHAGLGVQFPFTATFTSYTPNDIVAIGRHLASRAQLVVQDAAWDLLRTEATRLRSIPYGHGTLLDVAGNARYAREVIGACQRARVRRLHRRAPSRRDLRQLLCTDPRVLHVSATDMRRAIAASLPAAAISAYRRLYPSTETQEHNTFRQPDTTTVDPPPATPEHVDSHDTATHRQRGR
>NZ_AP022615.1|WP_083074230.1|1464794_1466009_+|molybdopterin-molybdotransferase-MoeA
MRSVEEHQRVVAEMIRARPVATVALAEAQGLVLAEDVVAQLALPVFDNSAMDGYAVRAEDISNATPEHPVALPVAEDIPAGRTDQLTLQPGTAHRIMTGAPLPAGATAIVPVEDTDGGVESVVIRQHREPSKHIRRAGEDVAAGTTVLRTGQVVTPAVLGLAAALGLAGLPVIPRQRVLVISTGTELVAPGTPLRPGQIYESNSIMLAGAVREAGADVIAVATAEDDVAQFSAILDRHAASETPADLIITSGGVSAGAYEVVKDAFGRDGDQGVEFVKVAMQPGMPQGIGRVAGTTIVTLPGNPVSALVSFEVFIRPALRKAMGLPDPERPRRPAVLAESLTSPRGKRQFRRAILDSEAGTVTSYGPPASHHLRWLASANGLLEIPEDVVEVPAGTQLQVWDLS
>NZ_AP022615.1|WP_083074229.1|1466034_1466730_+|phosphatidylserine-decarboxylase
MARRPRTEGPKHVVELVRSTVPPVHPAGLPFVAAGLGVALAGRKFRWLRRAGLLAAGASAAFFRHPPRVPPSRPGAVVAPADGVICVIDAAAPPAELGMGDAPLPRVSIFLSLLDAHVQRAPVSGEVVAAQHKPGRFGSADLAAASTENERTSLRIRTDAGADIVAVQIAGLLARRIVCDAHVGDKLSIGDTYGLIRFGSRLDTYLPPGTEPLVEVGQRAVAGETVLAELP
>NZ_AP022615.1|WP_083074228.1|1466726_1467590_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MISKPRGRRTVNLQILPSAMTVLSICAGLTSIKFALEHQPKAAMALIAAAAILDGLDGRVARILDAQSRMGEEIDSLADAVNFGVTPAIVLYVTMLAESPAGWIVVLLYAVCVVLRLARYNTLQDDGTQPAYAHEFFVGMPAPAGAVSMIGLIGLKLQFGDGWWTSPVFLCVWVTGTSVLMVSKIPMRKMHAVAVPPNWAAPLLAVLAICAAAAVLAPYLLIWVIIVAYLCHVPFAVRNQRWLAAHPEAWDDKPKQRRAARRANRRAQPNRRSMARLGLRKPSGRLP
>NZ_AP022615.1|WP_083074227.1|1467586_1469755_+|AAA-family-ATPase
MTPAGEGAARQLTLTARLNTSAVDSRRGVVRLHPNVVAALGIREWDAVSLTGSRTTAAVAGLAGPDNPVGTALLDDVTLSNAGLREGTAVIVSAVTVYGARSVTLSGSSMATNSITPITLRQALLGKVMTVGDAVSLLPRDLGPGTTTSPATRALAASVGISWTSELLTVTGVDPEGPVSVQPNSLVTWGTGVGTPAREQLITGTPEILVEELKGTQPQAAKLTEWLKLSLDEPHLLKTLGAGANLGVLVSGPAGVGKVTLVRAVCDGRRLIELDGPEVGALAADDRLKTVASAVKRVRDGGGVLLIADADALLPATAEPVAALILGELRAAVATEGVALIATSARPDQLDARLRAPDLCDRELGLPLPDAPTRRALLEALLKPVPTGDLNIEEIARRTPAFVVADLAALVREAALRAASRASTDGRPPRLNQDDLAGALTVIRPLSRSAGEELSVGSVTLDDVGDMAEARRSLTEAVLWPLQHPDTFARLGVDPPRGVLLYGPPGCGKTFVVRALASTGQLSVHAVKGSELMDKWVGSSERAVRELFRRARDSAPSLMFLDEVDALAPRRGQSFDSGVTDRVVAALLTELDGIDPLRDVVVLGATNRPDLIDPALLRPGRLERLVFIEPPDAAARHEILRTAGKSIPLSADVDLGEVAAELEGYSAADCVALLREAALTAMRRSIDAADVTAADLAAARKTVRPSLDPAQVESLRAFAKAL
>NZ_AP022615.1|WP_083074226.1|1469935_1471378_+|hypothetical-protein
MTSTAARPVDDFMNDPIGFFGQSYTRMHSIDRGELEGLQRRAMGIRFREHYDSIEMLRKLADRLGITALNEFNDVVPLLFSHTAFKSYPAALIDKKRFDLMTRWLDKLTSYDLSGVDTTGCIGIDDWIDRLDEQTPLEVITSSGTTGTISILPKDKRGAEEGMTLWKICLFQTFGQEPTEAELNPSVDVVWPNFANGKLGHLRIANMIKRGFTGGDESRFHALYPGAIDTDLMFLASKMRAAASRGELDRLEIDPALAARKDEFVAMQARQAQDMDAFFTRLSDQLRGRRVFMLGTYHLMYDIARAGLERGVRNVFAPDSAILTGGGMKGVALPHDFMDVIKEFLGVQRIQVGYGFSESSTFHWGCTEGRYHVAPWVIPFVLDPDTSEPLPRTGVRTGRAAVYDILLRAHWGGVISGDEVTIDWDLRCPCGQASVAFEPDIIRYSEKKGLKNGQEDDRITCAATHEVHNEAVNFMKGVDL
>NZ_AP022615.1|WP_083074225.1|1471374_1472832_+|long-chain-fatty-acyl-CoA-reductase
MIAYTVPLFLRGQVITDDLVPYGTRTGDWQFRAPDMAKYVARLPLNSPAEMSDLHDVSFDEILDVLEALGGALDFESNTHLQEAYEASLVANVLPAEMLKNSYRVLGPLFSRDNVTEIADSQVGLDYLNGWVPHKLHDGRELRVRAFGSRVLHIPAGNGGLVSAVTILRSVITRSDAIIKAPSNDPLTAIAIARTLADVAPNHPITRHLAVGYWKGGDSGVEEALYRPQHIEKIVAWGGLASVKHVTRYIQPGLELIALDPKRSATIIGREAFDDEDTMREVARRAATDIGVANQEGCANARVIYVLSGTDPEGLANANRFGELVYRELMSLPPVISTPPRYPNRELLDHLEASRMADDFYRVIGGERREGAIVVSQFDEAVDYSPMLSGRVANVVPVDSIDKVTAAVNAYTQTIGVYPESLKRRLRNTLPLFGAQRLTTLGYACSVAVAAPQDAIEPIRRMCKWIVDEECDPEVVIPLWRLTPA
>NZ_AP022615.1|WP_083074245.1|1472828_1473761_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTERPTALDVVDGIDLSGKVCVITGASSGLGRESARALAAAGAHVVLAARDEDALAQTARWIAAEVPGSRTSTVRLDLTALASVRAAADAISDVAPTIDVLMNNAGVMFTPFGRTRDGFEIQVGTNHFGHFELTRLLVPQLAAAGGARIVTLSSGGHLMGDVDFDDPNWESREYDKFVAYGASKTANILHAKEADRRLRELGIRAFAVHPGTVATALARYMSRSDFSELRKLVVDNSAARGKRSDGFLDFTTPEQGAATQVWAAVSPELRDKGALYLEDCGVSDAVAPYARDERRAADWWALSEKLCDRA
>NZ_AP022615.1|WP_083074224.1|1473757_1474330_+|TetR/AcrR-family-transcriptional-regulator
MNRLERRKLEVREKILAAAFELFLRNGVAATTIEEICERADVANRTFFNHFATRQDMIRALARRRLVNLHDVVFDRVDQPIPDRLIGVFDDIAAALAESGDTYRELIGHMLATSGYGIQRGFDLHDTFVELVKEGIARGEVGARHDPETLADIIVGALSGGILNWTVDRTYSLETNLHNLGVALAELLSG

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Crispr_ID: NZ_AP022615_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_7

1825135-1825225

Orphan

Consensus_repeat	Method
GCATCACCAACAGCCTCAACGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_7

>merge|NZ_AP022615|7|1825135-1825225|CRISPRCasFinder
GCATCACCAACAGCCTCAACGCCAGCGCCGCCGCCTTCCAGGGTGTGCATTCGGCCGCCCTGGCCAGCATCACCAACAGCCTCACCGCCAG

>NZ_AP022615|7|6|1825135-1825225|CRISPRCasFinder
GCATCACCAACAGCCTCAACGCCAG	CGCCGCCGCCTTCCAGGGTGTGCATTCGGCCGCCCTGGCCA
GCATCACCAACAGCCTCACCGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083075792.1\|1822527_1823583_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083075802.1\|1813084_1814737_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|169098
NZ_AP022615.1\|WP_083075794.1\|1821089_1822379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084950.1\|1831684_1833019_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_163672411.1\|1815399_1815579_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672413.1\|1834613_1835594_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083075805.1\|1811191_1812061_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_AP022615.1\|WP_142272779.1\|1818615_1819356_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|234713
NZ_AP022615.1\|WP_142272900.1\|1838388_1839708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083077645.1\|1833093_1834389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_163672414.1\|1839932_1841114_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_142272915.1\|1828260_1829268_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083075797.1\|1816179_1816662_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_AP022615.1\|WP_083075803.1\|1812062_1812869_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NZ_AP022615.1\|WP_083075806.1\|1809878_1811186_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|378749
NZ_AP022615.1\|WP_083077642.1\|1829435_1830482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083077655.1\|1826587_1828225_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_AP022615.1\|WP_083075798.1\|1815587_1816031_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176861
NZ_AP022615.1\|WP_142272778.1\|1826179_1826485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084946.1\|1837004_1838333_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083075792.1\|1822527_1823583_+\|hypothetical-protein	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	5.06023e-38
NZ_AP022615.1\|WP_083075802.1\|1813084_1814737_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|169098	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_AP022615.1\|WP_158084950.1\|1831684_1833019_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000287968
NZ_AP022615.1\|WP_163672413.1\|1834613_1835594_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.38138e-39
NZ_AP022615.1\|WP_083075805.1\|1811191_1812061_-\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	4.95074e-81
NZ_AP022615.1\|WP_142272779.1\|1818615_1819356_-\|site-specific-integrase	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	6.71048e-05
NZ_AP022615.1\|WP_083075797.1\|1816179_1816662_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	6.97669e-35
NZ_AP022615.1\|WP_083075803.1\|1812062_1812869_-\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	1.18873e-87
NZ_AP022615.1\|WP_083075806.1\|1809878_1811186_-\|MCE-family-protein	gnl\|CDD\|378749	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative. Mce4_CUP1 is a family of putative Mce4 transporters of cholesterol. The domain is found associated with pfam02470. The full TCDB classification for this family in conjunction with PF02470 is TC:3.A.1.27.4.	1.05308e-110
NZ_AP022615.1\|WP_083077642.1\|1829435_1830482_+\|hypothetical-protein	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	6.60673e-38
NZ_AP022615.1\|WP_083077655.1\|1826587_1828225_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	4.78707e-12
NZ_AP022615.1\|WP_083075798.1\|1815587_1816031_-\|SRPBCC-family-protein	gnl\|CDD\|176861	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.87012e-47
NZ_AP022615.1\|WP_163672414.1\|1839932_1841114_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.5212e-40
NZ_AP022615.1\|WP_158084946.1\|1837004_1838333_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00841677

>NZ_AP022615.1|WP_083075792.1|1822527_1823583_+|hypothetical-protein
MSVGSREWDESDAADEVLGATGVWLIPRAPTMVESRCRVVTTDASRDAHAGTVLSREHQEVLEWAQARVDELIGVVEAKERFAGWRTVLQTSQHSGAVTSCADNHMVFLGAPGTAKRTFARVIGEVLFGLGTIARPGVTEVAAEDVVVGGLSRSAVAMKSVCDDARGGVLFIEEAYRLAPQTAGHSWGVDALTMLQTCMAEYRDELVVILAGYPDPMQEFFTAHDGLAGRFPHTMSFASYTPEEVVAIGRRLAGKENLVVGEVVWELLRAEAARLRSIPYGHATLLDAAGNAHYAYDVVSMCRRARLRRLNRLAPNRGDLKHLVRTDPGVLHVNTTDMQRALTASHPAVTT
>NZ_AP022615.1|WP_083075794.1|1821089_1822379_+|hypothetical-protein
MQQLTALRPLVTAGAAALGASLIALTPAVSNDAASALQHSVAAAQQRAVELASTDYAVNPLQTWLDVFTNAAANLQTIGADWAQIPAVLGQQFAANLIQYANLYVGSYQSAANGALQFYTSTVTSHPGVPTNFWPVLAQGLADFQSGQIASGIDQVGFALLQGPISAVLQPMENTLQIPIYFTQNIANATDALLKTSNGGVIESVGAYALFGFSGTLEHSLGDSLQAAYDAFAAGDPVDGVLNLLNTPGAVANGVINGYNGSQGLLSPENGVLQSGLLSIFANLAPQNLAKAIVVPGGTNITNGGSLATAWGSFLNMAAGGWPSPNEIVNNILNLFQTYAGLPGLASAANVGGVVPAAALAGLPGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGSSLGANLAGSLATTLSVDLSRVALHILSAL
>NZ_AP022615.1|WP_142272779.1|1818615_1819356_-|site-specific-integrase
MVSVPGRHLAMQADRKAHHTIDSYLRGARYYLTWRAAKPDAHPFTRAARQRWIAHLLDSGAQPATARIRHQAVRRFAAWLADKQRIDHDPFLDPTPPQIDTEIVERLTNKRTVVDAQSLRRQPPPQPPRTKPGYDHWWNWNAHKGAPRAIPTRPQPTGAIIIRKAKGGQGRHVPFPTQTGAVIDRYPCLRHHHRLRHPLLLLGRCRRLPHAGRRLVHPTNGRPPQQRHPRRTRPHRNPTPKTRRPR
>NZ_AP022615.1|WP_083075797.1|1816179_1816662_-|acyl-CoA-thioesterase
MSSVPVVPPAPNELTSKDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGLDPLTTPSPGIVAESGCRYFSELRFPEALVVGLAVTRLGNSSVTYRLGVFQCGEGDEEHPARPITALGHWVHVYVDRTSRKPVPIPAAIRSLLSTARVGQ
>NZ_AP022615.1|WP_083075798.1|1815587_1816031_-|SRPBCC-family-protein
MPVLSKTVEIGADAASIMAIVADFERYPEWNEGIKGLWVLARYDDGRPSQVRLDTEVQGVQSTLIQAVYYPGENQIQTALQQGDLFTKQEQLFSVVATGASSLLTVDVDVETSMPVPAPLVKQLLNNVLDRLAENLKQRAEQLNGND
>NZ_AP022615.1|WP_163672411.1|1815399_1815579_+|hypothetical-protein
MLVYAADPEWGVAAVGNHRELVAALRRRDAAAVIECTVWQFTDAANRLTETLDRTGVFG
>NZ_AP022615.1|WP_083075802.1|1813084_1814737_-|long-chain-fatty-acid--CoA-ligase
MTAQLASHLTQAQKLAQEQPYLARRQNWVNQLERHALMQPNATALRFLGRTVTWGGLRRRVTALADALSRRGVGFGDRVMILMLNRTEFVESVLAVNSLGAIAVPLNFRLTPAEIVFLVEDCEARVMITEAVLAPVATGVRDIRPSLDTVVAAGGSTGDGVLGYEDLVNEPGEAHEPRDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTGLYTNGADINGDVGFVGVPFFHIAGIGNLLTGMLLGTPTVIYPLGAFDPGQLLDVLAAERVTGIFLVPAQWQAVCAEQRARPRDLRLRVMSWGAAPAPDALLREMSATFPGTQILAAFGQTEMSPVTCMLLGEDAIRKRGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRMDGDGYVWVVDRKKDMIISGGENIYCAEVENVLAGHPGIAEVAVIGRAHEKWGEVPIAVAAVARDPLRLEDLHEFLAERLARYKHPKALEIVDALPRNPAGKVLKTELRVRYGAAYTTESRSTANDSTTRGEG
>NZ_AP022615.1|WP_083075803.1|1812062_1812869_-|ABC-transporter-permease
MTSTSTGPHLLGYLRDQLETPLTLIGGFFRMCVLTGKALFRWPFQWREFILQCWFIMRVAFLPTIMVSIPLTVLLIFTLNVLLAQFGAADLSGAGAAIGAVTQLGPLTTVLVVAGAGSTAICADLGARTIREEIDAMEVLGIDPIHRLVVPRVIAATLVATLLNGLVITVGLVGGYLFGVYLQNVSGGAYLATLTTITGLPEVVIATVKAAVFGLIAGLVGCFRGLTVRGGSKGLGTAVNETVVLCVVALYAVNVVLTTIGVRFGTGH
>NZ_AP022615.1|WP_083075805.1|1811191_1812061_-|ABC-transporter-permease
MSTAAVLRARFPRAAENLDRYGGAAGRGLDDIGRMAWFGGVCLANIPHALRNYRKETLRLIAQIGMGTGAMAVVGGTVAIVGFVTLSGSSLVAIQGFASLGNIGVEAFTGFFAALINVRIAAPVVTGISMAATVGAGATAELGAMRISEEIDALEVMGVKSISFLGTTRIMAGLVVIIPLYALAMIMSFLSPQITTTVLYGQSNGTYEHYFRTFLRPDDVFWSFVEAIIITAVVMITHCYYGYNAGGGPVGVGEAVGRSMRFSLVSVQVVVLAAALALYGVNPNFALTV
>NZ_AP022615.1|WP_083075806.1|1809878_1811186_-|MCE-family-protein
MSSPVQINPSRNPPYKVAGIAMLVVAAVILVLVYGQFRGNFTPKAKLTMVASRAGLVMDPGSKVTYNGVEIGRVATISETVRDGRPAAKFSLDVYPRYLQLIPANVNADIKATTVFGGKYVSLTTPKNPSPQRITPQTVIDARSVTTEINTLFQTITSIAEKVDPVKLNLTLSAAAQSLAGLGDRFGQSIVNANAVLDDVNPQMPQARHDIRQLAGLGDTYANASPDLFDFLNNAVTTSRTLNQQQKDLDRALLSAAGFGNTGADIFGRGGPYLARGAKDLVPTAQLLDTYSPELFCTVRNYHDIEPKAASFLGGNGYSLNSHTQALSGAGLLLNPLSFVALNALTMGLGGLAGVVGGAPNPYIYPENLPRVNARGGPGGAPGCWQTITHDLWPAPELVMDSGNSIAPYNHLDTGSPYAIEYVWGRQVGDNTINP
>NZ_AP022615.1|WP_142272778.1|1826179_1826485_+|hypothetical-protein
MNSQITDSKGTQRMQQQAALRPLVTAGAAALGASMIALTPAVSNDLAADIQHSAVTIQQRAVELTDYVANPIETWIDVFEAAGINIQSLAAQFQQYPFVLA
>NZ_AP022615.1|WP_083077655.1|1826587_1828225_+|IS1634-family-transposase
MAYVRKVRTASGAVAVQVARKDQGKVVILADLGSAHTDAELGILLDVAHQVVLDGQAALDFEVGARAQSMARVADFRERALLVAPVRPSNPAAVVAPGRTLGTSSRLLYDVLAHVYDWLGFGEVGDEVLRDLVIARIVEPTSKIDALRVLADLGATLVSYKTIDRHVRSLHAGPARDVLAAKCFAHSRDCGGLSLLLYDVTTLHWEAEKEDTLRRVGYSKDRKVDPQIVVGLLVDRTGMPLEIGCFEGNTAETTTIVPIIRGFVERHQLQGTPMVVAADAGMLSAANLKALDELELSFIVGSRMTKAPGDLESHFHWNGDVFTDGQIIDTVTPRHGNSTVNDCNKRAEPVWDPEAHPGAWRAVWAYSAKRARRDQKTLAAQETRARAIVDGSKQAKTARFVKVRGDDRAIDEASLARAQSLVGLKGYVTNVPVTVMTASEIIAKYHDLWHVEKSFRMSKSDLQARPMFNRVRDAIEAHLTVVFAALAVSHVIQSRTGISIAKAVKALRPLRSATININGATQTFPPDIPDPERRILTDLGFKPGY
>NZ_AP022615.1|WP_142272915.1|1828260_1829268_+|glycoside-hydrolase-family-43-protein
MLAQQVAANFLQYGVQYVTPYQTATNAAVNYFLGTGGGDFVPLLQSAAADAVSGNISLAFTELQSALWTAPAVQIGEPLEGIPTILNPITQNLANTSKYLTTTGLKDFGGWFALTLATRIFTPIGTGLQNVYDSLIAGDPVGALINTIDIPGELTNSIINGFPSLNGTYSSGILSDGTNGLAKIVLLTLPQGLATQVVAPNAQNIMSGGSLSYALGYLANLVTTGFPNPQTVVDNAVNLLQYLFANPGAAAAAVNVGNFAALAPAASALPGLSVGVVKAFDPAAVTNIAASLGPSLAAEVAGSLGSSLGANLAGSLATTLSVDLSKIALHILSAL
>NZ_AP022615.1|WP_083077642.1|1829435_1830482_+|hypothetical-protein
MSVGSREWDEGDAADEVLGATGVWLIPRAPTLVVEPRCRVVTPDTSRDAHAGTVLSREHQEVLEWAQARVDELIGVVEAKEHFAQWRTTLHGRAVRSCADNHMVFLGAPGTAKRTFARVIGEVLFGLGVIARPEVTVVAAEDVVVGGLSRSAVAMKSVCDDARGGVLFIEEAYRLAPQTERCSWGVDALTMLQTCMAEYRDELVVILAGYPDPMRAFLTTHHELAGRFPVTMSFASYTPDEVVAIGRRIAGKENLVVGEVVWELLRTEAARLRSIPYGHATLLDAAGNAHYAHDVVSMCRRARLRRLNRVAPNRGDLKHLVRTDPGVLHVTTTDMQRALTASHPAVMA
>NZ_AP022615.1|WP_158084950.1|1831684_1833019_+|PE-family-protein
MKRKQHSMRRDRRNAKAASRGRVVGLGTAAGALLTATMAPVVAAPSAQAGVLDMIINPIIQPVMGAASTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNASAAAFQGVHSAALASITNSLNASAAAFNAGGLNAAIEGLHASAAAALSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINTPFVALFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTATHTTGFAGGAAGLIGNGGVGGAGFSPASGAGGNGGAGGVGGLLMGNGGAGGAGGVNASNGGVGGAGGNAGILFGNGGAGGAGGASNPNGGYGGRGGAGGNSAWLVGNGGQGGSAPNNIYGSGHYDVGRPGGAGGFSGLLAGNGGNGGNGGNATPGYGYTGGKGGLGGLAGFLGQIGAAGIPGTSG
>NZ_AP022615.1|WP_083077645.1|1833093_1834389_+|hypothetical-protein
MQQLTALRPLVTAGAAALGASLIALTPAVSNDAASALQHSVAAAQQRAVELLSADTGDPGVVNPIQTWINVFQQAGANLQAIGSNMSHGGAIPLPLAQQLAANWVTYASIYVTAYKSADLGAFSYLTNVPPPINTNLATLLTNAVTLLQARDFVDAVSNLEFAFWGGPVSTIFQPMETIPTILAYMSTNFAALGNVAFNEPGLLSQSIVSMLGAFFVEGVNNSLAYALGNGIQNVYDAFAAGDLPAGVTNFLNMPGLLAGAVLNGAGLTSTGHSGLLTPQASLIGGGLLDTLAVWAPQTLASKIVVNNQVTGTILTPNILAGGSLANAFSQLASQITTGWPTPNMWVNGLINAFQYYLELFGGQGGLGGAAFAAPAGVASIAPSLAANLGGIAPSIAADLSGLAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672413.1|1834613_1835594_+|AAA-family-ATPase
MSNVNSTAAALALAEDWCQRESGTYPGTALAAERREVLEWAQARIGELIGLQSAKDRFAVWLGQHDAQHRGVVASCSEHHMVFLGAPGTAKTTFARVAAEVLFGLGTITRPEVTKVSAHDIAAGSPSHSAARMKNVCGRARGGVLFLDEAHRLAPDTEDHCGGVEAIYTLLTCMAAYRDELVVILAGHARPMQDFLAVHAGLGVQFPFTATFTSYTPNDIVAIGRHLAGRAQLVVQDPAWDLLRTEATRLRSIPHGHGTLLDVAGNAHYAHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_158084946.1|1837004_1838333_+|hypothetical-protein
MKRKQHNMRRDRRNTKANRGRVVGLGTAAGALLTATMTPVVAAPPAQAGVLDLIINPILQPMMGAASTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLNAAIEGMHASAAAALSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQIDGAINAPFLYLFGRDLIGNGINGAPIQNTSPLGQWLPVGSLHDGGFLFGDGGAGAAGTATSPAGGVGGSAGLIGNGGIGGAGYFGSISGAAGRAAFGGVGGNGGLLMGNGGAGGAGGGVSSGSFQAAAGNGGAAGLLFGNGGAGGVGANGTQHGGTGGNGGNGAWLVGNGGAGGASGVGSSPTSSTSSAGGVGGFSGLLAGNGGNGGSSWNGPEVYSNPLLGGVGGYGGLLGLNGAAGSSISG
>NZ_AP022615.1|WP_142272900.1|1838388_1839708_+|hypothetical-protein
MQQLTALRPLVAAGAAAVGASLIALTPAVSNNVAADLHRSAADIQQRAVQLLSTDDPGVVNPIQTWINVFTGAAANLQADYAMATTYGFFPVLEQELANQAFIDGTQVIPAFQNAALAGVQWYTEGPNSGVVGTISGFWGNLFLGLSQVGAGDFQNGFETIASAGIPGLASSAGLALQPLLPVLPDELESLPSAVTFLLSDAYYSFAINYWLAWPKALGWELGTDVQNAYDGFASGDLLAGVTNLLNIPGAFTGQFLNGGLWSSHGFWPGFLTPGTPSTTDTMGLLSFFTTYVSQGLANSLVYPGAPNIVEGGNFAEVVQQFLAQVSNFTPNIYGSLSGWPTPAIIVNNVVNLFHTYAGVGGLTSAATGASAANVAGLAPSLAANLSGLAPSIAADFSGIAPSLAAEIGGIAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672414.1|1839932_1841114_+|AAA-family-ATPase
MSNVNSTAAALALTEDWCRPGAYAGTALACERREVLDWAQARIDELIGLAEAKEHFTTWRTALQNNPHHRLEHGGAVTSCRENHMVFLGAPGTAKKTFARVIAEVLFGLDVITRPEVTETTAHDIVADDPSHSAARMKTVCDDARGGVLFLDEAHQLAPHTDNPSRGADVIAALQTHVAHYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPNDIIALGHRLASKENLTIEDTAWELLRAEATRLRSIPHGHGTLLDAAGNAHYTHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPPTTTSTNTHPTTPKTQQTPTPLGDRQLNHGPLSPPMRVYRSPAMTLTHSTACGYGGPQPPADIAMDH

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Crispr_ID: NZ_AP022615_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_8

1837291-1837381

Orphan

Consensus_repeat	Method
TCACCAACAGCCTCAACGCCAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_8

>merge|NZ_AP022615|8|1837291-1837381|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGCGGCGGCCTTCCAGGGTGTGCATTCGGCCGCCCTGGCCAGCATCACCAACAGCCTCACCGCCAGCGC

>NZ_AP022615|8|7|1837291-1837381|CRISPRCasFinder
TCACCAACAGCCTCAACGCCAGCGC	GGCGGCCTTCCAGGGTGTGCATTCGGCCGCCCTGGCCAGCA
TCACCAACAGCCTCACCGCCAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083075792.1\|1822527_1823583_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_163672315.1\|1841534_1841693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083075794.1\|1821089_1822379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084950.1\|1831684_1833019_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_158084913.1\|1824842_1826174_+\|PE-family-protein	unknown	unknown	gnl\|CDD\|237537
NZ_AP022615.1\|WP_163672413.1\|1834613_1835594_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_142272900.1\|1838388_1839708_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076667.1\|1848289_1848994_-\|NIPSNAP-family-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_142272915.1\|1828260_1829268_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076678.1\|1845311_1846100_-\|aldolase	unknown	unknown	gnl\|CDD\|226356
NZ_AP022615.1\|WP_163672414.1\|1839932_1841114_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083077645.1\|1833093_1834389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076681.1\|1844586_1845315_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP022615.1\|WP_083076671.1\|1847081_1848293_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_AP022615.1\|WP_083077642.1\|1829435_1830482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083077655.1\|1826587_1828225_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NZ_AP022615.1\|WP_083076688.1\|1842303_1843611_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341469
NZ_AP022615.1\|WP_083076675.1\|1846102_1847080_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176230
NZ_AP022615.1\|WP_142272778.1\|1826179_1826485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076684.1\|1843645_1844590_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083075792.1\|1822527_1823583_+\|hypothetical-protein	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	5.06023e-38
NZ_AP022615.1\|WP_158084950.1\|1831684_1833019_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000287968
NZ_AP022615.1\|WP_083076681.1\|1844586_1845315_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.84191e-73
NZ_AP022615.1\|WP_163672413.1\|1834613_1835594_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.38138e-39
NZ_AP022615.1\|WP_083076678.1\|1845311_1846100_-\|aldolase	gnl\|CDD\|226356	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism].	2.02737e-38
NZ_AP022615.1\|WP_083076671.1\|1847081_1848293_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.39801e-58
NZ_AP022615.1\|WP_083077642.1\|1829435_1830482_+\|hypothetical-protein	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	6.60673e-38
NZ_AP022615.1\|WP_083077655.1\|1826587_1828225_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	4.78707e-12
NZ_AP022615.1\|WP_083076688.1\|1842303_1843611_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341469	cd08190, HOT, Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. This family contains hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP; instead, it uses alpha-ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT enzyme is located in mitochondria, and is expressed with an N-terminal mitochondrial targeting sequence. HOT enzyme is member of the metal-containing alcohol dehydrogenase family. It typically contains an iron although other metal ions may be used.	0
NZ_AP022615.1\|WP_083076675.1\|1846102_1847080_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176230	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	7.45982e-85
NZ_AP022615.1\|WP_158084913.1\|1824842_1826174_+\|PE-family-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000330966
NZ_AP022615.1\|WP_163672414.1\|1839932_1841114_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	2.5212e-40
NZ_AP022615.1\|WP_083076684.1\|1843645_1844590_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.05264e-72

>NZ_AP022615.1|WP_163672413.1|1834613_1835594_+|AAA-family-ATPase
MSNVNSTAAALALAEDWCQRESGTYPGTALAAERREVLEWAQARIGELIGLQSAKDRFAVWLGQHDAQHRGVVASCSEHHMVFLGAPGTAKTTFARVAAEVLFGLGTITRPEVTKVSAHDIAAGSPSHSAARMKNVCGRARGGVLFLDEAHRLAPDTEDHCGGVEAIYTLLTCMAAYRDELVVILAGHARPMQDFLAVHAGLGVQFPFTATFTSYTPNDIVAIGRHLAGRAQLVVQDPAWDLLRTEATRLRSIPHGHGTLLDVAGNAHYAHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPPTGI
>NZ_AP022615.1|WP_083077645.1|1833093_1834389_+|hypothetical-protein
MQQLTALRPLVTAGAAALGASLIALTPAVSNDAASALQHSVAAAQQRAVELLSADTGDPGVVNPIQTWINVFQQAGANLQAIGSNMSHGGAIPLPLAQQLAANWVTYASIYVTAYKSADLGAFSYLTNVPPPINTNLATLLTNAVTLLQARDFVDAVSNLEFAFWGGPVSTIFQPMETIPTILAYMSTNFAALGNVAFNEPGLLSQSIVSMLGAFFVEGVNNSLAYALGNGIQNVYDAFAAGDLPAGVTNFLNMPGLLAGAVLNGAGLTSTGHSGLLTPQASLIGGGLLDTLAVWAPQTLASKIVVNNQVTGTILTPNILAGGSLANAFSQLASQITTGWPTPNMWVNGLINAFQYYLELFGGQGGLGGAAFAAPAGVASIAPSLAANLGGIAPSIAADLSGLAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_158084950.1|1831684_1833019_+|PE-family-protein
MKRKQHSMRRDRRNAKAASRGRVVGLGTAAGALLTATMAPVVAAPSAQAGVLDMIINPIIQPVMGAASTAAAAGTTAINGIGAGALAGLHTGALQGLTNSLNASAAAFQGVHSAALASITNSLNASAAAFNAGGLNAAIEGLHASAAAALSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINTPFVALFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTATHTTGFAGGAAGLIGNGGVGGAGFSPASGAGGNGGAGGVGGLLMGNGGAGGAGGVNASNGGVGGAGGNAGILFGNGGAGGAGGASNPNGGYGGRGGAGGNSAWLVGNGGQGGSAPNNIYGSGHYDVGRPGGAGGFSGLLAGNGGNGGNGGNATPGYGYTGGKGGLGGLAGFLGQIGAAGIPGTSG
>NZ_AP022615.1|WP_083077642.1|1829435_1830482_+|hypothetical-protein
MSVGSREWDEGDAADEVLGATGVWLIPRAPTLVVEPRCRVVTPDTSRDAHAGTVLSREHQEVLEWAQARVDELIGVVEAKEHFAQWRTTLHGRAVRSCADNHMVFLGAPGTAKRTFARVIGEVLFGLGVIARPEVTVVAAEDVVVGGLSRSAVAMKSVCDDARGGVLFIEEAYRLAPQTERCSWGVDALTMLQTCMAEYRDELVVILAGYPDPMRAFLTTHHELAGRFPVTMSFASYTPDEVVAIGRRIAGKENLVVGEVVWELLRTEAARLRSIPYGHATLLDAAGNAHYAHDVVSMCRRARLRRLNRVAPNRGDLKHLVRTDPGVLHVTTTDMQRALTASHPAVMA
>NZ_AP022615.1|WP_142272915.1|1828260_1829268_+|glycoside-hydrolase-family-43-protein
MLAQQVAANFLQYGVQYVTPYQTATNAAVNYFLGTGGGDFVPLLQSAAADAVSGNISLAFTELQSALWTAPAVQIGEPLEGIPTILNPITQNLANTSKYLTTTGLKDFGGWFALTLATRIFTPIGTGLQNVYDSLIAGDPVGALINTIDIPGELTNSIINGFPSLNGTYSSGILSDGTNGLAKIVLLTLPQGLATQVVAPNAQNIMSGGSLSYALGYLANLVTTGFPNPQTVVDNAVNLLQYLFANPGAAAAAVNVGNFAALAPAASALPGLSVGVVKAFDPAAVTNIAASLGPSLAAEVAGSLGSSLGANLAGSLATTLSVDLSKIALHILSAL
>NZ_AP022615.1|WP_083077655.1|1826587_1828225_+|IS1634-family-transposase
MAYVRKVRTASGAVAVQVARKDQGKVVILADLGSAHTDAELGILLDVAHQVVLDGQAALDFEVGARAQSMARVADFRERALLVAPVRPSNPAAVVAPGRTLGTSSRLLYDVLAHVYDWLGFGEVGDEVLRDLVIARIVEPTSKIDALRVLADLGATLVSYKTIDRHVRSLHAGPARDVLAAKCFAHSRDCGGLSLLLYDVTTLHWEAEKEDTLRRVGYSKDRKVDPQIVVGLLVDRTGMPLEIGCFEGNTAETTTIVPIIRGFVERHQLQGTPMVVAADAGMLSAANLKALDELELSFIVGSRMTKAPGDLESHFHWNGDVFTDGQIIDTVTPRHGNSTVNDCNKRAEPVWDPEAHPGAWRAVWAYSAKRARRDQKTLAAQETRARAIVDGSKQAKTARFVKVRGDDRAIDEASLARAQSLVGLKGYVTNVPVTVMTASEIIAKYHDLWHVEKSFRMSKSDLQARPMFNRVRDAIEAHLTVVFAALAVSHVIQSRTGISIAKAVKALRPLRSATININGATQTFPPDIPDPERRILTDLGFKPGY
>NZ_AP022615.1|WP_142272778.1|1826179_1826485_+|hypothetical-protein
MNSQITDSKGTQRMQQQAALRPLVTAGAAALGASMIALTPAVSNDLAADIQHSAVTIQQRAVELTDYVANPIETWIDVFEAAGINIQSLAAQFQQYPFVLA
>NZ_AP022615.1|WP_158084913.1|1824842_1826174_+|PE-family-protein
MKRKQHSMRRDRRSRNAMAARRGRVVGLSTAAGALLTATMTPVIAAPSAQAGVLDMIINPIIQPIMGAVGTAAAAGTTAMNGFGAGALAGLHTAALEGITNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLSTALEGLHASAAAALSGGGFSAAAANSAGNVQLNNLVYGGFSNVYNMIYTAGQSWIASPTGQQIDGVINAPFLYLFGRDLIGNGVNNFTGANTSLIGSTGLTGNLSDGGFLFGNGGAGAAGSVAHPAGWAGGTAGLFGNGGAGGAGFNATSGAGGAGGVGGPGGILMGNGGVGGVGAGGTTGFGGNGGAGGAGGFLFGDGGAGGAGGVGPSTGSGAGGIGGVGGYGAWLVGNGGVGGVGGTATGTGAGRAGGAGGLGGMLAGNGGNGGNGGPSGPSGTAKGGPGGVGGLVGILGQIGVAGTPGARG
>NZ_AP022615.1|WP_083075792.1|1822527_1823583_+|hypothetical-protein
MSVGSREWDESDAADEVLGATGVWLIPRAPTMVESRCRVVTTDASRDAHAGTVLSREHQEVLEWAQARVDELIGVVEAKERFAGWRTVLQTSQHSGAVTSCADNHMVFLGAPGTAKRTFARVIGEVLFGLGTIARPGVTEVAAEDVVVGGLSRSAVAMKSVCDDARGGVLFIEEAYRLAPQTAGHSWGVDALTMLQTCMAEYRDELVVILAGYPDPMQEFFTAHDGLAGRFPHTMSFASYTPEEVVAIGRRLAGKENLVVGEVVWELLRAEAARLRSIPYGHATLLDAAGNAHYAYDVVSMCRRARLRRLNRLAPNRGDLKHLVRTDPGVLHVNTTDMQRALTASHPAVTT
>NZ_AP022615.1|WP_083075794.1|1821089_1822379_+|hypothetical-protein
MQQLTALRPLVTAGAAALGASLIALTPAVSNDAASALQHSVAAAQQRAVELASTDYAVNPLQTWLDVFTNAAANLQTIGADWAQIPAVLGQQFAANLIQYANLYVGSYQSAANGALQFYTSTVTSHPGVPTNFWPVLAQGLADFQSGQIASGIDQVGFALLQGPISAVLQPMENTLQIPIYFTQNIANATDALLKTSNGGVIESVGAYALFGFSGTLEHSLGDSLQAAYDAFAAGDPVDGVLNLLNTPGAVANGVINGYNGSQGLLSPENGVLQSGLLSIFANLAPQNLAKAIVVPGGTNITNGGSLATAWGSFLNMAAGGWPSPNEIVNNILNLFQTYAGLPGLASAANVGGVVPAAALAGLPGLSAGVLKAFDPAAVTNIAASLGPSLAAEVAGSLGSSLGANLAGSLATTLSVDLSRVALHILSAL
>NZ_AP022615.1|WP_142272900.1|1838388_1839708_+|hypothetical-protein
MQQLTALRPLVAAGAAAVGASLIALTPAVSNNVAADLHRSAADIQQRAVQLLSTDDPGVVNPIQTWINVFTGAAANLQADYAMATTYGFFPVLEQELANQAFIDGTQVIPAFQNAALAGVQWYTEGPNSGVVGTISGFWGNLFLGLSQVGAGDFQNGFETIASAGIPGLASSAGLALQPLLPVLPDELESLPSAVTFLLSDAYYSFAINYWLAWPKALGWELGTDVQNAYDGFASGDLLAGVTNLLNIPGAFTGQFLNGGLWSSHGFWPGFLTPGTPSTTDTMGLLSFFTTYVSQGLANSLVYPGAPNIVEGGNFAEVVQQFLAQVSNFTPNIYGSLSGWPTPAIIVNNVVNLFHTYAGVGGLTSAATGASAANVAGLAPSLAANLSGLAPSIAADFSGIAPSLAAEIGGIAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672414.1|1839932_1841114_+|AAA-family-ATPase
MSNVNSTAAALALTEDWCRPGAYAGTALACERREVLDWAQARIDELIGLAEAKEHFTTWRTALQNNPHHRLEHGGAVTSCRENHMVFLGAPGTAKKTFARVIAEVLFGLDVITRPEVTETTAHDIVADDPSHSAARMKTVCDDARGGVLFLDEAHQLAPHTDNPSRGADVIAALQTHVAHYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPNDIIALGHRLASKENLTIEDTAWELLRAEATRLRSIPHGHGTLLDAAGNAHYTHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPSALHANTTDMQRALTATHPPTTTSTNTHPTTPKTQQTPTPLGDRQLNHGPLSPPMRVYRSPAMTLTHSTACGYGGPQPPADIAMDH
>NZ_AP022615.1|WP_163672315.1|1841534_1841693_+|hypothetical-protein
MADTARQYEALWGRVLLLGGTKSPDYLGVTLSELAKVLPHANRVTLKRFCDA
>NZ_AP022615.1|WP_083076688.1|1842303_1843611_-|iron-containing-alcohol-dehydrogenase
MACCDLPIAAEDCDRAFTVDASRVTFGRGCLAEVGERASALGLRRVALFSDAGVAGLPIFTTTRDSLVAAGLDVATYTDVHVEPTDASFLDAARFARELNPDGYVSLGGGSVIDTCKAANLCATHPAELLTYVNAPIGEGKPVPGPLKPHIACPTTAGTGSEVTGIAIFDLLSLKAKTGIASHALRPTEALVDPDCTASLPPEVVASAGLDVLSHALESYTARPYVRRRAPERPSLRPMSQGANPWSDLGCREALRLLGRFLERAVHDASDDEAREQMMWAATLAGIAFGNAGVHAPHGMAYAVAGLVRDFRPSGYPADEPLVPHGMAVILNAPASFRFTAEASPQRHLEGARLLGADTRGAGATDAGEVLAGELVRIMRAVRMPNGLGGVGYTEDDVAALTAGAYPQQRLLQNAPREMSKPVLADLFRRAMRYW
>NZ_AP022615.1|WP_083076684.1|1843645_1844590_-|alpha/beta-hydrolase
MNTTGGLDGFDRLDPALRAVATTRTDFSPASIRLIREPFNQRRREAAEQVDAQGIRIVEDNAAAESGDVPVRVYHGGEFPAPAVVYCHAGGFALGNLDTDHRQCVELARRARCTVVSVDYRLAPEHPYPAALDDAAAALRWTAARAADLGIDPARLAVAGSSAGATLAACLAHGAADGSLPAVAFQLLHQPVLDDRETASKAEFCTSPAFDSEAADLMWRHYLGPAPGSVAAVPARRDRLGGLPHALITCAEIDPFRDEAVDYALQLLRAGVSAELHVFPGTCHGFDTLLPDWPVSQRLFALQGEALRRAWDGA
>NZ_AP022615.1|WP_083076681.1|1844586_1845315_-|SDR-family-oxidoreductase
MSQRVALVTGAAGGQGWAIAKRLRAAGYSVAACDRRAGELAAAVGELGDDGVIAVELDVTSPAHWDAAVERVVDRFGVLSALVNNAGVLHRASLADETAEGFERAWRVNCLGAFLGMRATLARLREAERASIVNICSTGAIRPFPRHCAYGSSKWALRGLTQTAAAELAPSGIRVNAVFPGPIATPMLDEATQTRLAAASMVGRIGRPREIADAVTFLVSDEASFITGSELVVDGGQCLQIR
>NZ_AP022615.1|WP_083076678.1|1845311_1846100_-|aldolase
MTDSNLRQALNRATPAWGGWITGPTLLGPEEFARAGYDYVGFDAQHGYLDDADIAGILRRLEHVPLGTLVRLPNADAAPIGRVADAGADAVAVAMIESADQAAAAVAATRYPPAGIRSFGPLRPGLGLDPAALESRVSVFAMIETAAALWDIAAICGVDGLAGIYIGPADLAISMGVDAVGATQHPAVLDAITRIHRVATNAGLVTGIHAGNGKTGYAMARLGFRMITLAAEAQALRRGAAEHLREATSDGASDDETGAPLS
>NZ_AP022615.1|WP_083076675.1|1846102_1847080_-|zinc-binding-dehydrogenase
MWSYRIVAPYLFERASIPDNTPEHLADGQVLLRFSSAGVCGSDLPAFRGARGRLPGDDGRSAAGKDGFPIHEVAGEVIASRHPEHRPGDRVVGWASGFDGLMERVISDGDGLAPYDPALSPAEAIGLQPLACVLYACEQLPDLAGRHVAIIGQGSIGLLFSYVAKAAGARRVTGVDPLDRSGCATAFGVDDAVRATSDRWVSHLAPADRADVVIEAVGHQVATLGHAIEAAAPGGTVFYFGVADDDAYPISMRLMLRNNLTLKSGVTLDRRRVLELAGKFAAEHPGLLGAYLTHAFGVHDVRDVQGAFELACRPVPERVKIAIAE
>NZ_AP022615.1|WP_083076671.1|1847081_1848293_-|cytochrome-P450
MSFSYDPFDATVMANPLPYYRILRDHHPVYYMPRWDTFALSRFDDVWRVLEVNDGTFVASEGTLPAASVLARHNTGPVDDPPLHPLPFHAVFDAGLYGEIRRAHSAPLRPRAVAGLEARIRALANERLDLLLPRGSFDLTQDYGGIVVASVVCELLGIPTDLAPQVLAAVNAGSLAEPGVGVDTAEARPNYLEFLVPAVRRRRAEPSGAALGVVDGLLGYRLPDGSALSDVEVATQMLCIFIGGTETVPKIVAHGLWELSRRPDQLAEVRADPGNTVPIAREEMIRFCAPAQWFARTARKPFTIHDATIRPGQRIITLLASANRDEREYPEPDEFVWNRPIRRSLAFGRGQHFCIGYHLARLEIDVLLAEWLRRVPDYAIRGEAATRLPSSFQWGWNTIPVEV
>NZ_AP022615.1|WP_083076667.1|1848289_1848994_-|NIPSNAP-family-protein
MKKYYGHTLLYLHETISLGSGRSDHFTEAFTGSYQPMMDELGARLFAIWETTPYNGHWPQVTIVWEIDGFADYARIGAARAPGGSHHAAAGKWSAFLADIGASGEGRIMYPGPSNKTLAQLREANVTAPLVIQEIMRTKPGRQDDYIRELERLYVPWSERTGKRWLGSFTTTFRYNEVIHYWALDGGWECFANHYPSWKESPPAEIVTWMSVAPALRDGWEDSILQALPPSPLQ

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Crispr_ID: NZ_AP022615_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_9

2118512-2118588

Orphan

Consensus_repeat	Method
CCCGGCTGGTAGCCACCCGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_9

>merge|NZ_AP022615|9|2118512-2118588|CRISPRCasFinder
CCCGGCGGGACGCCGCCCGGCTGGTAGCCACCCGGTGGGGGTGCTTGCGGGCCGCCCGGCGGGACGCCACCCGGCTG

>NZ_AP022615|9|8|2118512-2118588|CRISPRCasFinder
CCCGGCGGGACGCCGCCCGGCTG	GTAGCCACCCGGTGGGGGTGCTTGCGGGCCG
CCCGGCGGGACGCCACCCGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083075440.1\|2127990_2128488_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_AP022615.1\|WP_142272527.1\|2109175_2109814_-\|TnsA-like-heteromeric-transposase-endonuclease-subunit	unknown	unknown	gnl\|CDD\|380186
NZ_AP022615.1\|WP_083073077.1\|2107028_2109179_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_AP022615.1\|WP_083073079.1\|2113712_2114171_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_AP022615.1\|WP_083073081.1\|2114490_2115024_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NZ_AP022615.1\|WP_083073085.1\|2116193_2116835_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_AP022615.1\|WP_083073078.1\|2110094_2113181_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|236093
NZ_AP022615.1\|WP_083075441.1\|2127175_2127925_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_AP022615.1\|WP_083075447.1\|2121667_2122204_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NZ_AP022615.1\|WP_083073080.1\|2114193_2114448_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_AP022615.1\|WP_142272754.1\|2123521_2124415_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_AP022615.1\|WP_083075438.1\|2128536_2129208_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181298
NZ_AP022615.1\|WP_083073086.1\|2116831_2118484_-\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|227937
NZ_AP022615.1\|WP_083075449.1\|2121028_2121454_-\|DUF5318-domain-containing-protein	unknown	unknown	gnl\|CDD\|379953
NZ_AP022615.1\|WP_142272520.1\|2115537_2115834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083075443.1\|2124594_2125335_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_AP022615.1\|WP_083073082.1\|2115121_2115412_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_AP022615.1\|WP_083075459.1\|2125373_2127179_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_AP022615.1\|WP_083075446.1\|2122272_2123376_+\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491
NZ_AP022615.1\|WP_083075458.1\|2129240_2132126_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083075440.1\|2127990_2128488_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.37685e-19
NZ_AP022615.1\|WP_142272527.1\|2109175_2109814_-\|TnsA-like-heteromeric-transposase-endonuclease-subunit	gnl\|CDD\|380186	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit. The transposase of transposon Tn7 contains multiple subunit. Members of this family are largely restricted to the Actinobacteria, resemble the endonuclease subunit TsnA of the multimeric transposase of Tn7 and its relatives, and occur in genomic neighborhoods that suggest a similar role in transposition.	2.16144e-88
NZ_AP022615.1\|WP_083073077.1\|2107028_2109179_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.77814e-08
NZ_AP022615.1\|WP_083073079.1\|2113712_2114171_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	1.07036e-54
NZ_AP022615.1\|WP_083073081.1\|2114490_2115024_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	1.28822e-102
NZ_AP022615.1\|WP_083073085.1\|2116193_2116835_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	2.04985e-70
NZ_AP022615.1\|WP_083075449.1\|2121028_2121454_-\|DUF5318-domain-containing-protein	gnl\|CDD\|379953	pfam17249, DUF5318, Family of unknown function (DUF5318). This family of unknown function is mostly found in Actinobacteria.	1.04967e-73
NZ_AP022615.1\|WP_083075441.1\|2127175_2127925_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	8.4584e-130
NZ_AP022615.1\|WP_083075447.1\|2121667_2122204_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	4.62907e-21
NZ_AP022615.1\|WP_083073080.1\|2114193_2114448_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	6.45943e-32
NZ_AP022615.1\|WP_142272754.1\|2123521_2124415_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.72487e-21
NZ_AP022615.1\|WP_083075438.1\|2128536_2129208_+\|SDR-family-oxidoreductase	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.17322e-115
NZ_AP022615.1\|WP_083073086.1\|2116831_2118484_-\|DUF2029-domain-containing-protein	gnl\|CDD\|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	2.13222e-172
NZ_AP022615.1\|WP_083073078.1\|2110094_2113181_-\|replicative-DNA-helicase	gnl\|CDD\|236093	PRK07773, PRK07773, replicative DNA helicase; Validated.	0
NZ_AP022615.1\|WP_083075458.1\|2129240_2132126_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_AP022615.1\|WP_083075443.1\|2124594_2125335_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.12859e-29
NZ_AP022615.1\|WP_083073082.1\|2115121_2115412_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	8.76894e-42
NZ_AP022615.1\|WP_083075459.1\|2125373_2127179_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.21811e-68
NZ_AP022615.1\|WP_083075446.1\|2122272_2123376_+\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0

>NZ_AP022615.1|WP_083073086.1|2116831_2118484_-|DUF2029-domain-containing-protein
MTGARHQSAAISPLPLAADLRNADNRDCPSRTDFLGAALADVAGGPVGRHALIGRSRVMTPVRVMFLIALVFLALGWSTKAACLQSSGTGTGDQRVANWENQRAYYELCYSDTVPLYGAELLNQGKFPYKSSWIETDSNGAPQTRYDGRPAVRYMEYPVLTGVYQYVSMAVAKTYTALSKLAPLPVVAEVVMFFDVAAFGLALAWLATVWATAGLSGRRIWDAALVAASPLVIFQIFTNFDALATAFAMGGLLAWARRKPVLAGVLIGLGAAAKLYPLLFLGPMLVLGIRTGRLRALGRTAGTAAATWLLVNLPVLVLFPRGWSEFFRLNARRGDDIDSLYNVVKSSTGWRGFDPKLGFWEPPTMLNAVVAVLFALCCAAIAYVVLTAPRRPRVAQLAFLVVAAFLLTGKVWSPQFSLWLVPLAVLALPHRRILLAWMTIDALVWVPRMYYLYGNPDRGLPGQFFTTTVLVRDAAVVALCALVIRQIYRPDEDLVRWNGRVDDPAGGPFDRAPDAPPGWLPVWLRPPGLRRSAACASETGAEAAIGVTQA
>NZ_AP022615.1|WP_083073085.1|2116193_2116835_-|DJ-1/PfpI-family-protein
MTLVAIPLFPRFTALDAVGPYEVLQRIPSFDVVFVGHRRGEVRTESGMLGVTCDAAFDEVAAPDVVVVPGGIGTRRLIHDDAVRAWLQSVHPTTTFTTSVCTGALLLAAAGLLDGLTATTHWRAADLLNELGARYVPERVVEHLPQRLITPAGVSSGIDMALRLVELLVDREAAQAAQLLIEYDPQPPFDTGALAKADEATVARANEYLQSRQ
>NZ_AP022615.1|WP_142272520.1|2115537_2115834_-|hypothetical-protein
MFEIELQFVPGGNDPSQFEALLDAVADELAERGVDADYTARLADLAVTWTIDVPDASEESLIGALSALRRALDATGRISTGKWAARHDVVSTRHMVLA
>NZ_AP022615.1|WP_083073082.1|2115121_2115412_-|30S-ribosomal-protein-S6
MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGTVEKVDIWGKRRLAYEIAKHAEGIYVVIDLKAAPATVSELDRQLSLNESVLRTKVMRTEKH
>NZ_AP022615.1|WP_083073081.1|2114490_2115024_-|single-stranded-DNA-binding-protein
MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVFEVEVDEIGPSLRYATAKVNKASRSGGGGGTGGGGGFGGGGGGGSRPAPAQASGGSGDDPWGSAPASGSFGGGDEEPPF
>NZ_AP022615.1|WP_083073080.1|2114193_2114448_-|30S-ribosomal-protein-S18
MAKSNKRRPAPEKPVKARKCVFCAKKGQAIDYKDTTLLRTYISERGKIRARRVTGNCVQHQRDIATAVKNAREVALLPFTSSTR
>NZ_AP022615.1|WP_083073079.1|2113712_2114171_-|50S-ribosomal-protein-L9
MKLILTSDVDHLGTVGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRSRETKVVRDLQHANEIKSAIEALGPVSLPVKTAVDSGKLFGSVSAGDIVAAIKKAGGPNLDKRIVRLPKAHIKAVGAHRVSVHLHPEIDVEVAVDVVAES
>NZ_AP022615.1|WP_083073078.1|2110094_2113181_-|replicative-DNA-helicase
MAVVDDLAPGMDSSPPAEEYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEIVDRAQAEIYDVADRRLSEDFVPLEDLLQPTMDEIDAIASSGGVSRGVPTGFTELDEVTNGLHPGQMIIVAARPGVGKALALDTPLATPAGWTTMGDVAVGDELLGADGRPTRVVAATDVMLGRPCYEVEFSDGTVIVADAAHQWPTTRGVRTSAQLRCGWDTIAAAGSATRYGAHMTTTALLAPVLQIEAVRRVDSVPVRCVQVDNAAHLYLAGRGMVPTHNSTLGLDFMRSCSIKHRLASVIFSLEMSKSEIVMRLLSAEAKIKLADMRSGRMSDDDWTRLARRMSEISEAPLYIDDSPNLTMMEIRAKARRLRQKADLRLVVVDYMQLMTSGKKHESRQVEVSEFSRNLKLLAKELEVPVVAISQLNRGPEQRTDKRPMLADLRESGCLTAATRILRADTGAEITFGELMRTGERPLVWSLDERLRMVARPMTNVFPSGRKEVFRLRLASGREVEATGNHPFMKLDGWTPLEELKVGDRIAAPRRVPEPVDTQRMDDSEVILLAHMIGDGSCVKNQPIRYASVDEANLVAVTVSAAHFGVTGVRDEYPAARVTTLRLPSPYHLTHGRRNPIAAWLDELGLFRKRSYEKFVPQAVCRAPNDQVALFLRHLWATDGSVRWDDKVGQGRIYYASTSRRLIDDVAQLLLRVGVFGRIKRVQKLGYRDSWHLYIYGAENQTRFLCHVGVHGAKALAAQEVLSHLEGVVRNTNLDTVPRDVWVRVRDVLIDKHITHREFASAMGIQFCGSTLWKRSPSRARLHRVAAMLDDADIHALATSHVFWDTVVEIVSLGEQDVYDGTVSGTHNFVANGIAVHNSLEQDSDMVILLHRPDAFERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANMAR
>NZ_AP022615.1|WP_142272527.1|2109175_2109814_-|TnsA-like-heteromeric-transposase-endonuclease-subunit
MDELANAAPWRTFRWHRGQKHYSGTYWSSTVGGHVIYESRLELARLIFADFDMSVRHIVAQPFLLRASVDRNPRKHIPDYLLITDTGPVVVDVKPARRLSNPNVAFTFEWTRELVEARGWSYEVATEPVAVELENVRFLAGYRRDWLFRSELLAQLREKNLDGSPLADALRCMPGEPIHHVKSAVLHLVWRQELLIDLSVPLSGRTELRRPA
>NZ_AP022615.1|WP_083073077.1|2107028_2109179_-|DDE-type-integrase/transposase/recombinase
MTSAGVRIGVGARLVHDGELVEIVEIHAGQTGMDVVLKGTSKQALIRARLNELLMSNGTRVITERDGPSGDDDFEPAGVILAQLGDAERSEMIERAAHVREVLTGFRSGSEELALPGEPRREYQADVPLSRRYASKAGELGAGVRSIERWVQQFQKNGEAGLASTRGRRTAGLGANVDPRWTETAVEVMVEHTDQSRPSQTMVITRANARVVARFGEGVVQVPSRATAFRVLADLENRYPTFRLSTKRNRDIAERPDGVYGKLCPTRPGEYLLMDTTRLDVFALDPSTLRWVQAELTIGMDWYTRCVIGIRVTPVSTKSVDAASVLYQAYRPRPAGKDWPAQTVRPEHGVPRSVLIDVDAIEGPVVGAAGPAMVPETIVIDHGKIYVSEHLTSVCQRMGISIQPARLRTGRDKGPVERFFRTIREDLLQALPGYKGPDVHSRGLDPESEAFFYLDELEAIIREWVAVVYHRRPHDSLIDPHVPGLRMSPAQMFEHGVARAGYIEVPRDPGLGYEFLKAEFRKVQHYGVDLGGRRYNGAALNGYRNMTSPYKGKAKGRWPIHYDPDDITRAYFRDPETREWHTLMWEHAPSIEMPLSEDALQFARKLAASKYTYPDDRLAVADLLERWNLGLGSTLAERRMALRLSREDTLIGQSAAQDEVATLPSVARVLATADPRGHEDAEKTIDEADPETGDDDAEDELDDCANNFYADALEDA
>NZ_AP022615.1|WP_083075449.1|2121028_2121454_-|DUF5318-domain-containing-protein
MRLQRQMVDYALRRRSLLAEVYSGRTGVSEVCDANPYLLRAAKFHGKQSQVMCPICRKEQLTLVSWVFGDHLGAVSGSARTAEELVMLATRYEEFAVHVVEVCRTCSWNHLVKSYVMGAARPPKGTRGTRTARNGARTAIE
>NZ_AP022615.1|WP_083075447.1|2121667_2122204_+|helix-turn-helix-transcriptional-regulator
MLELAILGLLIESPMHGYELRKRLTGLLGAFRAFSYGSLYPALRRMQAEGLIAENAAPAGTPVRRARRVYQLTDAGRRRFGELVADTGPHNYTDDGFGVHLAFFNRTPAEARMRILEGRRRQVEERREGLREAVARASSSFDRYTRQLHQLGLESSEREVKWLNELIAAERAMPGLSE
>NZ_AP022615.1|WP_083075446.1|2122272_2123376_+|inositol-3-phosphate-synthase
MSDHKPLGAPQASTEVRVAIVGVGNCASSLVQGVEYYQNADETSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKIADVAPTNVVVQRGPTLDGIGKYYADTIELSDAEPVDVVQVLKEAEVDVLVSYLPVGSDEADKFYAQCAIDAGVAFVNALPVFIASDPVWAKKFADAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVQLDRTMQLNVGGNMDFLNMLERERLESKKISKTQAVTSNLQREFKTKDVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRGIGGPVVPASAYLMKSPPKQLPDDVARTQLEEFIVG
>NZ_AP022615.1|WP_142272754.1|2123521_2124415_+|alpha/beta-fold-hydrolase
MSEDGLAELSEFSLLAENAEQAGVAGPLPDVERVDVDRISALRFGARPPRIVFLHGGGQNAHTWDTVIVGVGEPALAVDLPGHGHSAWREDGDYSPRHNADALVPALRELAPTADLVVGMSLGGLTAIRLAAVAPDLVPELVLIDVTPSALQRHAELTAEQQGTVALMHGEREFPSFQAMLDLTVAAAPHREVKALRRGVFHNSRRLDNGSWTWRYDAIRAVPDFGGLWDDVDALAAPITLIRGGSSGFVTDEDAAELRRRATNFRTAHVVENAGHSVQSDQPRVLIELLRGVLDAR
>NZ_AP022615.1|WP_083075443.1|2124594_2125335_+|GntR-family-transcriptional-regulator
MPKKYGVKEKDQVVAHILNLVLTGKLRSGDRVDRNEIAVGLGVSRVPIQEALVQLEHDGIVSTRYHRGAFVERFDEATVLEHHELDGLLNGIASARAATNPTPRILGQVDALMRSLRSAKDSRVFSEIAAEYRHTINDEYAGPRLHATIRASQNLIPRVFWMTYQCSRDDMLPFYEDETSAIHRHDPEAARAACVGRSYLMAQTMLAELYRRRVFSAPDDIGRVVAGSPRVLAGVDVAPGEPSIAL
>NZ_AP022615.1|WP_083075459.1|2125373_2127179_+|ABC-transporter-permease-subunit
MSSRPDRRTKRRKLVALAMTTLMACGLAMPAPAAADWNQCAPAGLESARVLPKDLTETTTTEPDDRDTTAGVEPLGSVDVGALGLGTPGVLTVGTLSDAPPDVCINPTGEFSGFDNQLLRAVAGKLGLRISFVSTDFSALLAQVASRRFDVGSASVKATDERRRTVAFTNGYDFGYYSLVVPPGSPIHKFSDLAAGQRIGVVQGTVEESYVVDTLHLQPVKYPGFATLYASLKTGQIDAWVAPGTLASTLLRPGDPAVIVANSFSRGNFVAYAVAQGNRPLVDALNSGLDAVIADGTWADLYSRWVPRTLPPGWKPGSRAAPAPKLPDFAAIAASHHREPVGPAAPKSTLAQLRDSFFDWDMYRQAIPTLFTTGLPNTLILTSSAIVIGLALGMVLAIAGISHSRWLRWPARVYTDIFRGLPEVVIILIIGMGVGPLVGGLTNKNPYPLGIAALGLMAAAYIGEILRAGIQSVDPGQLEASRALGFSYAAAMRLVVVPQGIRRVLPALVNQFIGLLKASALVYFLGLVAQQRELFQVGRDLNAQSGSLSPLVAAGLFYLILTVPLTHLVNYIDARLRRGRRATEPEEQADMLASTFGQEVT
>NZ_AP022615.1|WP_083075441.1|2127175_2127925_+|amino-acid-ABC-transporter-ATP-binding-protein
MTADTAARAPVSLAAKGIHQTLGGTAVLRGVDIDAPAGRTVAVIGPSGSGKSTLLRTLNRLHEPDSGDILLDGRSVLRDDPDRLRQRIGMVFQHFNLFPHLSVLKNVALAPRKFRRLSADAARDLALTQLDRVGLKHKADARPGTLSGGQQQRVAIARALAMAPQVMFFDEATSALDPEMVKGILQLIADLGAGGMTMVVVTHEMGFARSASDTVVFMDHGRVVESGPPEQIFEAAETERLRRFLSQVL
>NZ_AP022615.1|WP_083075440.1|2127990_2128488_+|MarR-family-transcriptional-regulator
MADSESTAADVAELAEGLHRALSKLFAILRRGDPSGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPRGRAVHGESLANRRAALAAMLSQLPEADLNTLTKALAPLERLASGESGPAGEPAARKQA
>NZ_AP022615.1|WP_083075438.1|2128536_2129208_+|SDR-family-oxidoreductase
MPTALITGASGGIGSAIATALSATHTLLLAGRPSDRLDAVAERLGATTFPLDLTDTDDIEAACEIVDELDVLVHNAGVSIPGHVAESNVDEWRATFAVNVFGTVELTLALLPALRRARGRVVFINSGAGRRVSPGMASYSASKFALRAFADSLRDDEPDLRVTTIYPGRTDTDMQRELVAFEGGHYDPANFLRPETVAAAVANAVATPPDGHLHEVVLRPGRP
>NZ_AP022615.1|WP_083075458.1|2129240_2132126_-|leucine--tRNA-ligase
MTESPTAGAPEPESDAPPYRYTAALAARIESGWQDSWAKLGTFNVPNPVGDLAPTDGTPVPDDKLFVQDMFPYPSGEGLHVGHPLGYIATDVYARYFRMTGHNVLHALGFDSFGLPAEQYAVQTGTHPRTRTEANIVNFRRQLGRLGLGHDGRRSFSTTDVEFYKWTQWIFLQIYNAWFDTAANKARPVAELIAEFDSGARRLDDGRDWATLSAGEQADVIDGHRLVYRADSMVNWCPGLGTVLANEEVTADGRSDRGNFPVFRKRLRQWMMRITAYADRLLDDLDLLDWPEQVKTMQRNWIGRSTGAEALFSATKTNGDPTDIEVFTTRPDTLFGATYLVLAPEHDLVDELVAAAWPDGVDPSWTYGAATPVAAVAAYRRAIAAKSDLERQESREKTGVFLGNHAANPANGKPVPIFIADYVLAGYGTGAIMAVPGHDQRDWDFAREFRLPVVEVIAGGDISQAAHTGDGVLVNSGYLDGMDVAAAKEAITARLESEGRGRARIEFKLRDWLFARQRYWGEPFPIVYDGDGRPNALDEAALPVELPDVPDYSPVLFDPDDADSEPSPPLEKASEWVHVELDLGDGLKPYTRDTNVMPQWAGSSWYELRYTDPHNSERFCAKENEAYWMGPRPAEHGPTDPGGVDLYVGGAEHAVLHLLYSRFWHKVLYDLGHVSSREPYRRLVNQGYIQAFAYTDARGSYVPADDVIERDGRFVYHGPDGETEVFQEFGKIGKSLKNSISPDEICDEYGADTLRVYEMSMGPLEASRPWATKDVVGAHRFLQRVWRLVIDEQTGDTRVVDGQQLDTGTLRALHRTIAGVSEDYAALRNNTAAAKLIEYTNHLTKEHRDSMPRAAVEPLVLMVAPLAPHLAEELWLRLGHTASLAHGPFPEADPAYLVDDTVEYPVQVNGKVRGRVVVAADADADTLKAAAIADDKVRAFLAGATPRKVIVVPGRLVNLVL

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Crispr_ID: NZ_AP022615_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_10

2379464-2379751

Orphan

Consensus_repeat	Method
CCTGATCGGCAACGGCGGCAACGG	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP022615_10

>merge|NZ_AP022615|10|2379464-2379751|PILER-CR
CCTGATCGGCAACGGCGTCAACAACTTCACCGGGCCCAACACCTCACTGCTCGGCCAAACCAACCTCTTCGGCAACCTCAGCGACGGCGGATTCCTCTTCGGCAACGGCGGAACCGGCGCGGCCGGAACCGCCACTAATCCTGTCGGTCTGGTCGGTGGGGCCGCCGGATTGTTCGGCAACGGCGGCAACGGCGGTGCCACGTTTAACGGCAGCAGTTTGGCGGGCGGCTCCCTCACTGGCGCGGCGGGCGGTCCCGGCGGGATCCTGATGGGCAACGGCGGCACCGG

>NZ_AP022615|10|2|2379464-2379751|PILER-CR
CCTGATCGGCAACGGCGTCAACAA	CTTCACCGGGCCCAACACCTCACTGCTCGGCCAAACCAACCTCTTCGGCAACCTCAGCGACGGCGGATT
CCTCTTCGGCAACGGCGGAACCGG	CGCGGCCGGAACCGCCACTAATCCTGTCGGTCTGGTCGGTGGGGCCGCCGG
ATTGTTCGGCAACGGCGGCAACGG	CGGTGCCACGTTTAACGGCAGCAGTTTGGCGGGCGGCTCCCTCACTGGCGCGGCGGGCGGTCCCGGCGGGAT
CCTGATGGGCAACGGCGGCACCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083077470.1\|2390845_2392186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076196.1\|2377059_2377668_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_AP022615.1\|WP_083076192.1\|2375163_2376204_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|270703
NZ_AP022615.1\|WP_163672433.1\|2387117_2388140_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083076190.1\|2374394_2375162_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_AP022615.1\|WP_142272814.1\|2369566_2371447_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NZ_AP022615.1\|WP_163672431.1\|2384148_2385492_+\|PE-family-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076198.1\|2381653_2382736_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_083077467.1\|2394662_2395007_-\|DUF1049-domain-containing-protein	unknown	unknown	gnl\|CDD\|227703
NZ_AP022615.1\|WP_158084942.1\|2392285_2393338_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|188437
NZ_AP022615.1\|WP_158084921.1\|2380254_2381457_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_158084943.1\|2389430_2390771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083077468.1\|2393466_2394513_+\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|225714
NZ_AP022615.1\|WP_083076180.1\|2368858_2369335_-\|lipoprotein-LpqH	unknown	unknown	gnl\|CDD\|368465
NZ_AP022615.1\|WP_083076186.1\|2372507_2373131_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_AP022615.1\|WP_083074232.1\|2385565_2386900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083076184.1\|2371533_2372508_-\|NADPH:quinone-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|176203
NZ_AP022615.1\|WP_083076188.1\|2373111_2374395_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173844
NZ_AP022615.1\|WP_083076178.1\|2367326_2368862_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_AP022615.1\|WP_083076194.1\|2376268_2376931_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083076196.1\|2377059_2377668_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	4.9055e-39
NZ_AP022615.1\|WP_083076192.1\|2375163_2376204_-\|phosphotransferase-family-protein	gnl\|CDD\|270703	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins. This subfamily is composed of the N-terminal domains of vertebrate ACAD10 and ACAD11, and similar uncharacterized bacterial and eukaryotic proteins. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 are both significantly expressed in human brain tissues. They contain a long N-terminal domain with similarity to phosphotransferases with a Protein Kinase fold, which is absent in other ACADs. They may exhibit multiple functions in acyl-CoA oxidation pathways. ACAD11 utilizes substrates with carbon chain lengths of 20 to 26, with optimal activity towards C22CoA. ACAD10 may be associated with an increased risk in type II diabetes. The ACAD10/11-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	2.19072e-79
NZ_AP022615.1\|WP_163672433.1\|2387117_2388140_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	3.69865e-39
NZ_AP022615.1\|WP_083076190.1\|2374394_2375162_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.09354e-60
NZ_AP022615.1\|WP_142272814.1\|2369566_2371447_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_AP022615.1\|WP_083076198.1\|2381653_2382736_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	7.36401e-39
NZ_AP022615.1\|WP_083077467.1\|2394662_2395007_-\|DUF1049-domain-containing-protein	gnl\|CDD\|227703	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown].	3.76075e-30
NZ_AP022615.1\|WP_158084942.1\|2392285_2393338_+\|AAA-family-ATPase	gnl\|CDD\|188437	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking].	1.55067e-43
NZ_AP022615.1\|WP_083077468.1\|2393466_2394513_+\|phosphotransferase-family-protein	gnl\|CDD\|225714	COG3173, COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only].	8.70197e-78
NZ_AP022615.1\|WP_083076180.1\|2368858_2369335_-\|lipoprotein-LpqH	gnl\|CDD\|368465	pfam05481, Myco_19_kDa, Mycobacterium 19 kDa lipoprotein antigen. Most of the antigens of Mycobacterium leprae and M. tuberculosis that have been identified are members of stress protein families, which are highly conserved throughout many diverse species. Of the M. leprae and M. tuberculosis antigens identified by monoclonal antibodies, all except the 18-kDa M. leprae antigen and the 19-kDa M. tuberculosis antigen are strongly cross-reactive between these two species and are coded within very similar genes.	1.13678e-30
NZ_AP022615.1\|WP_083076186.1\|2372507_2373131_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.48216e-08
NZ_AP022615.1\|WP_083076184.1\|2371533_2372508_-\|NADPH:quinone-oxidoreductase-family-protein	gnl\|CDD\|176203	cd08241, QOR1, Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	8.20207e-140
NZ_AP022615.1\|WP_083076188.1\|2373111_2374395_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	8.9832e-106
NZ_AP022615.1\|WP_083076178.1\|2367326_2368862_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.32095e-56
NZ_AP022615.1\|WP_083076194.1\|2376268_2376931_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.02931e-15

>NZ_AP022615.1|WP_083076196.1|2377059_2377668_+|histidine-phosphatase-family-protein
MQVLLVRHALPLRSQHGEGSDPDLSEEGVAQVERLPGALARFPVSRVVSSPQRRAIQTAEPVAAAFELAVEVDDRFAEYDRDLPVYIPVEQIREENPREWARLAQGQLPSAVDEHAFRARVRAAVEDLIAAADPEDTVAVFSHGGVINLLLHEILGTARLLSFPVDYASVTRLLYSRSGQATVAGVNAVEHVWDLLPRNQRW
>NZ_AP022615.1|WP_083076194.1|2376268_2376931_-|class-I-SAM-dependent-methyltransferase
MNQPNMDWDASYQREAPPPWSIGQPQPELAALIEQGKVRSDVLDSGCGHAALSLALAARGYTVVGLDASATAIEAAAASAAAQGLTTATFATADVTNFRGYDGRFATILDSGLFHALPPEKRHDYLESIFLAAAPGAALYILAFAAGALGNEGDRPGPRGFTETELHEAVSSLWRVDDLRPAKVYGNADAVADSPLANAEYDDEGHFIVPGFLLSAHKPA
>NZ_AP022615.1|WP_083076192.1|2375163_2376204_-|phosphotransferase-family-protein
MTTAGETQLDQGVLGRWLDANGAPGSGEEPVLEQLKGGSQNTLYLIARGSERMVLRMPGARADAARIDGLLREIRLVRALSGTDVPHAALIAADDTGTVLGMPFYVMRAIDGWSPMDGGWQAPFNTDLDARRELAFQLVEGAAKLGRVDWRAQGLDGFGRPDGFHDRQVDRWLSFLDAYKVRDLPGLDEASDWLRRNRPAHYKPGIMHGDYQFANVMFAHGGPARLAAIVDWEMTTVGDPLLDLAWALLGYDGENPRDDGFYLDMRGMPTRSELLEHYEKISGLSTENIDYYLVLANWKLGIVLEKTYATGVRTGKVDPKIKDAFGAMIPQLIATAAELARSSKGN
>NZ_AP022615.1|WP_083076190.1|2374394_2375162_-|SDR-family-oxidoreductase
MGYADELFDLTDRVILITGGSRGLGREMAFAAAHCGADLVIASRNMDNCVTTAKEIETETSRSAMPYQVHVGRWDQLDGLVDATYERFGKVDTLINNAGMSPLYDKLTDVTEKLFDAVVNLNLKGPFRLSALVGERMVVAGRGSIINVSSTGSLRPNGGIIPYAAAKAGLNAMTEGLAQAFGPTVRVNTLMAGPYLTDVSKAWNLDPDAGGNNFSHLSLQRAGDPREIVGAALFLASDASSFTTGSILRADGGIP
>NZ_AP022615.1|WP_083076188.1|2373111_2374395_-|acyl-CoA-dehydrogenase-family-protein
MSWDFSTEPEFEKKLDWIREFVREEVEPLEVLFPGCEFLPLNDERRRIVDPLKQQVRDNGLWAPHLGPELGGQGFGAVKLTLINEILGRSPWAPIAFGTQAPDTGNAEIIARFGTQDQKDRYLAGLLSGEIFSCFSMTEPQGGADPRVFTTRAVRDGDDWVITGRKYFSSNATVASFFIVVAITDPDVPVHRGASTFLIPAGTPGLIVAATHHLVGADPHEPGHSLVHYDDVRVGSDALLGEPGQGFLILQTRLAGGRLHHAMRSIGMAQRAVEMMSRRAKSRFTQGSSLADKQLVQEFVADSYTELTPFRLTVLHAAWLIDNGDERAARAEIAACKILASQVLKSIALRAIQVHGALGLTNQLPLVNVLLGGIALGLADGPTEAHKVNLARTLLKEYEAEDAEWPSELLDVRRAAARAKYGDPVDH
>NZ_AP022615.1|WP_083076186.1|2372507_2373131_-|TetR/AcrR-family-transcriptional-regulator
MTPLTTSRVTAAVERALDDRQREATEEVERILAAAVRVMERAAPEPPRVSDIVAEAGSSNKAFYRYFAGKDDLILAVMERGVAIVMSYLQHQMAKESTPRGKIARWIEGTLAQVTDPHLVSKSRAAAGQMSAGANWRAADREMLRPLRDLLIEPVTALGGADVDRDVEAVFCCTTATMRRYVGSADRPGPDDIAHVVRFCLAGLGVN
>NZ_AP022615.1|WP_083076184.1|2371533_2372508_-|NADPH:quinone-oxidoreductase-family-protein
MRAVVCRSYGAPEDLVIDDIAEPVPGPGQVLVRVHAAAVNFPDVLLIAGKYQVKIPVPFTPGSELAGEVVAVGEGAPFRLGQRVFATTPTGAFAERALLDAGSAALIPDGVDFASAAAFGVTYRTAYHALRSIAEVAQGDWVVVLGAAGGVGLAAVDLAVTMKARVLAAASGPGKLELCRQRGAEATVDYSREDLKSRIRELTGDAARVILDPVGGPYAEPALRGLARGGTFVTLGYASGTIPSIPLNLVLLKGITIQGMEIRTFMSDRPDDAVRDVAELSRMFADGTVRPYIGARFPLSETPAALRQVAERKVLGKVVIDVAP
>NZ_AP022615.1|WP_142272814.1|2369566_2371447_+|MBL-fold-metallo-hydrolase
MPVEHKPPTAVIESAHREHALPFHDTVDFDNADRGFIAALSPCVIKAADGRVVWDNDAYSFLGGDAPASVHPSLWRQSTLAAKQGLYEVVPGIYQVRGLDISNITFVEGDTGIIVIDPLISTEVAAAALDLYRAHRGGDRPVVAVIYTHSHVDHFGGVLGVTSQAEVDAGAVAVLAPEGFTAHAVQENVYAGPAMLRRATYMYGSMLARGPLGHVGCGLGQAASAGEVAMIVPTVDVRTTGEKHTIDGVEIEFQMAPGTEAPAEMHFYFPRFRALCMAENATHNLHNLLTLRGALVRDPRAWSGYLTEAIDAFARRADVVFASHHWPTWGRDAIVEYLSLQRDMYAYLHDQTLRLLNRGYTGVEIAEMFEMPPALERAWHTRGYYGSISHNVKAVYQRYMGWFDGNPARLWPQPPEALAPRYVDAMGGIDRVVELAREAFASGDFRWAATLLDHAIFTDSEHAAARALYADTLEQLAYGAENATWRNFFMSGAAELRDGNFGTAGQVASPTMLSQLTPEQIFDSLAIRVNGPRAWDLDLAVDLTFADSATNYRIALRNGVLVHREAPADPATATVTVRLDSKFRLLAVATGDFAAPGLDIFGDRAALQALLGVLDEPDPNFNIVTP
>NZ_AP022615.1|WP_083076180.1|2368858_2369335_-|lipoprotein-LpqH
MKRGLTVAAAAAAILVAGISGCSSNKSTTSGSGTSSGAASVATGGGGGAGPTVIIDGKNQNVTGSVVCTTAGGNTTIAIGGTATGISAVLGGDNQVKSVGLGNVNGVTLAYAQGSGQGNASATKNGNSYKITGNATGVDMANPMQPVNKPFEIDVTCS
>NZ_AP022615.1|WP_083076178.1|2367326_2368862_+|HAMP-domain-containing-histidine-kinase
MSSSRLASTRRAWSLRLRLLVGQVVVLAVVCVGITAATELALLRHLVAQLDGQLAGTSYRSALMYPEPKRPGWHHESHFYPRPGPGPRFLDAPGQPAGMVAAVISDGKTVDAGYLTSAGARAALTATAQSQLEHIAGSRSPVTLDLDDLGRYRVVAAPSRSGGDIIVTGLSMANVDATMIEMLVILGVVTVIALVAATTAGVVIIRRALAPLRRVAQTASEVVELPLDRGEVELPVRVAESDANPSTEVGQLGSALNRMLDHIAAALSARQASETRVRQFVADASHELRTPLAAIRGYTELAQRMGQEGEDREAVAHAMSRVASETERITRLVEDLLLLARLDSGRPLEREPVDLSRLAVDAVSDAHVAGPDHQWELDLPEEPVVVTGDAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPAHTLLQVIDNGPGIPGALQSEVFERFARGDSSRSRKGGSTGLGLAIVSAVVKAHNGTITVNSSPGRTEFTVRLPPNGSQPPPAILRSIG
>NZ_AP022615.1|WP_158084921.1|2380254_2381457_+|hypothetical-protein
MIALTPTVSNDLAADIQHSMTDLQQRAVELTDYVANPIQDWITTFQAAGVNLSSLYAQFQQFPFVLSQQLAANFLHYASSYVSPYQTAGNDAVGYLLGTSTTGTLSFVPQVVKGLADLQAGNFAAGIPALTSTIWSGLAVNVFQSLEAIPTILNPITQNLANATDYMTTTWLGNVPGYFADHFMGTVFTPLGVGVQNVYNSLTAGDPLGAVINTIDIPALVTNSVLNGTPNAKTGLYSQGLIADGSAGLLKYLITVTPQGLANVMVAPNTQNILGGGSLAFQAGYLGNVLATGFPTPQIVFDNLLNVIRTYAGIPSAAAAAAANGSGFAALAPAASALPGLSAGVLKAFDPAAVTNIAGSLGPSLAAEVAGSLGANLAGSLATTLSVDLSKMALHILSAL
>NZ_AP022615.1|WP_083076198.1|2381653_2382736_+|AAA-family-ATPase
MSVGWREWDDEDTTDTDEVLGATGIWLIPRTRPVLVEPRRRIVTTNTGREAHAGTALAAEHREVLEWAQARIDELIGLAEAKEHFTMWRTALQNNHHHHDVEHGGVVTSCRENHMVLLGAAGTAKKTFARVIAEVLFGLGVITRPEVTEITAHDIVAGDPSHSAARMKTVCDDARGGVLFLDEAHQLAPDTESRPFGGDVIAALQTHVAHYPGELVVILAGHPTPMQNFLTTHAGLAGRFPHTVAFTSPTPDDIVALGHRLAGKENLIVEDTAWELLRTEAARLRSIPYGHGTLLDVAGNAHYAHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPGVLHVNTTDMQRALTATHPAVTA
>NZ_AP022615.1|WP_163672431.1|2384148_2385492_+|PE-family-protein
MKRKQHSMRRNRRNTKANRGRVVGLGTAAGALLTATMAPVVAAPPAQAGVLDLIINPIIQPVMGAASTAAAAGTTAINGIGAGALAGLQTGALQGITNSLNASAAAFQGVHSAALASITNSLNASAAAFNTGGLNAALEGLHASAAAAFSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTMVYTAGQTWIASPTGQQVDGVINGPFVAVFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGTAAHHTGFAGGAAGLIGNGGVGGAGFSNASGVGGTGGIGGVGGILMGNGGAGGVGGFGYTSSAAGNGVGGAGGAAGILFGNGGAGGAGGNAGPGGWYTGKGGAGGNGAWLVGNGGAGGNAPNAPSGGGAYGGGGAGGAGGFSGLLAGNGGVGGNGGSATPGYGYKGGAGGLGGLAGILGQIGAAGTNGTHG
>NZ_AP022615.1|WP_083074232.1|2385565_2386900_+|hypothetical-protein
MHQRTVLRPLITAGAAALGASLIALTPAVSNDAASDLQRSVTTAQYRAVELLSSDPGVVNPIQTWINVFQQAGANLQTIGSNMSTGGKIFFPLAQQLAANWITYASIYVGSGNAYQGAVNGAYNFFTNANGAGQGISFFNNLTYAITAIQQGNFINAFGPQGLYGFWYGPASQIFQPMETIPTILAYMSTNFAALGNVAFNEPGLLSQSIVSMLGAFFAVGVSNSIFTALGAGFQNAYDGFAAGDLPAGVSNLLNMPGLLAGAILNGYGNSGIGNTGILSPTSTLTQPGLLNTLAVWIPQTLASKIVVNNQVKGTILTPNILGGGSLANAFSQLTSQVTTGWPTPNMWFDGLLNAYQSFLGFLGGQVGLGGAAFAAPAGVVGIAPSLAANLGGIAPSIAADFSGIAPSLAAEIGGMAPSLATNLAGTLAPQLGTLAAHLLTSLF
>NZ_AP022615.1|WP_163672433.1|2387117_2388140_+|AAA-family-ATPase
MSNVNSTAAALALAEDWCLGESGADEAAAAALGGRDAYAGTALAAERREVLDWAQARIGELIGLQSAKDRFAVWLGQHDAPHHRGVVASCSEHHMVFLGAPGTAKTTFARVVAEVLFGLGTITRPDLTKVSAHDIVAGSPSHSAARMKNVCGRARGGVLFLDEAYRLAPDTEDHCGGVEAIYTLLTCMAAYRDELVVILAGHARPMQDFLAVHAGLGVQFPFTATFTSYTPEDIVAIGRHLAGREQLLVEDAAWELLHAEAARLRSIPHGHGTLLDVAGNAHYAHDVIHTCQRARLRRLHKLAPHRRDLEHLLHTNPGVLHANTTDMQRALTATHPPVTT
>NZ_AP022615.1|WP_158084943.1|2389430_2390771_+|hypothetical-protein
MKRKQHNMRRDRRNAKANRGRVVGLGTAAGALLTATMTPIAAAPPAQAGVLDMIINPIIQPIMGAVGTAAAAGTTAINGIGAGALAGLQTGALQGITNSLNASAAAFQGVHSAALASITNSLTASAAAFNTGGLNAALEGMHASAAAALSGGGLDAAVAAANSPKAALNNLVYGAFSNVYTTVYTAGQTWITSPTGQQIDGAINAPFLYLFGRDLIGNGVNGFTGANTSPIGGIGANGSLADGGFLFGNGGTGAAGSAASPNGLVGGSAGLIGNGGAGGVGFSPAGVHLAGGNGGAGGAGGLLMGNGGVGGAGGVNAAFNSGRGGAGGNAGILFGNGGAGGAGGASNPNGGYGGRGGAGGNSAWLVGNGGQGGSAPNNIYGSGDYNIGNSGGAGGFSGLLAGNGGVGGNGGNATPGYGYAGGKGGLGGLAGFLGQIGAAGIPGTSG
>NZ_AP022615.1|WP_083077470.1|2390845_2392186_+|hypothetical-protein
MHQLTALRPLVTAGAAAVGASLIALTPAVSNDAASALQHSVAAAQQRAVELLSADTGDPGVVNPIQTWINVFQQAGMNLQEIGSNMSHGGAIPFPLAQQLAADWVTYASIYVGGVSNAYKGAVNGAYAYFTNTGQFTESVYFWLTSAISSFQQADFINGFEDLYQMLWFAPAYAIFQPMESIPTILAYMSTNFAALGNVAFNEPFQTSTSIVSMLGAFFAVGVGQSVASALGVGVQNVYDGFAAGDLPAGVSNLLNMPGMLAGAVINGYNPQGALGGTGILSPTSSLLSPGLLNTLVAWIPQTLASNIVVNNQVFGTITTPNILEGGSLANAFSQLASQVTTGWPTPNMWVNGLLNAYQSFLGFLGGQVGLGGAAFTAPAGVASIAPSLAANLGGIAPSIAADFSGIAPSLAADLSGLAPSLATNLAGTLAPKLGTLAAHILTSLF
>NZ_AP022615.1|WP_158084942.1|2392285_2393338_+|AAA-family-ATPase
MSNVNSTAAALALAEDWCRPGAYAGTALACERREVLDWAQARIDELIGLAEAKEHFRVWRTALEAGRYGVEPGGAVRENHLVFLGAPGTAKKTFARVMGEVLFGWGMITRPEVTVVSAADIAVDGPSGSASSRMQQVCARARGGVLFIDEAYQLAPDTDDDPCGGIEAIYALLTCMAAYRDELVVILAGYARPMRDFLTVHAGLAARFPFTVTFASYTPADMVGIGRRFAAKERLVVHDAAWDLLGEEVIRLQSIPHGNGTLLDAAGNAHYVHEVIGACQRARVRRLHRRAPNRRDLRQLVRTDPRVLQVNATDMGRAITASRPATAISAYQRLFPNTQTQETPTPSETG
>NZ_AP022615.1|WP_083077468.1|2393466_2394513_+|phosphotransferase-family-protein
MTSADRLEGLDLASLDRYLRSLGIERIGELRADFISGGRSNLTFRVYDDATDWLVRRPPLHGLTPSAHDMAREYRVVAALQDTAVPVARAIALCEDDSVLGAPFQIVEFVAGQVVRRRAQLEAFSHTVIDGCVDALIRVLVDLHGVDPNAVGLADFGKPSGYLERQVRRWGSQWELVRLPDDHRDADVERLHSGLRQTIPRQSRTSIVHGDFRIDNTILDADDPTRVRAVVDWELSTLGDPLSDTALMCVYRDPALDLIVNAQAAWTSPLLPTADELADRYSLVSGLPLAHWEFYMALAYFKLAIIAAGIDFRRRMSDLASGKDSEHMPEVVAPLISRGLAELAKLPG
>NZ_AP022615.1|WP_083077467.1|2394662_2395007_-|DUF1049-domain-containing-protein
MSGQSSASPAPPPSPSPASRARPAEPPVKFTRAAALWTSLIMGFLILILLLIFIAQNTATTPFTFFGWHWSLPLGVAILLAAVGGGLLTVAVGTARIVQLRRAAKKHHAATRPA

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Crispr_ID: NZ_AP022615_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_11

2973090-2973440

TypeIV-A

Consensus_repeat	Method
CCGCCGGCACCACCGCGGCCGCCGTTA	CRISPRCasFinder

6 spacers

csf1gr8

The CRISPR arrays of NZ_AP022615_11

>merge|NZ_AP022615|11|2973090-2973440|CRISPRCasFinder
CCGCCGGCACCGCCAGCGCCCCCGGCACCAGTGCTCACGGGGGGACCGCCGGTACCGCCGGCACCACCATTACCGCCGTTACCGATCAGTACCCCACCTATACCACCGGTACCGCCGGCACCACCGCGGCCGCCGTTATGGATAAATGTGCCGCCAGTACCACCGTTGCCGCCGGCACCACCGCTGCCGCCGTTACCGAACAGCCAGCCACCGAATCCGCCGTTACCGCCCGTACCGCCGGTACCAGCTGTGGCGGCGCCGCCGCCGACACCGCCGACACCGCCGGCACCACCGTTACCCATCAGCCAGCCGCCGCCGCCGCCAACACCGCCATCACCGCCGCCGCTGGTG

>NZ_AP022615|11|9|2973090-2973440|CRISPRCasFinder
CCGCCGGCACCGCCAGCGCCCCCGGCA	CCAGTGCTCACGGGGGGA
CCGCCGGTACCGCCGGCACCACCATTA	CCGCCGTTACCGATCAGTACCCCACCTATACCACCGGTA
CCGCCGGCACCACCGCGGCCGCCGTTA	TGGATAAATGTGCCGCCAGTACCACCGTTG
CCGCCGGCACCACCGCTGCCGCCGTTA	CCGAACAGCCAGCCACCGAAT
CCGCCGTTACCGCCCGTACCGCCGGTA	CCAGCTGTGGCGGCGCCG
CCGCCGACACCGCCGACACCGCCGGCA	CCACCGTTACCCATCAGCCAGCCGCCGCCGCCGCCA
ACACCGCCATCACCGCCGCCGCTGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083075616.1\|2979106_2979688_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022615.1\|WP_083075599.1\|2962767_2964912_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236864
NZ_AP022615.1\|WP_083075605.1\|2968565_2968826_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NZ_AP022615.1\|WP_083075597.1\|2961551_2962763_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236197
NZ_AP022615.1\|WP_083075611.1\|2975565_2975910_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|377579
NZ_AP022615.1\|WP_083075638.1\|2968884_2969580_-\|hypothetical-protein	csf1gr8	mkCas0068_csf1gr8_CAS-IV-A	unknown
NZ_AP022615.1\|WP_083075602.1\|2966335_2966872_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022615.1\|WP_083075600.1\|2965046_2966255_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|169028
NZ_AP022615.1\|WP_083075606.1\|2971089_2972154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083075603.1\|2966971_2967961_+\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274648
NZ_AP022615.1\|WP_083075614.1\|2977265_2977883_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022615.1\|WP_083075622.1\|2981680_2982094_+\|OB-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|224462
NZ_AP022615.1\|WP_083075596.1\|2960169_2961360_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|236095
NZ_AP022615.1\|WP_083075617.1\|2980530_2980839_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_AP022615.1\|WP_083075637.1\|2968170_2968554_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350335
NZ_AP022615.1\|WP_083075619.1\|2980835_2981096_-\|DUF3018-family-protein	unknown	unknown	gnl\|CDD\|371540
NZ_AP022615.1\|WP_083075609.1\|2975272_2975569_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_AP022615.1\|WP_083075621.1\|2981151_2981445_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_AP022615.1\|WP_142272760.1\|2976374_2976728_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083075624.1\|2982108_2983254_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238425

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083075616.1\|2979106_2979688_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.26849e-16
NZ_AP022615.1\|WP_083075599.1\|2962767_2964912_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	2.5161e-141
NZ_AP022615.1\|WP_083075605.1\|2968565_2968826_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.05698e-11
NZ_AP022615.1\|WP_083075597.1\|2961551_2962763_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236197	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase.	0
NZ_AP022615.1\|WP_083075611.1\|2975565_2975910_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|377579	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891). This family consists of hypothetical bacterial proteins of unknown function as well as phage Gp49 proteins.	4.82368e-16
NZ_AP022615.1\|WP_083075619.1\|2980835_2981096_-\|DUF3018-family-protein	gnl\|CDD\|371540	pfam11455, DUF3018, Protein of unknown function (DUF3018). This is a bacterial family of uncharacterized proteins.	9.80572e-08
NZ_AP022615.1\|WP_083075602.1\|2966335_2966872_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60289e-15
NZ_AP022615.1\|WP_083075600.1\|2965046_2966255_-\|FAD-dependent-monooxygenase	gnl\|CDD\|169028	PRK07588, PRK07588, FAD-binding domain.	1.23595e-79
NZ_AP022615.1\|WP_083075603.1\|2966971_2967961_+\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	3.94335e-108
NZ_AP022615.1\|WP_083075614.1\|2977265_2977883_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.64461e-11
NZ_AP022615.1\|WP_083075622.1\|2981680_2982094_+\|OB-fold-domain-containing-protein	gnl\|CDD\|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	2.56248e-18
NZ_AP022615.1\|WP_083075596.1\|2960169_2961360_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|236095	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC.	0
NZ_AP022615.1\|WP_083075617.1\|2980530_2980839_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.12516e-17
NZ_AP022615.1\|WP_083075637.1\|2968170_2968554_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350335	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 toxin of the VapBC toxin/antitoxin (TA) system. This family belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. M. tuberculosis VapC4 interacts with, and cleaves tRNA44Cys-GCA. M. tuberculosis VapC5 has endonucleolytic activity with RNA, this activity is low with dsRNA, and no activity has been demonstrated on dsDNA. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.13145e-44
NZ_AP022615.1\|WP_083075621.1\|2981151_2981445_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.06918e-09
NZ_AP022615.1\|WP_083075609.1\|2975272_2975569_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.30725e-12
NZ_AP022615.1\|WP_083075624.1\|2982108_2983254_+\|thiolase-family-protein	gnl\|CDD\|238425	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.	1.47674e-112

>NZ_AP022615.1|WP_083075606.1|2971089_2972154_+|hypothetical-protein
MQLTARPYITAGVALAGASMIAFTPVTASPPDIHLPSIQVPAINLTSAEDLAAAAFDPTFGWGSVVENTYNNLSTLGQEFSAAPFPLLQQVIANQEGYVNTYRTAIQGAATGLYNFVTGTGLYNLQGLFATGFHDLFVGNPNGTFGALGSIYFTGVLSLLQPLEGAIGVPIDEAKNFSNLVAEAFSFGGPVESLALNVLGLPTNIFGVLGNSSQAFVNAVGDGNLLGALTAVLDTPADLTNALLNSFTNGFGSGTYLGILAPNELMTMLLVTAPQALATSIGWQGPTAATAAAVGSLPGLSVDVLKGFDPAMVTGIAGALGPSLATDIGGALTTVAATLSAKIPTIALSILAAL
>NZ_AP022615.1|WP_083075638.1|2968884_2969580_-|hypothetical-protein
MLSDPAAAAWVVAGRPCVHAPSPVDGRCGRCGEHGPTVSSGRIISEKFTGFEAWSFGSRRLCIPCAWAFSRQPTTEPALLITTHSVTSYLDGAALADVLTVGELPTTHAVVLPTGRRRHILPTAQWGHLATDGLVVRWDAGAVSKLTNLTWLRTTVGATWPQLSRSAPPSRLLTAHPAECSSRIRTAWSLLDRWRAIPPLWAVARVLTSTPPIDNRAGNGPLSRTAAGDLR
>NZ_AP022615.1|WP_083075605.1|2968565_2968826_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MAVAASRELRNDTAGLLRRVQAGEDITVTVNGKAVALLTALQPTRCRWLGRDELLRRLDRAQADPALRQELAELAGDTTDDLGPLP
>NZ_AP022615.1|WP_083075637.1|2968170_2968554_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MLDTSVFIAQESGRRLNASRFPDEVATTVVTVAELNLGVLAAASSDVRAQRLATLDAIADIFAFPVDDVAARMWARLRIHLAETGHRVRINDLWIAAIAASRGLPVVTQDADFDALDGVAGLIIVRV
>NZ_AP022615.1|WP_083075603.1|2966971_2967961_+|LLM-class-F420-dependent-oxidoreductase
MRFGLFIPQGWRMDLVDIEPEQHWAVMRDLATYADGGAWDSLWVYDHFHTVPMPTGEATHEAWSLMAAYAATTSRIKLGQMCTAMSYRNPVYLAKVAATADIISGGRIQMGIGGGWYEHEWRAYGYGFPSAAVRLARLDEGVQIMRDAWRDGKVSFDGKHYQVDGAIVAPKPLQDKGIPLWIAGGGEKVTLRIAAKYAQYTNFTSEPTAFAHKSEVLARHCRDVGTDFDAIVRSSNFTAIVGASDADVKDRLQRVRDRMVRYVPEAVADSMIAGGSGSDSATGTPQQVIERMAKLRDLGCEYAICYFPEAAYDRSGIELFEREVIPALS
>NZ_AP022615.1|WP_083075602.1|2966335_2966872_+|TetR/AcrR-family-transcriptional-regulator
MSRPRSDTRQRIQEVARDLFLQQGVQRTSLQDIADKLGITKPALYYHFASREELVRSILVPLIDEGEQFIDDQESRGDTDARELLEGYFDFHYRHRHDLMLVLAEIAMLADLGLIDKVLAWRDRLGKLVFGPRPTLEQSTRAVVAFGGLQDCCLQFPDTPYDVLRATSVKAALDALGV
>NZ_AP022615.1|WP_083075600.1|2965046_2966255_-|FAD-dependent-monooxygenase
MRILVSGASIAGPVLAYWLTRHGFDVTVVERAPTLRKTGGHAVDLFRPAMEISAKMGVLPRIEALATGTSRLTMYREGRPRPTEIDLTKIYGASSDRHVEIMRDDLSEIYYDAARDDVEYLFGDSITAIDHGGEVTFERAPARRFDVIVGADGLHSNVRRLVFGDEAGLTRFIGGYLAVVSAPKALVNDAEMVGHVGVGRVAAIYTARHLDDARAVFLFRSKQELDYDHRDSLRQKGLLRNAFEGMHPQVDRWIGEIDRTPAFYFDAISQLRLDIWSRRRVTLVGDAGYCPGPAVGGSTSLAVLGAYVLAGELARADGDHLRAFAAYELQMREPVHLSRAFARGAAKGIIPGSRAGVWALTRGAQLVSLMPGSLSRAVAKLNTKGVRLYDSMPVPDYTGADV
>NZ_AP022615.1|WP_083075599.1|2962767_2964912_+|enoyl-CoA-hydratase/isomerase-family-protein
MPENTIQWDKDADGIVTLTMDDPTGSANVMNEHYAESMHKAVERFVAEKDSITGVVITSAKKTFFAGGDLKGMIKLGPENAGEAFDTVESVKRDLRVLETLGKPVVAAINGAALGGGLEIALACHHRIAADVKGLVVGLPEVTLGLLPGGGGVTRTVRMFGIQNAFMNILSQGTRFRPDKAKEIGLVDELVGSVEELVPAAKAWIKANPEAHEQPWDKKGYKMPGGTPSSPALAAILPSFPALLRKQLKGAPMPAPRAILDAAVEGAQVDFDTASRIESRYFTSLVTGQVAKNMIQAFFFDLQHINGGGSRPDGIEPVKINKIGVLGAGMMGAGIAYVSAKAGFDVVLKDVSVEAAAKGKGYSEKLEAKALQRGKTTEEKSKALLDRITPTADAADFKGVDFVIEAVFENQDLKHKVFQEIEDVVEPNALLGSNTSTLPITGLATGVKRQEDFIGIHFFSPVDKMPLVEIIKGEKTSDEALARVFDYTLAIGKTPIVVNDSRGFFTSRVIGTFVNEALAMLGEGVEPASVEHAGSQAGYPAPPLQLSDELNLELMHKIATATRKGVEDAGGTYEPHPAEAVVEKMIELGRPSRLKGAGFYEYADGKRTRLWPGLREAFKSGSSQPPLRDMIDRMLFAEALETQKCLDEGVLTSTADANIGSIMGIGYPPYTGGSAQFIVGYQGPAGTGKEAFVARARELAAKYGDRFLPPKSLT
>NZ_AP022615.1|WP_083075597.1|2961551_2962763_+|acetyl-CoA-C-acetyltransferase
MSEEAFIYEAIRTPRGKQRNGSLHEVKPLNLIVGLVDELRRRFPDLDENLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYQIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAAEAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKVGAAANLTPRARIVATATSGADPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERRGARRALITLCIGGGMGVATIIERV
>NZ_AP022615.1|WP_083075596.1|2960169_2961360_-|pyridoxal-phosphate-dependent-aminotransferase
MTVSRLRPYATTVFAEMSALAARIGAVNLGQGFPDEDGPPAMLKAAQDAIAEGANQYPPGIGIASLRQAIAAHRQRHFGVRYDPDTEVLVTVGATEAIAAAVIGLIEPGSEVILIEPFYDSYSPVVAMAGAHRVAVPLVPDGRGFALDADALRRAVTPRTRALIVNSPHNPTGTVLSATDLAAIAQIAVAADLVVITDEVYEHLVFDGPGGKKHLPLAAFDGMTERTITISSAAKMFNCTGWKIGWACGPAQLIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAELRRSLRGRRDRLAAGLTEIGFAVHDSDGSYFLCADPRPLGYDDSTAFCAALPERVGVAAIPMSAFCDPAAEHAAKQAGVWNHLVRFTFCKRDDTLDEALRRLAALRD
>NZ_AP022615.1|WP_083075609.1|2975272_2975569_-|helix-turn-helix-transcriptional-regulator
MSDYNQRRQQLIDELSPDDRQVFDKAYATAGPAMQLAETVYRARESAGLTQTELARRMGTTQSAIAAIEAGARTPTVALLERLARACGGRLTIRIDAA
>NZ_AP022615.1|WP_083075611.1|2975565_2975910_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MADRDAQPWRIELSKEVDQWLDTLPLKAKAQAVRALDLLSERGTELGMPHSRKLADRLWELRFRCERVNQRITSTVEPKRRIITLTTFGKQRNNKRKEVQRARNVLRRHRGDSR
>NZ_AP022615.1|WP_142272760.1|2976374_2976728_+|hypothetical-protein
MPLTTPKSALLQQMSTEIQNQACDLVRLITVKHIDVVETTEQDLLSSILDYLRTAVRASYVSPEMTVLTLQLTLSTEPAAKVAMHRMLHTNVEFYVASSRLLHQKSFRTSLSVSALR
>NZ_AP022615.1|WP_083075614.1|2977265_2977883_+|TetR/AcrR-family-transcriptional-regulator
MTSSQLKRRAKIVDAVIDMVTEAGADTVQMRDVAQRSGMALATVYKYFSSKEDLLAAALDSWQNREAEPILSGDEPPDQDPVSGIVDYLWRSQRSAHANPELTALTLQLTISTERGAKAAIDHLIYTNTMVFKHFLADVAPEDLRRVGFGLGSAFTSSLIWLLTGRMTLEESQSHVEWVVRVLLGETQQRVQKQVDIASRKLRDR
>NZ_AP022615.1|WP_083075616.1|2979106_2979688_+|TetR/AcrR-family-transcriptional-regulator
MTSGQLKRRAKIIDAVIALIADGGADAVQMRDVAQRSGVALATVYKYFSSKEDLLAAALDTWHKRVTEPILGADEPPAQDQVSGILDYLWSSQHSAHANPEMTALTLQLTISTEPGAKVAIDQLLRTNAEIFNRLVDIVAPEDLPHLSFGLSGVLTGALIWLLTGRMTLEESLSHVEWVARVLLGGTQPRVRK
>NZ_AP022615.1|WP_083075617.1|2980530_2980839_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSRDELWTVSGVHPRPTLIIQDDLFSATESVVVIPLTTTVADAPIARVAIPTTTGIAQPSFAMIDKITTVRRSNLGVRVGRVSTMVMDDIERSVMVFLGLAS
>NZ_AP022615.1|WP_083075619.1|2980835_2981096_-|DUF3018-family-protein
MRWRHRACGHGWLFALGAATTADSTPSEQRPDELRARPLDQVWVPDVRSERFATEAHREALALVEADRHNDDMDFVEAISELVDHE
>NZ_AP022615.1|WP_083075621.1|2981151_2981445_-|antibiotic-biosynthesis-monooxygenase
MPVTVILELKLKPESVPAAREVMGRALQVTRAFDGNLRTDVLVDEDDEAHWIIYELWDTVEHDEAYRAFRAGEGKLTELPPLLAAPPVKTRYITSDI
>NZ_AP022615.1|WP_083075622.1|2981680_2982094_+|OB-fold-domain-containing-protein
MQKALAPDICTWPDENPQLIGSRCGDCDATTFPAQQWCPRCSGGEMAELLLPRRGTLVAWTTQGFPPGAPYAGPTGKDFVPFGVGLVQLGDLIRVEGRLTENDPAKLQFGQEVELTMVPLTTDEEGAEVMTFAFRPV
>NZ_AP022615.1|WP_083075624.1|2982108_2983254_+|thiolase-family-protein
MTNDVAIIGVGLHPFGRFEKTAMQMGAEAIQSALNDAGLGWKDIQFGFGGSHEVSNPDAVTRLVGLTGITFTNVFNACATAASAIQQTADTIRLGKYDVGIAIGLDKHPRGAFTDDPAKLALPQWYAQNGQFVTTKFFGMKANKYLHDHNISQATLAKVAAKNFRNGALNPNAFRRKPIPEEEILNSPVLNYPLTQYMFCAPDEGAAAVIMCRADMAHKYTDKPVYVRACEIRTRRYGAYEVHATFAPLDEDVSPTVYAAKAAYEAAGIGPEDVDIAQLQDTDAGNEVIHMAETGLCADGEQEKLLADGATEIHGSMPVNTDGGLIANGEPIGASGLRQMHELVRQLRGEAGERQVPGDPRVGLAQVYGAPGTASATILST

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Crispr_ID: NZ_AP022615_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_12

3185400-3185475

Unclear

Consensus_repeat	Method
TGAGGAGGAGCGGCGCTTATGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_12

>merge|NZ_AP022615|12|3185400-3185475|CRISPRCasFinder
TGAGGAGGAGCGGCGCTTATGATCCGCGCCGCCGACGATACAGAGCGAAGCGATGAGGAGGAGCGGCGCTGATGAT

>NZ_AP022615|12|10|3185400-3185475|CRISPRCasFinder
TGAGGAGGAGCGGCGCTTATGAT	CCGCGCCGCCGACGATACAGAGCGAAGCGA
TGAGGAGGAGCGGCGCTGATGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083073579.1\|3180272_3181628_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_AP022615.1\|WP_083073662.1\|3169221_3172518_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
NZ_AP022615.1\|WP_142272586.1\|3179675_3180269_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_AP022615.1\|WP_083073568.1\|3194577_3195501_-\|potassium-transporting-ATPase-subunit-C	unknown	unknown	gnl\|CDD\|376890
NZ_AP022615.1\|WP_083073585.1\|3172526_3173171_-\|LpqN/LpqT-family-lipoprotein	unknown	unknown	gnl\|CDD\|378485
NZ_AP022615.1\|WP_083073571.1\|3190792_3191107_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083073587.1\|3166899_3167769_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NZ_AP022615.1\|WP_163672458.1\|3176177_3178973_-\|type-2-lantipeptide-synthetase-LanM	unknown	unknown	gnl\|CDD\|274840
NZ_AP022615.1\|WP_083073586.1\|3167792_3169070_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_AP022615.1\|WP_083073570.1\|3191327_3192008_-\|response-regulator	unknown	unknown	gnl\|CDD\|182522
NZ_AP022615.1\|WP_083073583.1\|3173512_3174493_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|179535
NZ_AP022615.1\|WP_083073574.1\|3188641_3189271_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|225471
NZ_AP022615.1\|WP_083073567.1\|3195502_3197653_-\|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl\|CDD\|234905
NZ_AP022615.1\|WP_083073582.1\|3174581_3176045_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184641
NZ_AP022615.1\|WP_083073573.1\|3189263_3189752_+\|DUF501-domain-containing-protein	unknown	unknown	gnl\|CDD\|224424
NZ_AP022615.1\|WP_142272579.1\|3186551_3187280_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|225501
NZ_AP022615.1\|WP_083073575.1\|3187350_3188640_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_AP022615.1\|WP_083073569.1\|3192004_3194566_-\|sensor-histidine-kinase-KdpD	unknown	unknown	gnl\|CDD\|225115
NZ_AP022615.1\|WP_083073572.1\|3189745_3190690_+\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NZ_AP022615.1\|WP_083073584.1\|3173167_3173512_-\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083073579.1\|3180272_3181628_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	4.46036e-144
NZ_AP022615.1\|WP_083073662.1\|3169221_3172518_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	9.54165e-122
NZ_AP022615.1\|WP_142272586.1\|3179675_3180269_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.84915e-18
NZ_AP022615.1\|WP_083073568.1\|3194577_3195501_-\|potassium-transporting-ATPase-subunit-C	gnl\|CDD\|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	6.79821e-38
NZ_AP022615.1\|WP_083073585.1\|3172526_3173171_-\|LpqN/LpqT-family-lipoprotein	gnl\|CDD\|378485	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN. This family is conserved in Mycobacteriaceae and is likely to be a lipoprotein.	1.92565e-75
NZ_AP022615.1\|WP_083073587.1\|3166899_3167769_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	5.24306e-105
NZ_AP022615.1\|WP_163672458.1\|3176177_3178973_-\|type-2-lantipeptide-synthetase-LanM	gnl\|CDD\|274840	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge. [Cellular processes, Toxin production and resistance].	0
NZ_AP022615.1\|WP_083073586.1\|3167792_3169070_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.35235e-78
NZ_AP022615.1\|WP_083073570.1\|3191327_3192008_-\|response-regulator	gnl\|CDD\|182522	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional.	1.89779e-83
NZ_AP022615.1\|WP_083073583.1\|3173512_3174493_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|179535	PRK03092, PRK03092, ribose-phosphate diphosphokinase.	0
NZ_AP022615.1\|WP_083073574.1\|3188641_3189271_+\|septum-formation-initiator-family-protein	gnl\|CDD\|225471	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning].	2.7263e-21
NZ_AP022615.1\|WP_083073567.1\|3195502_3197653_-\|potassium-transporting-ATPase-subunit-KdpB	gnl\|CDD\|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NZ_AP022615.1\|WP_083073582.1\|3174581_3176045_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184641	PRK14352, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_AP022615.1\|WP_083073573.1\|3189263_3189752_+\|DUF501-domain-containing-protein	gnl\|CDD\|224424	COG1507, COG1507, Uncharacterized conserved protein [Function unknown].	2.58762e-91
NZ_AP022615.1\|WP_142272579.1\|3186551_3187280_+\|lytic-murein-transglycosylase	gnl\|CDD\|225501	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane].	8.50479e-55
NZ_AP022615.1\|WP_083073575.1\|3187350_3188640_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_AP022615.1\|WP_083073569.1\|3192004_3194566_-\|sensor-histidine-kinase-KdpD	gnl\|CDD\|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NZ_AP022615.1\|WP_083073572.1\|3189745_3190690_+\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	2.70743e-98
NZ_AP022615.1\|WP_083073584.1\|3173167_3173512_-\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	4.75656e-52

>NZ_AP022615.1|WP_083073579.1|3180272_3181628_-|diaminopimelate-decarboxylase
MTLLDMLPSIGRAAPRRLDPAIWPATTHCDEEGRLCVGGVPLTEIADEFHTPTYVIDEADFRRRARRYRKTLRGVEVVYAGKSLLTTAVARWAREEGLGLDVCSAGELAVALAAGVDPARIVMHGNAKTPDELREATSVGVGRVVLDSCIEIAYLAGLARRRQPVLIRGTPNFDKFGPSTRAVTTGISDQKFGFTLDGDHAADAVRRVLAHPILDLVGLHCHLSSQGSQVVDPALYGEAIRRMIAAMADVRARHGIILTELNIGGGHAIPYLPGDRELDLDELAAVIEDALDEACAAEYFPRPTVVVEPGRALSGRAGVTLYRVCSVKTQPGGRTFVAVDGGMSDNPRVSLYGAQYTVALANRHPLAAKQRVTVAGRHCEAGDEIARDIELPADLRPGDLLAVACTGAYHHSMASNYNMVGRPPLVAVKDGRARALIRRETTADLLSRDCG
>NZ_AP022615.1|WP_142272586.1|3179675_3180269_+|TetR-family-transcriptional-regulator
MTGSERRQQLIGIARSLFAERGYEGTSIEEIALRANVSKPVVYEHFGGKEGLYAVVVDREMSALLDGITSSLTNNRSRVRVERVALALLTYVEERTDGFRIMIRDSPASISSGTYSSLLNDAVSQVASILAGDFARRGLDPDLAPLYAQALVGSVSMTAQWWLDTREPKKEVVAAHLVNLMWNGLIGLEADPRLQDE
>NZ_AP022615.1|WP_163672458.1|3176177_3178973_-|type-2-lantipeptide-synthetase-LanM
MVREAEKILWSGVGGGIQGALDDGARACLRRSLTTQLSDLSAPALYERFAKARNDGGPSGCHDRFVCTMKTNGWRHLFEAKPVLLRLMASLTRQWIDASRELITRLDADLPAIRRDLLDAGTSAPPCQVTSIDADLSDRHNFGRTVTIIGFQDGSRVVYKPKDLRVDAAWHALVERLNRVAPLELRAVRVLARHGYGWTEFIDHTSCVDRQGFQRYFRRAGAWLALFHGFVGVDMHQENIIACGEHPVPIDLEMILQAAEPWGDTGSADDGDAFEAATVKVMNSVVMAGVLPTYSWDSHETFSMGGVISNSAPRTTLAWNDINSDAMRPAKVVQADATIPNLPHINGSHSRLGGYVDDFVSGFRDYAKFLQRQRPDDLLDGFGGLPIRQVVRPTRFYGMLLQHLRDHRAMDDGVAWSAQADFPAQLADWEHDVDPAWPLLRAERAAVVDLNVPHFVMASDGHSIHDADGTSIPRGTTPGLDRARARLRGLDDAEIAWQTELVRQSTATLRRAAPVPLVSTSGPSDGDVGDAFATFTKAADAVARTLSEHAVRKGPSAAWIGLDWLGESELSQLVVLGPDLYKGTCGIALFLATHAAVTNSTSSKALAAAALSRLRGFLRGPNPGRVARQVGVGGGLGLGSIVYGLAVISTLLDDDDALQDAHAAAELITPDVISADRRLDVLGGSAGAILGLLRLHRQTGSGDALERAANCGWHLLAQQRTGPAGQRTWAPPGSDGPLNGMSHGASGYAYALASLASATGCDEFASAATECIAFENASFDAHRSDWPDLRGGGAAGRAKWCYGAQGIGLARAAMTRHPVGSGGALRSDIENAVAATEHGWPAATDALCCGTLGSIEFLWEAGGILGRDDLCERASLRLLSVIETARSNGDYRWAGGTTSRFNLGLFRGIAGVGYTALRRIEPSLPNVVIWE
>NZ_AP022615.1|WP_083073582.1|3174581_3176045_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MAFRGDTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHSLHAVAKVAPQHLVVVLGHDHQRIAPLVAGLAESMGRTIDVALQDRPLGTGHAALCGLSALPDDYAGIVVVTSGDTPLLDSDTLAGLIAAHTAAPAAVTVLTTTLGDPGGYGRILRTQDNEVMAIVEHADATPSQREIREVNAGVYAFDVAALRSALGRLSSDNAQQELYLTDAIAILRGDGQAVHARHIDDSALVAGVNNRVQLAELGAELNRRIVAAHQMAGVTFVDPATTWIDVDVTIGRDTVIHPGTQLLGRTRVGGHCVVGPDTTLTDVTVGDGASVVRTHGASSSIGDGATVGPYTYLRPGTVLGADGKLGAFVETKNSTIGAGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGESKSRTRIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVVRDDVPPGALAVSAGPQRNIEGWVRRKRPGSPAARAAEKAAQKSEPEQTP
>NZ_AP022615.1|WP_083073583.1|3173512_3174493_-|ribose-phosphate-diphosphokinase
MSHDWTDNRKNLMLFSGRAHPELAEQVAKELDVHVTAQTAREFANGEIFVRFHESVRGCDAFVLQSHPAPVNDWLMEQLIMIDALKRGSAKRITAVMPFYPYARQDKKHRGREPISARLVADLLKTAGADRIVTVDLHTDQIQGFFDGPVDHMRGQNLLTGYIRDNYSDGNMVVVSPDSGRVRIAEKWADALGGVPLAFIHKTRDPRVPNQVVSNRVVGEVAGRTCVLIDDMIDTGGTIAGAVQLLRDDGATDVIIAATHGVLSDPAAERLAACGAREVIVTNTLPIDERKRFAQLTVLSIAPLLASTIRAVFENGSVTGLFDGDA
>NZ_AP022615.1|WP_083073584.1|3173167_3173512_-|arsenate-reductase-(glutaredoxin)
MTDNVIYHNPKCSTSRKTLDLLRDNGIEPSIVEYLKTPPSRSELARMIRDAGVDVRAAVRKREPLYAELGLDAAGDDELLDAMAEHPILIERPFVVTPKGTRLARPIDAVHEIL
>NZ_AP022615.1|WP_083073585.1|3172526_3173171_-|LpqN/LpqT-family-lipoprotein
MRILLAAAVAAASVSAAACAPKEPDYRSILSGSSTTSAVTTTNKPVPLSQYLQDIGVAGQQVAPGSLTDLTVSIPTPPGWSPFSSPNITPETVMISKGGKYPTARLVVFKLRGDFDPAQVIKHGNDDAQLFENFKQLDASSADYDRFPSSMIQGSYDLDGTRLHSWNRIVIPTGSPPTNQRYLVQLTITGLADQAAAQAPDIEAIIRGFVVAAK
>NZ_AP022615.1|WP_083073662.1|3169221_3172518_+|LuxR-family-transcriptional-regulator
MSQHAEMPPLTWSELGVSELLPTGTVTLLLADVEGSTRFWDSQPEKMTAALAQLNRAVNEAIAAHDGVRPLEQGEGDSFVAAFSRASDAVACALALQRAPLSPIRVRIGIHTGEIQLRDDANYAGPTINRTARLRDLAHGGQTVLSGATESLIVDRLPDGVWLADLGSYPLRDLPRPERVVQLCHPDLCNEFPPLRVRTVVVSHNLPAQLTSFVGRQAEMTELRQLAADNRLVTLTGAGGAGKTRLAVEVASRLTSEFSDGVWYVDLAPVGVQALASVTVARTLGLPDQPGRSMMDLLARFFGEKTILLLLDNCEHLLDACGTLVVELLAACPHLTILTTSREPLGVPGELSWRVPSLPLADQAVELFIDRARRARPEFVVDEDNQELVAEICARLDGMPLAIELAAARVRALSLSQIVDSLHDRFRLLTGGARTAVRRQQTLRASVDWSHALLTEPERVLFRRLAVFAGGFDLDAAQAIGPGSEIEVYQLMDQLGLLVDKSLVVADDNGAGMRYRLLETVRQYAQEKLGESGEADEVRTRHRDYYTATAAELESRGHARDDELLEWAQTEIDNLRNAFAWSRENSDPATALQLIESLRPLWLRGGRVKEALIGLDALLADESHSQIPPAVWVGAVTLRAILAAWVGVSMDLDRTRQALTVARQLDDPPLITRALIACGRLAYYGAEDAGPYFGEAIDLARKISDKWSLCQIYGYQATAAFLAGEPIAACVAAEEGRDLADALGDRFFSRNCRAWLSLALLMREDGAYASQVGRALVAEAEAAGDLTMNVYGQIACASIHAAQGDAAAAYEAAQSALNAAEAIGGFLEDAVYAAFANAALAAGDASAAMRAAQNAWQHTNPQRELLTAIITPMGEAALACGDLAVARRWADDTVARVSGWYQMRALTVRAFIAVAQGDFEQAERDAHDALALAVHTRGYLRVADTLECLTRMVADGGNHPYAARLLGAAAGIRQRMGHARLPMYQAGYDAAVVAIREALGQEDFDAAWAEGLALATEEAIAYAQRGRGERKRPTSGWGSLTPMENDVVRLVREGLGNKDIGARLFISPRTVQTHLTHVYAKLGLTSRVQLVQEAASHS
>NZ_AP022615.1|WP_083073586.1|3167792_3169070_-|cytochrome-P450
MTTLISDCPSVCPSVCPSVCPSVFQAGLPTFAYHHLTDPDEAHRVIAEARAQAPLAIGPYGPEVLTHELVRTVLRDDRFITAKGLGLEAQGVTSGPLWDRAIRSILSLDGAVHHRLRRLVSKAFAPRAAERLRTVAAEIITGLVEPFTSVGHCDIVADIARGYPTPVICALLGAPAEDWRLFSGWVDQIKKVFEWNVVNDTPAILAALDGQDAYLEELIARRRASLADDLISDLIRAEDPTFPGDRLTHDELIVLCSALLSAGTDTTRNQLAAAVQVLAAHPDQWDLVARHPELASDAVHELMRYRPIIFGTIRRAAEDVELAGVRIPAGTLVAANTASANRDPDVHEDPERLDITRRNPPAILNFGGGVHYCLGAHLARLELTEALRVITQRMPNPRLTGPSPWKSMAGITGPTTLPLEFDVAR
>NZ_AP022615.1|WP_083073587.1|3166899_3167769_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTDWTAADLPSFAGRTVIVTGANSGLGAVTARELAHKGAKIVMAVRNTGKGQAAAAQMTGSVEVRQLDLQDLSSVRRFADGVDTVDVLINNAGIMAAPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRIDLDDLNWKNRRYSPWLAYSQSKLANLLFTSELQRRLDSAGSPLRALAAHPGFSHTNLQGASGRKWGDALVSAATRVVATDADFGARQTLYAASQDLPGNTFVGPRFGQLGRTQPVGRSRRARDAATAAALWELSEQLTGTGFPL
>NZ_AP022615.1|WP_142272579.1|3186551_3187280_+|lytic-murein-transglycosylase
MSPRRWLRAAAVIGATVMLLASSCTWQLSLFIPDGVPPPPGDPVPPVDTHVSGRPADQLRGWAEQRSAALEIPVIALEAYGYAARVAEVENPKCHIAWTTLAGIGQVESHHGTYRGATLSPNGDVSPPIRGVRLDGSGGTLRIVDAEDGKDGDAGVARAMGPMQFIPETWRLYGVDAHNDGVVSPDNIDDAALAAAGYLCWRGKDLATPRGWITALRAYNNSGIYARAVRDWATAYAAGHPL
>NZ_AP022615.1|WP_083073575.1|3187350_3188640_+|phosphopyruvate-hydratase
MPIIEQVGAREILDSRGNPTVEVEIALMDGTFARAAVPSGASTGEHEAVELRDGGERYGGKGVKKAVQAVLDEIAPAVIGLNADDQRLVDQALVDLDGTPDKSRLGGNAILGVSLAVAKAAADSAELPLFRYVGGPNAHILPVPMMNILNGGAHADTAVDIQEFMVAPIGAASFAEALRWGAEVYHALKSVLKKEGLSTGLGDEGGFAPDVAGTTAALDLIGRAIESVGFKLGVDVALALDAAATEFYTDGTGYIFEGTTRTAEQMAEFYAGLLGSYPLVSLEDPLSEDDWDGWAALTASIGDRVQIVGDDIFVTNPERLEEGIEKGVANALLVKVNQIGTLTETLDAVALAHHSGYRTMMSHRSGETEDTTIADLAVAVGSGQIKTGAPARSERVAKYNQLLRIEEALGDAARYAGDLAFPRYAPEAK
>NZ_AP022615.1|WP_083073574.1|3188641_3189271_+|septum-formation-initiator-family-protein
MAAKPDPKRRSPASRPGKAGDSVRRGRSAKPSRTTTQADRSTTRTLRERVVEPIKRQVAESVEQRSDQRLGFTARRAAVLAAVICVLTLTIAGPVRTYFAQRTEMEQLSASEAALRRQIDDLEQKKVKLGDPAYIAAQARERLGFVMPGDTPFQVQLPSAAAVSPQPGAETAKPDHGDPWYTALWHTIADAPHLPPAPPEVPNPTVPGG
>NZ_AP022615.1|WP_083073573.1|3189263_3189752_+|DUF501-domain-containing-protein
MVDRADLEAVARQLGREPRGVLEIAYRCPDGEPGVVKTAPKLPDGTPFPTLYYLTHPVLTAAASRLETTGLMREMTERLRQDPELAAAYRRAHESYLAERDAIEPLGTTSSAGGMPDRVKCLHVLIAHSLAKGPGVNPLGDEALALLAEDPAAAAVLVAGQW
>NZ_AP022615.1|WP_083073572.1|3189745_3190690_+|Ppx/GppA-family-phosphatase
MVSRLAGIDCGTNSIRLLIADVSDGKLRDVHRETRIVRLGQGVDATGRFAPDAMARTRAALADYASLLETHGAERVRMVATSAARDVANRDAFFAMTAEVLGAVLPGAVAEVITGAEEAELSFRGAVGELDCSAGPFVVVDLGGGSTEIVLGGDRVVASHSADIGCVRLTERCLHSDPPTLAEVEAARRVVRERLGVALGVVPVEGARAWVGLAGTMTTLSALAHHMATYDAAAIHLSRVGVCDLLAVCERLIGMTRSQRAALGPMHEGRADVIGGGAIVVEELARELRARAGIDELIVSEHDILDGIVLSIAE
>NZ_AP022615.1|WP_083073571.1|3190792_3191107_+|hypothetical-protein
MNLHGIELRYVLTMHLALNGPATIADMMDALTAQGFCVPGRASKVISDALRWEMARDRVRRLGRGRYGPRYIPRGTEHRIHQRVLALRAAAKLSLRGGHTECRL
>NZ_AP022615.1|WP_083073570.1|3191327_3192008_-|response-regulator
MTRVLVIDDEPHILRALRINLSVRGYEVTTASTGAGALRAAAEHRPDVVVLDLGLPDISGIEVLAGLRGWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNAAASELDQPVIETDAFTVDLAAKKVTKDGAEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVWGPAYATETHYLRVYLAQLRRKLEVDPSHPKHLLTESGMGYRFEA
>NZ_AP022615.1|WP_083073569.1|3192004_3194566_-|sensor-histidine-kinase-KdpD
MMVDVTGTAHHPKRGELRIYLGAAPGVGKTYAMLGEAHRRLERGTDLVAAVVETHGRRKTAELLDGIEVIPPSYVEYRGGSFPELDVPAVLARHPQVVLVDELAHTNTPGSKNEKRWQDVKELLDVGITVISTVNIQHLESLNDVVAQITGVEQQETIPDSIVRQASQVELIDITPEALRRRLSHGNVYAPERIDAALSNYFRRGNLTALRELALLWLADQVDTALAKYRAENKITDMWEARERVVVAVTGGPESETLVRRASRIASKSSAELMVVHVIRGDGLAGLSESRMTKIRELANSLDASVHTVVGDDVPTALLDFAREMNATQLVIGTSRRSRWARLFEEGIGPTIVQRSGKIDVHIVTHEESKRGFHLASLAPRERRAVSWLAAVIVPSVICAVTVTVFDRCLDNGGESALFFVGVLLVGLLGGVAPAVLSAVLSGLLLNYYLIPPRHSFTIAEPNSAITELVLLLIAVAVAVLVDGAAKRTREARRASQEAELLTLFAGSVLRGADLETLLERVREAYSQRAVSMLREPSEEERASGKRSDIVACVGKDPCVTVDSADTAIEVGEFWMLMAGRKLSARDRRVLSAVARQAAGLIRQGELAEEAGRAEAIVQADELRRSLLSAVSHDLRTPLAAAKVAVSSLRAEDVAFSPEDTAELLATIEESIDQLTALVGNLLDSSRLAAGVVRPDLHRVYLEETVQRALVSIGKGATGFYRSAIDRVKVDVGDAVVMADAGLLERVLANLIDNALRYAPNCVVRVNAGRVGDRVLINVIDEGPGIPKGTEDQIFEAFQRLGDHDNTTGVGLGMSVARGFVEAMGGSIAAGDTPGGGLTVVVDLAAPQPVGAQ
>NZ_AP022615.1|WP_083073568.1|3194577_3195501_-|potassium-transporting-ATPase-subunit-C
MKFSNFVRMHWAAFRALLVLTVITGLAYPLFIWLVAQIPGLHDKAEGSILTANGGPVGSRLIGQLFTDKDGNPLPQYFQSRPSAAGTGYDPLSSSASNLGPESIVDTPADPSQMASGKSASDAGFKPGLLTQVCTRSAAVGQLEGVDGSRPFCTGGGVGAVLSVIGPRDSRGYVLHPTRVVSVNEPCQSTRTPFLSLYEGVRVECAKYGEDYTIGQIVPIRGAAPANPAVPADAVTASGSGLDPDISPAYADIQVARVAKARHVSPDQIRAVLARYRSGRDLGFFGEPTVRVLQLNLELDRRYPVKS
>NZ_AP022615.1|WP_083073567.1|3195502_3197653_-|potassium-transporting-ATPase-subunit-KdpB
MTATAVDSAGQTQTSTKRVQGGLLDPKMLWRSTPEALRKLDPRTLWRNPVMFIVEIGAAWSTALAVLNDTWFAWLTVSWLWLTVLFANLAEAVAEGRGKAQAETLRKAKTSTMARRLRNWEPGAAAVEEQVAAPLLQQGDVVVIEAGQVIPGDGDVVEGIASVDESAITGESAPVIRESGGDRSAVTGGTTVLSDRIVVQITQKPGESFIDRMISLVEGANRQKTPNEIALNILLAALTIIFVFAVATLQPLAIYSKSNSPGVPDSQALNANGVTGIVMVALLVCLIPTTIGALLSAIGIAGMDRLVQRNVLAMSGRAVEAAGDVNTLLLDKTGTITLGNRQAAAFIPLDGITSAQLADAAQLSSLADETPEGRSVVVFAKEHFGLRARTPGELAHARWVQFSAATRMSGVDLDGHMLRKGAASSVAEWVRAQGGKVPQQLGEIVDGISAGGGTPLVVGEYADGEADKKARVLGIIHLKDVVKQGMRERFDEMRRMGIRTVMITGDNPLTAKAIADEAGVDDFLAEATPEDKLALIKREQEGGKLVAMTGDGTNDAPALAQADVGVAMNTGTSAAKEAGNMVDLDSDPTKLIEIVEIGKQLLITRGALTTFSIANDIAKYFAIIPAMFVALFPGLDMINIMRLHSPQSAILSAVIFNAIIIVMLIPLSLRGVRYTPSSASKLLSRNLYVYGLGGIVAPFIGIKLIDLIVQFVPGMS

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Crispr_ID: NZ_AP022615_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022615_13

4368737-4368837

Orphan

Consensus_repeat	Method
GGTTGCGGCCCGACGCCGAACGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022615_13

>merge|NZ_AP022615|13|4368737-4368837|CRISPRCasFinder
GGTTGCGGCCCGACGCCGAACGGCCGGCAGACATTAGCCGTCGGGTCCCACCACTGGCCCGGGTCGCATGCCAAGGGTTGCGGCCCGACGCCGAGCGGCCG

>NZ_AP022615|13|11|4368737-4368837|CRISPRCasFinder
GGTTGCGGCCCGACGCCGAACGGCCG	GCAGACATTAGCCGTCGGGTCCCACCACTGGCCCGGGTCGCATGCCAAG
GGTTGCGGCCCGACGCCGAGCGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022615.1\|WP_083072513.1\|4367149_4367578_-\|cellulose-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366161
NZ_AP022615.1\|WP_083072515.1\|4368098_4368332_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072509.1\|4362797_4363352_-\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_AP022615.1\|WP_142272484.1\|4373842_4374115_+\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|214933
NZ_AP022615.1\|WP_083072586.1\|4363352_4363694_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|378249
NZ_AP022615.1\|WP_158084849.1\|4365490_4366720_-\|methyltransferase,-FxLD-system	unknown	unknown	gnl\|CDD\|275158
NZ_AP022615.1\|WP_083072590.1\|4374128_4374791_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_AP022615.1\|WP_142272475.1\|4372960_4373257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072510.1\|4363928_4364351_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350322
NZ_AP022615.1\|WP_083072520.1\|4374959_4376198_-\|osmoprotectant-NAGGN-system-M42-family-peptidase	unknown	unknown	gnl\|CDD\|132150
NZ_AP022615.1\|WP_083072519.1\|4373397_4373658_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl\|CDD\|279710
NZ_AP022615.1\|WP_083072591.1\|4377894_4379367_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|235870
NZ_AP022615.1\|WP_083072521.1\|4376292_4377792_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237234
NZ_AP022615.1\|WP_083072589.1\|4372110_4372662_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_AP022615.1\|WP_083072511.1\|4364674_4365349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072587.1\|4364341_4364548_-\|DUF2191-domain-containing-protein	unknown	unknown	unknown
NZ_AP022615.1\|WP_083072517.1\|4370664_4371852_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_AP022615.1\|WP_142272483.1\|4369183_4370668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180605
NZ_AP022615.1\|WP_083072514.1\|4367766_4368102_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_AP022615.1\|WP_083072508.1\|4361619_4362075_+\|DUF1942-domain-containing-protein	unknown	unknown	gnl\|CDD\|370335

Protein	Function_ID	Function_description	E-value
NZ_AP022615.1\|WP_083072513.1\|4367149_4367578_-\|cellulose-binding-domain-containing-protein	gnl\|CDD\|366161	pfam00553, CBM_2, Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	1.24212e-33
NZ_AP022615.1\|WP_083072509.1\|4362797_4363352_-\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	0.00143627
NZ_AP022615.1\|WP_142272484.1\|4373842_4374115_+\|RES-domain-containing-protein	gnl\|CDD\|214933	smart00953, RES, RES domain. This presumed protein contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. RES is found widely distributed in bacteria, it has about 150 residues in length.	0.00589683
NZ_AP022615.1\|WP_083072586.1\|4363352_4363694_-\|DUF2384-domain-containing-protein	gnl\|CDD\|378249	pfam09722, DUF2384, Protein of unknown function (DUF2384). Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. The function is unknown.	1.62834e-06
NZ_AP022615.1\|WP_083072517.1\|4370664_4371852_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	4.74178e-31
NZ_AP022615.1\|WP_083072590.1\|4374128_4374791_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	7.73341e-44
NZ_AP022615.1\|WP_083072510.1\|4363928_4364351_-\|PIN-domain-containing-protein	gnl\|CDD\|350322	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC3 and VapC21 toxins. It belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is a PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.84609e-40
NZ_AP022615.1\|WP_083072520.1\|4374959_4376198_-\|osmoprotectant-NAGGN-system-M42-family-peptidase	gnl\|CDD\|132150	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.	0
NZ_AP022615.1\|WP_083072591.1\|4377894_4379367_-\|FAD-dependent-monooxygenase	gnl\|CDD\|235870	PRK06834, PRK06834, hypothetical protein; Provisional.	0
NZ_AP022615.1\|WP_083072521.1\|4376292_4377792_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|237234	PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase; Provisional.	0
NZ_AP022615.1\|WP_083072589.1\|4372110_4372662_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	4.4818e-18
NZ_AP022615.1\|WP_158084849.1\|4365490_4366720_-\|methyltransferase,-FxLD-system	gnl\|CDD\|275158	TIGR04364, methyltran_FxLD, methyltransferase, FxLD system. Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system.	7.60657e-115
NZ_AP022615.1\|WP_083072519.1\|4373397_4373658_+\|ribbon-helix-helix-protein,-CopG-family	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	0.00446042
NZ_AP022615.1\|WP_142272483.1\|4369183_4370668_+\|hypothetical-protein	gnl\|CDD\|180605	PRK06524, PRK06524, biotin carboxylase-like protein; Validated.	0
NZ_AP022615.1\|WP_083072514.1\|4367766_4368102_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	3.93583e-28
NZ_AP022615.1\|WP_083072508.1\|4361619_4362075_+\|DUF1942-domain-containing-protein	gnl\|CDD\|370335	pfam09167, DUF1942, Domain of unknown function (DUF1942). Members of this family of bacterial proteins assume a beta-sandwich structure consisting of two antiparallel beta-sheets similar to an immunoglobulin-like fold, with an additional small, antiparallel beta-sheet. The longer-stranded beta-sheet is made up of four antiparallel beta-strands. The shorter-stranded beta-sheet consists of five beta-strands, four of these beta-strands form an antiparallel beta-sheet. The exact function of this family of proteins is unknown, though a putative role includes involvement in host-bacterial interactions involved in endocytosis or phagocytosis, possibly during bacterial internalisation.	2.65484e-37

>NZ_AP022615.1|WP_083072515.1|4368098_4368332_-|hypothetical-protein
MAAETTTVRVRRPDSERLHSLAKARQTAVIDVVHAAIDALERQEFLRGLNGDYQRLRSDPELWEQYLAERNEWDALA
>NZ_AP022615.1|WP_083072514.1|4367766_4368102_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MIWRGEVYYVDLGQPVGHEPAFRRPAVVVSVDILNNGPGGLVVVVPITTASYGLRSHVELEPEGSGLEHISYARCDQLRVVSVERLSSRQGTIGPDQMRAIDQALRFVLDL
>NZ_AP022615.1|WP_083072513.1|4367149_4367578_-|cellulose-binding-domain-containing-protein
MAGLDNHVKRWRTALHVAVSALMLAILGLATTPTAHAAAATATLSVEHTWQTGFIAHFAITNASMAPLSDWKLEFNMPMGQSVSHAWNSTVTQSGTHYVLTPANWNRVIAPGGSATGGFRGVLTGSYSPPSNCVLNGQYPCT
>NZ_AP022615.1|WP_158084849.1|4365490_4366720_-|methyltransferase,-FxLD-system
MDGVRAGWQDLRDRLVDGLELAGHVSSERVAAALRTVPRHVFLPGIEPERVYRDEAFPIKYDDGGFPISSSSQPAIIARMLDQLDVQPGQRVLEIGTGTGYNAALLGHLVGETGTVISVDIDADLVTDARKRLAACGVSQVTVVCGDGGLGWSEHAPYDRIIATVGAWDISPAWVAQLAPRGRLVVPLDLRGPQRSIAFQPIDNHLESVSVVFCGFMRMRGAFAGPESIHQLGPEQGVLLGLAEQRPVDADALYAALAQPGVDVPSGVHVTLDDARRGLGLWLALHEPAIAGLSAIGAAANHGLVPALIEYPGRGTATTVLVGNGALAALVRLGEGQPFELGARPLGQEGHRLAQRLVGHIHDWNAQGRPGTAGLHVTAYPHGTDPGPIAEPGSVIDKRYNRLALTWVS
>NZ_AP022615.1|WP_083072511.1|4364674_4365349_+|hypothetical-protein
MLDARLDHVLSDGNSISLGELAGWVHRASTDAADRVRTASLQIGENFVMEGTLSWHKLPVSYVDELALGGYERLTVLDIEVPLAVAIEQSKCRWWEGRHSGLLTHGMQIGGRFISESALAQLYSGSCTASACATNARNLYIGANDAGIESEIFIVSRTATGAEYKARLTPDGDVQSWQGAPLGAVCINCGAVLKDPPAPTGRRAADAKQFPRASPPAGTRRLRP
>NZ_AP022615.1|WP_083072587.1|4364341_4364548_-|DUF2191-domain-containing-protein
MTKRLIDLDDDLLAAAQRELKTSGVSDTVRIALQQAAASSARVRQVAWLQAGGLGEMADPDQRGEVWR
>NZ_AP022615.1|WP_083072510.1|4363928_4364351_-|PIN-domain-containing-protein
MAIIARHLIDTSAAARMTHPEVAARLAPLIEAGFVATTAQLDAEALYSARNAADYEQLWSDRRLAYEYLPTNDEHWQTALDAQRRLASTGRHRAVGMADLLIATLADAHDVTLLHYDADFEIAAEVLSFRHQWVLERGSI
>NZ_AP022615.1|WP_083072586.1|4363352_4363694_-|DUF2384-domain-containing-protein
MAADDPLSQQRVLFLADVFSRAQLAKWIGVSPSQTSRWASGEERPGPAAAPALIDLEHVYSRARLVWGGDSARIWMESANAFLGGARPLDVLLTDGPARVLQALDAEMWGGAA
>NZ_AP022615.1|WP_083072509.1|4362797_4363352_-|RES-family-NAD+-phosphorylase
MLVYRVFPYLDTASRGEPGHPLYEHRPQRGGRADHPDYYVWYVGRQIEAACGEAFGNLSRWTDSMFEFPAVPGARKTLGVYELPDDLRICDLDDPRRLVELGLRPTQIVARNLAVTSEWAHRIWSQRSPAIGDRKWQAIQWWSFHRPNWTVIASWERPKLVELEHLNLNHPAVVASAKSLNRPL
>NZ_AP022615.1|WP_083072508.1|4361619_4362075_+|DUF1942-domain-containing-protein
MAFSHIASKTTATTAVLAAVGLFAATPAFADPQVLQFGQMAEISSMGGTIDYTVNNLQPSGHNDGVWYSDVMAKGVSGNATPNIADFNARAVNSSTFAVMKGNQTDGLPEGPLPLGNAVTGRIYFDVRNGTNPDSVVYRDAGGTDKVVWKG
>NZ_AP022615.1|WP_142272483.1|4369183_4370668_+|hypothetical-protein
MIVHAGGPEPGPRRMLNGISDVRAFFHTNTVPLYFISPTPFNLLGIDRWIRNFFYLTYFDSFEGVHSRVFVPRRRDRIDFGCMGDVCNHLLRDPETLEFIAQRGPGGKACFVMLDEETQALARQAGLEVMHPPAELRHRLGSKIVMTRLADEAGVPSVPHVIGRAGSYDELLALAQGAGLGDDLVVEAAYGDAGSATFFVRGQGDWDRHAGDLAGQQEVKVMKRIRNVEVCLEGAVTRHGTVIGPAMTSLVGYPELTPGKGSWCGNDIWREVLPPDQTHAAREMVRKLGDILSREGYRGYFEVDLLHDLDSDELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYELDIDEINSRWERGYGEDEVWGQVIITETSPDVELFTATPRTGVWRIDDDGRVAFARPANDWATLLDGSEAFYMRIAAPGDLRAEGAQLGVLVTRGHLQTDDYQLTERCRRWVKGIKAKFASTPLAPATPIVSRLVARA
>NZ_AP022615.1|WP_083072517.1|4370664_4371852_+|serine-hydrolase
MSGPAGITLDNWLSAPYAQWSFQHVEDFVPTAVISRGTGPVAALPTATSPLAAIPVTSTGGVATTVGAVMASTATDGWAVCYRGSMVAEEYLDGLGAQTRHLLFSVSKSLVAAVVGALHGAGAIELDAPVTKYVAALANCGYAGATVRHLLDMRSGISFSENYLDPAAEIHALDQAIGWAPKRGPGDPATLYDFLLTLRQKSAHGGPFEYRSCETDVLGWVCEVAGGQRMPELMSELLWGRIGAQCDATIGVDAVGTGFFDGGVNACLTDMIRFGSLFLCDGVSLTGQQVVPPAWIADTLDGGPDSRQAFAASPDDTELPGGMYRNQVWIPYPGSNVVLCLGMCGQMIYVNRAAEMVAAKLSTQPDSHEPHMLDTLRAFDAVAHELAGTTPHNVP
>NZ_AP022615.1|WP_083072589.1|4372110_4372662_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MTAVKSSIALAACVAAIVLTLTAPGKATAAGSCPTAAPQNGGTPDWTLAGTTGSIAVTGSTDTTAPRVNVTTPFSVTQTQVHTLHAGDGPVVPGTARVSVCYMGVNGRDGSVFDSSYARGAPIDFSLGGVVPGFQKAITGQTVGSTVAVAMTSADGYPDGQPSAGIRPGDSLIFAIKILSASS
>NZ_AP022615.1|WP_142272475.1|4372960_4373257_+|hypothetical-protein
MRIEIRPSAKDHLITEAEIRAVISFPALSLEVDPRIPNAVPVLFIGPAVVNEPWIEVIADFRNPEVADVFHAMMLRPSVVASYELNEFIGPEYAPQRA
>NZ_AP022615.1|WP_083072519.1|4373397_4373658_+|ribbon-helix-helix-protein,-CopG-family
MAADYAANPPRPDEIRSVTINPAFLRKGRPTASDESSGKTPVFTVRLPQLVRSELSRRADAEGVSLSDLIRQAVVEYLSNHPVESR
>NZ_AP022615.1|WP_142272484.1|4373842_4374115_+|RES-domain-containing-protein
MRCGRGPPRSARTRPDCSITQRWARRIVQAFPALDGLHYNSRFAGGPCLVLFPRASDAMPSRPALSLPLTHPGLALRIASASQRLGYLVV
>NZ_AP022615.1|WP_083072590.1|4374128_4374791_-|nitroreductase
MDVYEAVQSRQAVRGFTRRPVDRAVLSRVLEAASHAPSGGNLQPWHIYVLSGERLSELKGRVARRVAAGDTGDQLEVAFYPAPLGSPYQERLADFGRRRYGALGIARDDHVARARARTENWNCFGASTALFCYLDRDMPPPQWADAGMYLQTVMLLLRSEGLHSCPQIAWAEYHRTVADVIAPPAREILYCGMSIGFADPAVLRPHMPRAPLSETVTFLE
>NZ_AP022615.1|WP_083072520.1|4374959_4376198_-|osmoprotectant-NAGGN-system-M42-family-peptidase
MRQSAAMAEADRAWMIDTLLALVQTPSPAGRTDAVMQLIGDIFDDFGVPFSLTRRGALIAELPGESATTDRALVVHSDTIGCMVRGLKDNGRLELIPIGTFSARFATGARVRIFSDDPEEFITGTVLPLKASGHTFGDEIDTQPTDWEHVEVRVDRKVSSREDLVRLGLNIGDFVALIASPELTADGFIVSRHLDGKAGVAIALALAKNFSESKVVLPHRTTIMITITEEVGHGASHGLPADVAELVSVDNAVCAPGQHSIEDGVTIPMADLHGPFDYHLTRKLCRLAEERGIPFARDVFRYYRSDAAAAIEAGAGTRAALVGFGVDGSHGWERTHIDSLEAAYSLLHSWLQTPLTFAKWDAKPTGSLRDFPSSKQPAPTEQWVPLARGEHAEPGDASPGSHWPPSEGPTDG
>NZ_AP022615.1|WP_083072521.1|4376292_4377792_-|glucose-6-phosphate-dehydrogenase
MATKKPQTISYPAPDARPRRHGSDPLDPHVIVLFGATGDLAKRKLIPGLAYLDQSELAPDIQIVATSLEDFTDDEFRELAKTAIDSFGIHKLTDEQWANFAKIVTYVPQGAGPEALANAVVEAEANLGPNARRLHYLSVPPKAARDVITMLREAKLVERSRVVMEKPFGTDLASAVSLNDFLHDTFEESQIFRIDHFLGKEAAQNILAFRFANGLFEPIWNRNFIDHIQIDIPEALGLDQRANFYESTGAYKDMVVTHLFQVMAFVVMEPPTALEPYAISEEKNKVFRSMLPIDPADVVRGQYNGYRQEDGVAKDSDTETFIALKVGIDNWRWAGVPIYLRTGKKMAEGIRIISIAFKEAPRSMFPPGSGVGTQGPDHLTFDLADNSKVSLSFYGKRPGPGMKLDKLSMQFSSQEVDTVVDVLEAYERLILDAMRGDHTLFTTAEGIESLWERSAELLDDPPSAKVYQPGTWGPNAIHQLIAPSAWRLPFEREWREARH
>NZ_AP022615.1|WP_083072591.1|4377894_4379367_-|FAD-dependent-monooxygenase
MAEHAVVIAGGGPTGLMLAGELALAGVDVAVAERRANQDLIGARAGGLHSRTIEIFDQRGIADRFLSQGQVAQVAGFSQIRLEISDFPTRRPYGLALWQNHIERILADWVSELAVPIYRGRQVTGIAQGRTGVDVGLAGGQLLRAEYLVGCDGGRSVIRKAAGIGFPGWDPTTSYLLAKVEMAADAGQEPEWGIRHDALGVHSLSTLDDGGPVRVMVTERYIGPAGEPALRDLSQALIAVYGTDYGIHTPAWISRFTDMARQASTYRDRRVLLAGDAAHVHHPIGGQGLNTGVQDAVNLGWKLAQVVRRTSPDSLLDTYHSERHPVAARVLRNAMAQMALLCADDRTKALRDIMSELLGMDEPRKRFAAMMSGLDIRYDLGEGHPLLGRRMPDLDLATADGPVRVFTLLHDARPVLLNLGEPGALDIAPWADRVRLIDAKYAGAWELPALGAVPAPDAVLIRPDGHVAWVGDQSRVGLADALTTWFGPPL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1032028-1032068	0	1.0
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	1032028-1032068	1	0.976
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	1574109-1574149	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	416955-416995	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1819934-1819974	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	2384460-2384500	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	2389742-2389782	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	4127369-4127409	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	4132706-4132746	1	0.976
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	4148672-4148712	1	0.976
NZ_AP022615_11	11.5\|2973333\|18\|NZ_AP022615\|CRISPRCasFinder	2973333-2973350	18	NZ_AP022615.1	4880294-4880311	1	0.944
NZ_AP022615_3	3.1\|1015492\|41\|NZ_AP022615\|CRISPRCasFinder	1015492-1015532	41	NZ_AP022615.1	4141784-4141824	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	416955-416995	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	1448968-1449008	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	1819934-1819974	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	2379137-2379177	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	2384460-2384500	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	2389742-2389782	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	4127369-4127409	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	4132706-4132746	2	0.951
NZ_AP022615_6	6.1\|1460996\|41\|NZ_AP022615\|CRISPRCasFinder	1460996-1461036	41	NZ_AP022615.1	4148672-4148712	2	0.951
NZ_AP022615_7	7.1\|1825160\|41\|NZ_AP022615\|CRISPRCasFinder	1825160-1825200	41	NZ_AP022615.1	1032025-1032065	2	0.951
NZ_AP022615_7	7.1\|1825160\|41\|NZ_AP022615\|CRISPRCasFinder	1825160-1825200	41	NZ_AP022615.1	4141784-4141824	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1020672-1020712	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1448968-1449008	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1455666-1455706	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1568993-1569033	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1574109-1574149	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	1831999-1832039	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	2379137-2379177	2	0.951
NZ_AP022615_8	8.1\|1837316\|41\|NZ_AP022615\|CRISPRCasFinder	1837316-1837356	41	NZ_AP022615.1	2915414-2915454	2	0.951
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_AP022615.1	370807-370836	2	0.933

1. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1032028-1032068, mismatch: 0, identity: 1.0

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggccgccctggccagca	Protospacer
*****************************************

2. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 1032028-1032068, mismatch: 1, identity: 0.976

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggccgccctggccagca	Protospacer
*************** *************************

3. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 1574109-1574149, mismatch: 1, identity: 0.976

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggggtgcattcggccgccctagccagca	Protospacer
*********************************.*******

4. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 416955-416995, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggctgccctggccagca	Protospacer
***************************.*************

5. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1819934-1819974, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.**********************************

6. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 2384460-2384500, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.**********************************

7. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 2389742-2389782, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggctgccctggccagca	Protospacer
***************************.*************

8. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 4127369-4127409, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttcgagggtgtgcattcggccgccctggccagca	Protospacer
********** ******************************

9. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 4132706-4132746, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggtgtgcattcggccgccctggccagca	Protospacer
************.****************************

10. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 4148672-4148712, mismatch: 1, identity: 0.976

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.**********************************

11. spacer 11.5|2973333|18|NZ_AP022615|CRISPRCasFinder matches to position: 4880294-4880311, mismatch: 1, identity: 0.944

ccagctgtggcggcgccg	CRISPR spacer
ccagcggtggcggcgccg	Protospacer
***** ************

12. spacer 3.1|1015492|41|NZ_AP022615|CRISPRCasFinder matches to position: 4141784-4141824, mismatch: 2, identity: 0.951

cgccgccgccttccaaggcgttcattcggctgccctggcca	CRISPR spacer
cgccgccgccttccagggtgttcattcggctgccctggcca	Protospacer
***************.**.**********************

13. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 416955-416995, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggctgccctggccagca	Protospacer
*************** ***********.*************

14. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 1448968-1449008, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggcgtgcattcggccgccctggccagca	Protospacer
************.** *************************

15. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 1819934-1819974, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.******** *************************

16. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 2379137-2379177, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggcgtgcattcggccgccctggccagca	Protospacer
************.** *************************

17. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 2384460-2384500, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.******** *************************

18. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 2389742-2389782, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggtgtgcattcggctgccctggccagca	Protospacer
*************** ***********.*************

19. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 4127369-4127409, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttcgagggtgtgcattcggccgccctggccagca	Protospacer
********** **** *************************

20. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 4132706-4132746, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggtgtgcattcggccgccctggccagca	Protospacer
************.** *************************

21. spacer 6.1|1460996|41|NZ_AP022615|CRISPRCasFinder matches to position: 4148672-4148712, mismatch: 2, identity: 0.951

ggcggccttccagggggtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggccgccctggccagca	Protospacer
******.******** *************************

22. spacer 7.1|1825160|41|NZ_AP022615|CRISPRCasFinder matches to position: 1032025-1032065, mismatch: 2, identity: 0.951

cgccgccgccttccagggtgtgcattcggccgccctggcca	CRISPR spacer
cgcggcggccttccagggtgtgcattcggccgccctggcca	Protospacer
*** ** **********************************

23. spacer 7.1|1825160|41|NZ_AP022615|CRISPRCasFinder matches to position: 4141784-4141824, mismatch: 2, identity: 0.951

cgccgccgccttccagggtgtgcattcggccgccctggcca	CRISPR spacer
cgccgccgccttccagggtgttcattcggctgccctggcca	Protospacer
********************* ********.**********

24. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1020672-1020712, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggtgtgcattcggccgccctagccagca	Protospacer
************.********************.*******

25. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1448968-1449008, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggcgtgcattcggccgccctggccagca	Protospacer
************.**.*************************

26. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1455666-1455706, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggcggccctggccagca	Protospacer
******.******************** *************

27. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1568993-1569033, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggctgccctggccagca	Protospacer
******.********************.*************

28. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1574109-1574149, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccagggggtgcattcggccgccctagccagca	Protospacer
*************** *****************.*******

29. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 1831999-1832039, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttccagggtgtgcattcggctgccctggccagca	Protospacer
******.********************.*************

30. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 2379137-2379177, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggccttccaaggcgtgcattcggccgccctggccagca	Protospacer
************.**.*************************

31. spacer 8.1|1837316|41|NZ_AP022615|CRISPRCasFinder matches to position: 2915414-2915454, mismatch: 2, identity: 0.951

ggcggccttccagggtgtgcattcggccgccctggccagca	CRISPR spacer
ggcggctttcgagggtgtgcattcggccgccctggccagca	Protospacer
******.*** ******************************

32. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to position: 370807-370836, mismatch: 2, identity: 0.933

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
ccgcgccggcgacgatgcagagcgaagcga	Protospacer
******** *******.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022615_11	11.4\|2973285\|21\|NZ_AP022615\|CRISPRCasFinder	2973285-2973305	21	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	88402-88422	2	0.905
NZ_AP022615_11	11.4\|2973285\|21\|NZ_AP022615\|CRISPRCasFinder	2973285-2973305	21	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	77783-77803	2	0.905
NZ_AP022615_11	11.4\|2973285\|21\|NZ_AP022615\|CRISPRCasFinder	2973285-2973305	21	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	64667-64687	2	0.905
NZ_AP022615_11	11.4\|2973285\|21\|NZ_AP022615\|CRISPRCasFinder	2973285-2973305	21	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	64667-64687	2	0.905
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492093-492125	6	0.818
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509634-509666	6	0.818
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_CP054602	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence	46193-46225	6	0.818
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_CP049815	Monaibacterium sp. ALG8 plasmid unnamed4, complete sequence	97976-98008	6	0.818
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	182133-182165	7	0.788
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	495107-495139	7	0.788
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	MT613935	Pseudomonas phage Persinger, complete genome	7333-7362	7	0.767
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	63164-63193	7	0.767
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NC_047960	Enterobacteria phage vB_EcoS_IME347, complete genome	28190-28219	7	0.767
NZ_AP022615_9	9.1\|2118535\|31\|NZ_AP022615\|CRISPRCasFinder	2118535-2118565	31	NC_005307	Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome	53765-53795	8	0.742
NZ_AP022615_9	9.1\|2118535\|31\|NZ_AP022615\|CRISPRCasFinder	2118535-2118565	31	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	400601-400631	8	0.742
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1823678-1823707	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1658540-1658569	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1728758-1728787	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1657562-1657591	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1736578-1736607	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1736579-1736608	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1658533-1658562	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1657854-1657883	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1658522-1658551	8	0.733
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	AP014242	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C118, * SEQUENCING IN PROGRESS *	3867-3896	8	0.733
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	6047-6076	8	0.733
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	6047-6076	8	0.733
NZ_AP022615_1	1.1\|282119\|33\|NZ_AP022615\|CRISPRCasFinder	282119-282151	33	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	689025-689057	9	0.727
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	AP014018	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C106A-MedDCM-OCT-S35-C77, * SEQUENCING IN PROGRESS *	19726-19755	9	0.7
NZ_AP022615_11	11.3\|2973228\|30\|NZ_AP022615\|CRISPRCasFinder	2973228-2973257	30	AP014019	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C106A-MedDCM-OCT-S39-C83, * SEQUENCING IN PROGRESS *	12303-12332	9	0.7
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_CP023073	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence	21308-21337	9	0.7
NZ_AP022615_12	12.1\|3185423\|30\|NZ_AP022615\|CRISPRCasFinder	3185423-3185452	30	NZ_CP025114	Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence	76234-76263	9	0.7

1. spacer 11.4|2973285|21|NZ_AP022615|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.905

ccgaacagccagccaccgaat	CRISPR spacer
ccgaacagccagccaccgatc	Protospacer
******************* .

2. spacer 11.4|2973285|21|NZ_AP022615|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.905

ccgaacagccagccaccgaat	CRISPR spacer
ccgaacagccagccaccgatc	Protospacer
******************* .

3. spacer 11.4|2973285|21|NZ_AP022615|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.905

ccgaacagccagccaccgaat	CRISPR spacer
ccgaacagccagccaccgatc	Protospacer
******************* .

4. spacer 11.4|2973285|21|NZ_AP022615|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.905

ccgaacagccagccaccgaat	CRISPR spacer
ccgaacagccagccaccgatc	Protospacer
******************* .

5. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 6, identity: 0.818

cggccgcgatcgcaagcgcggcgaagccgggca	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccgggcg	Protospacer
..*  ****************** ********.

6. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 6, identity: 0.818

cggccgcgatcgcaagcgcggcgaagccgggca	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccgggcg	Protospacer
..*  ****************** ********.

7. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_CP054602 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.818

cggccgcgatcgcaagcgcggcgaagc---cgggca	CRISPR spacer
cggccgggatcgccagcgcggcgaaacgttcgg---	Protospacer
****** ****** ***********.*   ***

8. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_CP049815 (Monaibacterium sp. ALG8 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.818

cggccgcgatcgcaagcgcggcgaagc---cgggca	CRISPR spacer
cggccgggatcgccagcgcggcgaaacgttcgg---	Protospacer
****** ****** ***********.*   ***

9. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 7, identity: 0.788

cggccgcgatcgcaagcgcggcgaagccgggca	CRISPR spacer
cggccgcggtcgcaagcgcggcgatcgccgtcg	Protospacer
********.***************   * * *.

10. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 7, identity: 0.788

cggccgcgatcgcaagcgcggcgaagccgggca---	CRISPR spacer
cggccgcgatcacatgcgcggcga---cgagcgcgc	Protospacer
***********.** *********   **.**.

11. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to MT613935 (Pseudomonas phage Persinger, complete genome) position: , mismatch: 7, identity: 0.767

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
aaaggccgccgaagatgcagagcgaagcca	Protospacer
  . ******** ***.*********** *

12. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 7, identity: 0.767

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
cctcgcggccgacgatacagagcaccggca	Protospacer
** *** ****************.  *  *

13. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NC_047960 (Enterobacteria phage vB_EcoS_IME347, complete genome) position: , mismatch: 7, identity: 0.767

-ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
attgc-ccgccgacgatacagcgcgaacccg	Protospacer
 ..** *************** ***** * .

14. spacer 9.1|2118535|31|NZ_AP022615|CRISPRCasFinder matches to NC_005307 (Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome) position: , mismatch: 8, identity: 0.742

gtagccacccggtgggggtgcttgcgggccg	CRISPR spacer
tgcgacacccgatgggggggcttgcgggtca	Protospacer
   * ******.****** *********.*.

15. spacer 9.1|2118535|31|NZ_AP022615|CRISPRCasFinder matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gtagccacccggtgggggtgcttgcgggccg	CRISPR spacer
agagccaccccgtaggggtgcttgcctaccc	Protospacer
. ******** **.***********  .**

16. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

17. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

18. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

19. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

20. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

21. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

22. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

23. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

24. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
ggcatgaatgtgcccccagtaccaccagac	Protospacer
 * **.******** ***********.

25. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to AP014242 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S24-C118, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
tgtccgcctgttccgccagtaccaccgttt	Protospacer
**  ..  *** *****************

26. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 8, identity: 0.733

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
caagttcgccgtcgatccagagcgaagcgc	Protospacer
* .  .***** **** ************

27. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 8, identity: 0.733

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
caagttcgccgtcgatccagagcgaagcgc	Protospacer
* .  .***** **** ************

28. spacer 1.1|282119|33|NZ_AP022615|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.727

cggccgcgatcgcaagcgcggcgaagccgggca	CRISPR spacer
cggttgcgatcgcaagcgcggcgaccatgctcg	Protospacer
***..*******************   .*  *.

29. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to AP014018 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C106A-MedDCM-OCT-S35-C77, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
cctccgtatgtgccgccggtaccaccgctg	Protospacer
.   .. **********.*********.**

30. spacer 11.3|2973228|30|NZ_AP022615|CRISPRCasFinder matches to AP014019 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C106A-MedDCM-OCT-S39-C83, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

tggataaatgtgccgccagtaccaccgttg	CRISPR spacer
cctccgtatgtgccgccggtaccaccgctg	Protospacer
.   .. **********.*********.**

31. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP023073 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence) position: , mismatch: 9, identity: 0.7

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
cagcgccgccgacgatagagagcatgatcg	Protospacer
* *************** *****. ... .

32. spacer 12.1|3185423|30|NZ_AP022615|CRISPRCasFinder matches to NZ_CP025114 (Bradyrhizobium sp. SK17 strain CBNU plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ccgcgccgccgacgatacagagcgaagcga	CRISPR spacer
ccgcgccgccgacgatcgagagcaggatcg	Protospacer
****************  *****..... .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022615

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection